Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene032415.t1 | RHN40751.1 | 98.9 | 370 | 4 | 0 | 1 | 370 | 48 | 417 | 4.40E-175 | 624 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene032415.t1 | P37518 | 53.2 | 370 | 169 | 2 | 1 | 370 | 1 | 366 | 3.7e-106 | 386.3 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene032415.t1 | A0A396GKP1 | 98.9 | 370 | 4 | 0 | 1 | 370 | 48 | 417 | 3.2e-175 | 624.0 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene003309 | MS.gene032415 | PPI |
| MS.gene74535 | MS.gene032415 | PPI |
| MS.gene032415 | MS.gene03062 | PPI |
| MS.gene032415 | MS.gene02106 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene032415.t1 | MTR_2g030370 | 41.892 | 370 | 209 | 5 | 2 | 370 | 24 | 388 | 2.20e-93 | 285 |
| MS.gene032415.t1 | MTR_2g030335 | 60.577 | 104 | 40 | 1 | 3 | 106 | 25 | 127 | 1.30e-33 | 124 |
| MS.gene032415.t1 | MTR_2g019790 | 35.714 | 140 | 59 | 5 | 6 | 143 | 322 | 432 | 7.46e-14 | 73.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene032415.t1 | AT1G56050 | 85.135 | 370 | 55 | 0 | 1 | 370 | 52 | 421 | 0.0 | 647 |
| MS.gene032415.t1 | AT1G30580 | 40.650 | 369 | 215 | 3 | 2 | 370 | 24 | 388 | 3.11e-89 | 274 |
Find 71 sgRNAs with CRISPR-Local
Find 0 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTTGGCTCTATTGTACAAAA+AGG | 0.208665 | 8.3:+50345507 | None:intergenic |
| TAGAGCAACATATGATCTTT+TGG | 0.234785 | 8.3:-50343302 | MS.gene032415:CDS |
| AACATTTGCCACATATATAA+TGG | 0.237147 | 8.3:+50344046 | None:intergenic |
| GATCATATGTTGCTCTAATT+AGG | 0.267758 | 8.3:+50343308 | None:intergenic |
| CTTGGTGCAGCACGAGAAAA+AGG | 0.311357 | 8.3:-50340676 | MS.gene032415:CDS |
| CACATATATAATGGGTTTCA+TGG | 0.318050 | 8.3:+50344055 | None:intergenic |
| AGCAATATCTACAAACTCTA+TGG | 0.339487 | 8.3:+50345404 | None:intergenic |
| AACAAACAATGATTACGTTA+TGG | 0.354064 | 8.3:-50344000 | MS.gene032415:CDS |
| TACAATGACTTTGTTGCTGC+TGG | 0.356603 | 8.3:-50340703 | MS.gene032415:CDS |
| ACATTTGCCACATATATAAT+GGG | 0.363510 | 8.3:+50344047 | None:intergenic |
| ACAAACAATGATTACGTTAT+GGG | 0.375351 | 8.3:-50343999 | MS.gene032415:CDS |
| AGCACTTGGAGACGAGAATC+TGG | 0.379539 | 8.3:+50345465 | None:intergenic |
| ATAGATAAACACCTGAAGTA+TGG | 0.386070 | 8.3:+50345158 | None:intergenic |
| ATAGAGTTTGTAGATATTGC+TGG | 0.391580 | 8.3:-50345402 | MS.gene032415:CDS |
| TTTGTTGCTGCTGGTTCACT+TGG | 0.410289 | 8.3:-50340694 | MS.gene032415:CDS |
| CAAGAATATTTGAAATCTCT+TGG | 0.415773 | 8.3:-50343355 | MS.gene032415:CDS |
| AGGGTAGATTTACCAACATT+AGG | 0.418408 | 8.3:+50347483 | None:intergenic |
| TGAGGTGGACTCCATACTTC+AGG | 0.420128 | 8.3:-50345169 | MS.gene032415:intron |
| TTCCCTCTCAAAATCTGTTA+AGG | 0.434687 | 8.3:+50344103 | None:intergenic |
| AGTCTCAAAGCTGGTATTGT+TGG | 0.448030 | 8.3:-50347510 | MS.gene032415:CDS |
| GGTGTTAGTGAAAGTGGTCT+TGG | 0.465003 | 8.3:-50343334 | MS.gene032415:CDS |
| ACAGCAACAATCCCTACATT+TGG | 0.466715 | 8.3:+50345489 | None:intergenic |
| TACTGAGATCGGAGAGCACT+TGG | 0.466988 | 8.3:+50345451 | None:intergenic |
| ATGACATTATTCATGTGAAC+GGG | 0.475473 | 8.3:-50344664 | MS.gene032415:CDS |
| TGTACAATAGAGCCAAATGT+AGG | 0.476002 | 8.3:-50345501 | MS.gene032415:CDS |
| AAGGCATGGACAATACTTGC+AGG | 0.478540 | 8.3:-50342809 | MS.gene032415:intron |
| TCACATGTTTAGGTTGAAAA+CGG | 0.480742 | 8.3:-50345552 | MS.gene032415:intron |
| GTTGCATCTGAGTTGCAGTC+TGG | 0.485016 | 8.3:-50343966 | MS.gene032415:CDS |
| TCTCTTGGTGTTAGTGAAAG+TGG | 0.487261 | 8.3:-50343340 | MS.gene032415:CDS |
| ATGACTGCACCTCAAGCTGC+TGG | 0.490453 | 8.3:-50342256 | MS.gene032415:CDS |
| GGATGCTGGAACCATTCGTT+GGG | 0.497381 | 8.3:+50345425 | None:intergenic |
| GATATTGCTGGTCTTGTAAA+GGG | 0.502102 | 8.3:-50345390 | MS.gene032415:CDS |
| GTTTGTTGCATCAGCTAGAT+CGG | 0.502952 | 8.3:+50344016 | None:intergenic |
| TGATATTGACGTTATCAACT+TGG | 0.509555 | 8.3:-50344624 | MS.gene032415:CDS |
| TCGTTGGGATTTACTGAGAT+CGG | 0.510037 | 8.3:+50345440 | None:intergenic |
| ATTGTTGGTCTTCCTAATGT+TGG | 0.511892 | 8.3:-50347495 | MS.gene032415:CDS |
| TCTACAAACTCTATGGATGC+TGG | 0.511938 | 8.3:+50345411 | None:intergenic |
| GCTTTCTGAACTAGCGATTG+AGG | 0.523699 | 8.3:-50343383 | MS.gene032415:CDS |
| CATGAAACCCATTATATATG+TGG | 0.528753 | 8.3:-50344054 | MS.gene032415:CDS |
| GTGTTAGTGAAAGTGGTCTT+GGG | 0.530590 | 8.3:-50343333 | MS.gene032415:CDS |
| AGATATTGCTGGTCTTGTAA+AGG | 0.531314 | 8.3:-50345391 | MS.gene032415:CDS |
| AATGCAGATTGAGAAAAGAC+TGG | 0.536763 | 8.3:-50344332 | MS.gene032415:intron |
| AATTGTAACAATTTCAGCGC+AGG | 0.536813 | 8.3:-50343943 | MS.gene032415:intron |
| CTTCAACTGTTACAGGGACT+CGG | 0.538322 | 8.3:-50345216 | MS.gene032415:intron |
| ATTCATTCTGACTTTGAGAA+GGG | 0.546250 | 8.3:-50342229 | MS.gene032415:CDS |
| TGGATGCTGGAACCATTCGT+TGG | 0.546862 | 8.3:+50345424 | None:intergenic |
| AGAGGCAGAAAAGACTGCAT+TGG | 0.546937 | 8.3:-50344174 | MS.gene032415:CDS |
| ATTCGTGTAGCACTCTTGGA+TGG | 0.555782 | 8.3:-50344146 | MS.gene032415:CDS |
| TATTCATTCTGACTTTGAGA+AGG | 0.556078 | 8.3:-50342230 | MS.gene032415:CDS |
| CTTGTAAAGGGTGCAAGTCA+AGG | 0.556345 | 8.3:-50345378 | MS.gene032415:CDS |
| GATAACGTCAATATCAGACT+TGG | 0.564980 | 8.3:+50344631 | None:intergenic |
| GTACAATAGAGCCAAATGTA+GGG | 0.572299 | 8.3:-50345500 | MS.gene032415:CDS |
| ATAAGCATGAGTCTCAAAGC+TGG | 0.580496 | 8.3:-50347519 | None:intergenic |
| TGATGCTTACCGTCTCTGCT+CGG | 0.581066 | 8.3:+50342200 | None:intergenic |
| GTTAAGGTCACAGATCGTGC+AGG | 0.583415 | 8.3:+50344119 | None:intergenic |
| GACTTACGACGGCATTGAAG+AGG | 0.585086 | 8.3:+50347463 | None:intergenic |
| TATATATGTGGCAAATGTTG+CGG | 0.590385 | 8.3:-50344042 | MS.gene032415:CDS |
| AATGACATTATTCATGTGAA+CGG | 0.591318 | 8.3:-50344665 | MS.gene032415:CDS |
| TTTATCACATATTCGTGAGG+TGG | 0.594065 | 8.3:-50345184 | MS.gene032415:CDS |
| AAAGACTACATTGTACAAGA+AGG | 0.600557 | 8.3:-50340550 | MS.gene032415:CDS |
| AATGTATCCACAGGAGACAA+AGG | 0.607824 | 8.3:-50342828 | MS.gene032415:intron |
| ACTTACGACGGCATTGAAGA+GGG | 0.619986 | 8.3:+50347464 | None:intergenic |
| TGTTTGCAGTTGCGATCTGA+AGG | 0.620573 | 8.3:-50340574 | MS.gene032415:intron |
| GGGTTTCATCCGAGCAGAGA+CGG | 0.622621 | 8.3:-50342209 | MS.gene032415:intron |
| TGTTTAGGTTGAAAACGGAA+AGG | 0.629927 | 8.3:-50345547 | MS.gene032415:intron |
| ATAACGTCAATATCAGACTT+GGG | 0.632121 | 8.3:+50344632 | None:intergenic |
| TCTCAGTAAATCCCAACGAA+TGG | 0.635797 | 8.3:-50345436 | MS.gene032415:CDS |
| TGAATAACTCCAGCAGCTTG+AGG | 0.642652 | 8.3:+50342247 | None:intergenic |
| GGATTCACAATCTAAAGTCA+AGG | 0.643951 | 8.3:-50344284 | MS.gene032415:intron |
| AAAGGGTGCAAGTCAAGGCG+AGG | 0.653560 | 8.3:-50345373 | MS.gene032415:intron |
| ATCCACAGGAGACAAAGGCA+TGG | 0.678907 | 8.3:-50342823 | MS.gene032415:intron |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8.3 | gene | 50340519 | 50347535 | 50340519 | ID=MS.gene032415 |
| chr8.3 | mRNA | 50340519 | 50347535 | 50340519 | ID=MS.gene032415.t1;Parent=MS.gene032415 |
| chr8.3 | exon | 50347470 | 50347535 | 50347470 | ID=MS.gene032415.t1.exon1;Parent=MS.gene032415.t1 |
| chr8.3 | CDS | 50347470 | 50347535 | 50347470 | ID=cds.MS.gene032415.t1;Parent=MS.gene032415.t1 |
| chr8.3 | exon | 50345374 | 50345562 | 50345374 | ID=MS.gene032415.t1.exon2;Parent=MS.gene032415.t1 |
| chr8.3 | CDS | 50345374 | 50345562 | 50345374 | ID=cds.MS.gene032415.t1;Parent=MS.gene032415.t1 |
| chr8.3 | exon | 50345170 | 50345223 | 50345170 | ID=MS.gene032415.t1.exon3;Parent=MS.gene032415.t1 |
| chr8.3 | CDS | 50345170 | 50345223 | 50345170 | ID=cds.MS.gene032415.t1;Parent=MS.gene032415.t1 |
| chr8.3 | exon | 50344598 | 50344708 | 50344598 | ID=MS.gene032415.t1.exon4;Parent=MS.gene032415.t1 |
| chr8.3 | CDS | 50344598 | 50344708 | 50344598 | ID=cds.MS.gene032415.t1;Parent=MS.gene032415.t1 |
| chr8.3 | exon | 50344285 | 50344347 | 50344285 | ID=MS.gene032415.t1.exon5;Parent=MS.gene032415.t1 |
| chr8.3 | CDS | 50344285 | 50344347 | 50344285 | ID=cds.MS.gene032415.t1;Parent=MS.gene032415.t1 |
| chr8.3 | exon | 50343944 | 50344198 | 50343944 | ID=MS.gene032415.t1.exon6;Parent=MS.gene032415.t1 |
| chr8.3 | CDS | 50343944 | 50344198 | 50343944 | ID=cds.MS.gene032415.t1;Parent=MS.gene032415.t1 |
| chr8.3 | exon | 50343270 | 50343416 | 50343270 | ID=MS.gene032415.t1.exon7;Parent=MS.gene032415.t1 |
| chr8.3 | CDS | 50343270 | 50343416 | 50343270 | ID=cds.MS.gene032415.t1;Parent=MS.gene032415.t1 |
| chr8.3 | exon | 50342810 | 50342837 | 50342810 | ID=MS.gene032415.t1.exon8;Parent=MS.gene032415.t1 |
| chr8.3 | CDS | 50342810 | 50342837 | 50342810 | ID=cds.MS.gene032415.t1;Parent=MS.gene032415.t1 |
| chr8.3 | exon | 50342210 | 50342280 | 50342210 | ID=MS.gene032415.t1.exon9;Parent=MS.gene032415.t1 |
| chr8.3 | CDS | 50342210 | 50342280 | 50342210 | ID=cds.MS.gene032415.t1;Parent=MS.gene032415.t1 |
| chr8.3 | exon | 50340672 | 50340731 | 50340672 | ID=MS.gene032415.t1.exon10;Parent=MS.gene032415.t1 |
| chr8.3 | CDS | 50340672 | 50340731 | 50340672 | ID=cds.MS.gene032415.t1;Parent=MS.gene032415.t1 |
| chr8.3 | exon | 50340519 | 50340587 | 50340519 | ID=MS.gene032415.t1.exon11;Parent=MS.gene032415.t1 |
| chr8.3 | CDS | 50340519 | 50340587 | 50340519 | ID=cds.MS.gene032415.t1;Parent=MS.gene032415.t1 |
| Gene Sequence |
| Protein sequence |