AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene033950

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene033950.t1 MTR_2g046710 99.495 396 2 0 1 396 1 396 0.0 816
MS.gene033950.t1 MTR_4g123810 93.622 392 25 0 1 392 1 392 0.0 741
MS.gene033950.t1 MTR_7g110310 93.316 389 26 0 4 392 3 391 0.0 739
MS.gene033950.t1 MTR_7g102120 90.415 386 37 0 4 389 2 387 0.0 704
MS.gene033950.t1 MTR_1g063060 87.824 386 47 0 4 389 2 387 0.0 693
MS.gene033950.t1 MTR_1g063060 87.824 386 47 0 4 389 20 405 0.0 692
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene033950.t1 AT3G17390 94.103 390 23 0 4 393 2 391 0.0 743
MS.gene033950.t1 AT1G02500 92.545 389 29 0 4 392 2 390 0.0 724
MS.gene033950.t1 AT1G02500 92.545 389 29 0 4 392 2 390 0.0 724
MS.gene033950.t1 AT4G01850 91.003 389 35 0 4 392 2 390 0.0 721
MS.gene033950.t1 AT4G01850 91.003 389 35 0 4 392 2 390 0.0 721
MS.gene033950.t1 AT2G36880 90.415 386 37 0 4 389 2 387 0.0 707
MS.gene033950.t1 AT2G36880 90.415 386 37 0 4 389 2 387 0.0 707

Find 110 sgRNAs with CRISPR-Local

Find 117 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ACTGCTGCTTATGGACATTT+TGG 0.240476 2.2:+40247380 MS.gene033950:CDS
ATGTTAAGGATTTCCTTATC+AGG 0.261463 2.2:-40247272 None:intergenic
TTCCTTATCAGGGATCTTTC+CGG 0.289318 2.2:-40247261 None:intergenic
GTTGCAAGAACATGGGTTAA+AGG 0.294303 2.2:-40246702 None:intergenic
CATGTTCTTGCAACCAAGTT+AGG 0.294943 2.2:+40246711 MS.gene033950:CDS
ACCAACATGGTTATGGTCTT+TGG 0.296902 2.2:+40246429 MS.gene033950:CDS
TTCTCATCAAGGTACTTCTC+TGG 0.310083 2.2:-40246945 None:intergenic
CATCGATACCTACGGTGGTT+GGG 0.340499 2.2:+40247052 MS.gene033950:CDS
ATCTGGTCGCAAAGCTTGTC+GGG 0.354536 2.2:-40246333 None:intergenic
TGAAAGAAACCTTTGACTTC+AGG 0.356558 2.2:+40247297 MS.gene033950:CDS
TTAAGAGGGGTGGAAATAAC+AGG 0.368924 2.2:+40247348 MS.gene033950:CDS
TCACATGCAACTTTGCTGTC+TGG 0.378990 2.2:-40246393 None:intergenic
ATCAGCTGCAATTTCATCAT+TGG 0.382947 2.2:-40246892 None:intergenic
GTGATCAAGGTCACATGTTC+GGG 0.391846 2.2:+40246649 MS.gene033950:CDS
CTATCAACCTTGATCTTAAG+AGG 0.391961 2.2:+40247333 MS.gene033950:CDS
GATATTGCTCAAGGTGTTCA+TGG 0.399050 2.2:+40246591 MS.gene033950:CDS
GGTGATCAAGGTCACATGTT+CGG 0.414273 2.2:+40246648 MS.gene033950:CDS
CACAAAGACCAACATGGTTA+TGG 0.418184 2.2:+40246422 MS.gene033950:CDS
AGGTTTCTTTCACAATGTTA+AGG 0.420122 2.2:-40247286 None:intergenic
TTCCACCCCTCTTAAGATCA+AGG 0.427046 2.2:-40247340 None:intergenic
TCTCATCAAGGTACTTCTCT+GGG 0.433415 2.2:-40246944 None:intergenic
AGGTTGATAGAGATCATTCC+TGG 0.433466 2.2:-40247320 None:intergenic
CACGGTGACGCTGGTCTAAC+CGG 0.435684 2.2:+40247017 MS.gene033950:CDS
ATCTTCCACTTGAACCCTTC+AGG 0.443169 2.2:+40246972 MS.gene033950:CDS
TGAACACCTTGAGCAATATC+AGG 0.445358 2.2:-40246588 None:intergenic
TCACAGATTCAGATGTGTAT+AGG 0.445528 2.2:-40246299 None:intergenic
GGTTGGGGTGCACACGGTGG+TGG 0.446281 2.2:+40247068 MS.gene033950:CDS
CACGGTGGTGGTGCTTTCTC+CGG 0.452162 2.2:+40247080 MS.gene033950:CDS
GCAAAGAGTATTGTTGCTAA+TGG 0.456252 2.2:+40247155 MS.gene033950:CDS
CTAACTTGGTTGCAAGAACA+TGG 0.459951 2.2:-40246710 None:intergenic
CGTCGTGCTGTGTTGAGATA+AGG 0.460565 2.2:-40246860 None:intergenic
CAAGAACGGCATCAGAGATC+TGG 0.466047 2.2:-40246350 None:intergenic
GAAACCTTTGACTTCAGGCC+AGG 0.467102 2.2:+40247302 MS.gene033950:CDS
GTGACTTGGGTCTTTCCATC+AGG 0.467493 2.2:-40246783 None:intergenic
CCTTCAGGCCGTTTCGTCAT+CGG 0.467571 2.2:+40246987 MS.gene033950:CDS
TTGCTAATGGACTTGCTAGA+AGG 0.469452 2.2:+40247168 MS.gene033950:CDS
ATCGATACCTACGGTGGTTG+GGG 0.475144 2.2:+40247053 MS.gene033950:CDS
ACAAACACGGACAATGGCTC+TGG 0.479016 2.2:-40247224 None:intergenic
CGTAACACATGCAGGAACAT+AGG 0.489461 2.2:+40246495 MS.gene033950:CDS
TTTGTTGATTCTTACGGTAC+CGG 0.493288 2.2:+40247242 MS.gene033950:CDS
TGAAGGGTTCAAGTGGAAGA+TGG 0.500503 2.2:-40246970 None:intergenic
TCCGTGTTTGTTGATTCTTA+CGG 0.503083 2.2:+40247236 MS.gene033950:CDS
GATCTGGTCGCAAAGCTTGT+CGG 0.504899 2.2:-40246334 None:intergenic
AGTGAGCTTAGCTCCTAACT+TGG 0.505858 2.2:-40246724 None:intergenic
GCAAGAACGGAACATGTCCT+TGG 0.512640 2.2:+40246754 MS.gene033950:CDS
GAAATTGGTGCTGGTGATCA+AGG 0.514486 2.2:+40246636 MS.gene033950:CDS
TGTTAAGGATTTCCTTATCA+GGG 0.514572 2.2:-40247271 None:intergenic
TACGGTGGTTGGGGTGCACA+CGG 0.522520 2.2:+40247062 MS.gene033950:CDS
AGGTACTTCTCTGGGATCAC+AGG 0.524549 2.2:-40246936 None:intergenic
GTGCAAGTTTCCTATGCTAT+CGG 0.528063 2.2:+40247197 MS.gene033950:CDS
TGCTGTCTGGATCTTGCTCA+AGG 0.528629 2.2:-40246380 None:intergenic
TACCGGAAAGATCCCTGATA+AGG 0.532446 2.2:+40247259 MS.gene033950:CDS
GCTAACTTTCCACCCTTGAG+TGG 0.533954 2.2:-40247440 None:intergenic
TCATCGATACCTACGGTGGT+TGG 0.534200 2.2:+40247051 MS.gene033950:CDS
TTCGTCATCGGTGGTCCTCA+CGG 0.537678 2.2:+40246999 MS.gene033950:CDS
TCACCAGCACCAATTTCCTC+AGG 0.537693 2.2:-40246630 None:intergenic
GGTGGTCCTCACGGTGACGC+TGG 0.538563 2.2:+40247008 MS.gene033950:CDS
CATTCCTGGCCTGAAGTCAA+AGG 0.538937 2.2:-40247306 None:intergenic
CTCACTGAAGTTCGCAAGAA+CGG 0.541655 2.2:+40246741 MS.gene033950:CDS
AACCTTGATCTTAAGAGGGG+TGG 0.542096 2.2:+40247338 MS.gene033950:CDS
CGATGACGAAACGGCCTGAA+GGG 0.544735 2.2:-40246986 None:intergenic
GAAATACTCAATAGTGACTT+GGG 0.547189 2.2:-40246796 None:intergenic
CATAAGCTCAGGTGTTTCAT+CGG 0.547507 2.2:-40246679 None:intergenic
TGAAATACTCAATAGTGACT+TGG 0.552787 2.2:-40246797 None:intergenic
GAGGACCACCGATGACGAAA+CGG 0.563585 2.2:-40246995 None:intergenic
AAGATCCAACAAAAGTCGAC+AGG 0.563704 2.2:+40247105 MS.gene033950:CDS
TGGGTTAAAGGCATAAGCTC+AGG 0.565243 2.2:-40246690 None:intergenic
TTTCAATGACAAGGGTGCCA+TGG 0.566099 2.2:+40246815 MS.gene033950:CDS
CACATCTGAATCTGTGAACG+AGG 0.567405 2.2:+40246305 MS.gene033950:CDS
GGAAGTTGTGAAGCCACTCA+AGG 0.570115 2.2:+40247427 MS.gene033950:CDS
TATCAACCTTGATCTTAAGA+GGG 0.570559 2.2:+40247334 MS.gene033950:CDS
CCGATGACGAAACGGCCTGA+AGG 0.572989 2.2:-40246987 None:intergenic
AGATTGTTCGTAACACATGC+AGG 0.575918 2.2:+40246487 MS.gene033950:CDS
ATCGATGATGATCTTGCGGC+CGG 0.584426 2.2:-40247036 None:intergenic
GTGTTGAGATAAGGACGGTA+TGG 0.586897 2.2:-40246851 None:intergenic
TGTCCTTGGTTGAGACCTGA+TGG 0.588820 2.2:+40246768 MS.gene033950:CDS
CCATCACTTCACTTAGGCAG+TGG 0.590313 2.2:-40247462 None:intergenic
TATTGAGTATTTCAATGACA+AGG 0.592614 2.2:+40246806 MS.gene033950:CDS
AGACCTGAGGAAATTGGTGC+TGG 0.593942 2.2:+40246627 MS.gene033950:CDS
GAATCAACAAACACGGACAA+TGG 0.604860 2.2:-40247230 None:intergenic
TCAGGCCGTTTCGTCATCGG+TGG 0.606053 2.2:+40246990 MS.gene033950:CDS
AACGGCCTGAAGGGTTCAAG+TGG 0.607726 2.2:-40246977 None:intergenic
CAGAGTCCTGATATTGCTCA+AGG 0.609518 2.2:+40246582 MS.gene033950:CDS
GAGATGATGCTGATTTCACA+TGG 0.613131 2.2:+40247405 MS.gene033950:CDS
CTCAAGGCAAGCATCAAGAA+CGG 0.613435 2.2:-40246364 None:intergenic
ATTGAGTATTTCAATGACAA+GGG 0.615601 2.2:+40246807 MS.gene033950:CDS
ACCAAAGACCATAACCATGT+TGG 0.617396 2.2:-40246430 None:intergenic
CTCTGGAACACCGATAGCAT+AGG 0.620591 2.2:-40247207 None:intergenic
AGGACGGTATGGACACGGAT+CGG 0.620832 2.2:-40246840 None:intergenic
AGATAAGGACGGTATGGACA+CGG 0.625832 2.2:-40246845 None:intergenic
CCAACAAAAGTCGACAGGAG+TGG 0.630861 2.2:+40247110 MS.gene033950:CDS
GAAGTTGTGAAGCCACTCAA+GGG 0.631025 2.2:+40247428 MS.gene033950:CDS
AAGATCATCATCGATACCTA+CGG 0.632923 2.2:+40247044 MS.gene033950:CDS
TCTGTTGTTCAATGTTGACA+AGG 0.633149 2.2:-40246563 None:intergenic
TAACTTGGTTGCAAGAACAT+GGG 0.635065 2.2:-40246709 None:intergenic
ATGGACACGGATCGGAACCA+TGG 0.635111 2.2:-40246832 None:intergenic
AGGTATCGATGATGATCTTG+CGG 0.652737 2.2:-40247040 None:intergenic
GTGTGCACCCCAACCACCGT+AGG 0.659434 2.2:-40247060 None:intergenic
ATCAACCTTGATCTTAAGAG+GGG 0.662473 2.2:+40247335 MS.gene033950:CDS
GTTGTGAAGCCACTCAAGGG+TGG 0.662760 2.2:+40247431 MS.gene033950:CDS
GGTGGTTGGGGTGCACACGG+TGG 0.663588 2.2:+40247065 MS.gene033950:CDS
TCTGGTCGCAAAGCTTGTCG+GGG 0.671297 2.2:-40246332 None:intergenic
TTTCCATCAGGTCTCAACCA+AGG 0.691469 2.2:-40246771 None:intergenic
ACCGTAAGAATCAACAAACA+CGG 0.692869 2.2:-40247237 None:intergenic
ACATCTGAATCTGTGAACGA+GGG 0.708400 2.2:+40246306 MS.gene033950:CDS
AGATGATGCTGATTTCACAT+GGG 0.714850 2.2:+40247406 MS.gene033950:CDS
GTTAGACCAGCGTCACCGTG+AGG 0.718676 2.2:-40247014 None:intergenic
ATCATCATCGATACCTACGG+TGG 0.735632 2.2:+40247047 MS.gene033950:CDS
GTGCTGTGTTGAGATAAGGA+CGG 0.743744 2.2:-40246856 None:intergenic
AACTTGCACAAAGACCAACA+TGG 0.753910 2.2:+40246416 MS.gene033950:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
! ATTGAGTATTTCAATGACAA+GGG + chr2.2:40246807-40246826 MS.gene033950:CDS 25.0%
! TATTGAGTATTTCAATGACA+AGG + chr2.2:40246806-40246825 MS.gene033950:CDS 25.0%
AGGTTTCTTTCACAATGTTA+AGG - chr2.2:40247289-40247308 None:intergenic 30.0%
ATGTTAAGGATTTCCTTATC+AGG - chr2.2:40247275-40247294 None:intergenic 30.0%
GAAATACTCAATAGTGACTT+GGG - chr2.2:40246799-40246818 None:intergenic 30.0%
TATCAACCTTGATCTTAAGA+GGG + chr2.2:40247334-40247353 MS.gene033950:CDS 30.0%
TGAAATACTCAATAGTGACT+TGG - chr2.2:40246800-40246819 None:intergenic 30.0%
TGTTAAGGATTTCCTTATCA+GGG - chr2.2:40247274-40247293 None:intergenic 30.0%
AAGATCATCATCGATACCTA+CGG + chr2.2:40247044-40247063 MS.gene033950:CDS 35.0%
ACAAAAAGACCTGAGGAAAT+TGG + chr2.2:40246621-40246640 MS.gene033950:CDS 35.0%
ACCGTAAGAATCAACAAACA+CGG - chr2.2:40247240-40247259 None:intergenic 35.0%
ATCAACCTTGATCTTAAGAG+GGG + chr2.2:40247335-40247354 MS.gene033950:CDS 35.0%
ATCAGCTGCAATTTCATCAT+TGG - chr2.2:40246895-40246914 None:intergenic 35.0%
CTATCAACCTTGATCTTAAG+AGG + chr2.2:40247333-40247352 MS.gene033950:CDS 35.0%
TAACTTGGTTGCAAGAACAT+GGG - chr2.2:40246712-40246731 None:intergenic 35.0%
TCACAGATTCAGATGTGTAT+AGG - chr2.2:40246302-40246321 None:intergenic 35.0%
TCTGTTGTTCAATGTTGACA+AGG - chr2.2:40246566-40246585 None:intergenic 35.0%
! GACTTTTGTTGGATCTTTAC+CGG - chr2.2:40247102-40247121 None:intergenic 35.0%
! TGAAAGAAACCTTTGACTTC+AGG + chr2.2:40247297-40247316 MS.gene033950:CDS 35.0%
!! AGATGATGCTGATTTCACAT+GGG + chr2.2:40247406-40247425 MS.gene033950:CDS 35.0%
!! GCAAAGAGTATTGTTGCTAA+TGG + chr2.2:40247155-40247174 MS.gene033950:CDS 35.0%
!! TCCGTGTTTGTTGATTCTTA+CGG + chr2.2:40247236-40247255 MS.gene033950:CDS 35.0%
!! TTTGTTGATTCTTACGGTAC+CGG + chr2.2:40247242-40247261 MS.gene033950:CDS 35.0%
!! TTTTTGAAGACTGCTGCTTA+TGG + chr2.2:40247371-40247390 MS.gene033950:CDS 35.0%
!!! GGTTTTGTTTCAGATGATGT+TGG + chr2.2:40246516-40246535 MS.gene033950:CDS 35.0%
AACTTGCACAAAGACCAACA+TGG + chr2.2:40246416-40246435 MS.gene033950:CDS 40.0%
AAGATCCAACAAAAGTCGAC+AGG + chr2.2:40247105-40247124 MS.gene033950:CDS 40.0%
ACATCTGAATCTGTGAACGA+GGG + chr2.2:40246306-40246325 MS.gene033950:CDS 40.0%
ACCAAAGACCATAACCATGT+TGG - chr2.2:40246433-40246452 None:intergenic 40.0%
ACCAACATGGTTATGGTCTT+TGG + chr2.2:40246429-40246448 MS.gene033950:CDS 40.0%
AGATTGTTCGTAACACATGC+AGG + chr2.2:40246487-40246506 MS.gene033950:CDS 40.0%
CACAAAGACCAACATGGTTA+TGG + chr2.2:40246422-40246441 MS.gene033950:CDS 40.0%
CATAAGCTCAGGTGTTTCAT+CGG - chr2.2:40246682-40246701 None:intergenic 40.0%
CATGTTCTTGCAACCAAGTT+AGG + chr2.2:40246711-40246730 MS.gene033950:CDS 40.0%
CCATCTTACAAAAAGACCTG+AGG + chr2.2:40246614-40246633 MS.gene033950:CDS 40.0%
CTAACTTGGTTGCAAGAACA+TGG - chr2.2:40246713-40246732 None:intergenic 40.0%
GAATCAACAAACACGGACAA+TGG - chr2.2:40247233-40247252 None:intergenic 40.0%
GTGCAAGTTTCCTATGCTAT+CGG + chr2.2:40247197-40247216 MS.gene033950:CDS 40.0%
TGAACACCTTGAGCAATATC+AGG - chr2.2:40246591-40246610 None:intergenic 40.0%
TTAAGAGGGGTGGAAATAAC+AGG + chr2.2:40247348-40247367 MS.gene033950:CDS 40.0%
TTCCTTATCAGGGATCTTTC+CGG - chr2.2:40247264-40247283 None:intergenic 40.0%
! CCTCAGGTCTTTTTGTAAGA+TGG - chr2.2:40246617-40246636 None:intergenic 40.0%
! GATATTGCTCAAGGTGTTCA+TGG + chr2.2:40246591-40246610 MS.gene033950:CDS 40.0%
! GGAAGATGGTTTTCTCATCA+AGG - chr2.2:40246959-40246978 None:intergenic 40.0%
! GTTGCAAGAACATGGGTTAA+AGG - chr2.2:40246705-40246724 None:intergenic 40.0%
! TCTCATCAAGGTACTTCTCT+GGG - chr2.2:40246947-40246966 None:intergenic 40.0%
! TTCTCATCAAGGTACTTCTC+TGG - chr2.2:40246948-40246967 None:intergenic 40.0%
!! ACTGCTGCTTATGGACATTT+TGG + chr2.2:40247380-40247399 MS.gene033950:CDS 40.0%
!! AGGTATCGATGATGATCTTG+CGG - chr2.2:40247043-40247062 None:intergenic 40.0%
!! AGGTTGATAGAGATCATTCC+TGG - chr2.2:40247323-40247342 None:intergenic 40.0%
!! GAGATGATGCTGATTTCACA+TGG + chr2.2:40247405-40247424 MS.gene033950:CDS 40.0%
!! TTGCTAATGGACTTGCTAGA+AGG + chr2.2:40247168-40247187 MS.gene033950:CDS 40.0%
AACCTTGATCTTAAGAGGGG+TGG + chr2.2:40247338-40247357 MS.gene033950:CDS 45.0%
AGATAAGGACGGTATGGACA+CGG - chr2.2:40246848-40246867 None:intergenic 45.0%
AGTGAGCTTAGCTCCTAACT+TGG - chr2.2:40246727-40246746 None:intergenic 45.0%
ATCATCATCGATACCTACGG+TGG + chr2.2:40247047-40247066 MS.gene033950:CDS 45.0%
ATCTTCCACTTGAACCCTTC+AGG + chr2.2:40246972-40246991 MS.gene033950:CDS 45.0%
CACATCTGAATCTGTGAACG+AGG + chr2.2:40246305-40246324 MS.gene033950:CDS 45.0%
CAGAGTCCTGATATTGCTCA+AGG + chr2.2:40246582-40246601 MS.gene033950:CDS 45.0%
CGTAACACATGCAGGAACAT+AGG + chr2.2:40246495-40246514 MS.gene033950:CDS 45.0%
CTCAAGGCAAGCATCAAGAA+CGG - chr2.2:40246367-40246386 None:intergenic 45.0%
CTCACTGAAGTTCGCAAGAA+CGG + chr2.2:40246741-40246760 MS.gene033950:CDS 45.0%
GAAGTTGTGAAGCCACTCAA+GGG + chr2.2:40247428-40247447 MS.gene033950:CDS 45.0%
GGTGATCAAGGTCACATGTT+CGG + chr2.2:40246648-40246667 MS.gene033950:CDS 45.0%
GTGATCAAGGTCACATGTTC+GGG + chr2.2:40246649-40246668 MS.gene033950:CDS 45.0%
GTGCTGTGTTGAGATAAGGA+CGG - chr2.2:40246859-40246878 None:intergenic 45.0%
GTGTTGAGATAAGGACGGTA+TGG - chr2.2:40246854-40246873 None:intergenic 45.0%
TACCGGAAAGATCCCTGATA+AGG + chr2.2:40247259-40247278 MS.gene033950:CDS 45.0%
TGAAGGGTTCAAGTGGAAGA+TGG - chr2.2:40246973-40246992 None:intergenic 45.0%
TTCCACCCCTCTTAAGATCA+AGG - chr2.2:40247343-40247362 None:intergenic 45.0%
TTTCCATCAGGTCTCAACCA+AGG - chr2.2:40246774-40246793 None:intergenic 45.0%
! TCACATGCAACTTTGCTGTC+TGG - chr2.2:40246396-40246415 None:intergenic 45.0%
! TGGGTTAAAGGCATAAGCTC+AGG - chr2.2:40246693-40246712 None:intergenic 45.0%
!! GAAATTGGTGCTGGTGATCA+AGG + chr2.2:40246636-40246655 MS.gene033950:CDS 45.0%
!! TTTCAATGACAAGGGTGCCA+TGG + chr2.2:40246815-40246834 MS.gene033950:CDS 45.0%
ACAAACACGGACAATGGCTC+TGG - chr2.2:40247227-40247246 None:intergenic 50.0%
AGACCTGAGGAAATTGGTGC+TGG + chr2.2:40246627-40246646 MS.gene033950:CDS 50.0%
ATCGATACCTACGGTGGTTG+GGG + chr2.2:40247053-40247072 MS.gene033950:CDS 50.0%
ATCGATGATGATCTTGCGGC+CGG - chr2.2:40247039-40247058 None:intergenic 50.0%
ATCTGGTCGCAAAGCTTGTC+GGG - chr2.2:40246336-40246355 None:intergenic 50.0%
CAAGAACGGCATCAGAGATC+TGG - chr2.2:40246353-40246372 None:intergenic 50.0%
CATCGATACCTACGGTGGTT+GGG + chr2.2:40247052-40247071 MS.gene033950:CDS 50.0%
CATTCCTGGCCTGAAGTCAA+AGG - chr2.2:40247309-40247328 None:intergenic 50.0%
CCAACAAAAGTCGACAGGAG+TGG + chr2.2:40247110-40247129 MS.gene033950:CDS 50.0%
CGTCGTGCTGTGTTGAGATA+AGG - chr2.2:40246863-40246882 None:intergenic 50.0%
GATCTGGTCGCAAAGCTTGT+CGG - chr2.2:40246337-40246356 None:intergenic 50.0%
GCAAGAACGGAACATGTCCT+TGG + chr2.2:40246754-40246773 MS.gene033950:CDS 50.0%
GCTAACTTTCCACCCTTGAG+TGG - chr2.2:40247443-40247462 None:intergenic 50.0%
GGAAGTTGTGAAGCCACTCA+AGG + chr2.2:40247427-40247446 MS.gene033950:CDS 50.0%
TCACCAGCACCAATTTCCTC+AGG - chr2.2:40246633-40246652 None:intergenic 50.0%
TCATCGATACCTACGGTGGT+TGG + chr2.2:40247051-40247070 MS.gene033950:CDS 50.0%
TGCTGTCTGGATCTTGCTCA+AGG - chr2.2:40246383-40246402 None:intergenic 50.0%
TGTCCTTGGTTGAGACCTGA+TGG + chr2.2:40246768-40246787 MS.gene033950:CDS 50.0%
! GAAACCTTTGACTTCAGGCC+AGG + chr2.2:40247302-40247321 MS.gene033950:CDS 50.0%
! GTGACTTGGGTCTTTCCATC+AGG - chr2.2:40246786-40246805 None:intergenic 50.0%
!! AGGTACTTCTCTGGGATCAC+AGG - chr2.2:40246939-40246958 None:intergenic 50.0%
!! CTCTGGAACACCGATAGCAT+AGG - chr2.2:40247210-40247229 None:intergenic 50.0%
!!! CCACTCCTGTCGACTTTTGT+TGG - chr2.2:40247113-40247132 None:intergenic 50.0%
AACGGCCTGAAGGGTTCAAG+TGG - chr2.2:40246980-40246999 None:intergenic 55.0%
AGGACGGTATGGACACGGAT+CGG - chr2.2:40246843-40246862 None:intergenic 55.0%
ATGGACACGGATCGGAACCA+TGG - chr2.2:40246835-40246854 None:intergenic 55.0%
CCTTCAGGCCGTTTCGTCAT+CGG + chr2.2:40246987-40247006 MS.gene033950:CDS 55.0%
CGATGACGAAACGGCCTGAA+GGG - chr2.2:40246989-40247008 None:intergenic 55.0%
GAGGACCACCGATGACGAAA+CGG - chr2.2:40246998-40247017 None:intergenic 55.0%
GTTGTGAAGCCACTCAAGGG+TGG + chr2.2:40247431-40247450 MS.gene033950:CDS 55.0%
TCTGGTCGCAAAGCTTGTCG+GGG - chr2.2:40246335-40246354 None:intergenic 55.0%
TTCGTCATCGGTGGTCCTCA+CGG + chr2.2:40246999-40247018 MS.gene033950:CDS 55.0%
CCGATGACGAAACGGCCTGA+AGG - chr2.2:40246990-40247009 None:intergenic 60.0%
GTTAGACCAGCGTCACCGTG+AGG - chr2.2:40247017-40247036 None:intergenic 60.0%
TACGGTGGTTGGGGTGCACA+CGG + chr2.2:40247062-40247081 MS.gene033950:CDS 60.0%
TCAGGCCGTTTCGTCATCGG+TGG + chr2.2:40246990-40247009 MS.gene033950:CDS 60.0%
! CACGGTGACGCTGGTCTAAC+CGG + chr2.2:40247017-40247036 MS.gene033950:CDS 60.0%
! CACGGTGGTGGTGCTTTCTC+CGG + chr2.2:40247080-40247099 MS.gene033950:CDS 60.0%
GTGTGCACCCCAACCACCGT+AGG - chr2.2:40247063-40247082 None:intergenic 65.0%
GGTGGTCCTCACGGTGACGC+TGG + chr2.2:40247008-40247027 MS.gene033950:CDS 70.0%
GGTGGTTGGGGTGCACACGG+TGG + chr2.2:40247065-40247084 MS.gene033950:CDS 70.0%
GGTTGGGGTGCACACGGTGG+TGG + chr2.2:40247068-40247087 MS.gene033950:CDS 70.0%


Chromosome Type Strat End Strand Name
chr2.2 gene 40246282 40247472 40246282 ID=MS.gene033950
chr2.2 mRNA 40246282 40247472 40246282 ID=MS.gene033950.t1;Parent=MS.gene033950
chr2.2 exon 40246282 40247472 40246282 ID=MS.gene033950.t1.exon1;Parent=MS.gene033950.t1
chr2.2 CDS 40246282 40247472 40246282 ID=cds.MS.gene033950.t1;Parent=MS.gene033950.t1
Gene Sequence

>MS.gene033950

ATGGCAACAGAAACTTTCCTATACACATCTGAATCTGTGAACGAGGGACACCCCGACAAGCTTTGCGACCAGATCTCTGATGCCGTTCTTGATGCTTGCCTTGAGCAAGATCCAGACAGCAAAGTTGCATGTGAAACTTGCACAAAGACCAACATGGTTATGGTCTTTGGTGAGATCACAACAAAAGCAAATGTTGACTATGAAAAGATTGTTCGTAACACATGCAGGAACATAGGTTTTGTTTCAGATGATGTTGGTCTTGATGCTGACAACTGCAAAGTCCTTGTCAACATTGAACAACAGAGTCCTGATATTGCTCAAGGTGTTCATGGCCATCTTACAAAAAGACCTGAGGAAATTGGTGCTGGTGATCAAGGTCACATGTTCGGGTATGCTACCGATGAAACACCTGAGCTTATGCCTTTAACCCATGTTCTTGCAACCAAGTTAGGAGCTAAGCTCACTGAAGTTCGCAAGAACGGAACATGTCCTTGGTTGAGACCTGATGGAAAGACCCAAGTCACTATTGAGTATTTCAATGACAAGGGTGCCATGGTTCCGATCCGTGTCCATACCGTCCTTATCTCAACACAGCACGACGAAACTGTGACCAATGATGAAATTGCAGCTGATTTGAAACAACATGTGATCAAGCCTGTGATCCCAGAGAAGTACCTTGATGAGAAAACCATCTTCCACTTGAACCCTTCAGGCCGTTTCGTCATCGGTGGTCCTCACGGTGACGCTGGTCTAACCGGCCGCAAGATCATCATCGATACCTACGGTGGTTGGGGTGCACACGGTGGTGGTGCTTTCTCCGGTAAAGATCCAACAAAAGTCGACAGGAGTGGAGCTTACATCGTGAGACAAGCTGCAAAGAGTATTGTTGCTAATGGACTTGCTAGAAGGTGCATTGTGCAAGTTTCCTATGCTATCGGTGTTCCAGAGCCATTGTCCGTGTTTGTTGATTCTTACGGTACCGGAAAGATCCCTGATAAGGAAATCCTTAACATTGTGAAAGAAACCTTTGACTTCAGGCCAGGAATGATCTCTATCAACCTTGATCTTAAGAGGGGTGGAAATAACAGGTTTTTGAAGACTGCTGCTTATGGACATTTTGGTAGAGATGATGCTGATTTCACATGGGAAGTTGTGAAGCCACTCAAGGGTGGAAAGTTAGCCACTGCCTAA
Protein sequence

>MS.gene033950.t1

MATETFLYTSESVNEGHPDKLCDQISDAVLDACLEQDPDSKVACETCTKTNMVMVFGEITTKANVDYEKIVRNTCRNIGFVSDDVGLDADNCKVLVNIEQQSPDIAQGVHGHLTKRPEEIGAGDQGHMFGYATDETPELMPLTHVLATKLGAKLTEVRKNGTCPWLRPDGKTQVTIEYFNDKGAMVPIRVHTVLISTQHDETVTNDEIAADLKQHVIKPVIPEKYLDEKTIFHLNPSGRFVIGGPHGDAGLTGRKIIIDTYGGWGAHGGGAFSGKDPTKVDRSGAYIVRQAAKSIVANGLARRCIVQVSYAIGVPEPLSVFVDSYGTGKIPDKEILNIVKETFDFRPGMISINLDLKRGGNNRFLKTAAYGHFGRDDADFTWEVVKPLKGGKLATA