Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene03062.t1 | XP_003594539.1 | 99.7 | 394 | 1 | 0 | 1 | 394 | 1 | 394 | 4.10E-227 | 797 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene03062.t1 | Q9SA73 | 85.0 | 394 | 59 | 0 | 1 | 394 | 1 | 394 | 1.1e-199 | 697.2 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene03062.t1 | G7IKV9 | 99.7 | 394 | 1 | 0 | 1 | 394 | 1 | 394 | 2.9e-227 | 797.0 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene03062 | MS.gene92155 | PPI |
| MS.gene039012 | MS.gene03062 | PPI |
| MS.gene38909 | MS.gene03062 | PPI |
| MS.gene37310 | MS.gene03062 | PPI |
| MS.gene03062 | MS.gene024505 | PPI |
| MS.gene03062 | MS.gene073967 | PPI |
| MS.gene026793 | MS.gene03062 | PPI |
| MS.gene77617 | MS.gene03062 | PPI |
| MS.gene03062 | MS.gene034044 | PPI |
| MS.gene03062 | MS.gene42992 | PPI |
| MS.gene03062 | MS.gene028573 | PPI |
| MS.gene03062 | MS.gene034046 | PPI |
| MS.gene40160 | MS.gene03062 | PPI |
| MS.gene22858 | MS.gene03062 | PPI |
| MS.gene03062 | MS.gene38917 | PPI |
| MS.gene03062 | MS.gene025968 | PPI |
| MS.gene03062 | MS.gene041968 | PPI |
| MS.gene03062 | MS.gene050582 | PPI |
| MS.gene032415 | MS.gene03062 | PPI |
| MS.gene79484 | MS.gene03062 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene03062.t1 | MTR_2g030370 | 99.746 | 394 | 1 | 0 | 1 | 394 | 1 | 394 | 0.0 | 813 |
| MS.gene03062.t1 | MTR_2g030335 | 99.213 | 127 | 1 | 0 | 1 | 127 | 1 | 127 | 4.37e-89 | 268 |
| MS.gene03062.t1 | MTR_1g023160 | 32.117 | 137 | 74 | 3 | 27 | 163 | 272 | 389 | 1.02e-12 | 69.7 |
| MS.gene03062.t1 | MTR_2g019790 | 30.986 | 142 | 77 | 3 | 27 | 167 | 321 | 442 | 2.09e-11 | 65.9 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene03062.t1 | AT1G30580 | 85.025 | 394 | 59 | 0 | 1 | 394 | 1 | 394 | 0.0 | 710 |
| MS.gene03062.t1 | AT1G56050 | 41.316 | 380 | 217 | 5 | 14 | 388 | 43 | 421 | 5.57e-95 | 291 |
| MS.gene03062.t1 | AT1G07615 | 34.000 | 100 | 49 | 1 | 27 | 126 | 306 | 388 | 8.86e-12 | 67.0 |
| MS.gene03062.t1 | AT5G18570 | 33.000 | 100 | 51 | 1 | 27 | 126 | 381 | 464 | 5.95e-11 | 64.7 |
Find 101 sgRNAs with CRISPR-Local
Find 0 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GAATCCAGTCTTTATTATTT+TGG | 0.087619 | 2.1:+60900236 | None:intergenic |
| TACGTACCATGTATGAATTT+TGG | 0.217272 | 2.1:+60902036 | None:intergenic |
| GAAACTTATTCTTCTTTCTT+TGG | 0.236801 | 2.1:+60902062 | None:intergenic |
| AGTGTAGACTTTCCAACATT+TGG | 0.320168 | 2.1:+60905639 | None:intergenic |
| AACTGGAGCTTCCTTCGATT+TGG | 0.332167 | 2.1:+60906633 | None:intergenic |
| TTCTCTTCTCACCTCAAGAT+TGG | 0.333366 | 2.1:-60906589 | MS.gene03062:CDS |
| TTTGTCCACCACCATGTTCC+TGG | 0.334504 | 2.1:+60901701 | None:intergenic |
| TGACCCTGTGAGGGATTTAG+AGG | 0.338036 | 2.1:-60905060 | MS.gene03062:CDS |
| CAGCTTGAGGAGCCTTTGTT+AGG | 0.339703 | 2.1:+60899591 | None:intergenic |
| CCAAGGATGGGTCGTTCAAC+TGG | 0.369239 | 2.1:+60906616 | None:intergenic |
| TCCTTCGATTTGGCGGATTT+AGG | 0.369949 | 2.1:+60906643 | None:intergenic |
| AGCCACTCAAAACGCTCGTC+AGG | 0.375759 | 2.1:+60905531 | None:intergenic |
| CAGGCTTGGCAGTGAGCAAC+TGG | 0.376770 | 2.1:+60903863 | None:intergenic |
| TCTCACATCCGGGCTGTTGA+TGG | 0.377798 | 2.1:-60905250 | MS.gene03062:CDS |
| ATTGGTTCGAGGTGCTCATC+AGG | 0.377843 | 2.1:-60905299 | MS.gene03062:CDS |
| ATCCCTTCTCAAAATCAGTA+TGG | 0.381594 | 2.1:+60899558 | None:intergenic |
| GCTCATCAGGGGCAAGGGTT+GGG | 0.390614 | 2.1:-60905286 | MS.gene03062:CDS |
| TCGTCTACGTGGATAATATC+TGG | 0.394590 | 2.1:+60905089 | None:intergenic |
| CAGTATTTAGCCGCCTCATC+AGG | 0.422088 | 2.1:+60901631 | None:intergenic |
| CGAGCTTGAATGTTGTCAAA+AGG | 0.422523 | 2.1:-60904486 | MS.gene03062:intron |
| AAAATATAATGTCGCCATCT+TGG | 0.425044 | 2.1:+60898606 | None:intergenic |
| ATTAGGCTCAATAGTGCAAA+AGG | 0.425631 | 2.1:+60905572 | None:intergenic |
| ACATTGACCCTTGCCTCATT+AGG | 0.436232 | 2.1:+60905555 | None:intergenic |
| TGCCAAGCCTGTTGTATACT+TGG | 0.437007 | 2.1:-60903851 | MS.gene03062:intron |
| ATGCGGATATTTACCTCATC+AGG | 0.442858 | 2.1:+60900177 | None:intergenic |
| TATATTGTTTACTAGGCTGC+TGG | 0.443774 | 2.1:-60898662 | MS.gene03062:intron |
| AAGTTCAATGTTTCTGGTGG+AGG | 0.450367 | 2.1:-60898581 | MS.gene03062:CDS |
| TGGAGCTTCCTTCGATTTGG+CGG | 0.453358 | 2.1:+60906636 | None:intergenic |
| TTGTTTGGTAGGTGCATTTG+AGG | 0.455060 | 2.1:-60905114 | MS.gene03062:intron |
| AAGATGTACGCCTAGGGGAT+TGG | 0.461198 | 2.1:-60903918 | MS.gene03062:CDS |
| TGCTCATCAGGGGCAAGGGT+TGG | 0.462712 | 2.1:-60905287 | MS.gene03062:CDS |
| TATGTTACCAAGTATACAAC+AGG | 0.463776 | 2.1:+60903844 | None:intergenic |
| TTAGAAATCCATGACATAGC+TGG | 0.466153 | 2.1:-60905322 | MS.gene03062:CDS |
| CGAGGTGCTCATCAGGGGCA+AGG | 0.466156 | 2.1:-60905292 | MS.gene03062:CDS |
| AGGTTATTACTGAAGAGTTA+CGG | 0.474516 | 2.1:-60905040 | MS.gene03062:CDS |
| AATCCATGACATAGCTGGAT+TGG | 0.477150 | 2.1:-60905317 | MS.gene03062:CDS |
| TGGAAGTGAGTCAGCTGTAA+AGG | 0.482331 | 2.1:-60898899 | MS.gene03062:intron |
| CTTCCCAAAATAATAAAGAC+TGG | 0.484849 | 2.1:-60900240 | MS.gene03062:CDS |
| CCAGTTGAACGACCCATCCT+TGG | 0.486370 | 2.1:-60906616 | MS.gene03062:CDS |
| GATGAAATTTGATGATCTAA+AGG | 0.491073 | 2.1:-60898926 | MS.gene03062:CDS |
| TTTGATGATCTAAAGGAACT+TGG | 0.496739 | 2.1:-60898919 | MS.gene03062:CDS |
| TTGCACTATTGAGCCTAATG+AGG | 0.504731 | 2.1:-60905568 | MS.gene03062:CDS |
| ACAAAGGCTCCTCAAGCTGC+AGG | 0.508694 | 2.1:-60899587 | MS.gene03062:CDS |
| TTCTTCCCAAAATTCATACA+TGG | 0.515750 | 2.1:-60902042 | MS.gene03062:intron |
| CAGGTTGGTTTGCCAAATGT+TGG | 0.517974 | 2.1:-60905651 | MS.gene03062:CDS |
| AGAAGAGAAACGACCAAGGA+TGG | 0.519305 | 2.1:+60906603 | None:intergenic |
| TCCTAAATCCGCCAAATCGA+AGG | 0.520199 | 2.1:-60906644 | MS.gene03062:CDS |
| TACTGAAGAGTTACGGCTGA+AGG | 0.521340 | 2.1:-60905033 | MS.gene03062:intron |
| GCTGGAAAATATAAACAAGA+AGG | 0.524187 | 2.1:-60898644 | MS.gene03062:CDS |
| TTAGGCTCAATAGTGCAAAA+GGG | 0.530041 | 2.1:+60905573 | None:intergenic |
| TTCAAGTTCAATGTTTCTGG+TGG | 0.536287 | 2.1:-60898584 | MS.gene03062:CDS |
| TTGGTTCGAGGTGCTCATCA+GGG | 0.537760 | 2.1:-60905298 | MS.gene03062:CDS |
| CAAAAGGGGAAGTTCTCAGC+AGG | 0.538630 | 2.1:+60905588 | None:intergenic |
| GACATAGCTGGATTGGTTCG+AGG | 0.547428 | 2.1:-60905310 | MS.gene03062:CDS |
| ATAACCTCTAAATCCCTCAC+AGG | 0.552003 | 2.1:+60905056 | None:intergenic |
| GCTTCTTTCAGGTTAAGTGT+TGG | 0.554283 | 2.1:-60899625 | MS.gene03062:intron |
| AGGGAAAAGATGTACGCCTA+GGG | 0.554324 | 2.1:-60903924 | MS.gene03062:CDS |
| TTCGATTTGGCGGATTTAGG+AGG | 0.558249 | 2.1:+60906646 | None:intergenic |
| CGGCAGCTTTCCAATCCCCT+AGG | 0.561018 | 2.1:+60903908 | None:intergenic |
| AGTTCAATGTTTCTGGTGGA+GGG | 0.562003 | 2.1:-60898580 | MS.gene03062:CDS |
| AAAACTTATGTGGTCCAAGA+TGG | 0.563170 | 2.1:-60898620 | MS.gene03062:CDS |
| TTCAGATATGCCTCCTGATG+AGG | 0.565036 | 2.1:-60901644 | MS.gene03062:CDS |
| TGGATAGCCCCTGCAGCTTG+AGG | 0.571503 | 2.1:+60899578 | None:intergenic |
| GAGGGAAAAGATGTACGCCT+AGG | 0.572957 | 2.1:-60903925 | MS.gene03062:CDS |
| CAAAGGCTCCTCAAGCTGCA+GGG | 0.574970 | 2.1:-60899586 | MS.gene03062:CDS |
| TCAGGTCAAGGCATTCATTG+AGG | 0.575043 | 2.1:-60903947 | MS.gene03062:intron |
| GAACCAATCCAGCTATGTCA+TGG | 0.579932 | 2.1:+60905314 | None:intergenic |
| CTATTGAGCCTAATGAGGCA+AGG | 0.581575 | 2.1:-60905563 | MS.gene03062:CDS |
| GAAGGGATTTATTTGTGCTG+AGG | 0.581723 | 2.1:-60899543 | MS.gene03062:intron |
| CTGGAAAATATAAACAAGAA+GGG | 0.582742 | 2.1:-60898643 | MS.gene03062:CDS |
| GTGAGGCGAACAACGTTCAA+AGG | 0.582805 | 2.1:-60901609 | MS.gene03062:intron |
| TACCAAGTATACAACAGGCT+TGG | 0.583923 | 2.1:+60903849 | None:intergenic |
| AGGGTCCAGGAACATGGTGG+TGG | 0.584742 | 2.1:-60901706 | MS.gene03062:CDS |
| ATCTTGAAAAGAGCATGAAG+AGG | 0.584769 | 2.1:-60904532 | MS.gene03062:CDS |
| TTCTCTAAGACACAGCTGAA+AGG | 0.586644 | 2.1:+60901673 | None:intergenic |
| GAGGTGCTCATCAGGGGCAA+GGG | 0.591435 | 2.1:-60905291 | MS.gene03062:CDS |
| GTCAAGGCATTCATTGAGGA+GGG | 0.593032 | 2.1:-60903943 | MS.gene03062:CDS |
| AGAATACGATTCCAATCTTG+AGG | 0.593260 | 2.1:+60906578 | None:intergenic |
| ACAAGAAGGGAAAACTTATG+TGG | 0.593833 | 2.1:-60898630 | MS.gene03062:CDS |
| AAAGGCTCCTCAAGCTGCAG+GGG | 0.596118 | 2.1:-60899585 | MS.gene03062:CDS |
| GCAAATTAGACGCCTAACAA+AGG | 0.601410 | 2.1:-60899603 | MS.gene03062:CDS |
| GGTCAAGGCATTCATTGAGG+AGG | 0.601452 | 2.1:-60903944 | MS.gene03062:CDS |
| GCCACTCAAAACGCTCGTCA+GGG | 0.607437 | 2.1:+60905532 | None:intergenic |
| GAAGAGAAACGACCAAGGAT+GGG | 0.608124 | 2.1:+60906604 | None:intergenic |
| AGGGGATTGGAAAGCTGCCG+AGG | 0.611014 | 2.1:-60903905 | MS.gene03062:CDS |
| TAGGCTCAATAGTGCAAAAG+GGG | 0.614822 | 2.1:+60905574 | None:intergenic |
| TTTCACAGCAGGACCTGATG+AGG | 0.615456 | 2.1:-60900190 | MS.gene03062:intron |
| CTTGGCAGTGAGCAACTGGA+AGG | 0.617149 | 2.1:+60903867 | None:intergenic |
| TATTGAGCCTAATGAGGCAA+GGG | 0.617548 | 2.1:-60905562 | MS.gene03062:CDS |
| TATTTAGCCGCCTCATCAGG+AGG | 0.619128 | 2.1:+60901634 | None:intergenic |
| TGGTTCGAGGTGCTCATCAG+GGG | 0.622801 | 2.1:-60905297 | MS.gene03062:CDS |
| GGAATTCAAAATCTCGACCT+CGG | 0.625649 | 2.1:+60903888 | None:intergenic |
| TCCAGGGTCCAGGAACATGG+TGG | 0.636367 | 2.1:-60901709 | MS.gene03062:intron |
| CGACACTGTTGACCCTGTGA+GGG | 0.636940 | 2.1:-60905069 | MS.gene03062:CDS |
| AGATATGCCTCCTGATGAGG+CGG | 0.638742 | 2.1:-60901641 | MS.gene03062:CDS |
| ACGACACTGTTGACCCTGTG+AGG | 0.640959 | 2.1:-60905070 | MS.gene03062:CDS |
| GGTCAACAGTGTCGTCTACG+TGG | 0.682008 | 2.1:+60905078 | None:intergenic |
| GGGAAAAGATGTACGCCTAG+GGG | 0.687762 | 2.1:-60903923 | MS.gene03062:CDS |
| GGTGAGAAGAGAAACGACCA+AGG | 0.698806 | 2.1:+60906599 | None:intergenic |
| TAACCTCTAAATCCCTCACA+GGG | 0.708122 | 2.1:+60905057 | None:intergenic |
| TGAGGCGGCTAAATACTGTG+AGG | 0.765226 | 2.1:-60901626 | MS.gene03062:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr2.1 | gene | 60898571 | 60906671 | 60898571 | ID=MS.gene03062 |
| chr2.1 | mRNA | 60898571 | 60906671 | 60898571 | ID=MS.gene03062.t1;Parent=MS.gene03062 |
| chr2.1 | exon | 60906585 | 60906671 | 60906585 | ID=MS.gene03062.t1.exon1;Parent=MS.gene03062.t1 |
| chr2.1 | CDS | 60906585 | 60906671 | 60906585 | ID=cds.MS.gene03062.t1;Parent=MS.gene03062.t1 |
| chr2.1 | exon | 60905503 | 60905670 | 60905503 | ID=MS.gene03062.t1.exon2;Parent=MS.gene03062.t1 |
| chr2.1 | CDS | 60905503 | 60905670 | 60905503 | ID=cds.MS.gene03062.t1;Parent=MS.gene03062.t1 |
| chr2.1 | exon | 60905233 | 60905356 | 60905233 | ID=MS.gene03062.t1.exon3;Parent=MS.gene03062.t1 |
| chr2.1 | CDS | 60905233 | 60905356 | 60905233 | ID=cds.MS.gene03062.t1;Parent=MS.gene03062.t1 |
| chr2.1 | exon | 60905034 | 60905125 | 60905034 | ID=MS.gene03062.t1.exon4;Parent=MS.gene03062.t1 |
| chr2.1 | CDS | 60905034 | 60905125 | 60905034 | ID=cds.MS.gene03062.t1;Parent=MS.gene03062.t1 |
| chr2.1 | exon | 60904487 | 60904585 | 60904487 | ID=MS.gene03062.t1.exon5;Parent=MS.gene03062.t1 |
| chr2.1 | CDS | 60904487 | 60904585 | 60904487 | ID=cds.MS.gene03062.t1;Parent=MS.gene03062.t1 |
| chr2.1 | exon | 60903852 | 60903965 | 60903852 | ID=MS.gene03062.t1.exon6;Parent=MS.gene03062.t1 |
| chr2.1 | CDS | 60903852 | 60903965 | 60903852 | ID=cds.MS.gene03062.t1;Parent=MS.gene03062.t1 |
| chr2.1 | exon | 60902043 | 60902107 | 60902043 | ID=MS.gene03062.t1.exon7;Parent=MS.gene03062.t1 |
| chr2.1 | CDS | 60902043 | 60902107 | 60902043 | ID=cds.MS.gene03062.t1;Parent=MS.gene03062.t1 |
| chr2.1 | exon | 60901610 | 60901726 | 60901610 | ID=MS.gene03062.t1.exon8;Parent=MS.gene03062.t1 |
| chr2.1 | CDS | 60901610 | 60901726 | 60901610 | ID=cds.MS.gene03062.t1;Parent=MS.gene03062.t1 |
| chr2.1 | exon | 60900191 | 60900266 | 60900191 | ID=MS.gene03062.t1.exon9;Parent=MS.gene03062.t1 |
| chr2.1 | CDS | 60900191 | 60900266 | 60900191 | ID=cds.MS.gene03062.t1;Parent=MS.gene03062.t1 |
| chr2.1 | exon | 60899544 | 60899636 | 60899544 | ID=MS.gene03062.t1.exon10;Parent=MS.gene03062.t1 |
| chr2.1 | CDS | 60899544 | 60899636 | 60899544 | ID=cds.MS.gene03062.t1;Parent=MS.gene03062.t1 |
| chr2.1 | exon | 60898900 | 60898950 | 60898900 | ID=MS.gene03062.t1.exon11;Parent=MS.gene03062.t1 |
| chr2.1 | CDS | 60898900 | 60898950 | 60898900 | ID=cds.MS.gene03062.t1;Parent=MS.gene03062.t1 |
| chr2.1 | exon | 60898571 | 60898669 | 60898571 | ID=MS.gene03062.t1.exon12;Parent=MS.gene03062.t1 |
| chr2.1 | CDS | 60898571 | 60898669 | 60898571 | ID=cds.MS.gene03062.t1;Parent=MS.gene03062.t1 |
| Gene Sequence |
| Protein sequence |