Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene033202.t1 | RHN63559.1 | 96.3 | 348 | 13 | 0 | 1 | 348 | 1 | 348 | 1.40E-162 | 582.4 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene033202.t1 | P34909 | 44.4 | 54 | 27 | 1 | 273 | 323 | 33 | 86 | 1.4e-09 | 65.5 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene033202.t1 | A0A396IDB7 | 96.3 | 348 | 13 | 0 | 1 | 348 | 1 | 348 | 1.0e-162 | 582.4 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene033202 | MS.gene43272 | PPI |
| MS.gene033202 | MS.gene56896 | PPI |
| MS.gene033202 | MS.gene60326 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene033202.t1 | MTR_4g107090 | 94.737 | 247 | 13 | 0 | 1 | 247 | 1 | 247 | 1.65e-124 | 358 |
| MS.gene033202.t1 | MTR_6g008950 | 43.910 | 312 | 122 | 12 | 22 | 319 | 14 | 286 | 3.66e-57 | 188 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene033202.t1 | AT5G62910 | 44.413 | 358 | 152 | 10 | 1 | 345 | 1 | 324 | 1.02e-69 | 221 |
| MS.gene033202.t1 | AT5G62910 | 44.413 | 358 | 152 | 10 | 1 | 345 | 1 | 324 | 1.02e-69 | 221 |
| MS.gene033202.t1 | AT3G48070 | 46.610 | 354 | 148 | 11 | 1 | 348 | 1 | 319 | 4.41e-66 | 211 |
| MS.gene033202.t1 | AT3G48070 | 46.023 | 352 | 151 | 10 | 1 | 347 | 1 | 318 | 5.88e-65 | 209 |
| MS.gene033202.t1 | AT3G48070 | 48.047 | 256 | 100 | 8 | 96 | 347 | 43 | 269 | 1.41e-44 | 155 |
| MS.gene033202.t1 | AT1G74870 | 30.492 | 305 | 138 | 7 | 22 | 319 | 21 | 258 | 8.00e-27 | 107 |
| MS.gene033202.t1 | AT2G28540 | 42.105 | 57 | 27 | 1 | 273 | 323 | 9 | 65 | 9.85e-11 | 63.5 |
Find 111 sgRNAs with CRISPR-Local
Find 133 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CCTCCAAGCTTTGCCATTAC+TGG | 0.202687 | 8.3:-16631927 | None:intergenic |
| GTGACTGATGGTTTGAATTT+AGG | 0.215191 | 8.3:+16631857 | MS.gene033202:CDS |
| AGTAGTGGTGGGTGTTTCTC+TGG | 0.244371 | 8.3:+16631662 | MS.gene033202:CDS |
| CTTCAATTTCGCGGACCTAT+TGG | 0.323866 | 8.3:-16631247 | None:intergenic |
| GAGCAGGATGCTCGTTGTCC+TGG | 0.324362 | 8.3:+16632163 | MS.gene033202:CDS |
| TCAAGATCCTCACAGCAAAT+TGG | 0.334616 | 8.3:-16632067 | None:intergenic |
| GTGTTGTGTGGCAATGATTC+CGG | 0.338325 | 8.3:+16631587 | MS.gene033202:CDS |
| CCACACAACACACTACTATT+AGG | 0.338725 | 8.3:-16631575 | None:intergenic |
| CGTTCCACCACTCCCTGGTT+TGG | 0.368101 | 8.3:-16631891 | None:intergenic |
| CTGTGAGGATCTTGATTTAA+CGG | 0.370410 | 8.3:+16632075 | MS.gene033202:CDS |
| TGGTTTGAATTTAGGATGTT+TGG | 0.374976 | 8.3:+16631865 | MS.gene033202:CDS |
| GATGAATCCGTTTCTGCAAC+GGG | 0.375384 | 8.3:-16631827 | None:intergenic |
| ACTCCGAATCACTGTCTTGA+TGG | 0.383993 | 8.3:-16631529 | None:intergenic |
| AAGAAGAAGGGTTGCAAGGA+TGG | 0.391810 | 8.3:+16631398 | MS.gene033202:CDS |
| CTCACAGCAAATTGGACAAT+TGG | 0.402448 | 8.3:-16632059 | None:intergenic |
| CCACAAGAGGATTCTTGAGC+AGG | 0.406130 | 8.3:+16632147 | MS.gene033202:CDS |
| ATGATGGATGCTTGGATGAT+TGG | 0.408221 | 8.3:+16631744 | MS.gene033202:CDS |
| CGTTTGCTCTGTTTCCCCAC+TGG | 0.408315 | 8.3:-16631452 | None:intergenic |
| GAAACAGAGCAAACGTGAAT+TGG | 0.411752 | 8.3:+16631460 | MS.gene033202:CDS |
| TGATGGATGCTTGGATGATT+GGG | 0.423751 | 8.3:+16631745 | MS.gene033202:CDS |
| ACACTACTATTAGGACTGAT+AGG | 0.429535 | 8.3:-16631566 | None:intergenic |
| GCATACTATGCTGTTTCGAC+AGG | 0.434123 | 8.3:-16631985 | None:intergenic |
| ATGGAGGTGGCCTTACTCTT+CGG | 0.440233 | 8.3:+16632236 | MS.gene033202:CDS |
| AGAAGTAGAACATGAGGAGG+AGG | 0.445552 | 8.3:+16631718 | MS.gene033202:CDS |
| GAATGAACCCGTTGCAGAAA+CGG | 0.447105 | 8.3:+16631820 | MS.gene033202:CDS |
| GAGTGGTGGAACGGTTCCTC+GGG | 0.449106 | 8.3:+16631901 | MS.gene033202:CDS |
| TGTTGTGTGGCAATGATTCC+GGG | 0.450115 | 8.3:+16631588 | MS.gene033202:CDS |
| GTGTTAGCGGCGGAAGGAAT+CGG | 0.452634 | 8.3:-16631104 | None:intergenic |
| CCTCCTACAAAACGTGGATT+CGG | 0.456274 | 8.3:-16632007 | None:intergenic |
| GGAGTGGTGGAACGGTTCCT+CGG | 0.457706 | 8.3:+16631900 | MS.gene033202:CDS |
| AGCAGGATGCTCGTTGTCCT+GGG | 0.459006 | 8.3:+16632164 | MS.gene033202:CDS |
| GCCAGGGTTCTTGGTGTTAG+CGG | 0.468562 | 8.3:-16631117 | None:intergenic |
| GAAGGGTTGCAAGGATGGAT+TGG | 0.469248 | 8.3:+16631403 | MS.gene033202:CDS |
| AGTAGTAGTTCTAGTAGTGG+TGG | 0.477973 | 8.3:+16631650 | MS.gene033202:CDS |
| CATGTGCCGTCGTCGCCAGT+GGG | 0.478008 | 8.3:+16631437 | MS.gene033202:CDS |
| CTATGCTGTTTCGACAGGTT+GGG | 0.479061 | 8.3:-16631980 | None:intergenic |
| TTCAGGTGCGGTGAAGAAGA+AGG | 0.484533 | 8.3:+16631385 | MS.gene033202:intron |
| ATGCTCGTTGTCCTGGGTGC+AGG | 0.487799 | 8.3:+16632170 | MS.gene033202:CDS |
| GGATGTTTGGATTCCAAACC+AGG | 0.490028 | 8.3:+16631878 | MS.gene033202:CDS |
| CTTATACTGCTTCAATTTCG+CGG | 0.494651 | 8.3:-16631256 | None:intergenic |
| CCAGTAATGGCAAAGCTTGG+AGG | 0.496535 | 8.3:+16631927 | MS.gene033202:CDS |
| CAAACGTGAATTGGAGAAAG+TGG | 0.497957 | 8.3:+16631469 | MS.gene033202:CDS |
| TGGCACAGACATGCGAGACC+AGG | 0.500008 | 8.3:-16632035 | None:intergenic |
| GGAGGATGATGATGGATGCT+TGG | 0.501682 | 8.3:+16631736 | MS.gene033202:CDS |
| GTAGTGGTGGGTGTTTCTCT+GGG | 0.502450 | 8.3:+16631663 | MS.gene033202:CDS |
| CCACTGGCGACGACGGCACA+TGG | 0.507430 | 8.3:-16631436 | None:intergenic |
| CGGAACGGCGGCGATTGAAT+CGG | 0.509579 | 8.3:-16631084 | None:intergenic |
| CCATGTGCCGTCGTCGCCAG+TGG | 0.516220 | 8.3:+16631436 | MS.gene033202:CDS |
| ACTATGCTGTTTCGACAGGT+TGG | 0.517407 | 8.3:-16631981 | None:intergenic |
| AACGAGCCAACCGAAGAGTA+AGG | 0.518031 | 8.3:-16632246 | None:intergenic |
| CATGAGGAGGAGGATGATGA+TGG | 0.519831 | 8.3:+16631728 | MS.gene033202:CDS |
| GAAGCAAGTGTGCATGGAGG+TGG | 0.520200 | 8.3:+16632223 | MS.gene033202:CDS |
| CTTGGATGATTGGGAGGCTG+TGG | 0.524760 | 8.3:+16631754 | MS.gene033202:CDS |
| TGAAGAAGAAGTAGAACATG+AGG | 0.527036 | 8.3:+16631712 | MS.gene033202:CDS |
| AGATGAATCCGTTTCTGCAA+CGG | 0.528437 | 8.3:-16631828 | None:intergenic |
| CTCTGGGAATATTACAGAAG+AGG | 0.529198 | 8.3:+16631679 | MS.gene033202:CDS |
| CATCCAGTAATGGCAAAGCT+TGG | 0.537321 | 8.3:+16631924 | MS.gene033202:CDS |
| GACAGGTTGGGTAAAGTCTG+AGG | 0.544161 | 8.3:-16631968 | None:intergenic |
| GATCCATCAAGACAGTGATT+CGG | 0.544172 | 8.3:+16631526 | MS.gene033202:CDS |
| TTCTTGGTGTTAGCGGCGGA+AGG | 0.545412 | 8.3:-16631110 | None:intergenic |
| AGGTGGCCTTACTCTTCGGT+TGG | 0.546508 | 8.3:+16632240 | MS.gene033202:CDS |
| CAGTAATGGCAAAGCTTGGA+GGG | 0.550530 | 8.3:+16631928 | MS.gene033202:CDS |
| TTGATGCGCGTCGTGAACAA+TGG | 0.554675 | 8.3:+16631280 | MS.gene033202:CDS |
| TTGGATTCCAAACCAGGGAG+TGG | 0.557492 | 8.3:+16631884 | MS.gene033202:CDS |
| TCAGGTGCGGTGAAGAAGAA+GGG | 0.558988 | 8.3:+16631386 | MS.gene033202:intron |
| GGAACCGTTCCACCACTCCC+TGG | 0.559516 | 8.3:-16631896 | None:intergenic |
| GGCGAGGCGTAGAGGTGGAG+AGG | 0.561849 | 8.3:+16631493 | MS.gene033202:CDS |
| AGAAGAAGTAGAACATGAGG+AGG | 0.564899 | 8.3:+16631715 | MS.gene033202:CDS |
| ACTACCAGTGAAATTCGTCC+CGG | 0.566478 | 8.3:-16631606 | None:intergenic |
| TCATCTTGTGAAGTGACTGA+TGG | 0.567881 | 8.3:+16631845 | MS.gene033202:CDS |
| GATTCCGGGACGAATTTCAC+TGG | 0.570168 | 8.3:+16631602 | MS.gene033202:CDS |
| GTTCCTCGGGCATCCAGTAA+TGG | 0.570292 | 8.3:+16631914 | MS.gene033202:CDS |
| GGCTCTATGCTTCTCATCGG+CGG | 0.570378 | 8.3:-16631789 | None:intergenic |
| GATTCCAAACCAGGGAGTGG+TGG | 0.572211 | 8.3:+16631887 | MS.gene033202:CDS |
| ACACTTGCTTCTGTCTCGAT+AGG | 0.572811 | 8.3:-16632211 | None:intergenic |
| TTCACTGGTAGTAGCAGTGG+TGG | 0.572834 | 8.3:+16631617 | MS.gene033202:CDS |
| GTAGTAGTTCTAGTAGTGGT+GGG | 0.574175 | 8.3:+16631651 | MS.gene033202:CDS |
| AAACGTGAATTGGAGAAAGT+GGG | 0.580491 | 8.3:+16631470 | MS.gene033202:CDS |
| GCCGCTAACACCAAGAACCC+TGG | 0.580532 | 8.3:+16631116 | MS.gene033202:CDS |
| AGGGTTCTTGGTGTTAGCGG+CGG | 0.581566 | 8.3:-16631114 | None:intergenic |
| CAGCAAATTGGACAATTGGA+TGG | 0.582722 | 8.3:-16632055 | None:intergenic |
| GAGACAGAAGCAAGTGTGCA+TGG | 0.583579 | 8.3:+16632217 | MS.gene033202:CDS |
| GGACTGATAGGACTGTTTGA+CGG | 0.584911 | 8.3:-16631554 | None:intergenic |
| AACGGGTTCATTCTGTGAAG+AGG | 0.588593 | 8.3:-16631810 | None:intergenic |
| AGCAGTAGTAGTTCTAGTAG+TGG | 0.604603 | 8.3:+16631647 | MS.gene033202:CDS |
| CGTGAACAATGGCTATCTCA+AGG | 0.607296 | 8.3:+16631291 | MS.gene033202:CDS |
| GGCGATTGAATCGGAAACCA+TGG | 0.614198 | 8.3:-16631075 | None:intergenic |
| CCTGCTCAAGAATCCTCTTG+TGG | 0.614452 | 8.3:-16632147 | None:intergenic |
| TGTTTCCCCACTGGCGACGA+CGG | 0.617264 | 8.3:-16631443 | None:intergenic |
| AGAGGCTCTATGCTTCTCAT+CGG | 0.622264 | 8.3:-16631792 | None:intergenic |
| GGCACAGACATGCGAGACCA+GGG | 0.623059 | 8.3:-16632034 | None:intergenic |
| AGCCGAAAACCACAATTGCA+CGG | 0.626352 | 8.3:-16632112 | None:intergenic |
| ACAGGTTGGGTAAAGTCTGA+GGG | 0.629189 | 8.3:-16631967 | None:intergenic |
| AACGTGAATTGGAGAAAGTG+GGG | 0.634840 | 8.3:+16631471 | MS.gene033202:CDS |
| CAAACCAGGGAGTGGTGGAA+CGG | 0.635703 | 8.3:+16631892 | MS.gene033202:CDS |
| TCATATTGCTTCCTGCACCC+AGG | 0.637371 | 8.3:-16632181 | None:intergenic |
| AATTTCACTGGTAGTAGCAG+TGG | 0.639931 | 8.3:+16631614 | MS.gene033202:CDS |
| CAATTGTCCAATTTGCTGTG+AGG | 0.649475 | 8.3:+16632060 | MS.gene033202:CDS |
| GGTGAAGAAGAAGGGTTGCA+AGG | 0.653357 | 8.3:+16631394 | MS.gene033202:CDS |
| ATGTGCCGTCGTCGCCAGTG+GGG | 0.653421 | 8.3:+16631438 | MS.gene033202:CDS |
| GGCGGAAGGAATCGGAACGG+CGG | 0.658597 | 8.3:-16631096 | None:intergenic |
| GTTCTGTTAGCATGATCGAA+AGG | 0.664821 | 8.3:+16632266 | MS.gene033202:CDS |
| GGAACCCCTCCTACAAAACG+TGG | 0.666447 | 8.3:-16632013 | None:intergenic |
| TGGATGCTTGGATGATTGGG+AGG | 0.674598 | 8.3:+16631748 | MS.gene033202:CDS |
| TTGCCATTACTGGATGCCCG+AGG | 0.677388 | 8.3:-16631917 | None:intergenic |
| GATGTTTGGATTCCAAACCA+GGG | 0.680935 | 8.3:+16631879 | MS.gene033202:CDS |
| AGCGGCGGAAGGAATCGGAA+CGG | 0.682697 | 8.3:-16631099 | None:intergenic |
| ACGTGAATTGGAGAAAGTGG+GGG | 0.693905 | 8.3:+16631472 | MS.gene033202:CDS |
| GGTTGGGTAAAGTCTGAGGG+CGG | 0.713101 | 8.3:-16631964 | None:intergenic |
| CCTAATAGTAGTGTGTTGTG+TGG | 0.739406 | 8.3:+16631575 | MS.gene033202:CDS |
| ACAGAAGCAAGTGTGCATGG+AGG | 0.753039 | 8.3:+16632220 | MS.gene033202:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | GAAAATTATATAATCGAAAT+TGG | - | chr8.3:16631170-16631189 | None:intergenic | 15.0% |
| !!! | TAATTTTGTTATCTTTGTTA+TGG | + | chr8.3:16631360-16631379 | MS.gene033202:intron | 15.0% |
| !!! | CGATTTTTGTTTTGATCTAA+TGG | + | chr8.3:16631332-16631351 | MS.gene033202:intron | 25.0% |
| !!! | TTATCTTTGTTATGGTTTTC+AGG | + | chr8.3:16631368-16631387 | MS.gene033202:intron | 25.0% |
| ! | AATTCGATTTTCAGACCAAT+AGG | + | chr8.3:16631232-16631251 | MS.gene033202:intron | 30.0% |
| ! | TGGTTTGAATTTAGGATGTT+TGG | + | chr8.3:16631865-16631884 | MS.gene033202:CDS | 30.0% |
| AAACGTGAATTGGAGAAAGT+GGG | + | chr8.3:16631470-16631489 | MS.gene033202:CDS | 35.0% | |
| ACACTACTATTAGGACTGAT+AGG | - | chr8.3:16631569-16631588 | None:intergenic | 35.0% | |
| CTGTGAGGATCTTGATTTAA+CGG | + | chr8.3:16632075-16632094 | MS.gene033202:CDS | 35.0% | |
| CTTATACTGCTTCAATTTCG+CGG | - | chr8.3:16631259-16631278 | None:intergenic | 35.0% | |
| GTGACTGATGGTTTGAATTT+AGG | + | chr8.3:16631857-16631876 | MS.gene033202:CDS | 35.0% | |
| TGAAGAAGAAGTAGAACATG+AGG | + | chr8.3:16631712-16631731 | MS.gene033202:CDS | 35.0% | |
| !!! | TTTGTTATGGTTTTCAGGTG+CGG | + | chr8.3:16631373-16631392 | MS.gene033202:intron | 35.0% |
| AACGTGAATTGGAGAAAGTG+GGG | + | chr8.3:16631471-16631490 | MS.gene033202:CDS | 40.0% | |
| AATTTCACTGGTAGTAGCAG+TGG | + | chr8.3:16631614-16631633 | MS.gene033202:CDS | 40.0% | |
| AGAAGAAGTAGAACATGAGG+AGG | + | chr8.3:16631715-16631734 | MS.gene033202:CDS | 40.0% | |
| AGATGAATCCGTTTCTGCAA+CGG | - | chr8.3:16631831-16631850 | None:intergenic | 40.0% | |
| CAAACGTGAATTGGAGAAAG+TGG | + | chr8.3:16631469-16631488 | MS.gene033202:CDS | 40.0% | |
| CAGCAAATTGGACAATTGGA+TGG | - | chr8.3:16632058-16632077 | None:intergenic | 40.0% | |
| CCACACAACACACTACTATT+AGG | - | chr8.3:16631578-16631597 | None:intergenic | 40.0% | |
| CCTAATAGTAGTGTGTTGTG+TGG | + | chr8.3:16631575-16631594 | MS.gene033202:CDS | 40.0% | |
| CTCACAGCAAATTGGACAAT+TGG | - | chr8.3:16632062-16632081 | None:intergenic | 40.0% | |
| GAAACAGAGCAAACGTGAAT+TGG | + | chr8.3:16631460-16631479 | MS.gene033202:CDS | 40.0% | |
| GATCCATCAAGACAGTGATT+CGG | + | chr8.3:16631526-16631545 | MS.gene033202:CDS | 40.0% | |
| GATGTTTGGATTCCAAACCA+GGG | + | chr8.3:16631879-16631898 | MS.gene033202:CDS | 40.0% | |
| GTTCTGTTAGCATGATCGAA+AGG | + | chr8.3:16632266-16632285 | MS.gene033202:CDS | 40.0% | |
| TCAAGATCCTCACAGCAAAT+TGG | - | chr8.3:16632070-16632089 | None:intergenic | 40.0% | |
| TCATCTTGTGAAGTGACTGA+TGG | + | chr8.3:16631845-16631864 | MS.gene033202:CDS | 40.0% | |
| ! | AGTTTTCTTCCGTGCAATTG+TGG | + | chr8.3:16632103-16632122 | MS.gene033202:CDS | 40.0% |
| ! | CTCTGGGAATATTACAGAAG+AGG | + | chr8.3:16631679-16631698 | MS.gene033202:CDS | 40.0% |
| ! | TGATGGATGCTTGGATGATT+GGG | + | chr8.3:16631745-16631764 | MS.gene033202:CDS | 40.0% |
| ! | TTACCCTCTTCTTTTTGCCA+GGG | - | chr8.3:16631136-16631155 | None:intergenic | 40.0% |
| ! | TTCCGTGCAATTGTGGTTTT+CGG | + | chr8.3:16632110-16632129 | MS.gene033202:CDS | 40.0% |
| ! | TTTGTCTCTTTTGCCACAAG+AGG | + | chr8.3:16632134-16632153 | MS.gene033202:CDS | 40.0% |
| !! | AGCAGTAGTAGTTCTAGTAG+TGG | + | chr8.3:16631647-16631666 | MS.gene033202:CDS | 40.0% |
| !! | AGTAGTAGTTCTAGTAGTGG+TGG | + | chr8.3:16631650-16631669 | MS.gene033202:CDS | 40.0% |
| !! | ATGATGGATGCTTGGATGAT+TGG | + | chr8.3:16631744-16631763 | MS.gene033202:CDS | 40.0% |
| !! | CAATTGTCCAATTTGCTGTG+AGG | + | chr8.3:16632060-16632079 | MS.gene033202:CDS | 40.0% |
| !! | GTAGTAGTTCTAGTAGTGGT+GGG | + | chr8.3:16631651-16631670 | MS.gene033202:CDS | 40.0% |
| AAGAAGAAGGGTTGCAAGGA+TGG | + | chr8.3:16631398-16631417 | MS.gene033202:CDS | 45.0% | |
| ACACTTGCTTCTGTCTCGAT+AGG | - | chr8.3:16632214-16632233 | None:intergenic | 45.0% | |
| ACGTGAATTGGAGAAAGTGG+GGG | + | chr8.3:16631472-16631491 | MS.gene033202:CDS | 45.0% | |
| ACTACCAGTGAAATTCGTCC+CGG | - | chr8.3:16631609-16631628 | None:intergenic | 45.0% | |
| ACTCCGAATCACTGTCTTGA+TGG | - | chr8.3:16631532-16631551 | None:intergenic | 45.0% | |
| AGAACCCTGGCAAAAAGAAG+AGG | + | chr8.3:16631129-16631148 | MS.gene033202:CDS | 45.0% | |
| AGAAGTAGAACATGAGGAGG+AGG | + | chr8.3:16631718-16631737 | MS.gene033202:CDS | 45.0% | |
| AGAGGCTCTATGCTTCTCAT+CGG | - | chr8.3:16631795-16631814 | None:intergenic | 45.0% | |
| AGCCGAAAACCACAATTGCA+CGG | - | chr8.3:16632115-16632134 | None:intergenic | 45.0% | |
| CAGTAATGGCAAAGCTTGGA+GGG | + | chr8.3:16631928-16631947 | MS.gene033202:CDS | 45.0% | |
| CATCCAGTAATGGCAAAGCT+TGG | + | chr8.3:16631924-16631943 | MS.gene033202:CDS | 45.0% | |
| CCTCCTACAAAACGTGGATT+CGG | - | chr8.3:16632010-16632029 | None:intergenic | 45.0% | |
| CGTGAACAATGGCTATCTCA+AGG | + | chr8.3:16631291-16631310 | MS.gene033202:CDS | 45.0% | |
| CTGGCAAAAAGAAGAGGGTA+AGG | + | chr8.3:16631135-16631154 | MS.gene033202:intron | 45.0% | |
| CTTCAATTTCGCGGACCTAT+TGG | - | chr8.3:16631250-16631269 | None:intergenic | 45.0% | |
| GAACCCTGGCAAAAAGAAGA+GGG | + | chr8.3:16631130-16631149 | MS.gene033202:CDS | 45.0% | |
| GAATGAACCCGTTGCAGAAA+CGG | + | chr8.3:16631820-16631839 | MS.gene033202:CDS | 45.0% | |
| GATGAATCCGTTTCTGCAAC+GGG | - | chr8.3:16631830-16631849 | None:intergenic | 45.0% | |
| GGACTGATAGGACTGTTTGA+CGG | - | chr8.3:16631557-16631576 | None:intergenic | 45.0% | |
| GGATGTTTGGATTCCAAACC+AGG | + | chr8.3:16631878-16631897 | MS.gene033202:CDS | 45.0% | |
| GTGTTGTGTGGCAATGATTC+CGG | + | chr8.3:16631587-16631606 | MS.gene033202:CDS | 45.0% | |
| TGTTGTGTGGCAATGATTCC+GGG | + | chr8.3:16631588-16631607 | MS.gene033202:CDS | 45.0% | |
| ! | AACGGGTTCATTCTGTGAAG+AGG | - | chr8.3:16631813-16631832 | None:intergenic | 45.0% |
| ! | ACAGGTTGGGTAAAGTCTGA+GGG | - | chr8.3:16631970-16631989 | None:intergenic | 45.0% |
| ! | ATGCCGAATCCACGTTTTGT+AGG | + | chr8.3:16632004-16632023 | MS.gene033202:CDS | 45.0% |
| ! | CGAATCCACGTTTTGTAGGA+GGG | + | chr8.3:16632008-16632027 | MS.gene033202:CDS | 45.0% |
| ! | CTTACCCTCTTCTTTTTGCC+AGG | - | chr8.3:16631137-16631156 | None:intergenic | 45.0% |
| ! | CTTCTTTTTGCCAGGGTTCT+TGG | - | chr8.3:16631129-16631148 | None:intergenic | 45.0% |
| ! | GAATCCACGTTTTGTAGGAG+GGG | + | chr8.3:16632009-16632028 | MS.gene033202:CDS | 45.0% |
| !! | ACTATGCTGTTTCGACAGGT+TGG | - | chr8.3:16631984-16632003 | None:intergenic | 45.0% |
| !! | CTATGCTGTTTCGACAGGTT+GGG | - | chr8.3:16631983-16632002 | None:intergenic | 45.0% |
| !! | GCATACTATGCTGTTTCGAC+AGG | - | chr8.3:16631988-16632007 | None:intergenic | 45.0% |
| AACGAGCCAACCGAAGAGTA+AGG | - | chr8.3:16632249-16632268 | None:intergenic | 50.0% | |
| ACAGAAGCAAGTGTGCATGG+AGG | + | chr8.3:16632220-16632239 | MS.gene033202:CDS | 50.0% | |
| CATGAGGAGGAGGATGATGA+TGG | + | chr8.3:16631728-16631747 | MS.gene033202:CDS | 50.0% | |
| CCACAAGAGGATTCTTGAGC+AGG | + | chr8.3:16632147-16632166 | MS.gene033202:CDS | 50.0% | |
| CCAGTAATGGCAAAGCTTGG+AGG | + | chr8.3:16631927-16631946 | MS.gene033202:CDS | 50.0% | |
| CCTCCAAGCTTTGCCATTAC+TGG | - | chr8.3:16631930-16631949 | None:intergenic | 50.0% | |
| CCTGCTCAAGAATCCTCTTG+TGG | - | chr8.3:16632150-16632169 | None:intergenic | 50.0% | |
| GAAGGGTTGCAAGGATGGAT+TGG | + | chr8.3:16631403-16631422 | MS.gene033202:CDS | 50.0% | |
| GAGACAGAAGCAAGTGTGCA+TGG | + | chr8.3:16632217-16632236 | MS.gene033202:CDS | 50.0% | |
| GATTCCGGGACGAATTTCAC+TGG | + | chr8.3:16631602-16631621 | MS.gene033202:CDS | 50.0% | |
| GGTGAAGAAGAAGGGTTGCA+AGG | + | chr8.3:16631394-16631413 | MS.gene033202:CDS | 50.0% | |
| TCAGGTGCGGTGAAGAAGAA+GGG | + | chr8.3:16631386-16631405 | MS.gene033202:intron | 50.0% | |
| TCATATTGCTTCCTGCACCC+AGG | - | chr8.3:16632184-16632203 | None:intergenic | 50.0% | |
| TGGATGCTTGGATGATTGGG+AGG | + | chr8.3:16631748-16631767 | MS.gene033202:CDS | 50.0% | |
| TTCACTGGTAGTAGCAGTGG+TGG | + | chr8.3:16631617-16631636 | MS.gene033202:CDS | 50.0% | |
| TTCAGGTGCGGTGAAGAAGA+AGG | + | chr8.3:16631385-16631404 | MS.gene033202:intron | 50.0% | |
| TTGATGCGCGTCGTGAACAA+TGG | + | chr8.3:16631280-16631299 | MS.gene033202:CDS | 50.0% | |
| TTGGATTCCAAACCAGGGAG+TGG | + | chr8.3:16631884-16631903 | MS.gene033202:CDS | 50.0% | |
| ! | ATGGAGGTGGCCTTACTCTT+CGG | + | chr8.3:16632236-16632255 | MS.gene033202:CDS | 50.0% |
| ! | CCGAATCCACGTTTTGTAGG+AGG | + | chr8.3:16632007-16632026 | MS.gene033202:CDS | 50.0% |
| ! | GACAGGTTGGGTAAAGTCTG+AGG | - | chr8.3:16631971-16631990 | None:intergenic | 50.0% |
| !! | AGTAGTGGTGGGTGTTTCTC+TGG | + | chr8.3:16631662-16631681 | MS.gene033202:CDS | 50.0% |
| !! | GGAGGATGATGATGGATGCT+TGG | + | chr8.3:16631736-16631755 | MS.gene033202:CDS | 50.0% |
| !! | GTAGTGGTGGGTGTTTCTCT+GGG | + | chr8.3:16631663-16631682 | MS.gene033202:CDS | 50.0% |
| AATTGGAGAAAGTGGGGGCG+AGG | + | chr8.3:16631477-16631496 | MS.gene033202:CDS | 55.0% | |
| AGCAGGATGCTCGTTGTCCT+GGG | + | chr8.3:16632164-16632183 | MS.gene033202:CDS | 55.0% | |
| CGTTTGCTCTGTTTCCCCAC+TGG | - | chr8.3:16631455-16631474 | None:intergenic | 55.0% | |
| CTTGGATGATTGGGAGGCTG+TGG | + | chr8.3:16631754-16631773 | MS.gene033202:CDS | 55.0% | |
| GAAGCAAGTGTGCATGGAGG+TGG | + | chr8.3:16632223-16632242 | MS.gene033202:CDS | 55.0% | |
| GATTCCAAACCAGGGAGTGG+TGG | + | chr8.3:16631887-16631906 | MS.gene033202:CDS | 55.0% | |
| GGAACCCCTCCTACAAAACG+TGG | - | chr8.3:16632016-16632035 | None:intergenic | 55.0% | |
| GGCTCTATGCTTCTCATCGG+CGG | - | chr8.3:16631792-16631811 | None:intergenic | 55.0% | |
| GGTTGGGTAAAGTCTGAGGG+CGG | - | chr8.3:16631967-16631986 | None:intergenic | 55.0% | |
| GTGTTAGCGGCGGAAGGAAT+CGG | - | chr8.3:16631107-16631126 | None:intergenic | 55.0% | |
| GTTCCTCGGGCATCCAGTAA+TGG | + | chr8.3:16631914-16631933 | MS.gene033202:CDS | 55.0% | |
| TTGCCATTACTGGATGCCCG+AGG | - | chr8.3:16631920-16631939 | None:intergenic | 55.0% | |
| ! | AGGTGGCCTTACTCTTCGGT+TGG | + | chr8.3:16632240-16632259 | MS.gene033202:CDS | 55.0% |
| ! | CAAACCAGGGAGTGGTGGAA+CGG | + | chr8.3:16631892-16631911 | MS.gene033202:CDS | 55.0% |
| ! | GTTTTGTAGGAGGGGTTCCC+TGG | + | chr8.3:16632017-16632036 | MS.gene033202:CDS | 55.0% |
| !! | AGGGTTCTTGGTGTTAGCGG+CGG | - | chr8.3:16631117-16631136 | None:intergenic | 55.0% |
| !! | GCCAGGGTTCTTGGTGTTAG+CGG | - | chr8.3:16631120-16631139 | None:intergenic | 55.0% |
| !! | TTCTTGGTGTTAGCGGCGGA+AGG | - | chr8.3:16631113-16631132 | None:intergenic | 55.0% |
| AGCGGCGGAAGGAATCGGAA+CGG | - | chr8.3:16631102-16631121 | None:intergenic | 60.0% | |
| ATGCTCGTTGTCCTGGGTGC+AGG | + | chr8.3:16632170-16632189 | MS.gene033202:CDS | 60.0% | |
| CGGAACGGCGGCGATTGAAT+CGG | - | chr8.3:16631087-16631106 | None:intergenic | 60.0% | |
| CGTTCCACCACTCCCTGGTT+TGG | - | chr8.3:16631894-16631913 | None:intergenic | 60.0% | |
| GAGCAGGATGCTCGTTGTCC+TGG | + | chr8.3:16632163-16632182 | MS.gene033202:CDS | 60.0% | |
| GCCGCTAACACCAAGAACCC+TGG | + | chr8.3:16631116-16631135 | MS.gene033202:CDS | 60.0% | |
| GGCACAGACATGCGAGACCA+GGG | - | chr8.3:16632037-16632056 | None:intergenic | 60.0% | |
| TGGCACAGACATGCGAGACC+AGG | - | chr8.3:16632038-16632057 | None:intergenic | 60.0% | |
| TGTTTCCCCACTGGCGACGA+CGG | - | chr8.3:16631446-16631465 | None:intergenic | 60.0% | |
| ! | GAGTGGTGGAACGGTTCCTC+GGG | + | chr8.3:16631901-16631920 | MS.gene033202:CDS | 60.0% |
| ! | GGAGTGGTGGAACGGTTCCT+CGG | + | chr8.3:16631900-16631919 | MS.gene033202:CDS | 60.0% |
| AAAGTGGGGGCGAGGCGTAG+AGG | + | chr8.3:16631485-16631504 | MS.gene033202:CDS | 65.0% | |
| ATGTGCCGTCGTCGCCAGTG+GGG | + | chr8.3:16631438-16631457 | MS.gene033202:CDS | 65.0% | |
| CATGTGCCGTCGTCGCCAGT+GGG | + | chr8.3:16631437-16631456 | MS.gene033202:CDS | 65.0% | |
| GGAACCGTTCCACCACTCCC+TGG | - | chr8.3:16631899-16631918 | None:intergenic | 65.0% | |
| GGCGGAAGGAATCGGAACGG+CGG | - | chr8.3:16631099-16631118 | None:intergenic | 65.0% | |
| CCACTGGCGACGACGGCACA+TGG | - | chr8.3:16631439-16631458 | None:intergenic | 70.0% | |
| CCATGTGCCGTCGTCGCCAG+TGG | + | chr8.3:16631436-16631455 | MS.gene033202:CDS | 70.0% | |
| GGCGAGGCGTAGAGGTGGAG+AGG | + | chr8.3:16631493-16631512 | MS.gene033202:CDS | 70.0% | |
| GTGGGGGCGAGGCGTAGAGG+TGG | + | chr8.3:16631488-16631507 | MS.gene033202:CDS | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8.3 | gene | 16631077 | 16632294 | 16631077 | ID=MS.gene033202 |
| chr8.3 | mRNA | 16631077 | 16632294 | 16631077 | ID=MS.gene033202.t1;Parent=MS.gene033202 |
| chr8.3 | exon | 16631077 | 16631151 | 16631077 | ID=MS.gene033202.t1.exon1;Parent=MS.gene033202.t1 |
| chr8.3 | CDS | 16631077 | 16631151 | 16631077 | ID=cds.MS.gene033202.t1;Parent=MS.gene033202.t1 |
| chr8.3 | exon | 16631246 | 16631312 | 16631246 | ID=MS.gene033202.t1.exon2;Parent=MS.gene033202.t1 |
| chr8.3 | CDS | 16631246 | 16631312 | 16631246 | ID=cds.MS.gene033202.t1;Parent=MS.gene033202.t1 |
| chr8.3 | exon | 16631390 | 16632294 | 16631390 | ID=MS.gene033202.t1.exon3;Parent=MS.gene033202.t1 |
| chr8.3 | CDS | 16631390 | 16632294 | 16631390 | ID=cds.MS.gene033202.t1;Parent=MS.gene033202.t1 |
| Gene Sequence |
| Protein sequence |
