Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene43272.t1 | RHN63559.1 | 95.1 | 348 | 15 | 2 | 1 | 346 | 1 | 348 | 2.10E-158 | 568.5 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene43272.t1 | P34909 | 44.4 | 54 | 27 | 1 | 271 | 321 | 33 | 86 | 1.4e-09 | 65.5 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene43272.t1 | A0A396IDB7 | 95.1 | 348 | 15 | 2 | 1 | 346 | 1 | 348 | 1.5e-158 | 568.5 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene033202 | MS.gene43272 | PPI |
| MS.gene43272 | MS.gene56896 | PPI |
| MS.gene43272 | MS.gene60326 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene43272.t1 | MTR_4g107090 | 91.903 | 247 | 18 | 2 | 1 | 245 | 1 | 247 | 4.76e-118 | 341 |
| MS.gene43272.t1 | MTR_6g008950 | 44.013 | 309 | 124 | 12 | 22 | 317 | 14 | 286 | 4.52e-57 | 188 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene43272.t1 | AT5G62910 | 44.199 | 362 | 145 | 12 | 1 | 343 | 1 | 324 | 9.33e-68 | 216 |
| MS.gene43272.t1 | AT5G62910 | 44.199 | 362 | 145 | 12 | 1 | 343 | 1 | 324 | 9.33e-68 | 216 |
| MS.gene43272.t1 | AT3G48070 | 44.986 | 349 | 159 | 8 | 1 | 346 | 1 | 319 | 2.06e-64 | 207 |
| MS.gene43272.t1 | AT3G48070 | 44.828 | 348 | 159 | 8 | 1 | 345 | 1 | 318 | 1.37e-63 | 206 |
| MS.gene43272.t1 | AT3G48070 | 46.429 | 252 | 108 | 6 | 96 | 345 | 43 | 269 | 2.68e-43 | 152 |
| MS.gene43272.t1 | AT1G74870 | 31.169 | 308 | 130 | 9 | 22 | 317 | 21 | 258 | 2.78e-27 | 108 |
Find 110 sgRNAs with CRISPR-Local
Find 130 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CCTCCAAGCTTTGCCATTAT+TGG | 0.149479 | 8.4:-20274729 | None:intergenic |
| ATGACTAATTGTTTGGATTT+AGG | 0.231862 | 8.4:+20274659 | MS.gene43272:CDS |
| AGTAGTGGTGGGTGTTTCTC+TGG | 0.244371 | 8.4:+20274470 | MS.gene43272:CDS |
| CTTCAATTTCGCGGACCTAT+TGG | 0.323866 | 8.4:-20274054 | None:intergenic |
| GAGCAGGATGCTCGTTGTCC+TGG | 0.324362 | 8.4:+20274965 | MS.gene43272:CDS |
| TCAAGATCCTCACAGCAAAT+TGG | 0.334616 | 8.4:-20274869 | None:intergenic |
| CCACACAACACACTACTATT+AGG | 0.338725 | 8.4:-20274383 | None:intergenic |
| TTGTTTGGATTTAGGATGTC+TGG | 0.342987 | 8.4:+20274667 | MS.gene43272:CDS |
| GTGTTGTGTGGTAATGATTC+CGG | 0.352982 | 8.4:+20274395 | MS.gene43272:CDS |
| CGTTCCACCACTCCCTGGTT+TGG | 0.368101 | 8.4:-20274693 | None:intergenic |
| CTGTGAGGATCTTGATTTAA+CGG | 0.370410 | 8.4:+20274877 | MS.gene43272:CDS |
| ATGTGAAATGACTAATTGTT+TGG | 0.385906 | 8.4:+20274652 | MS.gene43272:CDS |
| AAGAAGAAGGGTTGCAAGGA+TGG | 0.391810 | 8.4:+20274206 | MS.gene43272:CDS |
| ACTATGCTGCTTTGACAGAT+TGG | 0.398062 | 8.4:-20274783 | None:intergenic |
| CTCACAGCAAATTGGACAAT+TGG | 0.402448 | 8.4:-20274861 | None:intergenic |
| CCACAAGAGGATTCTTGAGC+AGG | 0.406130 | 8.4:+20274949 | MS.gene43272:CDS |
| CCCTCCTACAAAACGTGGAT+TGG | 0.407656 | 8.4:-20274810 | None:intergenic |
| ATGATGGATGCTTGGATGAT+TGG | 0.408221 | 8.4:+20274549 | MS.gene43272:CDS |
| GAAACAGAGCAAACGTGAAT+TGG | 0.411752 | 8.4:+20274268 | MS.gene43272:CDS |
| GTTCCTCGGACTTCCAATAA+TGG | 0.418163 | 8.4:+20274716 | MS.gene43272:CDS |
| GAAGGGTTGCAAGGATGGAT+TGG | 0.423739 | 8.4:+20274211 | MS.gene43272:CDS |
| TGATGGATGCTTGGATGATT+GGG | 0.423751 | 8.4:+20274550 | MS.gene43272:CDS |
| ACACTACTATTAGGACTGAT+AGG | 0.429535 | 8.4:-20274374 | None:intergenic |
| AGAAGTAGAACATGAGGAGG+AGG | 0.433655 | 8.4:+20274523 | MS.gene43272:CDS |
| CCAATAATGGCAAAGCTTGG+AGG | 0.445248 | 8.4:+20274729 | MS.gene43272:CDS |
| CCTCCTACAAAACGTGGATT+GGG | 0.447871 | 8.4:-20274809 | None:intergenic |
| CGTTTGCTCTGTTTCCCCAC+CGG | 0.450401 | 8.4:-20274260 | None:intergenic |
| GTGTTAGCGGCGGAAGGAAT+CGG | 0.452634 | 8.4:-20273916 | None:intergenic |
| GGATGAACCCGTTGTGAAAA+CGG | 0.455722 | 8.4:+20274625 | MS.gene43272:CDS |
| CTATGCTGCTTTGACAGATT+GGG | 0.456356 | 8.4:-20274782 | None:intergenic |
| AGCAGGATGCTCGTTGTCCT+GGG | 0.459006 | 8.4:+20274966 | MS.gene43272:CDS |
| GCCAGGATTCTTGGTGTTAG+CGG | 0.468562 | 8.4:-20273929 | None:intergenic |
| AGTAGTAGTTCTAGTAGTGG+TGG | 0.477973 | 8.4:+20274458 | MS.gene43272:CDS |
| TGTTGTGTGGTAATGATTCC+GGG | 0.481160 | 8.4:+20274396 | MS.gene43272:CDS |
| TTCAGGTGCGGTGAAGAAGA+AGG | 0.484533 | 8.4:+20274193 | MS.gene43272:intron |
| ATGCTCGTTGTCCTGGGTGC+AGG | 0.487799 | 8.4:+20274972 | MS.gene43272:CDS |
| GGATGTCTGGATTCCAAACC+AGG | 0.491547 | 8.4:+20274680 | MS.gene43272:CDS |
| CTTATACTGCTTCAATTTCG+CGG | 0.494651 | 8.4:-20274063 | None:intergenic |
| GCCGCTAACACCAAGAATCC+TGG | 0.495843 | 8.4:+20273928 | MS.gene43272:CDS |
| CAAACGTGAATTGGAGAAAG+TGG | 0.497957 | 8.4:+20274277 | MS.gene43272:CDS |
| TGGCACAGACATGCGAGACC+AGG | 0.500008 | 8.4:-20274837 | None:intergenic |
| GGAGGATGATGATGGATGCT+TGG | 0.501682 | 8.4:+20274541 | MS.gene43272:CDS |
| GTAGTGGTGGGTGTTTCTCT+GGG | 0.502450 | 8.4:+20274471 | MS.gene43272:CDS |
| TGATGAAGAAGTAGAACATG+AGG | 0.511024 | 8.4:+20274517 | MS.gene43272:CDS |
| TGTCCACGTGCCGTCGTCAC+CGG | 0.513705 | 8.4:+20274241 | MS.gene43272:CDS |
| CATGAGGAGGAGGATGATGA+TGG | 0.519831 | 8.4:+20274533 | MS.gene43272:CDS |
| GACAGATTGGGCAGAGTCTG+AGG | 0.522552 | 8.4:-20274770 | None:intergenic |
| CTTGGATGATTGGGAGGCTG+TGG | 0.524760 | 8.4:+20274559 | MS.gene43272:CDS |
| ATGGAGGTAGCCTTACCCTT+CGG | 0.524822 | 8.4:+20275038 | MS.gene43272:CDS |
| CCACGTGCCGTCGTCACCGG+TGG | 0.526195 | 8.4:+20274244 | MS.gene43272:CDS |
| CAATAATGGCAAAGCTTGGA+GGG | 0.527398 | 8.4:+20274730 | MS.gene43272:CDS |
| CTCTGGGAATATTACAGAAG+AGG | 0.529198 | 8.4:+20274487 | MS.gene43272:CDS |
| CACGTGCCGTCGTCACCGGT+GGG | 0.533815 | 8.4:+20274245 | MS.gene43272:CDS |
| TGAAGAAGTAGAACATGAGG+AGG | 0.536990 | 8.4:+20274520 | MS.gene43272:CDS |
| GGAGTGGTGGAACGGTTCCT+CGG | 0.542795 | 8.4:+20274702 | MS.gene43272:CDS |
| CCACCGGTGACGACGGCACG+TGG | 0.543888 | 8.4:-20274244 | None:intergenic |
| CTTCCAATAATGGCAAAGCT+TGG | 0.544022 | 8.4:+20274726 | MS.gene43272:CDS |
| TTCTTGGTGTTAGCGGCGGA+AGG | 0.547431 | 8.4:-20273922 | None:intergenic |
| TCAGGTGCGGTGAAGAAGAA+GGG | 0.549021 | 8.4:+20274194 | MS.gene43272:intron |
| GGCGATTGAATCTGAAACCA+TGG | 0.552929 | 8.4:-20273887 | None:intergenic |
| AATTGGAGAAAGTGGGGACG+AGG | 0.553428 | 8.4:+20274285 | MS.gene43272:CDS |
| TTGATGCGCGTCGTGAACAA+TGG | 0.554675 | 8.4:+20274087 | MS.gene43272:CDS |
| GGAACCGTTCCACCACTCCC+TGG | 0.559516 | 8.4:-20274698 | None:intergenic |
| AACGAGCCAACCGAAGGGTA+AGG | 0.560319 | 8.4:-20275048 | None:intergenic |
| ACTACCAGTGAAATTCGTCC+CGG | 0.566478 | 8.4:-20274414 | None:intergenic |
| GATTCCGGGACGAATTTCAC+TGG | 0.570168 | 8.4:+20274410 | MS.gene43272:CDS |
| GGCTCTATGCTTCTCATCGG+CGG | 0.570378 | 8.4:-20274594 | None:intergenic |
| CTGGATTCCAAACCAGGGAG+TGG | 0.570955 | 8.4:+20274686 | MS.gene43272:CDS |
| ACACTTGCTTCTGTCTCGAT+AGG | 0.572811 | 8.4:-20275013 | None:intergenic |
| TTCACTGGTAGTAGCAGTGG+TGG | 0.572834 | 8.4:+20274425 | MS.gene43272:CDS |
| GTAGTAGTTCTAGTAGTGGT+GGG | 0.574175 | 8.4:+20274459 | MS.gene43272:CDS |
| GTGGGGACGAGGCGTAGAGG+TGG | 0.576855 | 8.4:+20274296 | MS.gene43272:CDS |
| CAGCAAATTGGACAATTGGA+TGG | 0.582722 | 8.4:-20274857 | None:intergenic |
| GAGACAGAAGCAAGTGTGCA+TGG | 0.583579 | 8.4:+20275019 | MS.gene43272:CDS |
| GACGAGGCGTAGAGGTGGAG+AGG | 0.585813 | 8.4:+20274301 | MS.gene43272:CDS |
| AAACGTGAATTGGAGAAAGT+GGG | 0.587309 | 8.4:+20274278 | MS.gene43272:CDS |
| AGGTAGCCTTACCCTTCGGT+TGG | 0.588790 | 8.4:+20275042 | MS.gene43272:CDS |
| GAAGCATAGAGCCTCTTCAC+AGG | 0.591659 | 8.4:+20274604 | MS.gene43272:CDS |
| TGTTTCCCCACCGGTGACGA+CGG | 0.591835 | 8.4:-20274251 | None:intergenic |
| ACAGATTGGGCAGAGTCTGA+GGG | 0.592006 | 8.4:-20274769 | None:intergenic |
| GATTCCAAACCAGGGAGTGG+TGG | 0.592053 | 8.4:+20274689 | MS.gene43272:CDS |
| AGGATTCTTGGTGTTAGCGG+CGG | 0.602387 | 8.4:-20273926 | None:intergenic |
| AGCAGTAGTAGTTCTAGTAG+TGG | 0.604603 | 8.4:+20274455 | MS.gene43272:CDS |
| CGTGAACAATGGCTATCTCA+AGG | 0.607296 | 8.4:+20274098 | MS.gene43272:CDS |
| AACGGGTTCATCCTGTGAAG+AGG | 0.611313 | 8.4:-20274615 | None:intergenic |
| CCTGCTCAAGAATCCTCTTG+TGG | 0.614452 | 8.4:-20274949 | None:intergenic |
| GTTCTGTCAGCATGATCGAA+AGG | 0.622260 | 8.4:+20275068 | MS.gene43272:CDS |
| AGAGGCTCTATGCTTCTCAT+CGG | 0.622264 | 8.4:-20274597 | None:intergenic |
| GGCACAGACATGCGAGACCA+GGG | 0.623059 | 8.4:-20274836 | None:intergenic |
| TGACAGAACGAGCCAACCGA+AGG | 0.625301 | 8.4:-20275054 | None:intergenic |
| AGCCGAAAACCACAATTGCA+CGG | 0.626352 | 8.4:-20274914 | None:intergenic |
| TTGCCATTATTGGAAGTCCG+AGG | 0.630357 | 8.4:-20274719 | None:intergenic |
| AAAGTGGGGACGAGGCGTAG+AGG | 0.631420 | 8.4:+20274293 | MS.gene43272:CDS |
| CAAACCAGGGAGTGGTGGAA+CGG | 0.635703 | 8.4:+20274694 | MS.gene43272:CDS |
| TCATATTGCTTCCTGCACCC+AGG | 0.637371 | 8.4:-20274983 | None:intergenic |
| AATTTCACTGGTAGTAGCAG+TGG | 0.639931 | 8.4:+20274422 | MS.gene43272:CDS |
| CAATTGTCCAATTTGCTGTG+AGG | 0.649475 | 8.4:+20274862 | MS.gene43272:CDS |
| ACGTGCCGTCGTCACCGGTG+GGG | 0.652762 | 8.4:+20274246 | MS.gene43272:CDS |
| GGTGAAGAAGAAGGGTTGCA+AGG | 0.653357 | 8.4:+20274202 | MS.gene43272:CDS |
| GGCGGAAGGAATCGGAACGG+CGG | 0.658597 | 8.4:-20273908 | None:intergenic |
| GGAACCCCTCCTACAAAACG+TGG | 0.666447 | 8.4:-20274815 | None:intergenic |
| GACAGAACGAGCCAACCGAA+GGG | 0.671376 | 8.4:-20275053 | None:intergenic |
| TGGATGCTTGGATGATTGGG+AGG | 0.674598 | 8.4:+20274553 | MS.gene43272:CDS |
| AACGTGAATTGGAGAAAGTG+GGG | 0.676724 | 8.4:+20274279 | MS.gene43272:CDS |
| AGCGGCGGAAGGAATCGGAA+CGG | 0.682697 | 8.4:-20273911 | None:intergenic |
| GATTGGGCAGAGTCTGAGGG+CGG | 0.696323 | 8.4:-20274766 | None:intergenic |
| ACAGAAGCAAGTGTGCATGG+AGG | 0.724066 | 8.4:+20275022 | MS.gene43272:CDS |
| GATGTCTGGATTCCAAACCA+GGG | 0.730131 | 8.4:+20274681 | MS.gene43272:CDS |
| CCTAATAGTAGTGTGTTGTG+TGG | 0.734395 | 8.4:+20274383 | MS.gene43272:CDS |
| GGACTGATAGGACTGTTCGA+CGG | 0.740618 | 8.4:-20274362 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TAATTTTGTTATCTTTGTTA+TGG | + | chr8.4:20274167-20274186 | MS.gene43272:intron | 15.0% |
| ! | ATGACTAATTGTTTGGATTT+AGG | + | chr8.4:20274659-20274678 | MS.gene43272:CDS | 25.0% |
| ! | ATGTGAAATGACTAATTGTT+TGG | + | chr8.4:20274652-20274671 | MS.gene43272:CDS | 25.0% |
| !! | AATTCTATTTTCAGACCAAT+AGG | + | chr8.4:20274039-20274058 | MS.gene43272:intron | 25.0% |
| !!! | CGATTTTTGTTTTGATCTAA+TGG | + | chr8.4:20274139-20274158 | MS.gene43272:intron | 25.0% |
| !!! | TATCTTTGTTATGGTTTTTC+AGG | + | chr8.4:20274176-20274195 | MS.gene43272:intron | 25.0% |
| AAACGTGAATTGGAGAAAGT+GGG | + | chr8.4:20274278-20274297 | MS.gene43272:CDS | 35.0% | |
| ACACTACTATTAGGACTGAT+AGG | - | chr8.4:20274377-20274396 | None:intergenic | 35.0% | |
| CTGTGAGGATCTTGATTTAA+CGG | + | chr8.4:20274877-20274896 | MS.gene43272:CDS | 35.0% | |
| CTTATACTGCTTCAATTTCG+CGG | - | chr8.4:20274066-20274085 | None:intergenic | 35.0% | |
| TGATGAAGAAGTAGAACATG+AGG | + | chr8.4:20274517-20274536 | MS.gene43272:CDS | 35.0% | |
| ! | ACATGAATCCGTTTTCACAA+CGG | - | chr8.4:20274636-20274655 | None:intergenic | 35.0% |
| ! | TTGTTTGGATTTAGGATGTC+TGG | + | chr8.4:20274667-20274686 | MS.gene43272:CDS | 35.0% |
| !!! | TTGTTATGGTTTTTCAGGTG+CGG | + | chr8.4:20274181-20274200 | MS.gene43272:intron | 35.0% |
| AACGTGAATTGGAGAAAGTG+GGG | + | chr8.4:20274279-20274298 | MS.gene43272:CDS | 40.0% | |
| AATTTCACTGGTAGTAGCAG+TGG | + | chr8.4:20274422-20274441 | MS.gene43272:CDS | 40.0% | |
| AGAATCCTGGCAAAAAGAAG+AGG | + | chr8.4:20273941-20273960 | MS.gene43272:CDS | 40.0% | |
| CAAACGTGAATTGGAGAAAG+TGG | + | chr8.4:20274277-20274296 | MS.gene43272:CDS | 40.0% | |
| CAATAATGGCAAAGCTTGGA+GGG | + | chr8.4:20274730-20274749 | MS.gene43272:CDS | 40.0% | |
| CAGCAAATTGGACAATTGGA+TGG | - | chr8.4:20274860-20274879 | None:intergenic | 40.0% | |
| CCACACAACACACTACTATT+AGG | - | chr8.4:20274386-20274405 | None:intergenic | 40.0% | |
| CCTAATAGTAGTGTGTTGTG+TGG | + | chr8.4:20274383-20274402 | MS.gene43272:CDS | 40.0% | |
| CTCACAGCAAATTGGACAAT+TGG | - | chr8.4:20274864-20274883 | None:intergenic | 40.0% | |
| CTTCCAATAATGGCAAAGCT+TGG | + | chr8.4:20274726-20274745 | MS.gene43272:CDS | 40.0% | |
| GAAACAGAGCAAACGTGAAT+TGG | + | chr8.4:20274268-20274287 | MS.gene43272:CDS | 40.0% | |
| GAATCCTGGCAAAAAGAAGA+GGG | + | chr8.4:20273942-20273961 | MS.gene43272:CDS | 40.0% | |
| TCAAGATCCTCACAGCAAAT+TGG | - | chr8.4:20274872-20274891 | None:intergenic | 40.0% | |
| TGAAGAAGTAGAACATGAGG+AGG | + | chr8.4:20274520-20274539 | MS.gene43272:CDS | 40.0% | |
| ! | AGTTTTCTTCCGTGCAATTG+TGG | + | chr8.4:20274905-20274924 | MS.gene43272:CDS | 40.0% |
| ! | CATGAATCCGTTTTCACAAC+GGG | - | chr8.4:20274635-20274654 | None:intergenic | 40.0% |
| ! | CTCTGGGAATATTACAGAAG+AGG | + | chr8.4:20274487-20274506 | MS.gene43272:CDS | 40.0% |
| ! | CTTCTTTTTGCCAGGATTCT+TGG | - | chr8.4:20273941-20273960 | None:intergenic | 40.0% |
| ! | GTGTTGTGTGGTAATGATTC+CGG | + | chr8.4:20274395-20274414 | MS.gene43272:CDS | 40.0% |
| ! | TGATGGATGCTTGGATGATT+GGG | + | chr8.4:20274550-20274569 | MS.gene43272:CDS | 40.0% |
| ! | TGTTGTGTGGTAATGATTCC+GGG | + | chr8.4:20274396-20274415 | MS.gene43272:CDS | 40.0% |
| ! | TTCCGTGCAATTGTGGTTTT+CGG | + | chr8.4:20274912-20274931 | MS.gene43272:CDS | 40.0% |
| !! | ACTATGCTGCTTTGACAGAT+TGG | - | chr8.4:20274786-20274805 | None:intergenic | 40.0% |
| !! | AGCAGTAGTAGTTCTAGTAG+TGG | + | chr8.4:20274455-20274474 | MS.gene43272:CDS | 40.0% |
| !! | AGTAGTAGTTCTAGTAGTGG+TGG | + | chr8.4:20274458-20274477 | MS.gene43272:CDS | 40.0% |
| !! | ATGATGGATGCTTGGATGAT+TGG | + | chr8.4:20274549-20274568 | MS.gene43272:CDS | 40.0% |
| !! | CAATTGTCCAATTTGCTGTG+AGG | + | chr8.4:20274862-20274881 | MS.gene43272:CDS | 40.0% |
| !! | CTATGCTGCTTTGACAGATT+GGG | - | chr8.4:20274785-20274804 | None:intergenic | 40.0% |
| !! | GTAGTAGTTCTAGTAGTGGT+GGG | + | chr8.4:20274459-20274478 | MS.gene43272:CDS | 40.0% |
| AAGAAGAAGGGTTGCAAGGA+TGG | + | chr8.4:20274206-20274225 | MS.gene43272:CDS | 45.0% | |
| ACACTTGCTTCTGTCTCGAT+AGG | - | chr8.4:20275016-20275035 | None:intergenic | 45.0% | |
| ACTACCAGTGAAATTCGTCC+CGG | - | chr8.4:20274417-20274436 | None:intergenic | 45.0% | |
| AGAAGTAGAACATGAGGAGG+AGG | + | chr8.4:20274523-20274542 | MS.gene43272:CDS | 45.0% | |
| AGAGGCTCTATGCTTCTCAT+CGG | - | chr8.4:20274600-20274619 | None:intergenic | 45.0% | |
| AGCCGAAAACCACAATTGCA+CGG | - | chr8.4:20274917-20274936 | None:intergenic | 45.0% | |
| CCAATAATGGCAAAGCTTGG+AGG | + | chr8.4:20274729-20274748 | MS.gene43272:CDS | 45.0% | |
| CCTCCAAGCTTTGCCATTAT+TGG | - | chr8.4:20274732-20274751 | None:intergenic | 45.0% | |
| CCTCCTACAAAACGTGGATT+GGG | - | chr8.4:20274812-20274831 | None:intergenic | 45.0% | |
| CGCGTGAGTTCGAATTAGAA+CGG | - | chr8.4:20274013-20274032 | None:intergenic | 45.0% | |
| CGTGAACAATGGCTATCTCA+AGG | + | chr8.4:20274098-20274117 | MS.gene43272:CDS | 45.0% | |
| CTTCAATTTCGCGGACCTAT+TGG | - | chr8.4:20274057-20274076 | None:intergenic | 45.0% | |
| GATGTCTGGATTCCAAACCA+GGG | + | chr8.4:20274681-20274700 | MS.gene43272:CDS | 45.0% | |
| GGATGAACCCGTTGTGAAAA+CGG | + | chr8.4:20274625-20274644 | MS.gene43272:CDS | 45.0% | |
| GTTCCTCGGACTTCCAATAA+TGG | + | chr8.4:20274716-20274735 | MS.gene43272:CDS | 45.0% | |
| GTTCTGTCAGCATGATCGAA+AGG | + | chr8.4:20275068-20275087 | MS.gene43272:CDS | 45.0% | |
| TTGCCATTATTGGAAGTCCG+AGG | - | chr8.4:20274722-20274741 | None:intergenic | 45.0% | |
| ! | ATGCCCAATCCACGTTTTGT+AGG | + | chr8.4:20274806-20274825 | MS.gene43272:CDS | 45.0% |
| ! | CAATCCACGTTTTGTAGGAG+GGG | + | chr8.4:20274811-20274830 | MS.gene43272:CDS | 45.0% |
| ! | CCAATCCACGTTTTGTAGGA+GGG | + | chr8.4:20274810-20274829 | MS.gene43272:CDS | 45.0% |
| ! | GTTACCCTCTTCTTTTTGCC+AGG | - | chr8.4:20273949-20273968 | None:intergenic | 45.0% |
| ! | TCTGTCTCTTTTGCCACAAG+AGG | + | chr8.4:20274936-20274955 | MS.gene43272:CDS | 45.0% |
| !! | AACAAAAAAAATTATATAAT+CGG | - | chr8.4:20273988-20274007 | None:intergenic | 5.0% |
| AATTGGAGAAAGTGGGGACG+AGG | + | chr8.4:20274285-20274304 | MS.gene43272:CDS | 50.0% | |
| ACAGAAGCAAGTGTGCATGG+AGG | + | chr8.4:20275022-20275041 | MS.gene43272:CDS | 50.0% | |
| ACAGATTGGGCAGAGTCTGA+GGG | - | chr8.4:20274772-20274791 | None:intergenic | 50.0% | |
| CATGAGGAGGAGGATGATGA+TGG | + | chr8.4:20274533-20274552 | MS.gene43272:CDS | 50.0% | |
| CCACAAGAGGATTCTTGAGC+AGG | + | chr8.4:20274949-20274968 | MS.gene43272:CDS | 50.0% | |
| CCCTCCTACAAAACGTGGAT+TGG | - | chr8.4:20274813-20274832 | None:intergenic | 50.0% | |
| CCTGCTCAAGAATCCTCTTG+TGG | - | chr8.4:20274952-20274971 | None:intergenic | 50.0% | |
| GAAGCATAGAGCCTCTTCAC+AGG | + | chr8.4:20274604-20274623 | MS.gene43272:CDS | 50.0% | |
| GAAGGGTTGCAAGGATGGAT+TGG | + | chr8.4:20274211-20274230 | MS.gene43272:CDS | 50.0% | |
| GAGACAGAAGCAAGTGTGCA+TGG | + | chr8.4:20275019-20275038 | MS.gene43272:CDS | 50.0% | |
| GATTCCGGGACGAATTTCAC+TGG | + | chr8.4:20274410-20274429 | MS.gene43272:CDS | 50.0% | |
| GGACTGATAGGACTGTTCGA+CGG | - | chr8.4:20274365-20274384 | None:intergenic | 50.0% | |
| GGATGTCTGGATTCCAAACC+AGG | + | chr8.4:20274680-20274699 | MS.gene43272:CDS | 50.0% | |
| GGTGAAGAAGAAGGGTTGCA+AGG | + | chr8.4:20274202-20274221 | MS.gene43272:CDS | 50.0% | |
| TCAGGTGCGGTGAAGAAGAA+GGG | + | chr8.4:20274194-20274213 | MS.gene43272:intron | 50.0% | |
| TCATATTGCTTCCTGCACCC+AGG | - | chr8.4:20274986-20275005 | None:intergenic | 50.0% | |
| TGGATGCTTGGATGATTGGG+AGG | + | chr8.4:20274553-20274572 | MS.gene43272:CDS | 50.0% | |
| TTCACTGGTAGTAGCAGTGG+TGG | + | chr8.4:20274425-20274444 | MS.gene43272:CDS | 50.0% | |
| TTCAGGTGCGGTGAAGAAGA+AGG | + | chr8.4:20274193-20274212 | MS.gene43272:intron | 50.0% | |
| TTGATGCGCGTCGTGAACAA+TGG | + | chr8.4:20274087-20274106 | MS.gene43272:CDS | 50.0% | |
| ! | AACGGGTTCATCCTGTGAAG+AGG | - | chr8.4:20274618-20274637 | None:intergenic | 50.0% |
| ! | ATGGAGGTAGCCTTACCCTT+CGG | + | chr8.4:20275038-20275057 | MS.gene43272:CDS | 50.0% |
| ! | CCCAATCCACGTTTTGTAGG+AGG | + | chr8.4:20274809-20274828 | MS.gene43272:CDS | 50.0% |
| !! | AGGATTCTTGGTGTTAGCGG+CGG | - | chr8.4:20273929-20273948 | None:intergenic | 50.0% |
| !! | AGTAGTGGTGGGTGTTTCTC+TGG | + | chr8.4:20274470-20274489 | MS.gene43272:CDS | 50.0% |
| !! | GCCAGGATTCTTGGTGTTAG+CGG | - | chr8.4:20273932-20273951 | None:intergenic | 50.0% |
| !! | GGAGGATGATGATGGATGCT+TGG | + | chr8.4:20274541-20274560 | MS.gene43272:CDS | 50.0% |
| !! | GTAGTGGTGGGTGTTTCTCT+GGG | + | chr8.4:20274471-20274490 | MS.gene43272:CDS | 50.0% |
| AACGAGCCAACCGAAGGGTA+AGG | - | chr8.4:20275051-20275070 | None:intergenic | 55.0% | |
| AGCAGGATGCTCGTTGTCCT+GGG | + | chr8.4:20274966-20274985 | MS.gene43272:CDS | 55.0% | |
| CGTTTGCTCTGTTTCCCCAC+CGG | - | chr8.4:20274263-20274282 | None:intergenic | 55.0% | |
| CTGGATTCCAAACCAGGGAG+TGG | + | chr8.4:20274686-20274705 | MS.gene43272:CDS | 55.0% | |
| CTTGGATGATTGGGAGGCTG+TGG | + | chr8.4:20274559-20274578 | MS.gene43272:CDS | 55.0% | |
| GACAGAACGAGCCAACCGAA+GGG | - | chr8.4:20275056-20275075 | None:intergenic | 55.0% | |
| GACAGATTGGGCAGAGTCTG+AGG | - | chr8.4:20274773-20274792 | None:intergenic | 55.0% | |
| GATTCCAAACCAGGGAGTGG+TGG | + | chr8.4:20274689-20274708 | MS.gene43272:CDS | 55.0% | |
| GCCGCTAACACCAAGAATCC+TGG | + | chr8.4:20273928-20273947 | MS.gene43272:CDS | 55.0% | |
| GGAACCCCTCCTACAAAACG+TGG | - | chr8.4:20274818-20274837 | None:intergenic | 55.0% | |
| GGCTCTATGCTTCTCATCGG+CGG | - | chr8.4:20274597-20274616 | None:intergenic | 55.0% | |
| GTGTTAGCGGCGGAAGGAAT+CGG | - | chr8.4:20273919-20273938 | None:intergenic | 55.0% | |
| TGACAGAACGAGCCAACCGA+AGG | - | chr8.4:20275057-20275076 | None:intergenic | 55.0% | |
| ! | AGGTAGCCTTACCCTTCGGT+TGG | + | chr8.4:20275042-20275061 | MS.gene43272:CDS | 55.0% |
| ! | CAAACCAGGGAGTGGTGGAA+CGG | + | chr8.4:20274694-20274713 | MS.gene43272:CDS | 55.0% |
| ! | GTTTTGTAGGAGGGGTTCCC+TGG | + | chr8.4:20274819-20274838 | MS.gene43272:CDS | 55.0% |
| !! | TTCTTGGTGTTAGCGGCGGA+AGG | - | chr8.4:20273925-20273944 | None:intergenic | 55.0% |
| AAAGTGGGGACGAGGCGTAG+AGG | + | chr8.4:20274293-20274312 | MS.gene43272:CDS | 60.0% | |
| AGCGGCGGAAGGAATCGGAA+CGG | - | chr8.4:20273914-20273933 | None:intergenic | 60.0% | |
| ATGCTCGTTGTCCTGGGTGC+AGG | + | chr8.4:20274972-20274991 | MS.gene43272:CDS | 60.0% | |
| CGTTCCACCACTCCCTGGTT+TGG | - | chr8.4:20274696-20274715 | None:intergenic | 60.0% | |
| GAGCAGGATGCTCGTTGTCC+TGG | + | chr8.4:20274965-20274984 | MS.gene43272:CDS | 60.0% | |
| GATTGGGCAGAGTCTGAGGG+CGG | - | chr8.4:20274769-20274788 | None:intergenic | 60.0% | |
| GGCACAGACATGCGAGACCA+GGG | - | chr8.4:20274839-20274858 | None:intergenic | 60.0% | |
| TGGCACAGACATGCGAGACC+AGG | - | chr8.4:20274840-20274859 | None:intergenic | 60.0% | |
| TGTTTCCCCACCGGTGACGA+CGG | - | chr8.4:20274254-20274273 | None:intergenic | 60.0% | |
| ! | GGAGTGGTGGAACGGTTCCT+CGG | + | chr8.4:20274702-20274721 | MS.gene43272:CDS | 60.0% |
| GACGAGGCGTAGAGGTGGAG+AGG | + | chr8.4:20274301-20274320 | MS.gene43272:CDS | 65.0% | |
| GGAACCGTTCCACCACTCCC+TGG | - | chr8.4:20274701-20274720 | None:intergenic | 65.0% | |
| GGCGGAAGGAATCGGAACGG+CGG | - | chr8.4:20273911-20273930 | None:intergenic | 65.0% | |
| TGTCCACGTGCCGTCGTCAC+CGG | + | chr8.4:20274241-20274260 | MS.gene43272:CDS | 65.0% | |
| ACGTGCCGTCGTCACCGGTG+GGG | + | chr8.4:20274246-20274265 | MS.gene43272:CDS | 70.0% | |
| CACGTGCCGTCGTCACCGGT+GGG | + | chr8.4:20274245-20274264 | MS.gene43272:CDS | 70.0% | |
| GTGGGGACGAGGCGTAGAGG+TGG | + | chr8.4:20274296-20274315 | MS.gene43272:CDS | 70.0% | |
| CCACCGGTGACGACGGCACG+TGG | - | chr8.4:20274247-20274266 | None:intergenic | 75.0% | |
| CCACGTGCCGTCGTCACCGG+TGG | + | chr8.4:20274244-20274263 | MS.gene43272:CDS | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8.4 | gene | 20273889 | 20275096 | 20273889 | ID=MS.gene43272 |
| chr8.4 | mRNA | 20273889 | 20275096 | 20273889 | ID=MS.gene43272.t1;Parent=MS.gene43272 |
| chr8.4 | exon | 20273889 | 20273963 | 20273889 | ID=MS.gene43272.t1.exon1;Parent=MS.gene43272.t1 |
| chr8.4 | CDS | 20273889 | 20273963 | 20273889 | ID=cds.MS.gene43272.t1;Parent=MS.gene43272.t1 |
| chr8.4 | exon | 20274053 | 20274119 | 20274053 | ID=MS.gene43272.t1.exon2;Parent=MS.gene43272.t1 |
| chr8.4 | CDS | 20274053 | 20274119 | 20274053 | ID=cds.MS.gene43272.t1;Parent=MS.gene43272.t1 |
| chr8.4 | exon | 20274198 | 20275096 | 20274198 | ID=MS.gene43272.t1.exon3;Parent=MS.gene43272.t1 |
| chr8.4 | CDS | 20274198 | 20275096 | 20274198 | ID=cds.MS.gene43272.t1;Parent=MS.gene43272.t1 |
| Gene Sequence |
| Protein sequence |
