Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene033605.t1 | XP_003624347.1 | 91.8 | 255 | 14 | 4 | 1 | 252 | 1 | 251 | 2.60E-126 | 461.5 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene033605.t1 | Q9LF14 | 76.5 | 204 | 48 | 0 | 49 | 252 | 37 | 240 | 2.1e-92 | 340.1 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene033605.t1 | G7KUB5 | 91.8 | 255 | 14 | 4 | 1 | 252 | 1 | 251 | 1.9e-126 | 461.5 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene033605 | MS.gene023541 | PPI |
| MS.gene78610 | MS.gene033605 | PPI |
| MS.gene033605 | MS.gene09080 | PPI |
| MS.gene033605 | MS.gene53154 | PPI |
| MS.gene08762 | MS.gene033605 | PPI |
| MS.gene55353 | MS.gene033605 | PPI |
| MS.gene85927 | MS.gene033605 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene033605.t1 | MTR_7g082240 | 91.765 | 255 | 14 | 4 | 1 | 252 | 1 | 251 | 1.43e-167 | 463 |
| MS.gene033605.t1 | MTR_8g095500 | 89.451 | 237 | 17 | 3 | 16 | 252 | 15 | 243 | 7.00e-151 | 420 |
| MS.gene033605.t1 | MTR_8g085910 | 59.694 | 196 | 79 | 0 | 57 | 252 | 17 | 212 | 1.36e-84 | 251 |
| MS.gene033605.t1 | MTR_8g103890 | 51.759 | 199 | 96 | 0 | 50 | 248 | 57 | 255 | 4.19e-76 | 231 |
| MS.gene033605.t1 | MTR_8g103890 | 58.571 | 140 | 58 | 0 | 50 | 189 | 57 | 196 | 8.08e-59 | 185 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene033605.t1 | AT5G16140 | 65.060 | 249 | 77 | 1 | 4 | 252 | 2 | 240 | 3.42e-119 | 340 |
| MS.gene033605.t1 | AT5G16140 | 65.060 | 249 | 77 | 1 | 4 | 252 | 2 | 240 | 3.42e-119 | 340 |
| MS.gene033605.t1 | AT5G38290 | 64.659 | 249 | 84 | 2 | 4 | 252 | 6 | 250 | 5.02e-117 | 335 |
| MS.gene033605.t1 | AT5G38290 | 64.659 | 249 | 84 | 2 | 4 | 252 | 2 | 246 | 5.32e-117 | 335 |
| MS.gene033605.t1 | AT5G19830 | 57.868 | 197 | 83 | 0 | 55 | 251 | 16 | 212 | 5.01e-82 | 245 |
| MS.gene033605.t1 | AT1G18440 | 56.452 | 186 | 81 | 0 | 57 | 242 | 94 | 279 | 2.28e-79 | 241 |
| MS.gene033605.t1 | AT1G18440 | 62.857 | 105 | 39 | 0 | 57 | 161 | 94 | 198 | 5.50e-46 | 153 |
Find 60 sgRNAs with CRISPR-Local
Find 155 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CGGAAACCCTCCTGGAACTA+TGG | 0.238093 | 7.4:+24491735 | MS.gene033605:CDS |
| ATAATGAAAGTTCCTTCTTC+TGG | 0.257421 | 7.4:-24489835 | None:intergenic |
| CATGTCAATAGATTCAATTT+AGG | 0.292948 | 7.4:+24492257 | MS.gene033605:CDS |
| ATGTCAATAGATTCAATTTA+GGG | 0.304320 | 7.4:+24492258 | MS.gene033605:CDS |
| GTGCCATGGTATTTATTTCC+AGG | 0.314037 | 7.4:-24489981 | None:intergenic |
| TCCTTGGCTTGTTGTTGGCT+TGG | 0.320294 | 7.4:+24489953 | MS.gene033605:CDS |
| TTGATATGTACAGGTTCTAT+AGG | 0.328169 | 7.4:+24490428 | MS.gene033605:intron |
| TGATGCCCATGTCCACCTTT+AGG | 0.328247 | 7.4:-24490875 | None:intergenic |
| CCTTGGCTTGTTGTTGGCTT+GGG | 0.334876 | 7.4:+24489954 | MS.gene033605:CDS |
| CAATGGAGATACTAATAAAC+TGG | 0.343383 | 7.4:+24489923 | MS.gene033605:CDS |
| CTAAAATTCATGTATGTTTG+AGG | 0.385508 | 7.4:-24490476 | None:intergenic |
| GCTCTTAAATCCATAGTTCC+AGG | 0.394847 | 7.4:-24491745 | None:intergenic |
| TATACTCCTTGGCTTGTTGT+TGG | 0.402188 | 7.4:+24489948 | MS.gene033605:CDS |
| AAATAATTGATAGTCTTTCT+CGG | 0.408351 | 7.4:+24490255 | MS.gene033605:CDS |
| ATGGCAGGTTGATGAGTCAT+TGG | 0.410508 | 7.4:+24492184 | MS.gene033605:intron |
| TGAAGCTTTAAAACACCGTT+TGG | 0.415620 | 7.4:-24490851 | None:intergenic |
| AAATACGTACAACAAGAATA+TGG | 0.417215 | 7.4:-24490726 | None:intergenic |
| TTAAGACCTTAGTGCTCAAT+GGG | 0.429285 | 7.4:+24492225 | MS.gene033605:CDS |
| TAATGAAAGTTCCTTCTTCT+GGG | 0.432772 | 7.4:-24489834 | None:intergenic |
| GTTAAGACCTTAGTGCTCAA+TGG | 0.445730 | 7.4:+24492224 | MS.gene033605:CDS |
| ATACAGTCAAAAGCCTTGAT+TGG | 0.447917 | 7.4:+24490302 | MS.gene033605:CDS |
| TGAGGTTTCGCCAACAAAAC+CGG | 0.453631 | 7.4:-24490458 | None:intergenic |
| AAAGTTCCTTCTTCTGGGAT+AGG | 0.460451 | 7.4:-24489829 | None:intergenic |
| AATTGAATCTATTGACATGA+TGG | 0.460838 | 7.4:-24492253 | None:intergenic |
| TCAAAAGCCTTGATTGGAAT+AGG | 0.471258 | 7.4:+24490308 | MS.gene033605:CDS |
| GTAGGAATCGGAAACCCTCC+TGG | 0.472720 | 7.4:+24491727 | MS.gene033605:intron |
| CTTTAACCTATCCCAGAAGA+AGG | 0.477782 | 7.4:+24489823 | MS.gene033605:CDS |
| TGCCATGGTATTTATTTCCA+GGG | 0.492429 | 7.4:-24489980 | None:intergenic |
| TCTGGGATAGGTTAAAGATA+AGG | 0.494074 | 7.4:-24489817 | None:intergenic |
| CTTCAACCTAAAGGTGGACA+TGG | 0.505877 | 7.4:+24490869 | MS.gene033605:CDS |
| TCTACAAAAGTTCAGTTCAG+TGG | 0.508418 | 7.4:+24491774 | MS.gene033605:CDS |
| CAGTTCAGTGGAAAGAAAGC+AGG | 0.510677 | 7.4:+24491786 | MS.gene033605:CDS |
| GCTTTAAAACACCGTTTGGA+AGG | 0.513540 | 7.4:-24490847 | None:intergenic |
| ATATGCACCTATTCCAATCA+AGG | 0.514623 | 7.4:-24490315 | None:intergenic |
| GTGGACATGGGCATCACAAT+GGG | 0.516901 | 7.4:+24490882 | MS.gene033605:CDS |
| GTTGTTGGCTTGGGTAACCC+TGG | 0.525883 | 7.4:+24489963 | MS.gene033605:CDS |
| ATAAACTGGAATATACTCCT+TGG | 0.539724 | 7.4:+24489937 | MS.gene033605:CDS |
| GTTAAAGGTTGGGCCTCTTG+CGG | 0.543533 | 7.4:+24490681 | MS.gene033605:intron |
| AATGTGATTGGCCATTTGGA+TGG | 0.549742 | 7.4:+24491589 | MS.gene033605:CDS |
| GATAGTCTTTCTCGGTCAGA+AGG | 0.550469 | 7.4:+24490263 | MS.gene033605:CDS |
| GTTAAACCCATTGAGCACTA+AGG | 0.557059 | 7.4:-24492231 | None:intergenic |
| GGATAGGTTAAAGATAAGGT+TGG | 0.559820 | 7.4:-24489813 | None:intergenic |
| AGGTTCTATAGGAGAAGTAC+CGG | 0.559828 | 7.4:+24490439 | MS.gene033605:intron |
| GTGTGGAACCGAACAACGAA+CGG | 0.573170 | 7.4:-24489892 | None:intergenic |
| TTAAAGCTTCAACCTAAAGG+TGG | 0.579023 | 7.4:+24490863 | MS.gene033605:CDS |
| GGTGGACATGGGCATCACAA+TGG | 0.579435 | 7.4:+24490881 | MS.gene033605:CDS |
| AATCACGAGAACCATCCAAA+TGG | 0.582644 | 7.4:-24491600 | None:intergenic |
| CCCAAGCCAACAACAAGCCA+AGG | 0.596759 | 7.4:-24489954 | None:intergenic |
| TCTCCATTGTTATTTGTGTG+TGG | 0.602143 | 7.4:-24489909 | None:intergenic |
| TTACATTGTGTCTAGTGCCA+TGG | 0.610008 | 7.4:-24489995 | None:intergenic |
| GATGAAACTAGCCTTCCAAA+CGG | 0.612453 | 7.4:+24490836 | MS.gene033605:CDS |
| ACTCGATAATATGCCGCAAG+AGG | 0.622540 | 7.4:-24490694 | None:intergenic |
| TTAAATCCATAGTTCCAGGA+GGG | 0.631727 | 7.4:-24491741 | None:intergenic |
| AACAAACCGATTGCAAGTCG+AGG | 0.634342 | 7.4:-24491625 | None:intergenic |
| GTTGATGAGTCATTGGAGCA+AGG | 0.639313 | 7.4:+24492191 | MS.gene033605:CDS |
| GTTCCACACACAAATAACAA+TGG | 0.645157 | 7.4:+24489906 | MS.gene033605:CDS |
| TTCAACCTAAAGGTGGACAT+GGG | 0.647848 | 7.4:+24490870 | MS.gene033605:CDS |
| AACCCTGGAAATAAATACCA+TGG | 0.650251 | 7.4:+24489978 | MS.gene033605:CDS |
| ACAACAAGAATATGGCGCAA+AGG | 0.659160 | 7.4:-24490718 | None:intergenic |
| CTTAAATCCATAGTTCCAGG+AGG | 0.685463 | 7.4:-24491742 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | CAAATAAAATAAAAAATCAA+TGG | - | chr7.4:24490350-24490369 | None:intergenic | 10.0% |
| !!! | TATTAAGATTTTTTAAGTAT+CGG | + | chr7.4:24490935-24490954 | MS.gene033605:intron | 10.0% |
| !! | AAATAAAAAGAAAACAGTAT+TGG | - | chr7.4:24492159-24492178 | None:intergenic | 15.0% |
| !! | ATCAATTCAAATACAAAAAA+AGG | - | chr7.4:24492135-24492154 | None:intergenic | 15.0% |
| !! | TAAAATAAAAAATCAATGGT+AGG | - | chr7.4:24490346-24490365 | None:intergenic | 15.0% |
| !!! | CACATTTTTAATATTGTTAA+AGG | + | chr7.4:24490666-24490685 | MS.gene033605:intron | 15.0% |
| !!! | TTTTAATATTGTTAAAGGTT+GGG | + | chr7.4:24490671-24490690 | MS.gene033605:intron | 15.0% |
| !!! | TTTTTAATATTGTTAAAGGT+TGG | + | chr7.4:24490670-24490689 | MS.gene033605:intron | 15.0% |
| !! | AAGAGTAAAAAGAATTTCAA+CGG | - | chr7.4:24491151-24491170 | None:intergenic | 20.0% |
| !! | AATAAGTCAAGGAAAAAAAA+AGG | - | chr7.4:24491426-24491445 | None:intergenic | 20.0% |
| !! | ATGTCAATAGATTCAATTTA+GGG | + | chr7.4:24492258-24492277 | MS.gene033605:CDS | 20.0% |
| !! | CAATAACTAAAACAAATGAA+TGG | - | chr7.4:24490026-24490045 | None:intergenic | 20.0% |
| !! | GAATTAAGATATGTATAGTA+AGG | + | chr7.4:24491075-24491094 | MS.gene033605:intron | 20.0% |
| !! | TGTTACAGTTTAGAAATTTA+TGG | + | chr7.4:24490767-24490786 | MS.gene033605:intron | 20.0% |
| !! | TTAAATAAGTCAAGAAAACA+AGG | - | chr7.4:24491475-24491494 | None:intergenic | 20.0% |
| !! | TTATCTAGGTTTACATATTA+TGG | - | chr7.4:24491256-24491275 | None:intergenic | 20.0% |
| !!! | AAACATACATGAATTTTAGT+GGG | + | chr7.4:24490480-24490499 | MS.gene033605:CDS | 20.0% |
| !!! | AAATAATTGATAGTCTTTCT+CGG | + | chr7.4:24490255-24490274 | MS.gene033605:CDS | 20.0% |
| !!! | AAATTGCATTTTTACTTTGT+AGG | + | chr7.4:24491709-24491728 | MS.gene033605:intron | 20.0% |
| !!! | CAAGATTTAAGTTATTATCT+AGG | - | chr7.4:24491270-24491289 | None:intergenic | 20.0% |
| !!! | CATTCATTTGTTTTAGTTAT+TGG | + | chr7.4:24490024-24490043 | MS.gene033605:intron | 20.0% |
| !!! | CTTTTTATTTTTTTAATGGC+AGG | + | chr7.4:24492169-24492188 | MS.gene033605:intron | 20.0% |
| !!! | GAAATTTATGGATTTTTCTT+TGG | + | chr7.4:24490779-24490798 | MS.gene033605:intron | 20.0% |
| !!! | TATTCTATACATTTTAGTGA+TGG | + | chr7.4:24491326-24491345 | MS.gene033605:intron | 20.0% |
| !!! | TTGTACTTAAACTAATTTTG+TGG | + | chr7.4:24490208-24490227 | MS.gene033605:intron | 20.0% |
| !!! | TTGTTGTATTTCTAATATCA+TGG | + | chr7.4:24490911-24490930 | MS.gene033605:intron | 20.0% |
| !!! | TTTTATGGATAATACAAAGA+CGG | + | chr7.4:24491382-24491401 | MS.gene033605:intron | 20.0% |
| !!! | TTTTTTTCCTTGACTTATTT+AGG | + | chr7.4:24491427-24491446 | MS.gene033605:intron | 20.0% |
| ! | AAATACGTACAACAAGAATA+TGG | - | chr7.4:24490729-24490748 | None:intergenic | 25.0% |
| ! | AAGATATGTATAGTAAGGAT+TGG | + | chr7.4:24491080-24491099 | MS.gene033605:intron | 25.0% |
| ! | AATAACTTAAATCTTGCCAT+GGG | + | chr7.4:24491274-24491293 | MS.gene033605:intron | 25.0% |
| ! | AATTGAATCTATTGACATGA+TGG | - | chr7.4:24492256-24492275 | None:intergenic | 25.0% |
| ! | AGATATGTATAGTAAGGATT+GGG | + | chr7.4:24491081-24491100 | MS.gene033605:intron | 25.0% |
| ! | AGCAAATTATAAGTTAGACA+AGG | + | chr7.4:24492012-24492031 | MS.gene033605:intron | 25.0% |
| ! | CATGTCAATAGATTCAATTT+AGG | + | chr7.4:24492257-24492276 | MS.gene033605:CDS | 25.0% |
| ! | CCAAATATGATTTCAAGAAT+AGG | + | chr7.4:24490960-24490979 | MS.gene033605:intron | 25.0% |
| ! | CCTATTCTTGAAATCATATT+TGG | - | chr7.4:24490963-24490982 | None:intergenic | 25.0% |
| ! | CTAAAATTCATGTATGTTTG+AGG | - | chr7.4:24490479-24490498 | None:intergenic | 25.0% |
| ! | GAAATTATGAAGTCTATAAC+TGG | + | chr7.4:24491542-24491561 | MS.gene033605:intron | 25.0% |
| ! | TAATAACTTAAATCTTGCCA+TGG | + | chr7.4:24491273-24491292 | MS.gene033605:intron | 25.0% |
| ! | TACAGATTGAAAAATGTGAT+TGG | + | chr7.4:24491577-24491596 | MS.gene033605:intron | 25.0% |
| ! | TCCATAGATAAGAACAATTT+AGG | + | chr7.4:24491924-24491943 | MS.gene033605:intron | 25.0% |
| ! | TCCTAAATTGTTCTTATCTA+TGG | - | chr7.4:24491928-24491947 | None:intergenic | 25.0% |
| ! | TTACTTCATGAATAATGAGA+TGG | + | chr7.4:24491011-24491030 | MS.gene033605:intron | 25.0% |
| ! | TTCGATTATTTGATATGTAC+AGG | + | chr7.4:24490419-24490438 | MS.gene033605:intron | 25.0% |
| ! | TTTATGGATAATACAAAGAC+GGG | + | chr7.4:24491383-24491402 | MS.gene033605:intron | 25.0% |
| ! | TTTCTAAACTGTAACAAAAC+AGG | - | chr7.4:24490763-24490782 | None:intergenic | 25.0% |
| !! | ACAATTTAGGATTTAGTTTC+TGG | + | chr7.4:24491937-24491956 | MS.gene033605:intron | 25.0% |
| !! | CAAACATACATGAATTTTAG+TGG | + | chr7.4:24490479-24490498 | MS.gene033605:CDS | 25.0% |
| !! | CATTTTTACTTTGTAGGAAT+CGG | + | chr7.4:24491715-24491734 | MS.gene033605:intron | 25.0% |
| !! | GTTTGTGGAAATTTTTATGT+AGG | + | chr7.4:24490808-24490827 | MS.gene033605:intron | 25.0% |
| !! | TCTTTTTACTCTTAACAATG+AGG | + | chr7.4:24491158-24491177 | MS.gene033605:intron | 25.0% |
| !! | TTGCAACTTCTATGATTTTA+TGG | + | chr7.4:24491367-24491386 | MS.gene033605:intron | 25.0% |
| !!! | AACATACATGAATTTTAGTG+GGG | + | chr7.4:24490481-24490500 | MS.gene033605:CDS | 25.0% |
| AAACACTTTAAGTGCATGTT+TGG | - | chr7.4:24490170-24490189 | None:intergenic | 30.0% | |
| AATATTATACAGGTTACCCA+TGG | - | chr7.4:24491293-24491312 | None:intergenic | 30.0% | |
| ATAAACTGGAATATACTCCT+TGG | + | chr7.4:24489937-24489956 | MS.gene033605:CDS | 30.0% | |
| ATAATGAAAGTTCCTTCTTC+TGG | - | chr7.4:24489838-24489857 | None:intergenic | 30.0% | |
| ATCAATGTTGCAATTAACCA+TGG | - | chr7.4:24490386-24490405 | None:intergenic | 30.0% | |
| CAATGGAGATACTAATAAAC+TGG | + | chr7.4:24489923-24489942 | MS.gene033605:CDS | 30.0% | |
| GTCTTCTATCAAGTGTAAAT+TGG | + | chr7.4:24491821-24491840 | MS.gene033605:intron | 30.0% | |
| GTTGAGAGCAAATATTATAC+AGG | - | chr7.4:24491303-24491322 | None:intergenic | 30.0% | |
| TAATGAAAGTTCCTTCTTCT+GGG | - | chr7.4:24489837-24489856 | None:intergenic | 30.0% | |
| TATACTCTGATAAACAACCA+AGG | - | chr7.4:24491684-24491703 | None:intergenic | 30.0% | |
| TCAATGTTGCAATTAACCAT+GGG | - | chr7.4:24490385-24490404 | None:intergenic | 30.0% | |
| TCATAATTTCCCAGTATAAG+AGG | - | chr7.4:24491532-24491551 | None:intergenic | 30.0% | |
| TTGATATGTACAGGTTCTAT+AGG | + | chr7.4:24490428-24490447 | MS.gene033605:intron | 30.0% | |
| TTTATAAGCTGATATAGCCT+TGG | + | chr7.4:24491664-24491683 | MS.gene033605:intron | 30.0% | |
| ! | TTTAGCTCCTAAATAAGTCA+AGG | - | chr7.4:24491437-24491456 | None:intergenic | 30.0% |
| ! | TTTTACTCTTAACAATGAGG+AGG | + | chr7.4:24491161-24491180 | MS.gene033605:intron | 30.0% |
| ! | TTTTGTGGATTCTCTATGTT+AGG | + | chr7.4:24490223-24490242 | MS.gene033605:intron | 30.0% |
| !! | GATGTTTTAAGTGAATAACG+AGG | - | chr7.4:24489861-24489880 | None:intergenic | 30.0% |
| !! | TTTCTTTGGCTTTAAGTTTG+TGG | + | chr7.4:24490793-24490812 | MS.gene033605:intron | 30.0% |
| !!! | GTTTTAAAGCTTCAACCTAA+AGG | + | chr7.4:24490860-24490879 | MS.gene033605:CDS | 30.0% |
| AACCCTGGAAATAAATACCA+TGG | + | chr7.4:24489978-24489997 | MS.gene033605:CDS | 35.0% | |
| AAGGCAAATATGTAGACAGT+TGG | + | chr7.4:24492031-24492050 | MS.gene033605:intron | 35.0% | |
| AAGTCATCTCCTCTTATACT+GGG | + | chr7.4:24491520-24491539 | MS.gene033605:intron | 35.0% | |
| ACACTTGATAGAAGACTAGA+AGG | - | chr7.4:24491817-24491836 | None:intergenic | 35.0% | |
| ATACAGTCAAAAGCCTTGAT+TGG | + | chr7.4:24490302-24490321 | MS.gene033605:CDS | 35.0% | |
| ATATGCACCTATTCCAATCA+AGG | - | chr7.4:24490318-24490337 | None:intergenic | 35.0% | |
| GGATAGGTTAAAGATAAGGT+TGG | - | chr7.4:24489816-24489835 | None:intergenic | 35.0% | |
| GTTCCACACACAAATAACAA+TGG | + | chr7.4:24489906-24489925 | MS.gene033605:CDS | 35.0% | |
| TCAAAAGCCTTGATTGGAAT+AGG | + | chr7.4:24490308-24490327 | MS.gene033605:CDS | 35.0% | |
| TCTACAAAAGTTCAGTTCAG+TGG | + | chr7.4:24491774-24491793 | MS.gene033605:CDS | 35.0% | |
| TGCCATGGTATTTATTTCCA+GGG | - | chr7.4:24489983-24490002 | None:intergenic | 35.0% | |
| TTAAAGCTTCAACCTAAAGG+TGG | + | chr7.4:24490863-24490882 | MS.gene033605:CDS | 35.0% | |
| TTAAATCCATAGTTCCAGGA+GGG | - | chr7.4:24491744-24491763 | None:intergenic | 35.0% | |
| TTAAGACCTTAGTGCTCAAT+GGG | + | chr7.4:24492225-24492244 | MS.gene033605:CDS | 35.0% | |
| ! | ATCATTTTCCGTTCGTTGTT+CGG | + | chr7.4:24489884-24489903 | MS.gene033605:CDS | 35.0% |
| ! | GAAAAATGTGATTGGCCATT+TGG | + | chr7.4:24491585-24491604 | MS.gene033605:CDS | 35.0% |
| ! | TCTGGGATAGGTTAAAGATA+AGG | - | chr7.4:24489820-24489839 | None:intergenic | 35.0% |
| !! | CATGAATTTTAGTGGGGAAT+CGG | + | chr7.4:24490487-24490506 | MS.gene033605:CDS | 35.0% |
| !! | TCTCCATTGTTATTTGTGTG+TGG | - | chr7.4:24489912-24489931 | None:intergenic | 35.0% |
| !! | TGAAGCTTTAAAACACCGTT+TGG | - | chr7.4:24490854-24490873 | None:intergenic | 35.0% |
| !! | TTGGTTTAGTTCTTCTGTCA+TGG | + | chr7.4:24491840-24491859 | MS.gene033605:intron | 35.0% |
| AATCACGAGAACCATCCAAA+TGG | - | chr7.4:24491603-24491622 | None:intergenic | 40.0% | |
| AATGAGGAGGTGGTATTATG+TGG | + | chr7.4:24491174-24491193 | MS.gene033605:intron | 40.0% | |
| ACAACAAGAATATGGCGCAA+AGG | - | chr7.4:24490721-24490740 | None:intergenic | 40.0% | |
| ACCTACAAAAGCAATAGGAG+GGG | + | chr7.4:24492058-24492077 | MS.gene033605:intron | 40.0% | |
| ATAGTAAGGATTGGGCTTCT+AGG | + | chr7.4:24491089-24491108 | MS.gene033605:intron | 40.0% | |
| ATGAGGAGGTGGTATTATGT+GGG | + | chr7.4:24491175-24491194 | MS.gene033605:intron | 40.0% | |
| CAAGTCATCTCCTCTTATAC+TGG | + | chr7.4:24491519-24491538 | MS.gene033605:intron | 40.0% | |
| CTTAAATCCATAGTTCCAGG+AGG | - | chr7.4:24491745-24491764 | None:intergenic | 40.0% | |
| CTTTAACCTATCCCAGAAGA+AGG | + | chr7.4:24489823-24489842 | MS.gene033605:CDS | 40.0% | |
| GACCTACAAAAGCAATAGGA+GGG | + | chr7.4:24492057-24492076 | MS.gene033605:intron | 40.0% | |
| GCTCTTAAATCCATAGTTCC+AGG | - | chr7.4:24491748-24491767 | None:intergenic | 40.0% | |
| GTGCCATGGTATTTATTTCC+AGG | - | chr7.4:24489984-24490003 | None:intergenic | 40.0% | |
| GTGGATTCTCTATGTTAGGT+TGG | + | chr7.4:24490227-24490246 | MS.gene033605:intron | 40.0% | |
| GTGTGACCTACAAAAGCAAT+AGG | + | chr7.4:24492053-24492072 | MS.gene033605:intron | 40.0% | |
| GTTAAACCCATTGAGCACTA+AGG | - | chr7.4:24492234-24492253 | None:intergenic | 40.0% | |
| GTTAAGACCTTAGTGCTCAA+TGG | + | chr7.4:24492224-24492243 | MS.gene033605:CDS | 40.0% | |
| TACTCTTAACAATGAGGAGG+TGG | + | chr7.4:24491164-24491183 | MS.gene033605:intron | 40.0% | |
| TGACCTACAAAAGCAATAGG+AGG | + | chr7.4:24492056-24492075 | MS.gene033605:intron | 40.0% | |
| TGTTGCAATTAACCATGGGA+AGG | - | chr7.4:24490381-24490400 | None:intergenic | 40.0% | |
| TTACATTGTGTCTAGTGCCA+TGG | - | chr7.4:24489998-24490017 | None:intergenic | 40.0% | |
| TTCAACCTAAAGGTGGACAT+GGG | + | chr7.4:24490870-24490889 | MS.gene033605:CDS | 40.0% | |
| ! | AATGTGATTGGCCATTTGGA+TGG | + | chr7.4:24491589-24491608 | MS.gene033605:CDS | 40.0% |
| ! | AGGTTCTATAGGAGAAGTAC+CGG | + | chr7.4:24490439-24490458 | MS.gene033605:intron | 40.0% |
| ! | ATCTTAGTGCCACAGTTTTC+AGG | - | chr7.4:24492089-24492108 | None:intergenic | 40.0% |
| ! | TTTGCTATCAAACCTTCCCA+TGG | + | chr7.4:24490366-24490385 | MS.gene033605:intron | 40.0% |
| !! | AAAGTTCCTTCTTCTGGGAT+AGG | - | chr7.4:24489832-24489851 | None:intergenic | 40.0% |
| !! | GATGAAACTAGCCTTCCAAA+CGG | + | chr7.4:24490836-24490855 | MS.gene033605:CDS | 40.0% |
| !! | GATTTTCCTCGACTTGCAAT+CGG | + | chr7.4:24491619-24491638 | MS.gene033605:CDS | 40.0% |
| !! | GCTTTAAAACACCGTTTGGA+AGG | - | chr7.4:24490850-24490869 | None:intergenic | 40.0% |
| !! | TATACTCCTTGGCTTGTTGT+TGG | + | chr7.4:24489948-24489967 | MS.gene033605:CDS | 40.0% |
| !! | TGTGTTGGTGGTGTCATATA+AGG | + | chr7.4:24491113-24491132 | MS.gene033605:intron | 40.0% |
| AACAAACCGATTGCAAGTCG+AGG | - | chr7.4:24491628-24491647 | None:intergenic | 45.0% | |
| ACACACGCACACACTGAAAT+TGG | + | chr7.4:24490558-24490577 | MS.gene033605:intron | 45.0% | |
| ACTCGATAATATGCCGCAAG+AGG | - | chr7.4:24490697-24490716 | None:intergenic | 45.0% | |
| CAGTTCAGTGGAAAGAAAGC+AGG | + | chr7.4:24491786-24491805 | MS.gene033605:CDS | 45.0% | |
| CTTCAACCTAAAGGTGGACA+TGG | + | chr7.4:24490869-24490888 | MS.gene033605:CDS | 45.0% | |
| GATAGTCTTTCTCGGTCAGA+AGG | + | chr7.4:24490263-24490282 | MS.gene033605:CDS | 45.0% | |
| GCACACACTGAAATTGGTCA+TGG | + | chr7.4:24490564-24490583 | MS.gene033605:intron | 45.0% | |
| GGGGTTAAACCTGAAAACTG+TGG | + | chr7.4:24492077-24492096 | MS.gene033605:intron | 45.0% | |
| GTCATATAAGGCGGATACGA+AGG | + | chr7.4:24491125-24491144 | MS.gene033605:intron | 45.0% | |
| TGAGGTTTCGCCAACAAAAC+CGG | - | chr7.4:24490461-24490480 | None:intergenic | 45.0% | |
| ! | GTTGATGAGTCATTGGAGCA+AGG | + | chr7.4:24492191-24492210 | MS.gene033605:CDS | 45.0% |
| !! | ACCCCTCCTATTGCTTTTGT+AGG | - | chr7.4:24492062-24492081 | None:intergenic | 45.0% |
| !! | ATGGCAGGTTGATGAGTCAT+TGG | + | chr7.4:24492184-24492203 | MS.gene033605:intron | 45.0% |
| !! | ATTGGGCTTCTAGGATGTGT+TGG | + | chr7.4:24491098-24491117 | MS.gene033605:intron | 45.0% |
| !! | GTTGGTGGTGTCATATAAGG+CGG | + | chr7.4:24491116-24491135 | MS.gene033605:intron | 45.0% |
| !!! | AGGAGAAGTACCGGTTTTGT+TGG | + | chr7.4:24490448-24490467 | MS.gene033605:CDS | 45.0% |
| !!! | TTTTCTTTTTATTTTTTTAA+TGG | + | chr7.4:24492165-24492184 | MS.gene033605:intron | 5.0% |
| GTGGACATGGGCATCACAAT+GGG | + | chr7.4:24490882-24490901 | MS.gene033605:CDS | 50.0% | |
| GTGTGGAACCGAACAACGAA+CGG | - | chr7.4:24489895-24489914 | None:intergenic | 50.0% | |
| GTTAAAGGTTGGGCCTCTTG+CGG | + | chr7.4:24490681-24490700 | MS.gene033605:intron | 50.0% | |
| TGATGCCCATGTCCACCTTT+AGG | - | chr7.4:24490878-24490897 | None:intergenic | 50.0% | |
| !! | CCTTGGCTTGTTGTTGGCTT+GGG | + | chr7.4:24489954-24489973 | MS.gene033605:CDS | 50.0% |
| !! | TCCTTGGCTTGTTGTTGGCT+TGG | + | chr7.4:24489953-24489972 | MS.gene033605:CDS | 50.0% |
| CCCAAGCCAACAACAAGCCA+AGG | - | chr7.4:24489957-24489976 | None:intergenic | 55.0% | |
| CGGAAACCCTCCTGGAACTA+TGG | + | chr7.4:24491735-24491754 | MS.gene033605:CDS | 55.0% | |
| GGTGGACATGGGCATCACAA+TGG | + | chr7.4:24490881-24490900 | MS.gene033605:CDS | 55.0% | |
| GTAGGAATCGGAAACCCTCC+TGG | + | chr7.4:24491727-24491746 | MS.gene033605:intron | 55.0% | |
| !! | GGGCTTCTAGGATGTGTTGG+TGG | + | chr7.4:24491101-24491120 | MS.gene033605:intron | 55.0% |
| !! | GTTGTTGGCTTGGGTAACCC+TGG | + | chr7.4:24489963-24489982 | MS.gene033605:CDS | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7.4 | gene | 24489786 | 24492307 | 24489786 | ID=MS.gene033605 |
| chr7.4 | mRNA | 24489786 | 24492307 | 24489786 | ID=MS.gene033605.t1;Parent=MS.gene033605 |
| chr7.4 | exon | 24489786 | 24490013 | 24489786 | ID=MS.gene033605.t1.exon1;Parent=MS.gene033605.t1 |
| chr7.4 | CDS | 24489786 | 24490013 | 24489786 | ID=cds.MS.gene033605.t1;Parent=MS.gene033605.t1 |
| chr7.4 | exon | 24490245 | 24490329 | 24490245 | ID=MS.gene033605.t1.exon2;Parent=MS.gene033605.t1 |
| chr7.4 | CDS | 24490245 | 24490329 | 24490245 | ID=cds.MS.gene033605.t1;Parent=MS.gene033605.t1 |
| chr7.4 | exon | 24490441 | 24490508 | 24490441 | ID=MS.gene033605.t1.exon3;Parent=MS.gene033605.t1 |
| chr7.4 | CDS | 24490441 | 24490508 | 24490441 | ID=cds.MS.gene033605.t1;Parent=MS.gene033605.t1 |
| chr7.4 | exon | 24490688 | 24490738 | 24490688 | ID=MS.gene033605.t1.exon4;Parent=MS.gene033605.t1 |
| chr7.4 | CDS | 24490688 | 24490738 | 24490688 | ID=cds.MS.gene033605.t1;Parent=MS.gene033605.t1 |
| chr7.4 | exon | 24490830 | 24490903 | 24490830 | ID=MS.gene033605.t1.exon5;Parent=MS.gene033605.t1 |
| chr7.4 | CDS | 24490830 | 24490903 | 24490830 | ID=cds.MS.gene033605.t1;Parent=MS.gene033605.t1 |
| chr7.4 | exon | 24491582 | 24491640 | 24491582 | ID=MS.gene033605.t1.exon6;Parent=MS.gene033605.t1 |
| chr7.4 | CDS | 24491582 | 24491640 | 24491582 | ID=cds.MS.gene033605.t1;Parent=MS.gene033605.t1 |
| chr7.4 | exon | 24491731 | 24491807 | 24491731 | ID=MS.gene033605.t1.exon7;Parent=MS.gene033605.t1 |
| chr7.4 | CDS | 24491731 | 24491807 | 24491731 | ID=cds.MS.gene033605.t1;Parent=MS.gene033605.t1 |
| chr7.4 | exon | 24492191 | 24492307 | 24492191 | ID=MS.gene033605.t1.exon8;Parent=MS.gene033605.t1 |
| chr7.4 | CDS | 24492191 | 24492307 | 24492191 | ID=cds.MS.gene033605.t1;Parent=MS.gene033605.t1 |
| Gene Sequence |
| Protein sequence |
