Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene003309.t1 | XP_003594539.1 | 99.7 | 394 | 1 | 0 | 1 | 394 | 1 | 394 | 4.10E-227 | 797 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene003309.t1 | Q9SA73 | 85.0 | 394 | 59 | 0 | 1 | 394 | 1 | 394 | 1.1e-199 | 697.2 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene003309.t1 | G7IKV9 | 99.7 | 394 | 1 | 0 | 1 | 394 | 1 | 394 | 2.9e-227 | 797.0 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene003309 | MS.gene034044 | PPI |
| MS.gene003309 | MS.gene034046 | PPI |
| MS.gene77617 | MS.gene003309 | PPI |
| MS.gene003309 | MS.gene42992 | PPI |
| MS.gene003309 | MS.gene028573 | PPI |
| MS.gene003309 | MS.gene032415 | PPI |
| MS.gene003309 | MS.gene050582 | PPI |
| MS.gene22858 | MS.gene003309 | PPI |
| MS.gene003309 | MS.gene38917 | PPI |
| MS.gene003309 | MS.gene025968 | PPI |
| MS.gene003309 | MS.gene026793 | PPI |
| MS.gene003309 | MS.gene041968 | PPI |
| MS.gene79484 | MS.gene003309 | PPI |
| MS.gene003309 | MS.gene37310 | PPI |
| MS.gene003309 | MS.gene92155 | PPI |
| MS.gene039012 | MS.gene003309 | PPI |
| MS.gene38909 | MS.gene003309 | PPI |
| MS.gene003309 | MS.gene40160 | PPI |
| MS.gene003309 | MS.gene024505 | PPI |
| MS.gene003309 | MS.gene073967 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene003309.t1 | MTR_2g030370 | 99.746 | 394 | 1 | 0 | 1 | 394 | 1 | 394 | 0.0 | 813 |
| MS.gene003309.t1 | MTR_2g030335 | 99.213 | 127 | 1 | 0 | 1 | 127 | 1 | 127 | 4.37e-89 | 268 |
| MS.gene003309.t1 | MTR_1g023160 | 32.117 | 137 | 74 | 3 | 27 | 163 | 272 | 389 | 1.02e-12 | 69.7 |
| MS.gene003309.t1 | MTR_2g019790 | 30.986 | 142 | 77 | 3 | 27 | 167 | 321 | 442 | 2.09e-11 | 65.9 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene003309.t1 | AT1G30580 | 85.025 | 394 | 59 | 0 | 1 | 394 | 1 | 394 | 0.0 | 710 |
| MS.gene003309.t1 | AT1G56050 | 41.316 | 380 | 217 | 5 | 14 | 388 | 43 | 421 | 5.57e-95 | 291 |
| MS.gene003309.t1 | AT1G07615 | 34.000 | 100 | 49 | 1 | 27 | 126 | 306 | 388 | 8.86e-12 | 67.0 |
| MS.gene003309.t1 | AT5G18570 | 33.000 | 100 | 51 | 1 | 27 | 126 | 381 | 464 | 5.95e-11 | 64.7 |
Find 104 sgRNAs with CRISPR-Local
Find 0 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GAATCCAGTCTTTATTATTT+TGG | 0.087619 | 2.4:+59353236 | None:intergenic |
| GAAACTTGTTCTTCTTTCTT+TGG | 0.236801 | 2.4:+59354810 | None:intergenic |
| TACGTACCATGTGTGAATTT+TGG | 0.247433 | 2.4:+59354784 | None:intergenic |
| AGTGTAGACTTTCCAACATT+TGG | 0.320168 | 2.4:+59357693 | None:intergenic |
| AACTGGAGCTTCCTTCGATT+TGG | 0.332167 | 2.4:+59358718 | None:intergenic |
| TTCTCTTCTCACCTCAAGAT+TGG | 0.333366 | 2.4:-59358674 | MS.gene003309:CDS |
| TTTGTCCACCACCATGTTCC+TGG | 0.334504 | 2.4:+59354424 | None:intergenic |
| TGACCCTGTGAGGGATTTAG+AGG | 0.338036 | 2.4:-59357111 | MS.gene003309:CDS |
| CAGCTTGAGGAGCCTTTGTT+AGG | 0.339703 | 2.4:+59352535 | None:intergenic |
| CCAAGGATGGGTCGTTCAAC+TGG | 0.369239 | 2.4:+59358701 | None:intergenic |
| TCCTTCGATTTGGCGGATTT+AGG | 0.369949 | 2.4:+59358728 | None:intergenic |
| AGCCACTCAAAACGCTCATC+AGG | 0.372533 | 2.4:+59357585 | None:intergenic |
| ATTGGTTCGAGGTGCTCATC+AGG | 0.377843 | 2.4:-59357350 | MS.gene003309:CDS |
| ATCCCTTCTCAAAATCAGTA+TGG | 0.381594 | 2.4:+59352502 | None:intergenic |
| TCTCACATCCGGGCCGTTGA+TGG | 0.387031 | 2.4:-59357301 | MS.gene003309:CDS |
| GCTCATCAGGGGCAAGGGTT+GGG | 0.390614 | 2.4:-59357337 | MS.gene003309:CDS |
| TCGTCTACGTGGATAATATC+TGG | 0.394590 | 2.4:+59357140 | None:intergenic |
| TGCCAAGCCTGTTGTATACT+TGG | 0.397853 | 2.4:-59355925 | MS.gene003309:intron |
| ATTGTTTATTATTAGGCTGC+TGG | 0.416370 | 2.4:-59351607 | MS.gene003309:intron |
| CAGTATTTAGCCGCCTCATC+AGG | 0.422088 | 2.4:+59354354 | None:intergenic |
| CGAGCTTGAATGTTGTCAAA+AGG | 0.422523 | 2.4:-59356536 | MS.gene003309:intron |
| ATTAGGCTCAATAGTGCAAA+AGG | 0.425631 | 2.4:+59357626 | None:intergenic |
| ACATTGACCCTTGCCTCATT+AGG | 0.436232 | 2.4:+59357609 | None:intergenic |
| AAAATATAATGTCACCATCT+TGG | 0.441622 | 2.4:+59351551 | None:intergenic |
| ATGTGGATATTTACCTCATC+AGG | 0.442858 | 2.4:+59353177 | None:intergenic |
| CAGGCTTGGCAGTAAGCAAC+TGG | 0.446559 | 2.4:+59355937 | None:intergenic |
| AAGTTCAATGTTTCTGGTGG+AGG | 0.450367 | 2.4:-59351526 | MS.gene003309:CDS |
| TGGAGCTTCCTTCGATTTGG+CGG | 0.453358 | 2.4:+59358721 | None:intergenic |
| TTGTTTGGTAGGTGCATTTG+AGG | 0.455060 | 2.4:-59357165 | MS.gene003309:intron |
| AAGATGTACGCCTAGGGGAT+TGG | 0.461198 | 2.4:-59355992 | MS.gene003309:CDS |
| TGCTCATCAGGGGCAAGGGT+TGG | 0.462712 | 2.4:-59357338 | MS.gene003309:CDS |
| TATGTTACCAAGTATACAAC+AGG | 0.463776 | 2.4:+59355918 | None:intergenic |
| TTAGAAATCCATGACATAGC+TGG | 0.466153 | 2.4:-59357373 | MS.gene003309:CDS |
| CGAGGTGCTCATCAGGGGCA+AGG | 0.466156 | 2.4:-59357343 | MS.gene003309:CDS |
| TTTCAATACACTCACAAAGA+TGG | 0.470261 | 2.4:-59357670 | MS.gene003309:CDS |
| AGGTTATTACTGAAGAGTTA+CGG | 0.474516 | 2.4:-59357091 | MS.gene003309:CDS |
| ACATTTGTTCTCCAGGGTCC+AGG | 0.476574 | 2.4:-59354442 | MS.gene003309:intron |
| AATCCATGACATAGCTGGAT+TGG | 0.477150 | 2.4:-59357368 | MS.gene003309:CDS |
| TTCTCCAGGGTCCAGGAACA+TGG | 0.481367 | 2.4:-59354435 | MS.gene003309:intron |
| TGGAAGTGAGTCAGCTGTAA+AGG | 0.482331 | 2.4:-59351847 | MS.gene003309:intron |
| CTTCCCAAAATAATAAAGAC+TGG | 0.484849 | 2.4:-59353240 | MS.gene003309:CDS |
| CCAGTTGAACGACCCATCCT+TGG | 0.486370 | 2.4:-59358701 | MS.gene003309:CDS |
| GATGAAATTTGATGATCTAA+AGG | 0.491073 | 2.4:-59351874 | MS.gene003309:CDS |
| TTTGATGATCTAAAGGAACT+TGG | 0.496739 | 2.4:-59351867 | MS.gene003309:CDS |
| TTGCACTATTGAGCCTAATG+AGG | 0.504731 | 2.4:-59357622 | MS.gene003309:CDS |
| ACAAAGGCTCCTCAAGCTGC+AGG | 0.508694 | 2.4:-59352531 | MS.gene003309:CDS |
| CAGGTTGGTTTGCCAAATGT+TGG | 0.517974 | 2.4:-59357705 | MS.gene003309:CDS |
| AGAAGAGAAACGACCAAGGA+TGG | 0.519305 | 2.4:+59358688 | None:intergenic |
| TCCTAAATCCGCCAAATCGA+AGG | 0.520199 | 2.4:-59358729 | MS.gene003309:CDS |
| TACTGAAGAGTTACGGCTGA+AGG | 0.521340 | 2.4:-59357084 | MS.gene003309:intron |
| GCTGGAAAATATAAACAAGA+AGG | 0.524187 | 2.4:-59351589 | MS.gene003309:CDS |
| TTAGGCTCAATAGTGCAAAA+GGG | 0.530041 | 2.4:+59357627 | None:intergenic |
| TTCAAGTTCAATGTTTCTGG+TGG | 0.536287 | 2.4:-59351529 | MS.gene003309:CDS |
| TTGGTTCGAGGTGCTCATCA+GGG | 0.537760 | 2.4:-59357349 | MS.gene003309:CDS |
| CAAAAGGGGAAGTTCTCAGC+AGG | 0.538630 | 2.4:+59357642 | None:intergenic |
| GACATAGCTGGATTGGTTCG+AGG | 0.547428 | 2.4:-59357361 | MS.gene003309:CDS |
| ATAACCTCTAAATCCCTCAC+AGG | 0.552003 | 2.4:+59357107 | None:intergenic |
| GCTTCTTTCAGGTTAAGTGT+TGG | 0.554283 | 2.4:-59352569 | MS.gene003309:intron |
| AGGGAAAAGATGTACGCCTA+GGG | 0.554324 | 2.4:-59355998 | MS.gene003309:CDS |
| TTCGATTTGGCGGATTTAGG+AGG | 0.558249 | 2.4:+59358731 | None:intergenic |
| CGGCAGCTTTCCAATCCCCT+AGG | 0.561018 | 2.4:+59355982 | None:intergenic |
| AGTTCAATGTTTCTGGTGGA+GGG | 0.562003 | 2.4:-59351525 | MS.gene003309:CDS |
| TTCAGATATGCCTCCTGATG+AGG | 0.565036 | 2.4:-59354367 | MS.gene003309:CDS |
| AAAACTTATGTGGTCCAAGA+TGG | 0.567578 | 2.4:-59351565 | MS.gene003309:CDS |
| TGGATAGCCCCTGCAGCTTG+AGG | 0.571503 | 2.4:+59352522 | None:intergenic |
| GAGGGAAAAGATGTACGCCT+AGG | 0.572957 | 2.4:-59355999 | MS.gene003309:CDS |
| CAAAGGCTCCTCAAGCTGCA+GGG | 0.574970 | 2.4:-59352530 | MS.gene003309:CDS |
| TCAGGTCAAGGCATTCATTG+AGG | 0.575043 | 2.4:-59356021 | MS.gene003309:intron |
| GAACCAATCCAGCTATGTCA+TGG | 0.579932 | 2.4:+59357365 | None:intergenic |
| CTATTGAGCCTAATGAGGCA+AGG | 0.581575 | 2.4:-59357617 | MS.gene003309:CDS |
| GAAGGGATTTATTTGTGCTG+AGG | 0.581723 | 2.4:-59352487 | MS.gene003309:intron |
| CTGGAAAATATAAACAAGAA+GGG | 0.582742 | 2.4:-59351588 | MS.gene003309:CDS |
| GTGAGGCGAACAACGTTCAA+AGG | 0.582805 | 2.4:-59354332 | MS.gene003309:intron |
| TACCAAGTATACAACAGGCT+TGG | 0.583923 | 2.4:+59355923 | None:intergenic |
| AGGGTCCAGGAACATGGTGG+TGG | 0.584742 | 2.4:-59354429 | MS.gene003309:CDS |
| ATCTTGAAAAGAGCATGAAG+AGG | 0.584769 | 2.4:-59356582 | MS.gene003309:CDS |
| TTCTCTAAGACACAGCTGAA+AGG | 0.586644 | 2.4:+59354396 | None:intergenic |
| GAGGTGCTCATCAGGGGCAA+GGG | 0.591435 | 2.4:-59357342 | MS.gene003309:CDS |
| GTCAAGGCATTCATTGAGGA+GGG | 0.593032 | 2.4:-59356017 | MS.gene003309:CDS |
| AGAATACGATTCCAATCTTG+AGG | 0.593260 | 2.4:+59358663 | None:intergenic |
| ACAAGAAGGGAAAACTTATG+TGG | 0.593833 | 2.4:-59351575 | MS.gene003309:CDS |
| AAAGGCTCCTCAAGCTGCAG+GGG | 0.596118 | 2.4:-59352529 | MS.gene003309:CDS |
| GCAAATTAGACGCCTAACAA+AGG | 0.601410 | 2.4:-59352547 | MS.gene003309:CDS |
| GGTCAAGGCATTCATTGAGG+AGG | 0.601452 | 2.4:-59356018 | MS.gene003309:CDS |
| GAAGAGAAACGACCAAGGAT+GGG | 0.608124 | 2.4:+59358689 | None:intergenic |
| AGGGGATTGGAAAGCTGCCG+AGG | 0.611014 | 2.4:-59355979 | MS.gene003309:CDS |
| GCCACTCAAAACGCTCATCA+GGG | 0.613740 | 2.4:+59357586 | None:intergenic |
| TAGGCTCAATAGTGCAAAAG+GGG | 0.614822 | 2.4:+59357628 | None:intergenic |
| TTTCACAGCAGGACCTGATG+AGG | 0.615456 | 2.4:-59353190 | MS.gene003309:intron |
| TATTGAGCCTAATGAGGCAA+GGG | 0.617548 | 2.4:-59357616 | MS.gene003309:CDS |
| TATTTAGCCGCCTCATCAGG+AGG | 0.619128 | 2.4:+59354357 | None:intergenic |
| TGGTTCGAGGTGCTCATCAG+GGG | 0.622801 | 2.4:-59357348 | MS.gene003309:CDS |
| TTCTTCCCAAAATTCACACA+TGG | 0.624147 | 2.4:-59354790 | MS.gene003309:intron |
| GGAATTCAAAATCTCGACCT+CGG | 0.625649 | 2.4:+59355962 | None:intergenic |
| CTTGGCAGTAAGCAACTGGA+AGG | 0.630484 | 2.4:+59355941 | None:intergenic |
| CGACACTGTTGACCCTGTGA+GGG | 0.636940 | 2.4:-59357120 | MS.gene003309:CDS |
| AGATATGCCTCCTGATGAGG+CGG | 0.638742 | 2.4:-59354364 | MS.gene003309:CDS |
| ACGACACTGTTGACCCTGTG+AGG | 0.640959 | 2.4:-59357121 | MS.gene003309:CDS |
| TCCAGGGTCCAGGAACATGG+TGG | 0.661205 | 2.4:-59354432 | MS.gene003309:intron |
| GGTCAACAGTGTCGTCTACG+TGG | 0.682008 | 2.4:+59357129 | None:intergenic |
| GGGAAAAGATGTACGCCTAG+GGG | 0.687762 | 2.4:-59355997 | MS.gene003309:CDS |
| GGTGAGAAGAGAAACGACCA+AGG | 0.698806 | 2.4:+59358684 | None:intergenic |
| TAACCTCTAAATCCCTCACA+GGG | 0.708122 | 2.4:+59357108 | None:intergenic |
| TGAGGCGGCTAAATACTGTG+AGG | 0.765226 | 2.4:-59354349 | MS.gene003309:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr2.4 | gene | 59351516 | 59358756 | 59351516 | ID=MS.gene003309 |
| chr2.4 | mRNA | 59351516 | 59358756 | 59351516 | ID=MS.gene003309.t1;Parent=MS.gene003309 |
| chr2.4 | exon | 59358670 | 59358756 | 59358670 | ID=MS.gene003309.t1.exon1;Parent=MS.gene003309.t1 |
| chr2.4 | CDS | 59358670 | 59358756 | 59358670 | ID=cds.MS.gene003309.t1;Parent=MS.gene003309.t1 |
| chr2.4 | exon | 59357557 | 59357724 | 59357557 | ID=MS.gene003309.t1.exon2;Parent=MS.gene003309.t1 |
| chr2.4 | CDS | 59357557 | 59357724 | 59357557 | ID=cds.MS.gene003309.t1;Parent=MS.gene003309.t1 |
| chr2.4 | exon | 59357284 | 59357407 | 59357284 | ID=MS.gene003309.t1.exon3;Parent=MS.gene003309.t1 |
| chr2.4 | CDS | 59357284 | 59357407 | 59357284 | ID=cds.MS.gene003309.t1;Parent=MS.gene003309.t1 |
| chr2.4 | exon | 59357085 | 59357176 | 59357085 | ID=MS.gene003309.t1.exon4;Parent=MS.gene003309.t1 |
| chr2.4 | CDS | 59357085 | 59357176 | 59357085 | ID=cds.MS.gene003309.t1;Parent=MS.gene003309.t1 |
| chr2.4 | exon | 59356537 | 59356635 | 59356537 | ID=MS.gene003309.t1.exon5;Parent=MS.gene003309.t1 |
| chr2.4 | CDS | 59356537 | 59356635 | 59356537 | ID=cds.MS.gene003309.t1;Parent=MS.gene003309.t1 |
| chr2.4 | exon | 59355926 | 59356039 | 59355926 | ID=MS.gene003309.t1.exon6;Parent=MS.gene003309.t1 |
| chr2.4 | CDS | 59355926 | 59356039 | 59355926 | ID=cds.MS.gene003309.t1;Parent=MS.gene003309.t1 |
| chr2.4 | exon | 59354791 | 59354855 | 59354791 | ID=MS.gene003309.t1.exon7;Parent=MS.gene003309.t1 |
| chr2.4 | CDS | 59354791 | 59354855 | 59354791 | ID=cds.MS.gene003309.t1;Parent=MS.gene003309.t1 |
| chr2.4 | exon | 59354333 | 59354449 | 59354333 | ID=MS.gene003309.t1.exon8;Parent=MS.gene003309.t1 |
| chr2.4 | CDS | 59354333 | 59354449 | 59354333 | ID=cds.MS.gene003309.t1;Parent=MS.gene003309.t1 |
| chr2.4 | exon | 59353191 | 59353266 | 59353191 | ID=MS.gene003309.t1.exon9;Parent=MS.gene003309.t1 |
| chr2.4 | CDS | 59353191 | 59353266 | 59353191 | ID=cds.MS.gene003309.t1;Parent=MS.gene003309.t1 |
| chr2.4 | exon | 59352488 | 59352580 | 59352488 | ID=MS.gene003309.t1.exon10;Parent=MS.gene003309.t1 |
| chr2.4 | CDS | 59352488 | 59352580 | 59352488 | ID=cds.MS.gene003309.t1;Parent=MS.gene003309.t1 |
| chr2.4 | exon | 59351848 | 59351898 | 59351848 | ID=MS.gene003309.t1.exon11;Parent=MS.gene003309.t1 |
| chr2.4 | CDS | 59351848 | 59351898 | 59351848 | ID=cds.MS.gene003309.t1;Parent=MS.gene003309.t1 |
| chr2.4 | exon | 59351516 | 59351614 | 59351516 | ID=MS.gene003309.t1.exon12;Parent=MS.gene003309.t1 |
| chr2.4 | CDS | 59351516 | 59351614 | 59351516 | ID=cds.MS.gene003309.t1;Parent=MS.gene003309.t1 |
| Gene Sequence |
| Protein sequence |