AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene60326

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene60326.t1 MTR_4g107090 94.737 247 13 0 1 247 1 247 1.31e-124 358
MS.gene60326.t1 MTR_6g008950 43.910 312 122 12 22 319 14 286 3.78e-57 188
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene60326.t1 AT5G62910 44.134 358 153 10 1 345 1 324 1.16e-68 218
MS.gene60326.t1 AT5G62910 44.134 358 153 10 1 345 1 324 1.16e-68 218
MS.gene60326.t1 AT3G48070 46.328 354 149 11 1 348 1 319 4.91e-65 209
MS.gene60326.t1 AT3G48070 45.739 352 152 10 1 347 1 318 6.44e-64 207
MS.gene60326.t1 AT3G48070 47.656 256 101 8 96 347 43 269 1.22e-43 152
MS.gene60326.t1 AT1G74870 30.492 305 138 7 22 319 21 258 7.76e-27 107
MS.gene60326.t1 AT2G28540 42.105 57 27 1 273 323 9 65 9.68e-11 63.5
MS.gene60326.t1 AT2G28540 42.105 57 27 1 273 323 9 65 9.70e-11 63.5

Find 110 sgRNAs with CRISPR-Local

Find 132 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CCTCCAAGCTTTGCCATTAC+TGG 0.202687 8.2:-18903658 None:intergenic
GTGACTGATGGTTTGAATTT+AGG 0.215191 8.2:+18903588 MS.gene60326:CDS
AGTAGTGGTGGGTGTTTCTC+TGG 0.244371 8.2:+18903393 MS.gene60326:CDS
CTTCAATTTCGCGGACCTAT+TGG 0.323866 8.2:-18902978 None:intergenic
GAGCAGGATGCTCGTTGTCC+TGG 0.324362 8.2:+18903894 MS.gene60326:CDS
TCAAGATCCTCACAGCAAAT+TGG 0.334616 8.2:-18903798 None:intergenic
GTGTTGTGTGGCAATGATTC+CGG 0.338325 8.2:+18903318 MS.gene60326:CDS
CCACACAACACACTACTATT+AGG 0.338725 8.2:-18903306 None:intergenic
CGTTCCACCACTCCCTGGTT+TGG 0.368101 8.2:-18903622 None:intergenic
CTGTGAGGATCTTGATTTAA+CGG 0.370410 8.2:+18903806 MS.gene60326:CDS
TGGTTTGAATTTAGGATGTT+TGG 0.374976 8.2:+18903596 MS.gene60326:CDS
GATGAATCCGTTTCTGCAAC+GGG 0.375384 8.2:-18903558 None:intergenic
ACTCCGAATCACTGTCTTGA+TGG 0.383993 8.2:-18903260 None:intergenic
AAGAAGAAGGGTTGCAAGGA+TGG 0.391810 8.2:+18903129 MS.gene60326:CDS
CTCACAGCAAATTGGACAAT+TGG 0.402448 8.2:-18903790 None:intergenic
CCACAAGAGGATTCTTGAGC+AGG 0.406130 8.2:+18903878 MS.gene60326:CDS
ATGATGGATGCTTGGATGAT+TGG 0.408221 8.2:+18903475 MS.gene60326:CDS
CGTTTGCTCTGTTTCCCCAC+TGG 0.408315 8.2:-18903183 None:intergenic
GAAACAGAGCAAACGTGAAT+TGG 0.411752 8.2:+18903191 MS.gene60326:CDS
TGATGGATGCTTGGATGATT+GGG 0.423751 8.2:+18903476 MS.gene60326:CDS
ACACTACTATTAGGACTGAT+AGG 0.429535 8.2:-18903297 None:intergenic
GCATACTATGCTGTTTCGAC+AGG 0.434123 8.2:-18903716 None:intergenic
GAATGAACCCGTTGCAGAAA+CGG 0.447105 8.2:+18903551 MS.gene60326:CDS
GAGTGGTGGAACGGTTCCTC+GGG 0.449106 8.2:+18903632 MS.gene60326:CDS
TGTTGTGTGGCAATGATTCC+GGG 0.450115 8.2:+18903319 MS.gene60326:CDS
GTGTTAGCGGCGGAAGGAAT+CGG 0.452634 8.2:-18902835 None:intergenic
CCTCCTACAAAACGTGGATT+CGG 0.456274 8.2:-18903738 None:intergenic
GGAGTGGTGGAACGGTTCCT+CGG 0.457706 8.2:+18903631 MS.gene60326:CDS
AGCAGGATGCTCGTTGTCCT+GGG 0.459006 8.2:+18903895 MS.gene60326:CDS
GCCAGGGTTCTTGGTGTTAG+CGG 0.468562 8.2:-18902848 None:intergenic
GAAGGGTTGCAAGGATGGAT+TGG 0.469248 8.2:+18903134 MS.gene60326:CDS
AGTAGTAGTTCTAGTAGTGG+TGG 0.477973 8.2:+18903381 MS.gene60326:CDS
CATGTGCCGTCGTCGCCAGT+GGG 0.478008 8.2:+18903168 MS.gene60326:CDS
CTATGCTGTTTCGACAGGTT+GGG 0.479061 8.2:-18903711 None:intergenic
TTCAGGTGCGGTGAAGAAGA+AGG 0.484533 8.2:+18903116 MS.gene60326:intron
ATGCTCGTTGTCCTGGGTGC+AGG 0.487799 8.2:+18903901 MS.gene60326:CDS
GGATGTTTGGATTCCAAACC+AGG 0.490028 8.2:+18903609 MS.gene60326:CDS
CTTATACTGCTTCAATTTCG+CGG 0.494651 8.2:-18902987 None:intergenic
CCAGTAATGGCAAAGCTTGG+AGG 0.496535 8.2:+18903658 MS.gene60326:CDS
CAAACGTGAATTGGAGAAAG+TGG 0.497957 8.2:+18903200 MS.gene60326:CDS
TGGCACAGACATGCGAGACC+AGG 0.500008 8.2:-18903766 None:intergenic
ATGGAGGTAGCCTTACTCTT+CGG 0.500698 8.2:+18903967 MS.gene60326:CDS
GGAGGATGATGATGGATGCT+TGG 0.501682 8.2:+18903467 MS.gene60326:CDS
GTAGTGGTGGGTGTTTCTCT+GGG 0.502450 8.2:+18903394 MS.gene60326:CDS
CCACTGGCGACGACGGCACA+TGG 0.507430 8.2:-18903167 None:intergenic
CGGAACGGCGGCGATTGAAT+CGG 0.509579 8.2:-18902815 None:intergenic
CCATGTGCCGTCGTCGCCAG+TGG 0.516220 8.2:+18903167 MS.gene60326:CDS
ACTATGCTGTTTCGACAGGT+TGG 0.517407 8.2:-18903712 None:intergenic
AGAAGTAGAACACGAGGAGG+AGG 0.521090 8.2:+18903449 MS.gene60326:CDS
CTTGGATGATTGGGAGGCTG+TGG 0.524760 8.2:+18903485 MS.gene60326:CDS
AGATGAATCCGTTTCTGCAA+CGG 0.528437 8.2:-18903559 None:intergenic
CTCTGGGAATATTACAGAAG+AGG 0.529198 8.2:+18903410 MS.gene60326:CDS
CACGAGGAGGAGGATGATGA+TGG 0.529916 8.2:+18903459 MS.gene60326:CDS
CATCCAGTAATGGCAAAGCT+TGG 0.537321 8.2:+18903655 MS.gene60326:CDS
AACGAGCCAACCGAAGAGTA+AGG 0.540467 8.2:-18903977 None:intergenic
GACAGGTTGGGTAAAGTCTG+AGG 0.544161 8.2:-18903699 None:intergenic
GATCCATCAAGACAGTGATT+CGG 0.544172 8.2:+18903257 MS.gene60326:CDS
TTCTTGGTGTTAGCGGCGGA+AGG 0.545412 8.2:-18902841 None:intergenic
CAGTAATGGCAAAGCTTGGA+GGG 0.550530 8.2:+18903659 MS.gene60326:CDS
TTGATGCGCGTCGTGAACAA+TGG 0.554675 8.2:+18903011 MS.gene60326:CDS
TTGGATTCCAAACCAGGGAG+TGG 0.557492 8.2:+18903615 MS.gene60326:CDS
TCAGGTGCGGTGAAGAAGAA+GGG 0.558988 8.2:+18903117 MS.gene60326:intron
GGAACCGTTCCACCACTCCC+TGG 0.559516 8.2:-18903627 None:intergenic
GGCGAGGCGTAGAGGTGGAG+AGG 0.561849 8.2:+18903224 MS.gene60326:CDS
ACTACCAGTGAAATTCGTCC+CGG 0.566478 8.2:-18903337 None:intergenic
TCATCTTGTGAAGTGACTGA+TGG 0.567881 8.2:+18903576 MS.gene60326:CDS
GATTCCGGGACGAATTTCAC+TGG 0.570168 8.2:+18903333 MS.gene60326:CDS
GTTCCTCGGGCATCCAGTAA+TGG 0.570292 8.2:+18903645 MS.gene60326:CDS
GGCTCTATGCTTCTCATCGG+CGG 0.570378 8.2:-18903520 None:intergenic
GATTCCAAACCAGGGAGTGG+TGG 0.572211 8.2:+18903618 MS.gene60326:CDS
ACACTTGCTTCTGTCTCGAT+AGG 0.572811 8.2:-18903942 None:intergenic
TTCACTGGTAGTAGCAGTGG+TGG 0.572834 8.2:+18903348 MS.gene60326:CDS
GTAGTAGTTCTAGTAGTGGT+GGG 0.574175 8.2:+18903382 MS.gene60326:CDS
AGGTAGCCTTACTCTTCGGT+TGG 0.577834 8.2:+18903971 MS.gene60326:CDS
AAACGTGAATTGGAGAAAGT+GGG 0.580491 8.2:+18903201 MS.gene60326:CDS
GCCGCTAACACCAAGAACCC+TGG 0.580532 8.2:+18902847 MS.gene60326:CDS
AGGGTTCTTGGTGTTAGCGG+CGG 0.581566 8.2:-18902845 None:intergenic
CAGCAAATTGGACAATTGGA+TGG 0.582722 8.2:-18903786 None:intergenic
GAGACAGAAGCAAGTGTGCA+TGG 0.583579 8.2:+18903948 MS.gene60326:CDS
GGACTGATAGGACTGTTTGA+CGG 0.584911 8.2:-18903285 None:intergenic
AACGGGTTCATTCTGTGAAG+AGG 0.588593 8.2:-18903541 None:intergenic
AGCAGTAGTAGTTCTAGTAG+TGG 0.604603 8.2:+18903378 MS.gene60326:CDS
CGTGAACAATGGCTATCTCA+AGG 0.607296 8.2:+18903022 MS.gene60326:CDS
GGCGATTGAATCGGAAACCA+TGG 0.614198 8.2:-18902806 None:intergenic
CCTGCTCAAGAATCCTCTTG+TGG 0.614452 8.2:-18903878 None:intergenic
TGTTTCCCCACTGGCGACGA+CGG 0.617264 8.2:-18903174 None:intergenic
AGAGGCTCTATGCTTCTCAT+CGG 0.622264 8.2:-18903523 None:intergenic
GGCACAGACATGCGAGACCA+GGG 0.623059 8.2:-18903765 None:intergenic
AGCCGAAAACCACAATTGCA+CGG 0.626352 8.2:-18903843 None:intergenic
ACAGGTTGGGTAAAGTCTGA+GGG 0.629189 8.2:-18903698 None:intergenic
AACGTGAATTGGAGAAAGTG+GGG 0.634840 8.2:+18903202 MS.gene60326:CDS
CAAACCAGGGAGTGGTGGAA+CGG 0.635703 8.2:+18903623 MS.gene60326:CDS
TCATATTGCTTCCTGCACCC+AGG 0.637371 8.2:-18903912 None:intergenic
AATTTCACTGGTAGTAGCAG+TGG 0.639931 8.2:+18903345 MS.gene60326:CDS
TGAAGAAGAAGTAGAACACG+AGG 0.644168 8.2:+18903443 MS.gene60326:CDS
CAATTGTCCAATTTGCTGTG+AGG 0.649475 8.2:+18903791 MS.gene60326:CDS
GGTGAAGAAGAAGGGTTGCA+AGG 0.653357 8.2:+18903125 MS.gene60326:CDS
ATGTGCCGTCGTCGCCAGTG+GGG 0.653421 8.2:+18903169 MS.gene60326:CDS
GGCGGAAGGAATCGGAACGG+CGG 0.658597 8.2:-18902827 None:intergenic
GTTCTGTTAGCATGATCGAA+AGG 0.664821 8.2:+18903997 MS.gene60326:CDS
GGAACCCCTCCTACAAAACG+TGG 0.666447 8.2:-18903744 None:intergenic
AGAAGAAGTAGAACACGAGG+AGG 0.669536 8.2:+18903446 MS.gene60326:CDS
TGGATGCTTGGATGATTGGG+AGG 0.674598 8.2:+18903479 MS.gene60326:CDS
TTGCCATTACTGGATGCCCG+AGG 0.677388 8.2:-18903648 None:intergenic
GATGTTTGGATTCCAAACCA+GGG 0.680935 8.2:+18903610 MS.gene60326:CDS
AGCGGCGGAAGGAATCGGAA+CGG 0.682697 8.2:-18902830 None:intergenic
ACGTGAATTGGAGAAAGTGG+GGG 0.693905 8.2:+18903203 MS.gene60326:CDS
GGTTGGGTAAAGTCTGAGGG+CGG 0.713101 8.2:-18903695 None:intergenic
ACAGAAGCAAGTGTGCATGG+AGG 0.724066 8.2:+18903951 MS.gene60326:CDS
CCTAATAGTAGTGTGTTGTG+TGG 0.739406 8.2:+18903306 MS.gene60326:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! GAAAATTATATAATCGAAAT+TGG - chr8.2:18902901-18902920 None:intergenic 15.0%
!!! TAATTTTGTTATCTTTGTTA+TGG + chr8.2:18903091-18903110 MS.gene60326:intron 15.0%
!!! CGATTTTTGTTTTGATCTAA+TGG + chr8.2:18903063-18903082 MS.gene60326:intron 25.0%
!!! TTATCTTTGTTATGGTTTTC+AGG + chr8.2:18903099-18903118 MS.gene60326:intron 25.0%
! AATTCGATTTTCAGACCAAT+AGG + chr8.2:18902963-18902982 MS.gene60326:intron 30.0%
! TGGTTTGAATTTAGGATGTT+TGG + chr8.2:18903596-18903615 MS.gene60326:CDS 30.0%
AAACGTGAATTGGAGAAAGT+GGG + chr8.2:18903201-18903220 MS.gene60326:CDS 35.0%
ACACTACTATTAGGACTGAT+AGG - chr8.2:18903300-18903319 None:intergenic 35.0%
CTGTGAGGATCTTGATTTAA+CGG + chr8.2:18903806-18903825 MS.gene60326:CDS 35.0%
CTTATACTGCTTCAATTTCG+CGG - chr8.2:18902990-18903009 None:intergenic 35.0%
GTGACTGATGGTTTGAATTT+AGG + chr8.2:18903588-18903607 MS.gene60326:CDS 35.0%
!!! TTTGTTATGGTTTTCAGGTG+CGG + chr8.2:18903104-18903123 MS.gene60326:intron 35.0%
AACGTGAATTGGAGAAAGTG+GGG + chr8.2:18903202-18903221 MS.gene60326:CDS 40.0%
AATTTCACTGGTAGTAGCAG+TGG + chr8.2:18903345-18903364 MS.gene60326:CDS 40.0%
AGATGAATCCGTTTCTGCAA+CGG - chr8.2:18903562-18903581 None:intergenic 40.0%
CAAACGTGAATTGGAGAAAG+TGG + chr8.2:18903200-18903219 MS.gene60326:CDS 40.0%
CAGCAAATTGGACAATTGGA+TGG - chr8.2:18903789-18903808 None:intergenic 40.0%
CCACACAACACACTACTATT+AGG - chr8.2:18903309-18903328 None:intergenic 40.0%
CCTAATAGTAGTGTGTTGTG+TGG + chr8.2:18903306-18903325 MS.gene60326:CDS 40.0%
CTCACAGCAAATTGGACAAT+TGG - chr8.2:18903793-18903812 None:intergenic 40.0%
GAAACAGAGCAAACGTGAAT+TGG + chr8.2:18903191-18903210 MS.gene60326:CDS 40.0%
GATCCATCAAGACAGTGATT+CGG + chr8.2:18903257-18903276 MS.gene60326:CDS 40.0%
GATGTTTGGATTCCAAACCA+GGG + chr8.2:18903610-18903629 MS.gene60326:CDS 40.0%
GTTCTGTTAGCATGATCGAA+AGG + chr8.2:18903997-18904016 MS.gene60326:CDS 40.0%
TCAAGATCCTCACAGCAAAT+TGG - chr8.2:18903801-18903820 None:intergenic 40.0%
TCATCTTGTGAAGTGACTGA+TGG + chr8.2:18903576-18903595 MS.gene60326:CDS 40.0%
TGAAGAAGAAGTAGAACACG+AGG + chr8.2:18903443-18903462 MS.gene60326:CDS 40.0%
! AGTTTTCTTCCGTGCAATTG+TGG + chr8.2:18903834-18903853 MS.gene60326:CDS 40.0%
! CTCTGGGAATATTACAGAAG+AGG + chr8.2:18903410-18903429 MS.gene60326:CDS 40.0%
! TGATGGATGCTTGGATGATT+GGG + chr8.2:18903476-18903495 MS.gene60326:CDS 40.0%
! TTACCCTCTTCTTTTTGCCA+GGG - chr8.2:18902867-18902886 None:intergenic 40.0%
! TTCCGTGCAATTGTGGTTTT+CGG + chr8.2:18903841-18903860 MS.gene60326:CDS 40.0%
! TTTGTCTCTTTTGCCACAAG+AGG + chr8.2:18903865-18903884 MS.gene60326:CDS 40.0%
!! AGCAGTAGTAGTTCTAGTAG+TGG + chr8.2:18903378-18903397 MS.gene60326:CDS 40.0%
!! AGTAGTAGTTCTAGTAGTGG+TGG + chr8.2:18903381-18903400 MS.gene60326:CDS 40.0%
!! ATGATGGATGCTTGGATGAT+TGG + chr8.2:18903475-18903494 MS.gene60326:CDS 40.0%
!! CAATTGTCCAATTTGCTGTG+AGG + chr8.2:18903791-18903810 MS.gene60326:CDS 40.0%
!! GTAGTAGTTCTAGTAGTGGT+GGG + chr8.2:18903382-18903401 MS.gene60326:CDS 40.0%
AAGAAGAAGGGTTGCAAGGA+TGG + chr8.2:18903129-18903148 MS.gene60326:CDS 45.0%
ACACTTGCTTCTGTCTCGAT+AGG - chr8.2:18903945-18903964 None:intergenic 45.0%
ACGTGAATTGGAGAAAGTGG+GGG + chr8.2:18903203-18903222 MS.gene60326:CDS 45.0%
ACTACCAGTGAAATTCGTCC+CGG - chr8.2:18903340-18903359 None:intergenic 45.0%
ACTCCGAATCACTGTCTTGA+TGG - chr8.2:18903263-18903282 None:intergenic 45.0%
AGAACCCTGGCAAAAAGAAG+AGG + chr8.2:18902860-18902879 MS.gene60326:CDS 45.0%
AGAAGAAGTAGAACACGAGG+AGG + chr8.2:18903446-18903465 MS.gene60326:CDS 45.0%
AGAGGCTCTATGCTTCTCAT+CGG - chr8.2:18903526-18903545 None:intergenic 45.0%
AGCCGAAAACCACAATTGCA+CGG - chr8.2:18903846-18903865 None:intergenic 45.0%
CAGTAATGGCAAAGCTTGGA+GGG + chr8.2:18903659-18903678 MS.gene60326:CDS 45.0%
CATCCAGTAATGGCAAAGCT+TGG + chr8.2:18903655-18903674 MS.gene60326:CDS 45.0%
CCTCCTACAAAACGTGGATT+CGG - chr8.2:18903741-18903760 None:intergenic 45.0%
CGTGAACAATGGCTATCTCA+AGG + chr8.2:18903022-18903041 MS.gene60326:CDS 45.0%
CTGGCAAAAAGAAGAGGGTA+AGG + chr8.2:18902866-18902885 MS.gene60326:intron 45.0%
CTTCAATTTCGCGGACCTAT+TGG - chr8.2:18902981-18903000 None:intergenic 45.0%
GAACCCTGGCAAAAAGAAGA+GGG + chr8.2:18902861-18902880 MS.gene60326:CDS 45.0%
GAATGAACCCGTTGCAGAAA+CGG + chr8.2:18903551-18903570 MS.gene60326:CDS 45.0%
GATGAATCCGTTTCTGCAAC+GGG - chr8.2:18903561-18903580 None:intergenic 45.0%
GGACTGATAGGACTGTTTGA+CGG - chr8.2:18903288-18903307 None:intergenic 45.0%
GGATGTTTGGATTCCAAACC+AGG + chr8.2:18903609-18903628 MS.gene60326:CDS 45.0%
GTGTTGTGTGGCAATGATTC+CGG + chr8.2:18903318-18903337 MS.gene60326:CDS 45.0%
TGTTGTGTGGCAATGATTCC+GGG + chr8.2:18903319-18903338 MS.gene60326:CDS 45.0%
! AACGGGTTCATTCTGTGAAG+AGG - chr8.2:18903544-18903563 None:intergenic 45.0%
! ACAGGTTGGGTAAAGTCTGA+GGG - chr8.2:18903701-18903720 None:intergenic 45.0%
! ATGCCGAATCCACGTTTTGT+AGG + chr8.2:18903735-18903754 MS.gene60326:CDS 45.0%
! ATGGAGGTAGCCTTACTCTT+CGG + chr8.2:18903967-18903986 MS.gene60326:CDS 45.0%
! CGAATCCACGTTTTGTAGGA+GGG + chr8.2:18903739-18903758 MS.gene60326:CDS 45.0%
! CTTACCCTCTTCTTTTTGCC+AGG - chr8.2:18902868-18902887 None:intergenic 45.0%
! CTTCTTTTTGCCAGGGTTCT+TGG - chr8.2:18902860-18902879 None:intergenic 45.0%
! GAATCCACGTTTTGTAGGAG+GGG + chr8.2:18903740-18903759 MS.gene60326:CDS 45.0%
!! ACTATGCTGTTTCGACAGGT+TGG - chr8.2:18903715-18903734 None:intergenic 45.0%
!! CTATGCTGTTTCGACAGGTT+GGG - chr8.2:18903714-18903733 None:intergenic 45.0%
!! GCATACTATGCTGTTTCGAC+AGG - chr8.2:18903719-18903738 None:intergenic 45.0%
AACGAGCCAACCGAAGAGTA+AGG - chr8.2:18903980-18903999 None:intergenic 50.0%
ACAGAAGCAAGTGTGCATGG+AGG + chr8.2:18903951-18903970 MS.gene60326:CDS 50.0%
AGAAGTAGAACACGAGGAGG+AGG + chr8.2:18903449-18903468 MS.gene60326:CDS 50.0%
CCACAAGAGGATTCTTGAGC+AGG + chr8.2:18903878-18903897 MS.gene60326:CDS 50.0%
CCAGTAATGGCAAAGCTTGG+AGG + chr8.2:18903658-18903677 MS.gene60326:CDS 50.0%
CCTCCAAGCTTTGCCATTAC+TGG - chr8.2:18903661-18903680 None:intergenic 50.0%
CCTGCTCAAGAATCCTCTTG+TGG - chr8.2:18903881-18903900 None:intergenic 50.0%
GAAGGGTTGCAAGGATGGAT+TGG + chr8.2:18903134-18903153 MS.gene60326:CDS 50.0%
GAGACAGAAGCAAGTGTGCA+TGG + chr8.2:18903948-18903967 MS.gene60326:CDS 50.0%
GATTCCGGGACGAATTTCAC+TGG + chr8.2:18903333-18903352 MS.gene60326:CDS 50.0%
GGTGAAGAAGAAGGGTTGCA+AGG + chr8.2:18903125-18903144 MS.gene60326:CDS 50.0%
TCAGGTGCGGTGAAGAAGAA+GGG + chr8.2:18903117-18903136 MS.gene60326:intron 50.0%
TCATATTGCTTCCTGCACCC+AGG - chr8.2:18903915-18903934 None:intergenic 50.0%
TGGATGCTTGGATGATTGGG+AGG + chr8.2:18903479-18903498 MS.gene60326:CDS 50.0%
TTCACTGGTAGTAGCAGTGG+TGG + chr8.2:18903348-18903367 MS.gene60326:CDS 50.0%
TTCAGGTGCGGTGAAGAAGA+AGG + chr8.2:18903116-18903135 MS.gene60326:intron 50.0%
TTGATGCGCGTCGTGAACAA+TGG + chr8.2:18903011-18903030 MS.gene60326:CDS 50.0%
TTGGATTCCAAACCAGGGAG+TGG + chr8.2:18903615-18903634 MS.gene60326:CDS 50.0%
! AGGTAGCCTTACTCTTCGGT+TGG + chr8.2:18903971-18903990 MS.gene60326:CDS 50.0%
! CCGAATCCACGTTTTGTAGG+AGG + chr8.2:18903738-18903757 MS.gene60326:CDS 50.0%
! GACAGGTTGGGTAAAGTCTG+AGG - chr8.2:18903702-18903721 None:intergenic 50.0%
!! AGTAGTGGTGGGTGTTTCTC+TGG + chr8.2:18903393-18903412 MS.gene60326:CDS 50.0%
!! GGAGGATGATGATGGATGCT+TGG + chr8.2:18903467-18903486 MS.gene60326:CDS 50.0%
!! GTAGTGGTGGGTGTTTCTCT+GGG + chr8.2:18903394-18903413 MS.gene60326:CDS 50.0%
AATTGGAGAAAGTGGGGGCG+AGG + chr8.2:18903208-18903227 MS.gene60326:CDS 55.0%
AGCAGGATGCTCGTTGTCCT+GGG + chr8.2:18903895-18903914 MS.gene60326:CDS 55.0%
CACGAGGAGGAGGATGATGA+TGG + chr8.2:18903459-18903478 MS.gene60326:CDS 55.0%
CGTTTGCTCTGTTTCCCCAC+TGG - chr8.2:18903186-18903205 None:intergenic 55.0%
CTTGGATGATTGGGAGGCTG+TGG + chr8.2:18903485-18903504 MS.gene60326:CDS 55.0%
GATTCCAAACCAGGGAGTGG+TGG + chr8.2:18903618-18903637 MS.gene60326:CDS 55.0%
GGAACCCCTCCTACAAAACG+TGG - chr8.2:18903747-18903766 None:intergenic 55.0%
GGCTCTATGCTTCTCATCGG+CGG - chr8.2:18903523-18903542 None:intergenic 55.0%
GGTTGGGTAAAGTCTGAGGG+CGG - chr8.2:18903698-18903717 None:intergenic 55.0%
GTGTTAGCGGCGGAAGGAAT+CGG - chr8.2:18902838-18902857 None:intergenic 55.0%
GTTCCTCGGGCATCCAGTAA+TGG + chr8.2:18903645-18903664 MS.gene60326:CDS 55.0%
TTGCCATTACTGGATGCCCG+AGG - chr8.2:18903651-18903670 None:intergenic 55.0%
! CAAACCAGGGAGTGGTGGAA+CGG + chr8.2:18903623-18903642 MS.gene60326:CDS 55.0%
! GTTTTGTAGGAGGGGTTCCC+TGG + chr8.2:18903748-18903767 MS.gene60326:CDS 55.0%
!! AGGGTTCTTGGTGTTAGCGG+CGG - chr8.2:18902848-18902867 None:intergenic 55.0%
!! GCCAGGGTTCTTGGTGTTAG+CGG - chr8.2:18902851-18902870 None:intergenic 55.0%
!! TTCTTGGTGTTAGCGGCGGA+AGG - chr8.2:18902844-18902863 None:intergenic 55.0%
AGCGGCGGAAGGAATCGGAA+CGG - chr8.2:18902833-18902852 None:intergenic 60.0%
ATGCTCGTTGTCCTGGGTGC+AGG + chr8.2:18903901-18903920 MS.gene60326:CDS 60.0%
CGGAACGGCGGCGATTGAAT+CGG - chr8.2:18902818-18902837 None:intergenic 60.0%
CGTTCCACCACTCCCTGGTT+TGG - chr8.2:18903625-18903644 None:intergenic 60.0%
GAGCAGGATGCTCGTTGTCC+TGG + chr8.2:18903894-18903913 MS.gene60326:CDS 60.0%
GCCGCTAACACCAAGAACCC+TGG + chr8.2:18902847-18902866 MS.gene60326:CDS 60.0%
GGCACAGACATGCGAGACCA+GGG - chr8.2:18903768-18903787 None:intergenic 60.0%
TGGCACAGACATGCGAGACC+AGG - chr8.2:18903769-18903788 None:intergenic 60.0%
TGTTTCCCCACTGGCGACGA+CGG - chr8.2:18903177-18903196 None:intergenic 60.0%
! GAGTGGTGGAACGGTTCCTC+GGG + chr8.2:18903632-18903651 MS.gene60326:CDS 60.0%
! GGAGTGGTGGAACGGTTCCT+CGG + chr8.2:18903631-18903650 MS.gene60326:CDS 60.0%
AAAGTGGGGGCGAGGCGTAG+AGG + chr8.2:18903216-18903235 MS.gene60326:CDS 65.0%
ATGTGCCGTCGTCGCCAGTG+GGG + chr8.2:18903169-18903188 MS.gene60326:CDS 65.0%
CATGTGCCGTCGTCGCCAGT+GGG + chr8.2:18903168-18903187 MS.gene60326:CDS 65.0%
GGAACCGTTCCACCACTCCC+TGG - chr8.2:18903630-18903649 None:intergenic 65.0%
GGCGGAAGGAATCGGAACGG+CGG - chr8.2:18902830-18902849 None:intergenic 65.0%
CCACTGGCGACGACGGCACA+TGG - chr8.2:18903170-18903189 None:intergenic 70.0%
CCATGTGCCGTCGTCGCCAG+TGG + chr8.2:18903167-18903186 MS.gene60326:CDS 70.0%
GGCGAGGCGTAGAGGTGGAG+AGG + chr8.2:18903224-18903243 MS.gene60326:CDS 70.0%
GTGGGGGCGAGGCGTAGAGG+TGG + chr8.2:18903219-18903238 MS.gene60326:CDS 75.0%


Chromosome Type Strat End Strand Name
chr8.2 gene 18902808 18904025 18902808 ID=MS.gene60326
chr8.2 mRNA 18902808 18904025 18902808 ID=MS.gene60326.t1;Parent=MS.gene60326
chr8.2 exon 18902808 18902882 18902808 ID=MS.gene60326.t1.exon1;Parent=MS.gene60326.t1
chr8.2 CDS 18902808 18902882 18902808 ID=cds.MS.gene60326.t1;Parent=MS.gene60326.t1
chr8.2 exon 18902977 18903043 18902977 ID=MS.gene60326.t1.exon2;Parent=MS.gene60326.t1
chr8.2 CDS 18902977 18903043 18902977 ID=cds.MS.gene60326.t1;Parent=MS.gene60326.t1
chr8.2 exon 18903121 18904025 18903121 ID=MS.gene60326.t1.exon3;Parent=MS.gene60326.t1
chr8.2 CDS 18903121 18904025 18903121 ID=cds.MS.gene60326.t1;Parent=MS.gene60326.t1
Gene Sequence

>MS.gene60326

ATGGTTTCCGATTCAATCGCCGCCGTTCCGATTCCTTCCGCCGCTAACACCAAGAACCCTGGCAAAAAGAAGAGGGTAAGGATTTTCATTCCAATTTCGATTATATAATTTTCGTTCGTTATTCTTATTGAAACTCACGCAGTTACGTGTTATCGAATTCGATTTTCAGACCAATAGGTCCGCGAAATTGAAGCAGTATAAGATTGATGCGCGTCGTGAACAATGGCTATCTCAAGGTATGTGTGATGTTAACATCGATTTTTGTTTTGATCTAATGGTTTCTTAATTTTGTTATCTTTGTTATGGTTTTCAGGTGCGGTGAAGAAGAAGGGTTGCAAGGATGGATTGGACGATGATGTCCATGTGCCGTCGTCGCCAGTGGGGAAACAGAGCAAACGTGAATTGGAGAAAGTGGGGGCGAGGCGTAGAGGTGGAGAGGATGATGTGTTGATCCATCAAGACAGTGATTCGGAGTCACCGTCAAACAGTCCTATCAGTCCTAATAGTAGTGTGTTGTGTGGCAATGATTCCGGGACGAATTTCACTGGTAGTAGCAGTGGTGGAAGCAGTAGCAGTAGTAGTTCTAGTAGTGGTGGGTGTTTCTCTGGGAATATTACAGAAGAGGAAGAAGATGATGAAGAAGAAGTAGAACACGAGGAGGAGGATGATGATGGATGCTTGGATGATTGGGAGGCTGTGGCAGATGCTTTAGCCGCCGATGAGAAGCATAGAGCCTCTTCACAGAATGAACCCGTTGCAGAAACGGATTCATCTTGTGAAGTGACTGATGGTTTGAATTTAGGATGTTTGGATTCCAAACCAGGGAGTGGTGGAACGGTTCCTCGGGCATCCAGTAATGGCAAAGCTTGGAGGGCTGATGATGCTTTCCGCCCTCAGACTTTACCCAACCTGTCGAAACAGCATAGTATGCCGAATCCACGTTTTGTAGGAGGGGTTCCCTGGTCTCGCATGTCTGTGCCATCCAATTGTCCAATTTGCTGTGAGGATCTTGATTTAACGGACACAAGTTTTCTTCCGTGCAATTGTGGTTTTCGGCTTTGTCTCTTTTGCCACAAGAGGATTCTTGAGCAGGATGCTCGTTGTCCTGGGTGCAGGAAGCAATATGAGTGTGAACCTATCGAGACAGAAGCAAGTGTGCATGGAGGTAGCCTTACTCTTCGGTTGGCTCGTTCTGTTAGCATGATCGAAAGGTCTTGA
Protein sequence

>MS.gene60326.t1

MVSDSIAAVPIPSAANTKNPGKKKRTNRSAKLKQYKIDARREQWLSQGAVKKKGCKDGLDDDVHVPSSPVGKQSKRELEKVGARRRGGEDDVLIHQDSDSESPSNSPISPNSSVLCGNDSGTNFTGSSSGGSSSSSSSSSGGCFSGNITEEEEDDEEEVEHEEEDDDGCLDDWEAVADALAADEKHRASSQNEPVAETDSSCEVTDGLNLGCLDSKPGSGGTVPRASSNGKAWRADDAFRPQTLPNLSKQHSMPNPRFVGGVPWSRMSVPSNCPICCEDLDLTDTSFLPCNCGFRLCLFCHKRILEQDARCPGCRKQYECEPIETEASVHGGSLTLRLARSVSMIERS