Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene56896.t1 | RHN63559.1 | 93.7 | 348 | 19 | 2 | 1 | 345 | 1 | 348 | 8.10E-155 | 556.6 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene56896.t1 | P34909 | 44.4 | 54 | 27 | 1 | 270 | 320 | 33 | 86 | 1.4e-09 | 65.5 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene56896.t1 | A0A396IDB7 | 93.7 | 348 | 19 | 2 | 1 | 345 | 1 | 348 | 5.8e-155 | 556.6 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene059920 | MS.gene56896 | 0.800156 | 1.65E-48 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene43272 | MS.gene56896 | PPI |
| MS.gene033202 | MS.gene56896 | PPI |
| MS.gene56896 | MS.gene60326 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene56896.t1 | MTR_4g107090 | 89.069 | 247 | 24 | 2 | 1 | 244 | 1 | 247 | 6.92e-115 | 333 |
| MS.gene56896.t1 | MTR_6g008950 | 42.857 | 308 | 128 | 12 | 22 | 316 | 14 | 286 | 9.59e-57 | 187 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene56896.t1 | AT5G62910 | 44.818 | 357 | 149 | 12 | 1 | 342 | 1 | 324 | 7.86e-68 | 216 |
| MS.gene56896.t1 | AT5G62910 | 44.818 | 357 | 149 | 12 | 1 | 342 | 1 | 324 | 7.86e-68 | 216 |
| MS.gene56896.t1 | AT3G48070 | 45.690 | 348 | 157 | 10 | 1 | 345 | 1 | 319 | 1.02e-62 | 202 |
| MS.gene56896.t1 | AT3G48070 | 45.533 | 347 | 157 | 10 | 1 | 344 | 1 | 318 | 8.97e-62 | 201 |
| MS.gene56896.t1 | AT3G48070 | 61.290 | 124 | 43 | 2 | 222 | 344 | 150 | 269 | 4.72e-43 | 151 |
| MS.gene56896.t1 | AT1G74870 | 30.945 | 307 | 131 | 9 | 22 | 316 | 21 | 258 | 1.15e-26 | 107 |
Find 108 sgRNAs with CRISPR-Local
Find 129 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CCTCCAAGCTTTGCCATTAT+TGG | 0.149479 | 8.1:-18069543 | None:intergenic |
| ATGACTAATTGTTTGGATTT+AGG | 0.231862 | 8.1:+18069473 | MS.gene56896:CDS |
| AGTAGTGGTGGGTGTTTCTC+TGG | 0.244371 | 8.1:+18069287 | MS.gene56896:CDS |
| CTTCAATTTCGCGGACCTAT+TGG | 0.323866 | 8.1:-18068871 | None:intergenic |
| GAGCAGGATGCTCGTTGTCC+TGG | 0.324362 | 8.1:+18069779 | MS.gene56896:CDS |
| TCAAGATCCTCACAGCAAAT+TGG | 0.334616 | 8.1:-18069683 | None:intergenic |
| CCACACAACACACTACTATT+AGG | 0.338725 | 8.1:-18069200 | None:intergenic |
| TTGTTTGGATTTAGGATGTC+TGG | 0.342987 | 8.1:+18069481 | MS.gene56896:CDS |
| GTGTTGTGTGGTAATGATTC+CGG | 0.352982 | 8.1:+18069212 | MS.gene56896:CDS |
| CGTTCCACCACTCCCTGGTT+TGG | 0.368101 | 8.1:-18069507 | None:intergenic |
| CTGTGAGGATCTTGATTTAA+CGG | 0.370410 | 8.1:+18069691 | MS.gene56896:CDS |
| ATGTGAAATGACTAATTGTT+TGG | 0.385906 | 8.1:+18069466 | MS.gene56896:CDS |
| AAGAAGAAGGGTTGCAAGGA+TGG | 0.391810 | 8.1:+18069023 | MS.gene56896:CDS |
| CTCACAGCAAATTGGACAAT+TGG | 0.402448 | 8.1:-18069675 | None:intergenic |
| CCACAAGAGGATTCTTGAGC+AGG | 0.406130 | 8.1:+18069763 | MS.gene56896:CDS |
| CCCTCCTACAAAACGTGGAT+TGG | 0.407656 | 8.1:-18069624 | None:intergenic |
| ATGATGGATGCTTGGATGAT+TGG | 0.408221 | 8.1:+18069363 | MS.gene56896:CDS |
| GTTCCTCGGACTTCCAATAA+TGG | 0.418163 | 8.1:+18069530 | MS.gene56896:CDS |
| ACTATGCTGCTTCGACAGAT+TGG | 0.419326 | 8.1:-18069597 | None:intergenic |
| GAAGGGTTGCAAGGATGGAT+TGG | 0.423739 | 8.1:+18069028 | MS.gene56896:CDS |
| TGATGGATGCTTGGATGATT+GGG | 0.423751 | 8.1:+18069364 | MS.gene56896:CDS |
| CCATCAGTGACGACGGCACT+TGG | 0.440675 | 8.1:-18069061 | None:intergenic |
| CCAATAATGGCAAAGCTTGG+AGG | 0.445248 | 8.1:+18069543 | MS.gene56896:CDS |
| CCTCCTACAAAACGTGGATT+GGG | 0.447871 | 8.1:-18069623 | None:intergenic |
| GTGTTAGCGGCGGAAGGAAT+CGG | 0.452634 | 8.1:-18068731 | None:intergenic |
| GGATGAACCCGTTGTGAAAA+CGG | 0.455722 | 8.1:+18069439 | MS.gene56896:CDS |
| AGCAGGATGCTCGTTGTCCT+GGG | 0.459006 | 8.1:+18069780 | MS.gene56896:CDS |
| TGAAGTAGAACATGAGGAGG+AGG | 0.466016 | 8.1:+18069337 | MS.gene56896:CDS |
| GCCAGGGTTCTTGGTGTTAG+CGG | 0.468562 | 8.1:-18068744 | None:intergenic |
| CTATGCTGCTTCGACAGATT+GGG | 0.471642 | 8.1:-18069596 | None:intergenic |
| CCAAGTGCCGTCGTCACTGA+TGG | 0.474699 | 8.1:+18069061 | MS.gene56896:CDS |
| AGTAGTAGTTCTAGTAGTGG+TGG | 0.477973 | 8.1:+18069275 | MS.gene56896:CDS |
| TGTTGTGTGGTAATGATTCC+GGG | 0.481160 | 8.1:+18069213 | MS.gene56896:CDS |
| TTCAGGTGCGGTGAAGAAGA+AGG | 0.484533 | 8.1:+18069010 | MS.gene56896:intron |
| ATGCTCGTTGTCCTGGGTGC+AGG | 0.487799 | 8.1:+18069786 | MS.gene56896:CDS |
| GGATGTCTGGATTCCAAACC+AGG | 0.491547 | 8.1:+18069494 | MS.gene56896:CDS |
| CTTATACTGCTTCAATTTCG+CGG | 0.494651 | 8.1:-18068880 | None:intergenic |
| TGGCACAGACATGCGAGACC+AGG | 0.500008 | 8.1:-18069651 | None:intergenic |
| GGAGGATGATGATGGATGCT+TGG | 0.501682 | 8.1:+18069355 | MS.gene56896:CDS |
| GTAGTGGTGGGTGTTTCTCT+GGG | 0.502450 | 8.1:+18069288 | MS.gene56896:CDS |
| CAAACGTGAATTTGAGAAAG+TGG | 0.504676 | 8.1:+18069094 | MS.gene56896:CDS |
| CGGAACGGCGGCGATTGAAT+CGG | 0.509579 | 8.1:-18068711 | None:intergenic |
| AGATGATGAAGTAGAACATG+AGG | 0.511024 | 8.1:+18069331 | MS.gene56896:CDS |
| GACAGATTGGGCAGAGTCTG+AGG | 0.516195 | 8.1:-18069584 | None:intergenic |
| CATGAGGAGGAGGATGATGA+TGG | 0.519831 | 8.1:+18069347 | MS.gene56896:CDS |
| TGATGAAGTAGAACATGAGG+AGG | 0.520977 | 8.1:+18069334 | MS.gene56896:CDS |
| CTTGGATGATTGGGAGGCTG+TGG | 0.524760 | 8.1:+18069373 | MS.gene56896:CDS |
| ATGGAGGTAGCCTTACCCTT+CGG | 0.524822 | 8.1:+18069852 | MS.gene56896:CDS |
| CAATAATGGCAAAGCTTGGA+GGG | 0.527398 | 8.1:+18069544 | MS.gene56896:CDS |
| CTCTGGGAATATTACAGAAG+AGG | 0.529198 | 8.1:+18069304 | MS.gene56896:CDS |
| CAAGTGCCGTCGTCACTGAT+GGG | 0.535118 | 8.1:+18069062 | MS.gene56896:CDS |
| GGAGTGGTGGAACGGTTCCT+CGG | 0.542795 | 8.1:+18069516 | MS.gene56896:CDS |
| CTTCCAATAATGGCAAAGCT+TGG | 0.544022 | 8.1:+18069540 | MS.gene56896:CDS |
| GATTCATCAAGACAGTGATT+CGG | 0.544172 | 8.1:+18069151 | MS.gene56896:CDS |
| TTCTTGGTGTTAGCGGCGGA+AGG | 0.545412 | 8.1:-18068737 | None:intergenic |
| TCAGGTGCGGTGAAGAAGAA+GGG | 0.549021 | 8.1:+18069011 | MS.gene56896:intron |
| TTGATGCGCGTCGTGAACAA+TGG | 0.554675 | 8.1:+18068904 | MS.gene56896:CDS |
| GGAACCGTTCCACCACTCCC+TGG | 0.559516 | 8.1:-18069512 | None:intergenic |
| AACGAGCCAACCGAAGGGTA+AGG | 0.560319 | 8.1:-18069862 | None:intergenic |
| ACTACCAGTGAAATTCGTCC+CGG | 0.566478 | 8.1:-18069231 | None:intergenic |
| AATTTGAGAAAGTGGGGACG+AGG | 0.568433 | 8.1:+18069102 | MS.gene56896:CDS |
| GATTCCGGGACGAATTTCAC+TGG | 0.570168 | 8.1:+18069227 | MS.gene56896:CDS |
| GGCTCTATGCTTCTCATCGG+CGG | 0.570378 | 8.1:-18069408 | None:intergenic |
| CTGGATTCCAAACCAGGGAG+TGG | 0.570955 | 8.1:+18069500 | MS.gene56896:CDS |
| ACACTTGCTTCTGTCTCGAT+AGG | 0.572811 | 8.1:-18069827 | None:intergenic |
| TTCACTGGTAGTAGCAGTGG+TGG | 0.572834 | 8.1:+18069242 | MS.gene56896:CDS |
| GTAGTAGTTCTAGTAGTGGT+GGG | 0.574175 | 8.1:+18069276 | MS.gene56896:CDS |
| GTGGGGACGAGGCGTAGAGG+TGG | 0.576855 | 8.1:+18069113 | MS.gene56896:CDS |
| AAACGTGAATTTGAGAAAGT+GGG | 0.577953 | 8.1:+18069095 | MS.gene56896:CDS |
| GCCGCTAACACCAAGAACCC+TGG | 0.580532 | 8.1:+18068743 | MS.gene56896:CDS |
| AGGGTTCTTGGTGTTAGCGG+CGG | 0.581566 | 8.1:-18068741 | None:intergenic |
| CAGCAAATTGGACAATTGGA+TGG | 0.582722 | 8.1:-18069671 | None:intergenic |
| GAGACAGAAGCAAGTGTGCA+TGG | 0.583579 | 8.1:+18069833 | MS.gene56896:CDS |
| GACGAGGCGTAGAGGTGGAG+AGG | 0.585813 | 8.1:+18069118 | MS.gene56896:CDS |
| AGGTAGCCTTACCCTTCGGT+TGG | 0.588790 | 8.1:+18069856 | MS.gene56896:CDS |
| GAAGCATAGAGCCTCTTCAC+AGG | 0.591659 | 8.1:+18069418 | MS.gene56896:CDS |
| GATTCCAAACCAGGGAGTGG+TGG | 0.592053 | 8.1:+18069503 | MS.gene56896:CDS |
| AGCAGTAGTAGTTCTAGTAG+TGG | 0.604603 | 8.1:+18069272 | MS.gene56896:CDS |
| CGTGAACAATGGCTATCTCA+AGG | 0.607296 | 8.1:+18068915 | MS.gene56896:CDS |
| AACGGGTTCATCCTGTGAAG+AGG | 0.611313 | 8.1:-18069429 | None:intergenic |
| GGCGATTGAATCGGAAACCA+TGG | 0.614198 | 8.1:-18068702 | None:intergenic |
| CCTGCTCAAGAATCCTCTTG+TGG | 0.614452 | 8.1:-18069763 | None:intergenic |
| GTTCTGTCAGCATGATCGAA+AGG | 0.622260 | 8.1:+18069882 | MS.gene56896:CDS |
| AGAGGCTCTATGCTTCTCAT+CGG | 0.622264 | 8.1:-18069411 | None:intergenic |
| GGCACAGACATGCGAGACCA+GGG | 0.623059 | 8.1:-18069650 | None:intergenic |
| ACAGATTGGGCAGAGTCTGA+GGG | 0.625007 | 8.1:-18069583 | None:intergenic |
| TGACAGAACGAGCCAACCGA+AGG | 0.625301 | 8.1:-18069868 | None:intergenic |
| AGCCGAAAACCACAATTGCA+CGG | 0.626352 | 8.1:-18069728 | None:intergenic |
| AAGTGCCGTCGTCACTGATG+GGG | 0.626698 | 8.1:+18069063 | MS.gene56896:CDS |
| TTGCCATTATTGGAAGTCCG+AGG | 0.630357 | 8.1:-18069533 | None:intergenic |
| CAAACCAGGGAGTGGTGGAA+CGG | 0.635703 | 8.1:+18069508 | MS.gene56896:CDS |
| TCATATTGCTTCCTGCACCC+AGG | 0.637371 | 8.1:-18069797 | None:intergenic |
| AATTTCACTGGTAGTAGCAG+TGG | 0.639931 | 8.1:+18069239 | MS.gene56896:CDS |
| CAATTGTCCAATTTGCTGTG+AGG | 0.649475 | 8.1:+18069676 | MS.gene56896:CDS |
| GGTGAAGAAGAAGGGTTGCA+AGG | 0.653357 | 8.1:+18069019 | MS.gene56896:CDS |
| AAAGTGGGGACGAGGCGTAG+AGG | 0.654882 | 8.1:+18069110 | MS.gene56896:CDS |
| GGCGGAAGGAATCGGAACGG+CGG | 0.658597 | 8.1:-18068723 | None:intergenic |
| TGTTTCCCCATCAGTGACGA+CGG | 0.662274 | 8.1:-18069068 | None:intergenic |
| GGAACCCCTCCTACAAAACG+TGG | 0.666447 | 8.1:-18069629 | None:intergenic |
| GACAGAACGAGCCAACCGAA+GGG | 0.671376 | 8.1:-18069867 | None:intergenic |
| AACGTGAATTTGAGAAAGTG+GGG | 0.674427 | 8.1:+18069096 | MS.gene56896:CDS |
| TGGATGCTTGGATGATTGGG+AGG | 0.674598 | 8.1:+18069367 | MS.gene56896:CDS |
| AGCGGCGGAAGGAATCGGAA+CGG | 0.682697 | 8.1:-18068726 | None:intergenic |
| GATTGGGCAGAGTCTGAGGG+CGG | 0.696323 | 8.1:-18069580 | None:intergenic |
| ACAGAAGCAAGTGTGCATGG+AGG | 0.724066 | 8.1:+18069836 | MS.gene56896:CDS |
| GATGTCTGGATTCCAAACCA+GGG | 0.730131 | 8.1:+18069495 | MS.gene56896:CDS |
| CCTAATAGTAGTGTGTTGTG+TGG | 0.734395 | 8.1:+18069200 | MS.gene56896:CDS |
| GGACTGATAAGACTGTTCGA+CGG | 0.743748 | 8.1:-18069179 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TAATTTTGTTATCTTTGTTA+TGG | + | chr8.1:18068984-18069003 | MS.gene56896:intron | 15.0% |
| ! | ATGACTAATTGTTTGGATTT+AGG | + | chr8.1:18069473-18069492 | MS.gene56896:CDS | 25.0% |
| ! | ATGTGAAATGACTAATTGTT+TGG | + | chr8.1:18069466-18069485 | MS.gene56896:CDS | 25.0% |
| !!! | CGATTTTTGTTTTGATCTAA+CGG | + | chr8.1:18068956-18068975 | MS.gene56896:intron | 25.0% |
| !!! | TATCTTTGTTATGGTTTTTC+AGG | + | chr8.1:18068993-18069012 | MS.gene56896:intron | 25.0% |
| AAACGTGAATTTGAGAAAGT+GGG | + | chr8.1:18069095-18069114 | MS.gene56896:CDS | 30.0% | |
| ! | AATTCGATTTTCAGACCAAT+AGG | + | chr8.1:18068856-18068875 | MS.gene56896:intron | 30.0% |
| AACGTGAATTTGAGAAAGTG+GGG | + | chr8.1:18069096-18069115 | MS.gene56896:CDS | 35.0% | |
| AGATGATGAAGTAGAACATG+AGG | + | chr8.1:18069331-18069350 | MS.gene56896:CDS | 35.0% | |
| CAAACGTGAATTTGAGAAAG+TGG | + | chr8.1:18069094-18069113 | MS.gene56896:CDS | 35.0% | |
| CTGTGAGGATCTTGATTTAA+CGG | + | chr8.1:18069691-18069710 | MS.gene56896:CDS | 35.0% | |
| CTTATACTGCTTCAATTTCG+CGG | - | chr8.1:18068883-18068902 | None:intergenic | 35.0% | |
| GATTCATCAAGACAGTGATT+CGG | + | chr8.1:18069151-18069170 | MS.gene56896:CDS | 35.0% | |
| ! | ACATGAATCCGTTTTCACAA+CGG | - | chr8.1:18069450-18069469 | None:intergenic | 35.0% |
| ! | TTGTTTGGATTTAGGATGTC+TGG | + | chr8.1:18069481-18069500 | MS.gene56896:CDS | 35.0% |
| !!! | TTGTTATGGTTTTTCAGGTG+CGG | + | chr8.1:18068998-18069017 | MS.gene56896:intron | 35.0% |
| AATTTCACTGGTAGTAGCAG+TGG | + | chr8.1:18069239-18069258 | MS.gene56896:CDS | 40.0% | |
| CAATAATGGCAAAGCTTGGA+GGG | + | chr8.1:18069544-18069563 | MS.gene56896:CDS | 40.0% | |
| CAGCAAATTGGACAATTGGA+TGG | - | chr8.1:18069674-18069693 | None:intergenic | 40.0% | |
| CCACACAACACACTACTATT+AGG | - | chr8.1:18069203-18069222 | None:intergenic | 40.0% | |
| CCTAATAGTAGTGTGTTGTG+TGG | + | chr8.1:18069200-18069219 | MS.gene56896:CDS | 40.0% | |
| CTCACAGCAAATTGGACAAT+TGG | - | chr8.1:18069678-18069697 | None:intergenic | 40.0% | |
| CTTCCAATAATGGCAAAGCT+TGG | + | chr8.1:18069540-18069559 | MS.gene56896:CDS | 40.0% | |
| TCAAGATCCTCACAGCAAAT+TGG | - | chr8.1:18069686-18069705 | None:intergenic | 40.0% | |
| TGATGAAGTAGAACATGAGG+AGG | + | chr8.1:18069334-18069353 | MS.gene56896:CDS | 40.0% | |
| ! | AGTTTTCTTCCGTGCAATTG+TGG | + | chr8.1:18069719-18069738 | MS.gene56896:CDS | 40.0% |
| ! | CATGAATCCGTTTTCACAAC+GGG | - | chr8.1:18069449-18069468 | None:intergenic | 40.0% |
| ! | CTCTGGGAATATTACAGAAG+AGG | + | chr8.1:18069304-18069323 | MS.gene56896:CDS | 40.0% |
| ! | GTGTTGTGTGGTAATGATTC+CGG | + | chr8.1:18069212-18069231 | MS.gene56896:CDS | 40.0% |
| ! | TGATGGATGCTTGGATGATT+GGG | + | chr8.1:18069364-18069383 | MS.gene56896:CDS | 40.0% |
| ! | TGTTGTGTGGTAATGATTCC+GGG | + | chr8.1:18069213-18069232 | MS.gene56896:CDS | 40.0% |
| ! | TTACCCTCTTCTTTTTGCCA+GGG | - | chr8.1:18068763-18068782 | None:intergenic | 40.0% |
| ! | TTCCGTGCAATTGTGGTTTT+CGG | + | chr8.1:18069726-18069745 | MS.gene56896:CDS | 40.0% |
| !! | AGCAGTAGTAGTTCTAGTAG+TGG | + | chr8.1:18069272-18069291 | MS.gene56896:CDS | 40.0% |
| !! | AGTAGTAGTTCTAGTAGTGG+TGG | + | chr8.1:18069275-18069294 | MS.gene56896:CDS | 40.0% |
| !! | ATGATGGATGCTTGGATGAT+TGG | + | chr8.1:18069363-18069382 | MS.gene56896:CDS | 40.0% |
| !! | CAATTGTCCAATTTGCTGTG+AGG | + | chr8.1:18069676-18069695 | MS.gene56896:CDS | 40.0% |
| !! | GTAGTAGTTCTAGTAGTGGT+GGG | + | chr8.1:18069276-18069295 | MS.gene56896:CDS | 40.0% |
| AAGAAGAAGGGTTGCAAGGA+TGG | + | chr8.1:18069023-18069042 | MS.gene56896:CDS | 45.0% | |
| AATTTGAGAAAGTGGGGACG+AGG | + | chr8.1:18069102-18069121 | MS.gene56896:CDS | 45.0% | |
| ACACTTGCTTCTGTCTCGAT+AGG | - | chr8.1:18069830-18069849 | None:intergenic | 45.0% | |
| ACTACCAGTGAAATTCGTCC+CGG | - | chr8.1:18069234-18069253 | None:intergenic | 45.0% | |
| AGAACCCTGGCAAAAAGAAG+AGG | + | chr8.1:18068756-18068775 | MS.gene56896:CDS | 45.0% | |
| AGAGGCTCTATGCTTCTCAT+CGG | - | chr8.1:18069414-18069433 | None:intergenic | 45.0% | |
| AGCCGAAAACCACAATTGCA+CGG | - | chr8.1:18069731-18069750 | None:intergenic | 45.0% | |
| CCAATAATGGCAAAGCTTGG+AGG | + | chr8.1:18069543-18069562 | MS.gene56896:CDS | 45.0% | |
| CCTCCAAGCTTTGCCATTAT+TGG | - | chr8.1:18069546-18069565 | None:intergenic | 45.0% | |
| CCTCCTACAAAACGTGGATT+GGG | - | chr8.1:18069626-18069645 | None:intergenic | 45.0% | |
| CGCGTGAGTTCGAATTAGAA+CGG | - | chr8.1:18068830-18068849 | None:intergenic | 45.0% | |
| CGTGAACAATGGCTATCTCA+AGG | + | chr8.1:18068915-18068934 | MS.gene56896:CDS | 45.0% | |
| CTTCAATTTCGCGGACCTAT+TGG | - | chr8.1:18068874-18068893 | None:intergenic | 45.0% | |
| GAACCCTGGCAAAAAGAAGA+GGG | + | chr8.1:18068757-18068776 | MS.gene56896:CDS | 45.0% | |
| GATGTCTGGATTCCAAACCA+GGG | + | chr8.1:18069495-18069514 | MS.gene56896:CDS | 45.0% | |
| GGACTGATAAGACTGTTCGA+CGG | - | chr8.1:18069182-18069201 | None:intergenic | 45.0% | |
| GGATGAACCCGTTGTGAAAA+CGG | + | chr8.1:18069439-18069458 | MS.gene56896:CDS | 45.0% | |
| GTTCCTCGGACTTCCAATAA+TGG | + | chr8.1:18069530-18069549 | MS.gene56896:CDS | 45.0% | |
| GTTCTGTCAGCATGATCGAA+AGG | + | chr8.1:18069882-18069901 | MS.gene56896:CDS | 45.0% | |
| TGAAGTAGAACATGAGGAGG+AGG | + | chr8.1:18069337-18069356 | MS.gene56896:CDS | 45.0% | |
| TTGCCATTATTGGAAGTCCG+AGG | - | chr8.1:18069536-18069555 | None:intergenic | 45.0% | |
| ! | ACTATGCTGCTTCGACAGAT+TGG | - | chr8.1:18069600-18069619 | None:intergenic | 45.0% |
| ! | ATGCCCAATCCACGTTTTGT+AGG | + | chr8.1:18069620-18069639 | MS.gene56896:CDS | 45.0% |
| ! | CAATCCACGTTTTGTAGGAG+GGG | + | chr8.1:18069625-18069644 | MS.gene56896:CDS | 45.0% |
| ! | CCAATCCACGTTTTGTAGGA+GGG | + | chr8.1:18069624-18069643 | MS.gene56896:CDS | 45.0% |
| ! | CTATGCTGCTTCGACAGATT+GGG | - | chr8.1:18069599-18069618 | None:intergenic | 45.0% |
| ! | CTTCTTTTTGCCAGGGTTCT+TGG | - | chr8.1:18068756-18068775 | None:intergenic | 45.0% |
| ! | GTTACCCTCTTCTTTTTGCC+AGG | - | chr8.1:18068764-18068783 | None:intergenic | 45.0% |
| ! | TCTGTCTCTTTTGCCACAAG+AGG | + | chr8.1:18069750-18069769 | MS.gene56896:CDS | 45.0% |
| !! | CAAAAAAAAATTTATATAAT+CGG | - | chr8.1:18068803-18068822 | None:intergenic | 5.0% |
| ACAGAAGCAAGTGTGCATGG+AGG | + | chr8.1:18069836-18069855 | MS.gene56896:CDS | 50.0% | |
| ACAGATTGGGCAGAGTCTGA+GGG | - | chr8.1:18069586-18069605 | None:intergenic | 50.0% | |
| CATGAGGAGGAGGATGATGA+TGG | + | chr8.1:18069347-18069366 | MS.gene56896:CDS | 50.0% | |
| CCACAAGAGGATTCTTGAGC+AGG | + | chr8.1:18069763-18069782 | MS.gene56896:CDS | 50.0% | |
| CCCTCCTACAAAACGTGGAT+TGG | - | chr8.1:18069627-18069646 | None:intergenic | 50.0% | |
| CCTGCTCAAGAATCCTCTTG+TGG | - | chr8.1:18069766-18069785 | None:intergenic | 50.0% | |
| GAAGCATAGAGCCTCTTCAC+AGG | + | chr8.1:18069418-18069437 | MS.gene56896:CDS | 50.0% | |
| GAAGGGTTGCAAGGATGGAT+TGG | + | chr8.1:18069028-18069047 | MS.gene56896:CDS | 50.0% | |
| GAGACAGAAGCAAGTGTGCA+TGG | + | chr8.1:18069833-18069852 | MS.gene56896:CDS | 50.0% | |
| GATTCCGGGACGAATTTCAC+TGG | + | chr8.1:18069227-18069246 | MS.gene56896:CDS | 50.0% | |
| GGATGTCTGGATTCCAAACC+AGG | + | chr8.1:18069494-18069513 | MS.gene56896:CDS | 50.0% | |
| GGTGAAGAAGAAGGGTTGCA+AGG | + | chr8.1:18069019-18069038 | MS.gene56896:CDS | 50.0% | |
| TCAGGTGCGGTGAAGAAGAA+GGG | + | chr8.1:18069011-18069030 | MS.gene56896:intron | 50.0% | |
| TCATATTGCTTCCTGCACCC+AGG | - | chr8.1:18069800-18069819 | None:intergenic | 50.0% | |
| TGGATGCTTGGATGATTGGG+AGG | + | chr8.1:18069367-18069386 | MS.gene56896:CDS | 50.0% | |
| TGTTTCCCCATCAGTGACGA+CGG | - | chr8.1:18069071-18069090 | None:intergenic | 50.0% | |
| TTCACTGGTAGTAGCAGTGG+TGG | + | chr8.1:18069242-18069261 | MS.gene56896:CDS | 50.0% | |
| TTCAGGTGCGGTGAAGAAGA+AGG | + | chr8.1:18069010-18069029 | MS.gene56896:intron | 50.0% | |
| TTGATGCGCGTCGTGAACAA+TGG | + | chr8.1:18068904-18068923 | MS.gene56896:CDS | 50.0% | |
| ! | AACGGGTTCATCCTGTGAAG+AGG | - | chr8.1:18069432-18069451 | None:intergenic | 50.0% |
| ! | ATGGAGGTAGCCTTACCCTT+CGG | + | chr8.1:18069852-18069871 | MS.gene56896:CDS | 50.0% |
| ! | CCCAATCCACGTTTTGTAGG+AGG | + | chr8.1:18069623-18069642 | MS.gene56896:CDS | 50.0% |
| !! | AGTAGTGGTGGGTGTTTCTC+TGG | + | chr8.1:18069287-18069306 | MS.gene56896:CDS | 50.0% |
| !! | GGAGGATGATGATGGATGCT+TGG | + | chr8.1:18069355-18069374 | MS.gene56896:CDS | 50.0% |
| !! | GTAGTGGTGGGTGTTTCTCT+GGG | + | chr8.1:18069288-18069307 | MS.gene56896:CDS | 50.0% |
| AACGAGCCAACCGAAGGGTA+AGG | - | chr8.1:18069865-18069884 | None:intergenic | 55.0% | |
| AGCAGGATGCTCGTTGTCCT+GGG | + | chr8.1:18069780-18069799 | MS.gene56896:CDS | 55.0% | |
| CTGGATTCCAAACCAGGGAG+TGG | + | chr8.1:18069500-18069519 | MS.gene56896:CDS | 55.0% | |
| CTTGGATGATTGGGAGGCTG+TGG | + | chr8.1:18069373-18069392 | MS.gene56896:CDS | 55.0% | |
| GACAGAACGAGCCAACCGAA+GGG | - | chr8.1:18069870-18069889 | None:intergenic | 55.0% | |
| GACAGATTGGGCAGAGTCTG+AGG | - | chr8.1:18069587-18069606 | None:intergenic | 55.0% | |
| GATTCCAAACCAGGGAGTGG+TGG | + | chr8.1:18069503-18069522 | MS.gene56896:CDS | 55.0% | |
| GGAACCCCTCCTACAAAACG+TGG | - | chr8.1:18069632-18069651 | None:intergenic | 55.0% | |
| GGCTCTATGCTTCTCATCGG+CGG | - | chr8.1:18069411-18069430 | None:intergenic | 55.0% | |
| GTGTTAGCGGCGGAAGGAAT+CGG | - | chr8.1:18068734-18068753 | None:intergenic | 55.0% | |
| TGACAGAACGAGCCAACCGA+AGG | - | chr8.1:18069871-18069890 | None:intergenic | 55.0% | |
| ! | AAGTGCCGTCGTCACTGATG+GGG | + | chr8.1:18069063-18069082 | MS.gene56896:CDS | 55.0% |
| ! | AGGTAGCCTTACCCTTCGGT+TGG | + | chr8.1:18069856-18069875 | MS.gene56896:CDS | 55.0% |
| ! | CAAACCAGGGAGTGGTGGAA+CGG | + | chr8.1:18069508-18069527 | MS.gene56896:CDS | 55.0% |
| ! | CAAGTGCCGTCGTCACTGAT+GGG | + | chr8.1:18069062-18069081 | MS.gene56896:CDS | 55.0% |
| ! | GTTTTGTAGGAGGGGTTCCC+TGG | + | chr8.1:18069633-18069652 | MS.gene56896:CDS | 55.0% |
| !! | AGGGTTCTTGGTGTTAGCGG+CGG | - | chr8.1:18068744-18068763 | None:intergenic | 55.0% |
| !! | GCCAGGGTTCTTGGTGTTAG+CGG | - | chr8.1:18068747-18068766 | None:intergenic | 55.0% |
| !! | TTCTTGGTGTTAGCGGCGGA+AGG | - | chr8.1:18068740-18068759 | None:intergenic | 55.0% |
| AAAGTGGGGACGAGGCGTAG+AGG | + | chr8.1:18069110-18069129 | MS.gene56896:CDS | 60.0% | |
| AGCGGCGGAAGGAATCGGAA+CGG | - | chr8.1:18068729-18068748 | None:intergenic | 60.0% | |
| ATGCTCGTTGTCCTGGGTGC+AGG | + | chr8.1:18069786-18069805 | MS.gene56896:CDS | 60.0% | |
| CCATCAGTGACGACGGCACT+TGG | - | chr8.1:18069064-18069083 | None:intergenic | 60.0% | |
| CGGAACGGCGGCGATTGAAT+CGG | - | chr8.1:18068714-18068733 | None:intergenic | 60.0% | |
| CGTTCCACCACTCCCTGGTT+TGG | - | chr8.1:18069510-18069529 | None:intergenic | 60.0% | |
| GAGCAGGATGCTCGTTGTCC+TGG | + | chr8.1:18069779-18069798 | MS.gene56896:CDS | 60.0% | |
| GATTGGGCAGAGTCTGAGGG+CGG | - | chr8.1:18069583-18069602 | None:intergenic | 60.0% | |
| GCCGCTAACACCAAGAACCC+TGG | + | chr8.1:18068743-18068762 | MS.gene56896:CDS | 60.0% | |
| GGCACAGACATGCGAGACCA+GGG | - | chr8.1:18069653-18069672 | None:intergenic | 60.0% | |
| TGGCACAGACATGCGAGACC+AGG | - | chr8.1:18069654-18069673 | None:intergenic | 60.0% | |
| ! | CCAAGTGCCGTCGTCACTGA+TGG | + | chr8.1:18069061-18069080 | MS.gene56896:CDS | 60.0% |
| ! | GGAGTGGTGGAACGGTTCCT+CGG | + | chr8.1:18069516-18069535 | MS.gene56896:CDS | 60.0% |
| GACGAGGCGTAGAGGTGGAG+AGG | + | chr8.1:18069118-18069137 | MS.gene56896:CDS | 65.0% | |
| GGAACCGTTCCACCACTCCC+TGG | - | chr8.1:18069515-18069534 | None:intergenic | 65.0% | |
| GGCGGAAGGAATCGGAACGG+CGG | - | chr8.1:18068726-18068745 | None:intergenic | 65.0% | |
| GTGGGGACGAGGCGTAGAGG+TGG | + | chr8.1:18069113-18069132 | MS.gene56896:CDS | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8.1 | gene | 18068704 | 18069910 | 18068704 | ID=MS.gene56896 |
| chr8.1 | mRNA | 18068704 | 18069910 | 18068704 | ID=MS.gene56896.t1;Parent=MS.gene56896 |
| chr8.1 | exon | 18068704 | 18068778 | 18068704 | ID=MS.gene56896.t1.exon1;Parent=MS.gene56896.t1 |
| chr8.1 | CDS | 18068704 | 18068778 | 18068704 | ID=cds.MS.gene56896.t1;Parent=MS.gene56896.t1 |
| chr8.1 | exon | 18068870 | 18068936 | 18068870 | ID=MS.gene56896.t1.exon2;Parent=MS.gene56896.t1 |
| chr8.1 | CDS | 18068870 | 18068936 | 18068870 | ID=cds.MS.gene56896.t1;Parent=MS.gene56896.t1 |
| chr8.1 | exon | 18069015 | 18069910 | 18069015 | ID=MS.gene56896.t1.exon3;Parent=MS.gene56896.t1 |
| chr8.1 | CDS | 18069015 | 18069910 | 18069015 | ID=cds.MS.gene56896.t1;Parent=MS.gene56896.t1 |
| Gene Sequence |
| Protein sequence |
