Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene033967.t1 | XP_013463678.1 | 97.7 | 265 | 6 | 0 | 1 | 265 | 1 | 265 | 1.00E-136 | 496.1 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene033967.t1 | Q9LRP1 | 81.8 | 264 | 47 | 1 | 1 | 263 | 1 | 264 | 9.2e-115 | 414.5 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene033967.t1 | A0A072V8M0 | 97.7 | 265 | 6 | 0 | 1 | 265 | 1 | 265 | 7.2e-137 | 496.1 |
TFs/TRs:
Gene ID | Type | Classification |
---|
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|
PPI:
Gene1 | Gene2 | Type |
---|---|---|
MS.gene033967 | MS.gene011609 | PPI |
MS.gene033967 | MS.gene61249 | PPI |
MS.gene033967 | MS.gene46386 | PPI |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene033967.t1 | MTR_2g045960 | 97.736 | 265 | 6 | 0 | 1 | 265 | 1 | 265 | 0.0 | 535 |
MS.gene033967.t1 | MTR_4g123910 | 88.302 | 265 | 31 | 0 | 1 | 265 | 1 | 265 | 1.19e-166 | 462 |
MS.gene033967.t1 | MTR_4g099140 | 63.813 | 257 | 88 | 2 | 7 | 261 | 7 | 260 | 4.82e-106 | 308 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene033967.t1 | AT3G17440 | 81.818 | 264 | 47 | 1 | 1 | 263 | 1 | 264 | 2.97e-153 | 428 |
MS.gene033967.t1 | AT1G48240 | 79.924 | 264 | 52 | 1 | 1 | 263 | 1 | 264 | 9.77e-151 | 421 |
MS.gene033967.t1 | AT3G17440 | 81.221 | 213 | 39 | 1 | 1 | 212 | 1 | 213 | 4.51e-124 | 352 |
MS.gene033967.t1 | AT1G48240 | 81.690 | 213 | 38 | 1 | 52 | 263 | 1 | 213 | 6.77e-122 | 347 |
MS.gene033967.t1 | AT2G35190 | 66.795 | 259 | 79 | 3 | 7 | 261 | 7 | 262 | 2.39e-110 | 319 |
Find 61 sgRNAs with CRISPR-Local
Find 0 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
TTGAGCTGTTTGTTCACTTC+TGG | 0.121538 | 2.2:+41502910 | None:intergenic |
CTTTCAAGGTTGTGGCAGTT+TGG | 0.234955 | 2.2:+41499092 | None:intergenic |
CTTTAATCTTGTCCAACTTC+TGG | 0.246151 | 2.2:+41503468 | None:intergenic |
CAGCTGGTTACTTTGTCTAT+TGG | 0.273105 | 2.2:+41503442 | None:intergenic |
TGAGCTGTTTGTTCACTTCT+GGG | 0.274585 | 2.2:+41502911 | None:intergenic |
GGAGCTGGAGGCGCCAATCC+TGG | 0.275218 | 2.2:+41498214 | None:intergenic |
TTTCAAGGTTGTGGCAGTTT+GGG | 0.302727 | 2.2:+41499093 | None:intergenic |
TGAACTTACTTGGCCTTTCA+AGG | 0.384292 | 2.2:+41499078 | None:intergenic |
CCTCAAGTGGAGCAGATTCA+TGG | 0.410127 | 2.2:-41506264 | MS.gene033967:CDS |
AATCAAGAACTTATAAATGC+TGG | 0.421675 | 2.2:-41499264 | MS.gene033967:CDS |
TTCCGATCTCCTTCACAAGC+TGG | 0.426038 | 2.2:+41498899 | None:intergenic |
CAGAAATGGCTTCCAGAAGT+TGG | 0.427223 | 2.2:-41503480 | MS.gene033967:CDS |
GGCCGAAGAAAATGTTCAAT+TGG | 0.428045 | 2.2:-41501268 | MS.gene033967:CDS |
TCCCTGTGAGTTCTTCCAGC+TGG | 0.431475 | 2.2:+41503426 | None:intergenic |
AAAAGCCTCCTGGTCGGAGC+TGG | 0.446002 | 2.2:+41498199 | None:intergenic |
TACTTGGCCTTTCAAGGTTG+TGG | 0.454866 | 2.2:+41499084 | None:intergenic |
AGCTGTTTGTTCACTTCTGG+GGG | 0.460105 | 2.2:+41502913 | None:intergenic |
TCCGATCTCCTTCACAAGCT+GGG | 0.461441 | 2.2:+41498900 | None:intergenic |
AATTCAGTTCTCAATTAAGA+AGG | 0.463648 | 2.2:-41498926 | MS.gene033967:CDS |
GAGCTGGAGGCGCCAATCCT+GGG | 0.464083 | 2.2:+41498215 | None:intergenic |
GAAAATGTTCAATTGGCATC+AGG | 0.467613 | 2.2:-41501261 | MS.gene033967:intron |
AATTGCCATCATTGTTGTAA+AGG | 0.471683 | 2.2:-41498732 | MS.gene033967:intron |
GACGATGGATGAAACTGATC+AGG | 0.474838 | 2.2:-41499235 | MS.gene033967:CDS |
CGTGAAATTAAAGATGAAGA+TGG | 0.477484 | 2.2:-41502943 | MS.gene033967:CDS |
CAATTACACCACAGACGATA+AGG | 0.479487 | 2.2:+41498750 | None:intergenic |
AGCCTCCTGGTCGGAGCTGG+AGG | 0.485326 | 2.2:+41498202 | None:intergenic |
GAGCTGTTTGTTCACTTCTG+GGG | 0.497180 | 2.2:+41502912 | None:intergenic |
GGCTATAGAAAGATCTAAGC+AGG | 0.501232 | 2.2:-41499214 | MS.gene033967:intron |
ATCAAGAACTTATAAATGCT+GGG | 0.502792 | 2.2:-41499263 | MS.gene033967:CDS |
CAAACTGCCACAACCTTGAA+AGG | 0.503625 | 2.2:-41499091 | MS.gene033967:CDS |
TGATACCTTTACAACAATGA+TGG | 0.507547 | 2.2:+41498727 | None:intergenic |
GTACATCAAACAATTGAAGT+AGG | 0.511074 | 2.2:-41499118 | MS.gene033967:CDS |
TGGCGCCTCCAGCTCCGACC+AGG | 0.516723 | 2.2:-41498207 | MS.gene033967:CDS |
CAATAGACAAAGTAACCAGC+TGG | 0.517827 | 2.2:-41503441 | MS.gene033967:CDS |
TTGAGGAGTCATCTGCAATC+CGG | 0.523808 | 2.2:+41506281 | None:intergenic |
TCTCTAATATCTTTGTTGTG+TGG | 0.527853 | 2.2:+41498241 | None:intergenic |
GGAAGATGAGGGAGTGCAAA+GGG | 0.533469 | 2.2:-41503406 | MS.gene033967:intron |
TATTAGAGATATCCCAGGAT+TGG | 0.535138 | 2.2:-41498227 | MS.gene033967:CDS |
TGTGAAGGAGATCGGAAGAA+AGG | 0.540410 | 2.2:-41498893 | MS.gene033967:intron |
TCCCAGCTTGTGAAGGAGAT+CGG | 0.543339 | 2.2:-41498901 | MS.gene033967:CDS |
CCATGAATCTGCTCCACTTG+AGG | 0.547843 | 2.2:+41506264 | None:intergenic |
CAAGGAACTAAATTCATATG+TGG | 0.554861 | 2.2:-41501660 | MS.gene033967:CDS |
CAATGATGAAAAGCAATCAA+TGG | 0.557115 | 2.2:-41502890 | MS.gene033967:intron |
TTTCTGTTCCTTATCGTCTG+TGG | 0.557552 | 2.2:-41498758 | MS.gene033967:CDS |
AAGAACTCACAGGGAAGATG+AGG | 0.558682 | 2.2:-41503418 | MS.gene033967:CDS |
AACCAGCTGGAAGAACTCAC+AGG | 0.566661 | 2.2:-41503428 | MS.gene033967:CDS |
TACATCAAACAATTGAAGTA+GGG | 0.569693 | 2.2:-41499117 | MS.gene033967:CDS |
CGCCTCCAGCTCCGACCAGG+AGG | 0.578460 | 2.2:-41498204 | MS.gene033967:CDS |
CCTTGCATACAAAAGCCTCC+TGG | 0.583817 | 2.2:+41498189 | None:intergenic |
GAAGGCTTCCCAGCTTGTGA+AGG | 0.586477 | 2.2:-41498908 | MS.gene033967:CDS |
GGCAGGGTCAAGTCAACCCA+TGG | 0.588474 | 2.2:-41501289 | MS.gene033967:CDS |
AATAGGTACATGAGTACACT+TGG | 0.600694 | 2.2:-41501342 | MS.gene033967:intron |
TCACCGGCGACAATGGCTAC+CGG | 0.603266 | 2.2:-41506300 | None:intergenic |
ATTGCAGATGACTCCTCAAG+TGG | 0.605254 | 2.2:-41506277 | MS.gene033967:CDS |
GGGAAGATGAGGGAGTGCAA+AGG | 0.614547 | 2.2:-41503407 | MS.gene033967:CDS |
AGAACTCACAGGGAAGATGA+GGG | 0.620040 | 2.2:-41503417 | MS.gene033967:CDS |
AAAGATATTAGAGATATCCC+AGG | 0.626294 | 2.2:-41498232 | MS.gene033967:CDS |
GCTGTTTGTTCACTTCTGGG+GGG | 0.641159 | 2.2:+41502914 | None:intergenic |
AAATGCTGGGACGAAGACGA+TGG | 0.653074 | 2.2:-41499250 | MS.gene033967:CDS |
GCATACAAAAGCCTCCTGGT+CGG | 0.681321 | 2.2:+41498193 | None:intergenic |
ACCAGCTGGAAGAACTCACA+GGG | 0.683376 | 2.2:-41503427 | MS.gene033967:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr2.2 | gene | 41498180 | 41506310 | 41498180 | ID=MS.gene033967 |
chr2.2 | mRNA | 41498180 | 41506310 | 41498180 | ID=MS.gene033967.t1;Parent=MS.gene033967 |
chr2.2 | exon | 41506234 | 41506310 | 41506234 | ID=MS.gene033967.t1.exon1;Parent=MS.gene033967.t1 |
chr2.2 | CDS | 41506234 | 41506310 | 41506234 | ID=cds.MS.gene033967.t1;Parent=MS.gene033967.t1 |
chr2.2 | exon | 41503407 | 41503499 | 41503407 | ID=MS.gene033967.t1.exon2;Parent=MS.gene033967.t1 |
chr2.2 | CDS | 41503407 | 41503499 | 41503407 | ID=cds.MS.gene033967.t1;Parent=MS.gene033967.t1 |
chr2.2 | exon | 41502891 | 41502984 | 41502891 | ID=MS.gene033967.t1.exon3;Parent=MS.gene033967.t1 |
chr2.2 | CDS | 41502891 | 41502984 | 41502891 | ID=cds.MS.gene033967.t1;Parent=MS.gene033967.t1 |
chr2.2 | exon | 41501647 | 41501684 | 41501647 | ID=MS.gene033967.t1.exon4;Parent=MS.gene033967.t1 |
chr2.2 | CDS | 41501647 | 41501684 | 41501647 | ID=cds.MS.gene033967.t1;Parent=MS.gene033967.t1 |
chr2.2 | exon | 41501262 | 41501359 | 41501262 | ID=MS.gene033967.t1.exon5;Parent=MS.gene033967.t1 |
chr2.2 | CDS | 41501262 | 41501359 | 41501262 | ID=cds.MS.gene033967.t1;Parent=MS.gene033967.t1 |
chr2.2 | exon | 41499215 | 41499294 | 41499215 | ID=MS.gene033967.t1.exon6;Parent=MS.gene033967.t1 |
chr2.2 | CDS | 41499215 | 41499294 | 41499215 | ID=cds.MS.gene033967.t1;Parent=MS.gene033967.t1 |
chr2.2 | exon | 41499087 | 41499143 | 41499087 | ID=MS.gene033967.t1.exon7;Parent=MS.gene033967.t1 |
chr2.2 | CDS | 41499087 | 41499143 | 41499087 | ID=cds.MS.gene033967.t1;Parent=MS.gene033967.t1 |
chr2.2 | exon | 41498894 | 41498986 | 41498894 | ID=MS.gene033967.t1.exon8;Parent=MS.gene033967.t1 |
chr2.2 | CDS | 41498894 | 41498986 | 41498894 | ID=cds.MS.gene033967.t1;Parent=MS.gene033967.t1 |
chr2.2 | exon | 41498733 | 41498807 | 41498733 | ID=MS.gene033967.t1.exon9;Parent=MS.gene033967.t1 |
chr2.2 | CDS | 41498733 | 41498807 | 41498733 | ID=cds.MS.gene033967.t1;Parent=MS.gene033967.t1 |
chr2.2 | exon | 41498180 | 41498272 | 41498180 | ID=MS.gene033967.t1.exon10;Parent=MS.gene033967.t1 |
chr2.2 | CDS | 41498180 | 41498272 | 41498180 | ID=cds.MS.gene033967.t1;Parent=MS.gene033967.t1 |
Gene Sequence |
Protein sequence |