Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene74535.t1 | XP_003594539.1 | 99.5 | 394 | 2 | 0 | 1 | 394 | 1 | 394 | 9.00E-227 | 795.8 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene74535.t1 | Q9SA73 | 85.3 | 394 | 58 | 0 | 1 | 394 | 1 | 394 | 4.7e-200 | 698.4 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene74535.t1 | G7IKV9 | 99.5 | 394 | 2 | 0 | 1 | 394 | 1 | 394 | 6.5e-227 | 795.8 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene74535 | MS.gene40160 | PPI |
| MS.gene74535 | MS.gene073967 | PPI |
| MS.gene039012 | MS.gene74535 | PPI |
| MS.gene74535 | MS.gene034044 | PPI |
| MS.gene74535 | MS.gene034046 | PPI |
| MS.gene74535 | MS.gene22858 | PPI |
| MS.gene74535 | MS.gene42992 | PPI |
| MS.gene74535 | MS.gene025968 | PPI |
| MS.gene74535 | MS.gene028573 | PPI |
| MS.gene74535 | MS.gene026793 | PPI |
| MS.gene74535 | MS.gene032415 | PPI |
| MS.gene74535 | MS.gene050582 | PPI |
| MS.gene74535 | MS.gene38909 | PPI |
| MS.gene74535 | MS.gene38917 | PPI |
| MS.gene74535 | MS.gene041968 | PPI |
| MS.gene74535 | MS.gene92155 | PPI |
| MS.gene74535 | MS.gene024505 | PPI |
| MS.gene79484 | MS.gene74535 | PPI |
| MS.gene74535 | MS.gene37310 | PPI |
| MS.gene74535 | MS.gene77617 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene74535.t1 | MTR_2g030370 | 99.492 | 394 | 2 | 0 | 1 | 394 | 1 | 394 | 0.0 | 811 |
| MS.gene74535.t1 | MTR_2g030335 | 98.425 | 127 | 2 | 0 | 1 | 127 | 1 | 127 | 1.56e-88 | 266 |
| MS.gene74535.t1 | MTR_1g023160 | 32.117 | 137 | 74 | 3 | 27 | 163 | 272 | 389 | 1.29e-12 | 69.3 |
| MS.gene74535.t1 | MTR_2g019790 | 30.986 | 142 | 77 | 3 | 27 | 167 | 321 | 442 | 3.14e-11 | 65.5 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene74535.t1 | AT1G30580 | 85.279 | 394 | 58 | 0 | 1 | 394 | 1 | 394 | 0.0 | 711 |
| MS.gene74535.t1 | AT1G56050 | 41.053 | 380 | 218 | 5 | 14 | 388 | 43 | 421 | 1.93e-94 | 289 |
| MS.gene74535.t1 | AT1G07615 | 33.000 | 100 | 50 | 1 | 27 | 126 | 306 | 388 | 2.56e-11 | 65.5 |
| MS.gene74535.t1 | AT5G18570 | 33.000 | 100 | 51 | 1 | 27 | 126 | 381 | 464 | 8.87e-11 | 64.3 |
Find 104 sgRNAs with CRISPR-Local
Find 0 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GAATCCAGTCTTTATTATTT+TGG | 0.087619 | 2.3:+59474819 | None:intergenic |
| GAAACTTGTTCTTCTTTCTT+TGG | 0.236801 | 2.3:+59476391 | None:intergenic |
| TACGTACCATGTGTGAATTT+TGG | 0.247433 | 2.3:+59476365 | None:intergenic |
| AGTGTAGACTTTCCAACATT+TGG | 0.320168 | 2.3:+59479816 | None:intergenic |
| AACTGGAGCTTCCTTCGATT+TGG | 0.332167 | 2.3:+59480853 | None:intergenic |
| TTCTCTTCTCACCTCAAGAT+TGG | 0.333366 | 2.3:-59480809 | MS.gene74535:CDS |
| TTTGTCCACCACCATGTTCC+TGG | 0.334504 | 2.3:+59476007 | None:intergenic |
| TGACCCTGTGAGGGATTTAG+AGG | 0.338036 | 2.3:-59479234 | MS.gene74535:CDS |
| CAGCTTGAGGAGCCTTTGTT+AGG | 0.339703 | 2.3:+59474113 | None:intergenic |
| ATCCTTTCTCAAAATCAGTA+TGG | 0.361106 | 2.3:+59474080 | None:intergenic |
| CCAAGGATGGGTCGTTCAAC+TGG | 0.369239 | 2.3:+59480836 | None:intergenic |
| TCCTTCGATTTGGCGGATTT+AGG | 0.369949 | 2.3:+59480863 | None:intergenic |
| AGCCACTCAAAACGCTCGTC+AGG | 0.375759 | 2.3:+59479708 | None:intergenic |
| TCTCACATCCGGGCTGTTGA+TGG | 0.377798 | 2.3:-59479424 | MS.gene74535:CDS |
| GCTCATGAGGGGCAAGGGTT+GGG | 0.388174 | 2.3:-59479460 | MS.gene74535:CDS |
| TCGTCTACGTGGATAATATC+TGG | 0.394590 | 2.3:+59479263 | None:intergenic |
| TGCCAAGCCTGTTGTATACT+TGG | 0.397853 | 2.3:-59477537 | MS.gene74535:intron |
| ATTGTTTATTATTAGGCTGC+TGG | 0.416370 | 2.3:-59473182 | MS.gene74535:intron |
| CAGTATTTAGCCGCCTCATC+AGG | 0.422088 | 2.3:+59475937 | None:intergenic |
| CGAGCTTGAATGTTGTCAAA+AGG | 0.422523 | 2.3:-59478657 | MS.gene74535:intron |
| ATTAGGCTCAATAGTGCAAA+AGG | 0.425631 | 2.3:+59479749 | None:intergenic |
| ACATTGACCCTTGCCTCATT+AGG | 0.436232 | 2.3:+59479732 | None:intergenic |
| AAAATATAATGTCACCATCT+TGG | 0.441622 | 2.3:+59473126 | None:intergenic |
| ATGTGGATATTTACCTCATC+AGG | 0.442858 | 2.3:+59474760 | None:intergenic |
| CAGGCTTGGCAGTAAGCAAC+TGG | 0.446559 | 2.3:+59477549 | None:intergenic |
| AAGTTCAATGTTTCTGGTGG+AGG | 0.450367 | 2.3:-59473101 | MS.gene74535:CDS |
| TGGAGCTTCCTTCGATTTGG+CGG | 0.453358 | 2.3:+59480856 | None:intergenic |
| TTGTTTGGTAGGTGCATTTG+AGG | 0.455060 | 2.3:-59479288 | MS.gene74535:intron |
| TGCTCATGAGGGGCAAGGGT+TGG | 0.460273 | 2.3:-59479461 | MS.gene74535:CDS |
| AAGATGTACGCCTAGGGGAT+TGG | 0.461198 | 2.3:-59477604 | MS.gene74535:CDS |
| TATGTTACCAAGTATACAAC+AGG | 0.463776 | 2.3:+59477530 | None:intergenic |
| TTAGAAATCCATGACATAGC+TGG | 0.466153 | 2.3:-59479496 | MS.gene74535:CDS |
| TTTCAATACACTCACAAAGA+TGG | 0.470261 | 2.3:-59479793 | MS.gene74535:CDS |
| AGGTTATTACTGAAGAGTTA+CGG | 0.474516 | 2.3:-59479214 | MS.gene74535:CDS |
| ACATTTGTTCTCCAGGGTCC+AGG | 0.476574 | 2.3:-59476025 | MS.gene74535:intron |
| AATCCATGACATAGCTGGAT+TGG | 0.477150 | 2.3:-59479491 | MS.gene74535:CDS |
| TTCTCCAGGGTCCAGGAACA+TGG | 0.481367 | 2.3:-59476018 | MS.gene74535:intron |
| CGAGGTGCTCATGAGGGGCA+AGG | 0.481862 | 2.3:-59479466 | MS.gene74535:CDS |
| TGGAAGTGAGTCAGCTGTAA+AGG | 0.482331 | 2.3:-59473422 | MS.gene74535:intron |
| CTTCCCAAAATAATAAAGAC+TGG | 0.484849 | 2.3:-59474823 | MS.gene74535:CDS |
| CCAGTTGAACGACCCATCCT+TGG | 0.486370 | 2.3:-59480836 | MS.gene74535:CDS |
| GATGAAATTTGATGATCTAA+AGG | 0.491073 | 2.3:-59473449 | MS.gene74535:CDS |
| TTTGATGATCTAAAGGAACT+TGG | 0.496739 | 2.3:-59473442 | MS.gene74535:CDS |
| TTGCACTATTGAGCCTAATG+AGG | 0.504731 | 2.3:-59479745 | MS.gene74535:CDS |
| ACAAAGGCTCCTCAAGCTGC+AGG | 0.508694 | 2.3:-59474109 | MS.gene74535:CDS |
| CAGGTTGGTTTGCCAAATGT+TGG | 0.517974 | 2.3:-59479828 | MS.gene74535:CDS |
| AGAAGAGAAACGACCAAGGA+TGG | 0.519305 | 2.3:+59480823 | None:intergenic |
| TCCTAAATCCGCCAAATCGA+AGG | 0.520199 | 2.3:-59480864 | MS.gene74535:CDS |
| TACTGAAGAGTTACGGCTGA+AGG | 0.521340 | 2.3:-59479207 | MS.gene74535:intron |
| GCTGGAAAATATAAACAAGA+AGG | 0.524187 | 2.3:-59473164 | MS.gene74535:CDS |
| TTAGGCTCAATAGTGCAAAA+GGG | 0.530041 | 2.3:+59479750 | None:intergenic |
| TTCAAGTTCAATGTTTCTGG+TGG | 0.536287 | 2.3:-59473104 | MS.gene74535:CDS |
| CAAAAGGGGAAGTTCTCAGC+AGG | 0.538630 | 2.3:+59479765 | None:intergenic |
| GACATAGCTGGATTGGTTCG+AGG | 0.547428 | 2.3:-59479484 | MS.gene74535:CDS |
| TTGGTTCGAGGTGCTCATGA+GGG | 0.547681 | 2.3:-59479472 | MS.gene74535:CDS |
| ATAACCTCTAAATCCCTCAC+AGG | 0.552003 | 2.3:+59479230 | None:intergenic |
| GCTTCTTTCAGGTTAAGTGT+TGG | 0.554283 | 2.3:-59474147 | MS.gene74535:intron |
| AGGGAAAAGATGTACGCCTA+GGG | 0.554324 | 2.3:-59477610 | MS.gene74535:CDS |
| TTCGATTTGGCGGATTTAGG+AGG | 0.558249 | 2.3:+59480866 | None:intergenic |
| CGGCAGCTTTCCAATCCCCT+AGG | 0.561018 | 2.3:+59477594 | None:intergenic |
| AGTTCAATGTTTCTGGTGGA+GGG | 0.562003 | 2.3:-59473100 | MS.gene74535:CDS |
| TTCAGATATGCCTCCTGATG+AGG | 0.565036 | 2.3:-59475950 | MS.gene74535:CDS |
| GAAAGGATTTATTTGTGCTG+AGG | 0.566045 | 2.3:-59474065 | MS.gene74535:intron |
| ATTGGTTCGAGGTGCTCATG+AGG | 0.566137 | 2.3:-59479473 | MS.gene74535:CDS |
| AAAACTTATGTGGTCCAAGA+TGG | 0.567578 | 2.3:-59473140 | MS.gene74535:CDS |
| TGGATAGCCCCTGCAGCTTG+AGG | 0.571503 | 2.3:+59474100 | None:intergenic |
| GAGGGAAAAGATGTACGCCT+AGG | 0.572957 | 2.3:-59477611 | MS.gene74535:CDS |
| CAAAGGCTCCTCAAGCTGCA+GGG | 0.574970 | 2.3:-59474108 | MS.gene74535:CDS |
| TCAGGTCAAGGCATTCATTG+AGG | 0.575043 | 2.3:-59477633 | MS.gene74535:intron |
| GAACCAATCCAGCTATGTCA+TGG | 0.579932 | 2.3:+59479488 | None:intergenic |
| CTATTGAGCCTAATGAGGCA+AGG | 0.581575 | 2.3:-59479740 | MS.gene74535:CDS |
| CTGGAAAATATAAACAAGAA+GGG | 0.582742 | 2.3:-59473163 | MS.gene74535:CDS |
| GTGAGGCGAACAACGTTCAA+AGG | 0.582805 | 2.3:-59475915 | MS.gene74535:intron |
| TACCAAGTATACAACAGGCT+TGG | 0.583923 | 2.3:+59477535 | None:intergenic |
| AGGGTCCAGGAACATGGTGG+TGG | 0.584742 | 2.3:-59476012 | MS.gene74535:CDS |
| ATCTTGAAAAGAGCATGAAG+AGG | 0.584769 | 2.3:-59478703 | MS.gene74535:CDS |
| TTCTCTAAGACACAGCTGAA+AGG | 0.586644 | 2.3:+59475979 | None:intergenic |
| GAGGTGCTCATGAGGGGCAA+GGG | 0.588995 | 2.3:-59479465 | MS.gene74535:CDS |
| GTCAAGGCATTCATTGAGGA+GGG | 0.593032 | 2.3:-59477629 | MS.gene74535:CDS |
| AGAATACGATTCCAATCTTG+AGG | 0.593260 | 2.3:+59480798 | None:intergenic |
| ACAAGAAGGGAAAACTTATG+TGG | 0.593833 | 2.3:-59473150 | MS.gene74535:CDS |
| AAAGGCTCCTCAAGCTGCAG+GGG | 0.596118 | 2.3:-59474107 | MS.gene74535:CDS |
| GCAAATTAGACGCCTAACAA+AGG | 0.601410 | 2.3:-59474125 | MS.gene74535:CDS |
| GGTCAAGGCATTCATTGAGG+AGG | 0.601452 | 2.3:-59477630 | MS.gene74535:CDS |
| GCCACTCAAAACGCTCGTCA+GGG | 0.607437 | 2.3:+59479709 | None:intergenic |
| GAAGAGAAACGACCAAGGAT+GGG | 0.608124 | 2.3:+59480824 | None:intergenic |
| AGGGGATTGGAAAGCTGCCG+AGG | 0.611014 | 2.3:-59477591 | MS.gene74535:CDS |
| TAGGCTCAATAGTGCAAAAG+GGG | 0.614822 | 2.3:+59479751 | None:intergenic |
| TTTCACAGCAGGACCTGATG+AGG | 0.615456 | 2.3:-59474773 | MS.gene74535:intron |
| TGGTTCGAGGTGCTCATGAG+GGG | 0.617191 | 2.3:-59479471 | MS.gene74535:CDS |
| TATTGAGCCTAATGAGGCAA+GGG | 0.617548 | 2.3:-59479739 | MS.gene74535:CDS |
| TATTTAGCCGCCTCATCAGG+AGG | 0.619128 | 2.3:+59475940 | None:intergenic |
| TTCTTCCCAAAATTCACACA+TGG | 0.624147 | 2.3:-59476371 | MS.gene74535:intron |
| GGAATTCAAAATCTCGACCT+CGG | 0.625649 | 2.3:+59477574 | None:intergenic |
| CTTGGCAGTAAGCAACTGGA+AGG | 0.630484 | 2.3:+59477553 | None:intergenic |
| CGACACTGTTGACCCTGTGA+GGG | 0.636940 | 2.3:-59479243 | MS.gene74535:CDS |
| AGATATGCCTCCTGATGAGG+CGG | 0.638742 | 2.3:-59475947 | MS.gene74535:CDS |
| ACGACACTGTTGACCCTGTG+AGG | 0.640959 | 2.3:-59479244 | MS.gene74535:CDS |
| TCCAGGGTCCAGGAACATGG+TGG | 0.661205 | 2.3:-59476015 | MS.gene74535:intron |
| GGTCAACAGTGTCGTCTACG+TGG | 0.682008 | 2.3:+59479252 | None:intergenic |
| GGGAAAAGATGTACGCCTAG+GGG | 0.687762 | 2.3:-59477609 | MS.gene74535:CDS |
| GGTGAGAAGAGAAACGACCA+AGG | 0.698806 | 2.3:+59480819 | None:intergenic |
| TAACCTCTAAATCCCTCACA+GGG | 0.708122 | 2.3:+59479231 | None:intergenic |
| TGAGGCGGCTAAATACTGTG+AGG | 0.765226 | 2.3:-59475932 | MS.gene74535:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr2.3 | gene | 59473091 | 59480891 | 59473091 | ID=MS.gene74535 |
| chr2.3 | mRNA | 59473091 | 59480891 | 59473091 | ID=MS.gene74535.t1;Parent=MS.gene74535 |
| chr2.3 | exon | 59480805 | 59480891 | 59480805 | ID=MS.gene74535.t1.exon1;Parent=MS.gene74535.t1 |
| chr2.3 | CDS | 59480805 | 59480891 | 59480805 | ID=cds.MS.gene74535.t1;Parent=MS.gene74535.t1 |
| chr2.3 | exon | 59479680 | 59479847 | 59479680 | ID=MS.gene74535.t1.exon2;Parent=MS.gene74535.t1 |
| chr2.3 | CDS | 59479680 | 59479847 | 59479680 | ID=cds.MS.gene74535.t1;Parent=MS.gene74535.t1 |
| chr2.3 | exon | 59479407 | 59479530 | 59479407 | ID=MS.gene74535.t1.exon3;Parent=MS.gene74535.t1 |
| chr2.3 | CDS | 59479407 | 59479530 | 59479407 | ID=cds.MS.gene74535.t1;Parent=MS.gene74535.t1 |
| chr2.3 | exon | 59479208 | 59479299 | 59479208 | ID=MS.gene74535.t1.exon4;Parent=MS.gene74535.t1 |
| chr2.3 | CDS | 59479208 | 59479299 | 59479208 | ID=cds.MS.gene74535.t1;Parent=MS.gene74535.t1 |
| chr2.3 | exon | 59478658 | 59478756 | 59478658 | ID=MS.gene74535.t1.exon5;Parent=MS.gene74535.t1 |
| chr2.3 | CDS | 59478658 | 59478756 | 59478658 | ID=cds.MS.gene74535.t1;Parent=MS.gene74535.t1 |
| chr2.3 | exon | 59477538 | 59477651 | 59477538 | ID=MS.gene74535.t1.exon6;Parent=MS.gene74535.t1 |
| chr2.3 | CDS | 59477538 | 59477651 | 59477538 | ID=cds.MS.gene74535.t1;Parent=MS.gene74535.t1 |
| chr2.3 | exon | 59476372 | 59476436 | 59476372 | ID=MS.gene74535.t1.exon7;Parent=MS.gene74535.t1 |
| chr2.3 | CDS | 59476372 | 59476436 | 59476372 | ID=cds.MS.gene74535.t1;Parent=MS.gene74535.t1 |
| chr2.3 | exon | 59475916 | 59476032 | 59475916 | ID=MS.gene74535.t1.exon8;Parent=MS.gene74535.t1 |
| chr2.3 | CDS | 59475916 | 59476032 | 59475916 | ID=cds.MS.gene74535.t1;Parent=MS.gene74535.t1 |
| chr2.3 | exon | 59474774 | 59474849 | 59474774 | ID=MS.gene74535.t1.exon9;Parent=MS.gene74535.t1 |
| chr2.3 | CDS | 59474774 | 59474849 | 59474774 | ID=cds.MS.gene74535.t1;Parent=MS.gene74535.t1 |
| chr2.3 | exon | 59474066 | 59474158 | 59474066 | ID=MS.gene74535.t1.exon10;Parent=MS.gene74535.t1 |
| chr2.3 | CDS | 59474066 | 59474158 | 59474066 | ID=cds.MS.gene74535.t1;Parent=MS.gene74535.t1 |
| chr2.3 | exon | 59473423 | 59473473 | 59473423 | ID=MS.gene74535.t1.exon11;Parent=MS.gene74535.t1 |
| chr2.3 | CDS | 59473423 | 59473473 | 59473423 | ID=cds.MS.gene74535.t1;Parent=MS.gene74535.t1 |
| chr2.3 | exon | 59473091 | 59473189 | 59473091 | ID=MS.gene74535.t1.exon12;Parent=MS.gene74535.t1 |
| chr2.3 | CDS | 59473091 | 59473189 | 59473091 | ID=cds.MS.gene74535.t1;Parent=MS.gene74535.t1 |
| Gene Sequence |
| Protein sequence |