Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene033203.t1 | XP_003608937.2 | 93 | 215 | 4 | 2 | 1 | 204 | 1 | 215 | 2.20E-99 | 371.7 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene033203.t1 | Q9SB04 | 63.0 | 173 | 51 | 4 | 6 | 166 | 3 | 174 | 6.7e-49 | 195.3 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene033203.t1 | G7JNT1 | 93.0 | 215 | 4 | 2 | 1 | 204 | 1 | 215 | 1.6e-99 | 371.7 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene033203.t1 | TR | Others |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene065401 | MS.gene033203 | PPI |
| MS.gene051416 | MS.gene033203 | PPI |
| MS.gene065402 | MS.gene033203 | PPI |
| MS.gene029745 | MS.gene033203 | PPI |
| MS.gene47429 | MS.gene033203 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene033203.t1 | MTR_4g106590 | 93.023 | 215 | 4 | 2 | 1 | 204 | 1 | 215 | 4.03e-139 | 387 |
| MS.gene033203.t1 | MTR_3g078613 | 67.757 | 214 | 46 | 6 | 1 | 204 | 1 | 201 | 7.15e-89 | 259 |
| MS.gene033203.t1 | MTR_3g078613 | 67.290 | 214 | 46 | 7 | 1 | 204 | 1 | 200 | 5.42e-86 | 252 |
| MS.gene033203.t1 | MTR_5g036480 | 65.278 | 144 | 36 | 3 | 25 | 155 | 15 | 157 | 3.08e-53 | 171 |
| MS.gene033203.t1 | MTR_1g049100 | 63.830 | 141 | 39 | 3 | 21 | 150 | 3 | 142 | 3.12e-52 | 167 |
| MS.gene033203.t1 | MTR_7g490310 | 50.920 | 163 | 61 | 4 | 21 | 165 | 4 | 165 | 2.61e-47 | 155 |
| MS.gene033203.t1 | MTR_8g038620 | 50.898 | 167 | 62 | 4 | 21 | 169 | 4 | 168 | 2.84e-46 | 150 |
| MS.gene033203.t1 | MTR_3g093860 | 52.632 | 133 | 49 | 3 | 27 | 147 | 19 | 149 | 6.61e-40 | 134 |
| MS.gene033203.t1 | MTR_3g015490 | 45.238 | 168 | 62 | 5 | 24 | 169 | 2 | 161 | 1.03e-35 | 123 |
| MS.gene033203.t1 | MTR_3g088630 | 45.333 | 150 | 53 | 4 | 25 | 147 | 21 | 168 | 1.40e-35 | 125 |
| MS.gene033203.t1 | MTR_6g007460 | 37.879 | 198 | 62 | 3 | 16 | 152 | 1 | 198 | 9.23e-32 | 114 |
| MS.gene033203.t1 | MTR_4g051330 | 49.351 | 77 | 39 | 0 | 93 | 169 | 74 | 150 | 1.19e-18 | 79.3 |
| MS.gene033203.t1 | MTR_8g024260 | 27.891 | 147 | 89 | 4 | 6 | 150 | 28 | 159 | 2.11e-11 | 62.8 |
| MS.gene033203.t1 | MTR_3g092780 | 27.184 | 103 | 74 | 1 | 72 | 174 | 102 | 203 | 2.17e-11 | 62.8 |
| MS.gene033203.t1 | MTR_3g092780 | 27.184 | 103 | 74 | 1 | 72 | 174 | 102 | 203 | 2.20e-11 | 62.8 |
| MS.gene033203.t1 | MTR_3g092780 | 34.211 | 76 | 49 | 1 | 72 | 147 | 102 | 176 | 6.02e-11 | 61.2 |
| MS.gene033203.t1 | MTR_3g092780 | 34.211 | 76 | 49 | 1 | 72 | 147 | 102 | 176 | 6.22e-11 | 61.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene033203.t1 | AT3G48100 | 61.453 | 179 | 56 | 4 | 5 | 171 | 2 | 179 | 8.42e-66 | 201 |
| MS.gene033203.t1 | AT5G62920 | 67.974 | 153 | 39 | 2 | 26 | 169 | 25 | 176 | 2.20e-62 | 192 |
| MS.gene033203.t1 | AT1G74890 | 66.443 | 149 | 37 | 4 | 25 | 161 | 17 | 164 | 3.59e-58 | 182 |
| MS.gene033203.t1 | AT1G59940 | 54.000 | 200 | 72 | 5 | 16 | 197 | 23 | 220 | 1.36e-57 | 181 |
| MS.gene033203.t1 | AT1G19050 | 57.895 | 171 | 46 | 5 | 3 | 158 | 2 | 161 | 1.35e-56 | 178 |
| MS.gene033203.t1 | AT1G10470 | 66.667 | 141 | 37 | 2 | 16 | 147 | 10 | 149 | 2.18e-56 | 179 |
| MS.gene033203.t1 | AT1G59940 | 54.000 | 200 | 72 | 5 | 16 | 197 | 115 | 312 | 3.21e-56 | 181 |
| MS.gene033203.t1 | AT1G10470 | 66.667 | 141 | 37 | 2 | 16 | 147 | 24 | 163 | 4.04e-56 | 179 |
| MS.gene033203.t1 | AT2G40670 | 55.556 | 135 | 48 | 2 | 25 | 147 | 28 | 162 | 4.73e-46 | 150 |
| MS.gene033203.t1 | AT3G57040 | 54.305 | 151 | 49 | 4 | 21 | 152 | 4 | 153 | 1.88e-45 | 150 |
| MS.gene033203.t1 | AT3G57040 | 54.305 | 151 | 49 | 4 | 21 | 152 | 4 | 153 | 1.88e-45 | 150 |
| MS.gene033203.t1 | AT3G56380 | 55.639 | 133 | 49 | 2 | 25 | 147 | 19 | 151 | 2.47e-45 | 147 |
| MS.gene033203.t1 | AT2G41310 | 55.172 | 145 | 47 | 3 | 24 | 151 | 7 | 150 | 3.46e-45 | 149 |
| MS.gene033203.t1 | AT2G40670 | 54.815 | 135 | 48 | 3 | 25 | 147 | 28 | 161 | 2.88e-43 | 142 |
| MS.gene033203.t1 | AT3G56380 | 54.887 | 133 | 49 | 3 | 25 | 147 | 19 | 150 | 1.51e-42 | 140 |
| MS.gene033203.t1 | AT1G10470 | 62.667 | 75 | 27 | 1 | 85 | 158 | 25 | 99 | 5.59e-24 | 94.0 |
| MS.gene033203.t1 | AT2G07440 | 58.730 | 63 | 26 | 0 | 89 | 151 | 2 | 64 | 1.76e-17 | 75.9 |
| MS.gene033203.t1 | AT1G67710 | 30.128 | 156 | 84 | 6 | 16 | 159 | 1 | 143 | 2.55e-11 | 62.4 |
| MS.gene033203.t1 | AT5G24470 | 32.911 | 79 | 52 | 1 | 72 | 150 | 96 | 173 | 3.66e-11 | 62.0 |
Find 36 sgRNAs with CRISPR-Local
Find 117 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTCTCATGATAAAATCTTTC+AGG | 0.209124 | 8.3:+16649431 | None:intergenic |
| TCATAATCTTGATTTCTTAG+AGG | 0.316444 | 8.3:+16649258 | None:intergenic |
| GTCGAATTTGACGGAGTTGA+TGG | 0.327382 | 8.3:-16651113 | MS.gene033203:CDS |
| TTCACTAATTTGCAGGTGTT+TGG | 0.354372 | 8.3:-16649509 | MS.gene033203:intron |
| TTCTTAGAGGATAATGTTGA+TGG | 0.406515 | 8.3:+16649271 | None:intergenic |
| TTGATGGAGGAATCACCTTC+AGG | 0.454395 | 8.3:-16651097 | MS.gene033203:CDS |
| TATTCCATGCCGGGGATGAC+AGG | 0.470500 | 8.3:-16650655 | MS.gene033203:CDS |
| CTTACATCTGACAATTTGAC+TGG | 0.476820 | 8.3:+16649457 | None:intergenic |
| ATGACGGATTATTCCATGCC+GGG | 0.493470 | 8.3:-16650664 | MS.gene033203:CDS |
| CAGTTTGCTATGGCTGCCGC+CGG | 0.493752 | 8.3:-16651148 | None:intergenic |
| GATGGAGAGAACAGTGATGT+TGG | 0.500241 | 8.3:-16650812 | MS.gene033203:CDS |
| GAGGAATCACCTTCAGGTGC+AGG | 0.503243 | 8.3:-16651091 | MS.gene033203:CDS |
| GAAGGTTAATTTGATAATGA+CGG | 0.519870 | 8.3:-16650680 | MS.gene033203:CDS |
| ACTAATTTGCAGGTGTTTGG+AGG | 0.520826 | 8.3:-16649506 | MS.gene033203:intron |
| ATTTGCAGGTGTTTGGAGGA+AGG | 0.521653 | 8.3:-16649502 | MS.gene033203:intron |
| TGAATTACTCAAGAAAATCA+AGG | 0.543151 | 8.3:-16650629 | MS.gene033203:intron |
| AATTCATATCCTGTCATCCC+CGG | 0.556181 | 8.3:+16650646 | None:intergenic |
| TCCGACGACATGATCACCAC+TGG | 0.559021 | 8.3:+16650436 | None:intergenic |
| GTGTTTGGAGGAAGGAGCAG+AGG | 0.569038 | 8.3:-16649494 | MS.gene033203:CDS |
| ATATCCTGTCATCCCCGGCA+TGG | 0.579959 | 8.3:+16650651 | None:intergenic |
| GATAATGTTGATGGCGAGAG+TGG | 0.585842 | 8.3:+16649280 | None:intergenic |
| GTTATGGTGGCAGGGTGTGA+AGG | 0.590843 | 8.3:-16650698 | MS.gene033203:intron |
| TCAACTCCGTCAAATTCGAC+CGG | 0.594767 | 8.3:+16651116 | None:intergenic |
| TCCAGTGGTGATCATGTCGT+CGG | 0.595178 | 8.3:-16650437 | MS.gene033203:CDS |
| TGCAATTCACCTGCACCTGA+AGG | 0.595358 | 8.3:+16651082 | None:intergenic |
| AATGACGGATTATTCCATGC+CGG | 0.601249 | 8.3:-16650665 | MS.gene033203:CDS |
| TATCATGAGAGGTGAAGTGA+AGG | 0.611120 | 8.3:-16649419 | MS.gene033203:CDS |
| ATGAGAGGTGAAGTGAAGGA+TGG | 0.617352 | 8.3:-16649415 | MS.gene033203:CDS |
| GGATCACATGAATGACGCAT+TGG | 0.617664 | 8.3:+16649322 | None:intergenic |
| ATTCGACCGGAAAATCTCGC+CGG | 0.617787 | 8.3:+16651129 | None:intergenic |
| GAATTTGACGGAGTTGATGG+AGG | 0.621403 | 8.3:-16651110 | MS.gene033203:CDS |
| GAGAATGTAGTTGATAGAGA+TGG | 0.621435 | 8.3:+16649346 | None:intergenic |
| TGACGGATTATTCCATGCCG+GGG | 0.653217 | 8.3:-16650663 | MS.gene033203:CDS |
| CGACCGGAAAATCTCGCCGG+CGG | 0.669618 | 8.3:+16651132 | None:intergenic |
| GGTGAGAACACTGACGATGG+TGG | 0.724751 | 8.3:+16649301 | None:intergenic |
| AGTGGTGAGAACACTGACGA+TGG | 0.780723 | 8.3:+16649298 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TATTTTATTTTTTATTTTAT+TGG | - | chr8.3:16650478-16650497 | MS.gene033203:intron | 0.0% |
| !! | AATAAAAAGAAACAAATAAA+AGG | - | chr8.3:16650607-16650626 | MS.gene033203:intron | 10.0% |
| !!! | TTTGTTTCTTTTTATTTTTT+TGG | + | chr8.3:16650603-16650622 | None:intergenic | 10.0% |
| !! | AAACAAATAAAAGGAATATT+TGG | - | chr8.3:16650616-16650635 | MS.gene033203:intron | 15.0% |
| !! | ATATGTACATTTGTATTATA+TGG | - | chr8.3:16650726-16650745 | MS.gene033203:intron | 15.0% |
| !!! | ATTGATTTTGAAAATGTTTT+TGG | - | chr8.3:16649496-16649515 | MS.gene033203:CDS | 15.0% |
| !!! | ATTTTGAAATTTTATATTGG+AGG | - | chr8.3:16649868-16649887 | MS.gene033203:intron | 15.0% |
| !! | AAATAAAACTATTAAGAAGC+AGG | + | chr8.3:16650869-16650888 | None:intergenic | 20.0% |
| !! | AACTATCAACAATTCAAATA+AGG | + | chr8.3:16649826-16649845 | None:intergenic | 20.0% |
| !! | CAAGGTGATTAATTAATTAT+TGG | - | chr8.3:16649786-16649805 | MS.gene033203:intron | 20.0% |
| !!! | ACAAATGTACATATTCTTTT+GGG | + | chr8.3:16650720-16650739 | None:intergenic | 20.0% |
| !!! | TACAAATGTACATATTCTTT+TGG | + | chr8.3:16650721-16650740 | None:intergenic | 20.0% |
| !!! | TTATTTGTTAACACTAAGAA+CGG | - | chr8.3:16650285-16650304 | MS.gene033203:intron | 20.0% |
| !!! | TTTGTTTTTTGTTTCAGTTA+CGG | - | chr8.3:16649521-16649540 | MS.gene033203:intron | 20.0% |
| !!! | TTTTATTTTCACTAATTTGC+AGG | - | chr8.3:16650881-16650900 | MS.gene033203:intron | 20.0% |
| ! | ACAAATAAACTTAAGTAGCA+TGG | + | chr8.3:16650273-16650292 | None:intergenic | 25.0% |
| ! | ATGTAAGCAAATTATGTTTC+TGG | - | chr8.3:16649613-16649632 | MS.gene033203:intron | 25.0% |
| ! | CAGATTAGATGCATATTTAT+GGG | + | chr8.3:16650151-16650170 | None:intergenic | 25.0% |
| ! | GAATTTATTTCCTGATTAAG+TGG | + | chr8.3:16650174-16650193 | None:intergenic | 25.0% |
| ! | TCATAATCTTGATTTCTTAG+AGG | + | chr8.3:16651142-16651161 | None:intergenic | 25.0% |
| ! | TGAATTACTCAAGAAAATCA+AGG | - | chr8.3:16649768-16649787 | MS.gene033203:intron | 25.0% |
| !! | ATATTTGGCAAGAATCTTTT+AGG | - | chr8.3:16650631-16650650 | MS.gene033203:CDS | 25.0% |
| !! | ATGTTTTCATACGATTGATA+AGG | + | chr8.3:16650544-16650563 | None:intergenic | 25.0% |
| !! | TGAAATTTTATATTGGAGGA+AGG | - | chr8.3:16649872-16649891 | MS.gene033203:intron | 25.0% |
| !! | TGATTCAAGTTAAAAGAGTT+GGG | + | chr8.3:16650449-16650468 | None:intergenic | 25.0% |
| !!! | GAAGGTTAATTTGATAATGA+CGG | - | chr8.3:16649717-16649736 | MS.gene033203:intron | 25.0% |
| !!! | GTTGTTGTTTTGTTATGTTA+TGG | - | chr8.3:16649683-16649702 | MS.gene033203:intron | 25.0% |
| ACATTAACTTTCTATGCTGT+GGG | - | chr8.3:16650826-16650845 | MS.gene033203:CDS | 30.0% | |
| ACTTTGCTTGGATGTTAATT+TGG | - | chr8.3:16649643-16649662 | MS.gene033203:intron | 30.0% | |
| ATGTAATTGTAATTGCCACA+CGG | - | chr8.3:16650675-16650694 | MS.gene033203:CDS | 30.0% | |
| ATTACAATTACATCGGTAGA+AGG | + | chr8.3:16650668-16650687 | None:intergenic | 30.0% | |
| CTCTCATGATAAAATCTTTC+AGG | + | chr8.3:16650969-16650988 | None:intergenic | 30.0% | |
| GAAATCTGGAGAACTTAATT+TGG | + | chr8.3:16650418-16650437 | None:intergenic | 30.0% | |
| GCAGATTAGATGCATATTTA+TGG | + | chr8.3:16650152-16650171 | None:intergenic | 30.0% | |
| TCTGGATTATTAACTTTGCT+TGG | - | chr8.3:16649631-16649650 | MS.gene033203:intron | 30.0% | |
| TGGTGAATAACATGTGTATT+TGG | - | chr8.3:16650057-16650076 | MS.gene033203:intron | 30.0% | |
| TGTGGCAATTACAATTACAT+CGG | + | chr8.3:16650675-16650694 | None:intergenic | 30.0% | |
| TGTTTCAAATCACTCAGATA+GGG | - | chr8.3:16650347-16650366 | MS.gene033203:intron | 30.0% | |
| TTATGCCTCCATATCTATTT+GGG | + | chr8.3:16650208-16650227 | None:intergenic | 30.0% | |
| TTCTTAGAGGATAATGTTGA+TGG | + | chr8.3:16651129-16651148 | None:intergenic | 30.0% | |
| TTGAAGATTTCTTCATGCAA+AGG | - | chr8.3:16649390-16649409 | MS.gene033203:CDS | 30.0% | |
| TTGGAACTCGAATAAGTTTA+TGG | - | chr8.3:16650497-16650516 | MS.gene033203:intron | 30.0% | |
| ! | AATTTTATATTGGAGGAAGG+TGG | - | chr8.3:16649875-16649894 | MS.gene033203:intron | 30.0% |
| ! | CTGAAAGATTTTATCATGAG+AGG | - | chr8.3:16650967-16650986 | MS.gene033203:intron | 30.0% |
| ! | CTGATTCAAGTTAAAAGAGT+TGG | + | chr8.3:16650450-16650469 | None:intergenic | 30.0% |
| ! | TGTATTATATGGAGTGCTTT+AGG | - | chr8.3:16650737-16650756 | MS.gene033203:intron | 30.0% |
| !! | CTTTTGATTCTAGTGTGATT+TGG | - | chr8.3:16650033-16650052 | MS.gene033203:intron | 30.0% |
| !! | GTTGTTTTGTTATGTTATGG+TGG | - | chr8.3:16649686-16649705 | MS.gene033203:intron | 30.0% |
| !! | TATGGTGTTATTTGTTTCCT+TGG | - | chr8.3:16650515-16650534 | MS.gene033203:intron | 30.0% |
| !!! | ATGTTTTGACTCGAATTGAT+AGG | - | chr8.3:16649986-16650005 | MS.gene033203:intron | 30.0% |
| AAACTATTAAGAAGCAGGAC+AGG | + | chr8.3:16650864-16650883 | None:intergenic | 35.0% | |
| ACACCAGATTAGAATTCAGT+AGG | + | chr8.3:16650115-16650134 | None:intergenic | 35.0% | |
| CAATAATATGTAGAACCGTG+TGG | + | chr8.3:16650693-16650712 | None:intergenic | 35.0% | |
| CACATTAACTTTCTATGCTG+TGG | - | chr8.3:16650825-16650844 | MS.gene033203:CDS | 35.0% | |
| CTGCTGAAATTAACACAAAC+AGG | + | chr8.3:16649917-16649936 | None:intergenic | 35.0% | |
| CTGTTTGTGTTAATTTCAGC+AGG | - | chr8.3:16649915-16649934 | MS.gene033203:intron | 35.0% | |
| CTTACATCTGACAATTTGAC+TGG | + | chr8.3:16650943-16650962 | None:intergenic | 35.0% | |
| CTTATGCCTCCATATCTATT+TGG | + | chr8.3:16650209-16650228 | None:intergenic | 35.0% | |
| GTGTAGATCCCAAATAGATA+TGG | - | chr8.3:16650197-16650216 | MS.gene033203:intron | 35.0% | |
| GTGTTTCAAATCACTCAGAT+AGG | - | chr8.3:16650346-16650365 | MS.gene033203:intron | 35.0% | |
| GTTCCTACTGAATTCTAATC+TGG | - | chr8.3:16650109-16650128 | MS.gene033203:intron | 35.0% | |
| TAGATCCCAAATAGATATGG+AGG | - | chr8.3:16650200-16650219 | MS.gene033203:intron | 35.0% | |
| TTAAAAGAGTTGGGTCTTCA+GGG | + | chr8.3:16650440-16650459 | None:intergenic | 35.0% | |
| TTTAACTGTTGAAGCTCCAT+AGG | - | chr8.3:16650236-16650255 | MS.gene033203:intron | 35.0% | |
| ! | AAGAAGAGCTCTTCAGTTTT+TGG | - | chr8.3:16649557-16649576 | MS.gene033203:intron | 35.0% |
| ! | AGAAGAGCTCTTCAGTTTTT+GGG | - | chr8.3:16649558-16649577 | MS.gene033203:intron | 35.0% |
| ! | ATCTAATCTGCCACTTAATC+AGG | - | chr8.3:16650161-16650180 | MS.gene033203:intron | 35.0% |
| ! | TGATTCTAGTGTGATTTGGA+TGG | - | chr8.3:16650037-16650056 | MS.gene033203:intron | 35.0% |
| ! | TTCACTAATTTGCAGGTGTT+TGG | - | chr8.3:16650888-16650907 | MS.gene033203:intron | 35.0% |
| ! | TTTGTTATGTTATGGTGGCA+GGG | - | chr8.3:16649691-16649710 | MS.gene033203:intron | 35.0% |
| !! | GAGAATGTAGTTGATAGAGA+TGG | + | chr8.3:16651054-16651073 | None:intergenic | 35.0% |
| !! | TTTTGTTATGTTATGGTGGC+AGG | - | chr8.3:16649690-16649709 | MS.gene033203:intron | 35.0% |
| AATTCATATCCTGTCATCCC+CGG | + | chr8.3:16649754-16649773 | None:intergenic | 40.0% | |
| GTTAAAAGAGTTGGGTCTTC+AGG | + | chr8.3:16650441-16650460 | None:intergenic | 40.0% | |
| TACGATTGATAAGGTTGCCA+AGG | + | chr8.3:16650535-16650554 | None:intergenic | 40.0% | |
| TATCATGAGAGGTGAAGTGA+AGG | - | chr8.3:16650978-16650997 | MS.gene033203:intron | 40.0% | |
| TGAAGTGATTGTAGAGATGC+AGG | - | chr8.3:16650309-16650328 | MS.gene033203:intron | 40.0% | |
| TGTCGAAAGTTGTTCTTGCT+AGG | + | chr8.3:16650807-16650826 | None:intergenic | 40.0% | |
| TTAACTTTCTATGCTGTGGG+TGG | - | chr8.3:16650829-16650848 | MS.gene033203:CDS | 40.0% | |
| ! | ACTAATTTGCAGGTGTTTGG+AGG | - | chr8.3:16650891-16650910 | MS.gene033203:intron | 40.0% |
| ! | GATTTTCCGGTCGAATTTGA+CGG | - | chr8.3:16649275-16649294 | MS.gene033203:CDS | 40.0% |
| !! | AATGACGGATTATTCCATGC+CGG | - | chr8.3:16649732-16649751 | MS.gene033203:intron | 40.0% |
| !! | AGCAGGAGTCTTCTGTTTTT+AGG | - | chr8.3:16649932-16649951 | MS.gene033203:intron | 40.0% |
| !!! | AGCTCTTCAGTTTTTGGGAT+TGG | - | chr8.3:16649563-16649582 | MS.gene033203:intron | 40.0% |
| !!! | CTTCAGTTTTTGGGATTGGA+TGG | - | chr8.3:16649567-16649586 | MS.gene033203:intron | 40.0% |
| !!! | GCAGGAGTCTTCTGTTTTTA+GGG | - | chr8.3:16649933-16649952 | MS.gene033203:intron | 40.0% |
| !!! | TGTTTTTAGGGAGATTCCAG+TGG | - | chr8.3:16649945-16649964 | MS.gene033203:intron | 40.0% |
| AGAAGCAGGACAGGATATAC+TGG | + | chr8.3:16650855-16650874 | None:intergenic | 45.0% | |
| ATGAGAGGTGAAGTGAAGGA+TGG | - | chr8.3:16650982-16651001 | MS.gene033203:intron | 45.0% | |
| ATTTGCAGGTGTTTGGAGGA+AGG | - | chr8.3:16650895-16650914 | MS.gene033203:intron | 45.0% | |
| CATGGCAAACACAGATCCTA+TGG | + | chr8.3:16650255-16650274 | None:intergenic | 45.0% | |
| GATGGAGAGAACAGTGATGT+TGG | - | chr8.3:16649585-16649604 | MS.gene033203:intron | 45.0% | |
| GGATCACATGAATGACGCAT+TGG | + | chr8.3:16651078-16651097 | None:intergenic | 45.0% | |
| GTCGAATTTGACGGAGTTGA+TGG | - | chr8.3:16649284-16649303 | MS.gene033203:CDS | 45.0% | |
| TCAACTCCGTCAAATTCGAC+CGG | + | chr8.3:16649284-16649303 | None:intergenic | 45.0% | |
| TTGATGGAGGAATCACCTTC+AGG | - | chr8.3:16649300-16649319 | MS.gene033203:CDS | 45.0% | |
| ! | TGGCAAGAATCTTTTAGGCC+TGG | - | chr8.3:16650636-16650655 | MS.gene033203:CDS | 45.0% |
| !! | ATGACGGATTATTCCATGCC+GGG | - | chr8.3:16649733-16649752 | MS.gene033203:intron | 45.0% |
| !! | GAATTTGACGGAGTTGATGG+AGG | - | chr8.3:16649287-16649306 | MS.gene033203:CDS | 45.0% |
| !! | GATAATGTTGATGGCGAGAG+TGG | + | chr8.3:16651120-16651139 | None:intergenic | 45.0% |
| !!! | TTTATTTTGAAATTTTATAT+TGG | - | chr8.3:16649865-16649884 | MS.gene033203:intron | 5.0% |
| AGTGGTGAGAACACTGACGA+TGG | + | chr8.3:16651102-16651121 | None:intergenic | 50.0% | |
| ATTCGACCGGAAAATCTCGC+CGG | + | chr8.3:16649271-16649290 | None:intergenic | 50.0% | |
| GTTGGGTCTTCAGGGAAATC+TGG | + | chr8.3:16650432-16650451 | None:intergenic | 50.0% | |
| TCCAGTGGTGATCATGTCGT+CGG | - | chr8.3:16649960-16649979 | MS.gene033203:intron | 50.0% | |
| TGCAATTCACCTGCACCTGA+AGG | + | chr8.3:16649318-16649337 | None:intergenic | 50.0% | |
| !! | TGACGGATTATTCCATGCCG+GGG | - | chr8.3:16649734-16649753 | MS.gene033203:intron | 50.0% |
| ATATCCTGTCATCCCCGGCA+TGG | + | chr8.3:16649749-16649768 | None:intergenic | 55.0% | |
| ATCGGTAGAAGGTTGCTGCC+AGG | + | chr8.3:16650657-16650676 | None:intergenic | 55.0% | |
| GAGGAATCACCTTCAGGTGC+AGG | - | chr8.3:16649306-16649325 | MS.gene033203:CDS | 55.0% | |
| GGTGAGAACACTGACGATGG+TGG | + | chr8.3:16651099-16651118 | None:intergenic | 55.0% | |
| GTGTTTGGAGGAAGGAGCAG+AGG | - | chr8.3:16650903-16650922 | MS.gene033203:intron | 55.0% | |
| GTTATGGTGGCAGGGTGTGA+AGG | - | chr8.3:16649699-16649718 | MS.gene033203:intron | 55.0% | |
| TATTCCATGCCGGGGATGAC+AGG | - | chr8.3:16649742-16649761 | MS.gene033203:intron | 55.0% | |
| TCCGACGACATGATCACCAC+TGG | + | chr8.3:16649964-16649983 | None:intergenic | 55.0% | |
| CGACCGGAAAATCTCGCCGG+CGG | + | chr8.3:16649268-16649287 | None:intergenic | 65.0% | |
| ! | CTGCCGCCGGCGAGATTTTC+CGG | - | chr8.3:16649262-16649281 | MS.gene033203:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8.3 | gene | 16649258 | 16651161 | 16649258 | ID=MS.gene033203 |
| chr8.3 | mRNA | 16649258 | 16651161 | 16649258 | ID=MS.gene033203.t1;Parent=MS.gene033203 |
| chr8.3 | exon | 16651035 | 16651161 | 16651035 | ID=MS.gene033203.t1.exon1;Parent=MS.gene033203.t1 |
| chr8.3 | CDS | 16651035 | 16651161 | 16651035 | ID=cds.MS.gene033203.t1;Parent=MS.gene033203.t1 |
| chr8.3 | exon | 16650805 | 16650881 | 16650805 | ID=MS.gene033203.t1.exon2;Parent=MS.gene033203.t1 |
| chr8.3 | CDS | 16650805 | 16650881 | 16650805 | ID=cds.MS.gene033203.t1;Parent=MS.gene033203.t1 |
| chr8.3 | exon | 16650630 | 16650707 | 16650630 | ID=MS.gene033203.t1.exon3;Parent=MS.gene033203.t1 |
| chr8.3 | CDS | 16650630 | 16650707 | 16650630 | ID=cds.MS.gene033203.t1;Parent=MS.gene033203.t1 |
| chr8.3 | exon | 16650412 | 16650485 | 16650412 | ID=MS.gene033203.t1.exon4;Parent=MS.gene033203.t1 |
| chr8.3 | CDS | 16650412 | 16650485 | 16650412 | ID=cds.MS.gene033203.t1;Parent=MS.gene033203.t1 |
| chr8.3 | exon | 16649258 | 16649516 | 16649258 | ID=MS.gene033203.t1.exon5;Parent=MS.gene033203.t1 |
| chr8.3 | CDS | 16649258 | 16649516 | 16649258 | ID=cds.MS.gene033203.t1;Parent=MS.gene033203.t1 |
| Gene Sequence |
| Protein sequence |
