Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene61249.t1 | XP_013457561.1 | 99.6 | 263 | 1 | 0 | 1 | 263 | 1 | 263 | 4.20E-135 | 490.7 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene61249.t1 | Q944A9 | 72.2 | 266 | 68 | 3 | 1 | 262 | 1 | 264 | 1.2e-98 | 360.9 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene61249.t1 | A0A072UPG8 | 99.6 | 263 | 1 | 0 | 1 | 263 | 1 | 263 | 3.0e-135 | 490.7 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049887 | MS.gene61249 | 0.807404 | 5.14E-50 | -1.69E-46 |
| MS.gene051885 | MS.gene61249 | 0.844172 | 8.91E-59 | -1.69E-46 |
| MS.gene053144 | MS.gene61249 | 0.808097 | 3.66E-50 | -1.69E-46 |
| MS.gene055764 | MS.gene61249 | 0.816171 | 6.34E-52 | -1.69E-46 |
| MS.gene058720 | MS.gene61249 | 0.81289 | 3.38E-51 | -1.69E-46 |
| MS.gene058852 | MS.gene61249 | 0.809539 | 1.80E-50 | -1.69E-46 |
| MS.gene059171 | MS.gene61249 | 0.814519 | 1.48E-51 | -1.69E-46 |
| MS.gene061007 | MS.gene61249 | 0.829868 | 4.05E-55 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene26787 | MS.gene61249 | PPI |
| MS.gene030153 | MS.gene61249 | PPI |
| MS.gene033967 | MS.gene61249 | PPI |
| MS.gene61249 | MS.gene064149 | PPI |
| MS.gene61249 | MS.gene68624 | PPI |
| MS.gene61249 | MS.gene062046 | PPI |
| MS.gene61249 | MS.gene068930 | PPI |
| MS.gene98405 | MS.gene61249 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene61249.t1 | MTR_4g099140 | 99.620 | 263 | 1 | 0 | 1 | 263 | 1 | 263 | 0.0 | 533 |
| MS.gene61249.t1 | MTR_2g045960 | 65.370 | 257 | 84 | 2 | 7 | 260 | 7 | 261 | 2.40e-110 | 319 |
| MS.gene61249.t1 | MTR_4g123910 | 64.202 | 257 | 87 | 2 | 7 | 260 | 7 | 261 | 2.74e-105 | 306 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene61249.t1 | AT2G35190 | 75.564 | 266 | 59 | 3 | 1 | 262 | 1 | 264 | 3.04e-135 | 382 |
| MS.gene61249.t1 | AT3G17440 | 63.953 | 258 | 87 | 2 | 7 | 260 | 7 | 262 | 1.10e-107 | 313 |
| MS.gene61249.t1 | AT1G48240 | 63.178 | 258 | 89 | 2 | 7 | 260 | 7 | 262 | 4.31e-106 | 308 |
| MS.gene61249.t1 | AT1G48240 | 63.380 | 213 | 72 | 2 | 52 | 260 | 1 | 211 | 3.14e-84 | 251 |
| MS.gene61249.t1 | AT3G17440 | 61.353 | 207 | 76 | 1 | 7 | 209 | 7 | 213 | 4.17e-84 | 251 |
Find 49 sgRNAs with CRISPR-Local
Find 225 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTCTTCTGTGTCGCCTTCAT+TGG | 0.242708 | 8.2:-23024632 | None:intergenic |
| TCAGAAGCTGGAGAAAATTA+AGG | 0.285108 | 8.2:+23023441 | MS.gene61249:CDS |
| AAGCCATTGAGAGGGGAAAA+AGG | 0.306993 | 8.2:+23025493 | MS.gene61249:CDS |
| GTTCAAGACACGGTAAATAT+TGG | 0.323026 | 8.2:+23026412 | MS.gene61249:CDS |
| TATAAAGAAAGCATCTAAAT+TGG | 0.326069 | 8.2:+23026616 | MS.gene61249:CDS |
| TAAAGAAGTCAAAGCTTTAG+AGG | 0.333294 | 8.2:+23024207 | MS.gene61249:CDS |
| TGCTACTGACAAGTGTATTA+TGG | 0.366980 | 8.2:+23026758 | MS.gene61249:CDS |
| CTTCTGTTGTTCGTGACAAC+AGG | 0.367521 | 8.2:-23027477 | None:intergenic |
| AAGGACATTCGCGACATTCC+AGG | 0.392891 | 8.2:+23027444 | MS.gene61249:CDS |
| TGAGACTGCTGCAGCTCTTA+AGG | 0.393912 | 8.2:+23026438 | MS.gene61249:CDS |
| TCGCGAATGTCCTTGTTCTC+TGG | 0.411929 | 8.2:-23027435 | None:intergenic |
| TCTTCTGTGTCGCCTTCATT+GGG | 0.414766 | 8.2:-23024631 | None:intergenic |
| TCTAAATTGGTCAAGGAAAT+CGG | 0.417319 | 8.2:+23026629 | MS.gene61249:CDS |
| GTCGGCGATCAGCGAGGATC+TGG | 0.427072 | 8.2:+23023267 | MS.gene61249:CDS |
| TAAGCGAATTGAACTCTTTG+AGG | 0.435458 | 8.2:+23024606 | MS.gene61249:CDS |
| AATGTCAAATGAACAGCTAA+TGG | 0.436817 | 8.2:+23025437 | MS.gene61249:CDS |
| GAAAATGTCTTGCTAGCTTC+CGG | 0.447441 | 8.2:+23024652 | MS.gene61249:CDS |
| AATGAACAGCTAATGGATCA+TGG | 0.468547 | 8.2:+23025444 | MS.gene61249:CDS |
| AGAAAATGCGAGAGTGTAAA+GGG | 0.476625 | 8.2:+23023503 | MS.gene61249:CDS |
| CGATAGAGCGCGGAAATTGT+CGG | 0.478777 | 8.2:-23023311 | None:intergenic |
| CGAACAACAGAAGACTGCTT+TGG | 0.487369 | 8.2:+23027487 | MS.gene61249:CDS |
| AGCTAATGGATCATGGGAAT+CGG | 0.490306 | 8.2:+23025451 | MS.gene61249:CDS |
| AATTGCTATCATTATTGTAA+AGG | 0.494738 | 8.2:+23026809 | MS.gene61249:CDS |
| GAGAAAATGCGAGAGTGTAA+AGG | 0.497667 | 8.2:+23023502 | MS.gene61249:CDS |
| AAGCGAATTGAACTCTTTGA+GGG | 0.501546 | 8.2:+23024607 | MS.gene61249:CDS |
| CTCTTTGAGGGACCCAATGA+AGG | 0.509954 | 8.2:+23024619 | MS.gene61249:CDS |
| CAGAAATGGATTTCAGAAGC+TGG | 0.516653 | 8.2:+23023429 | MS.gene61249:intron |
| ACAACAGGAGGAGCTAATCC+TGG | 0.528610 | 8.2:-23027462 | None:intergenic |
| GAGTAGAAAGAGCAGGCAAT+TGG | 0.528613 | 8.2:+23023468 | MS.gene61249:CDS |
| GAGCAGAGTTGTCAATGAGC+TGG | 0.530134 | 8.2:+23026577 | MS.gene61249:CDS |
| TGCTGCAGCTCTTAAGGCAC+AGG | 0.531146 | 8.2:+23026444 | MS.gene61249:CDS |
| ATGAACAGCTAATGGATCAT+GGG | 0.537163 | 8.2:+23025445 | MS.gene61249:CDS |
| GTTGAAAATGGATCAGTTGT+CGG | 0.540328 | 8.2:+23023249 | None:intergenic |
| GGTCAAGGAAATCGGTAGGC+AGG | 0.545431 | 8.2:+23026637 | MS.gene61249:CDS |
| GAGGATCTGGCGGAGATCGA+CGG | 0.558067 | 8.2:+23023280 | MS.gene61249:CDS |
| GGATCATGGGAATCGGATGA+TGG | 0.561416 | 8.2:+23025458 | MS.gene61249:CDS |
| GAAAGCATCTAAATTGGTCA+AGG | 0.580083 | 8.2:+23026622 | MS.gene61249:CDS |
| ACACAGATCAAGCCATTGAG+AGG | 0.592198 | 8.2:+23025484 | MS.gene61249:CDS |
| CACAGATCAAGCCATTGAGA+GGG | 0.597880 | 8.2:+23025485 | MS.gene61249:CDS |
| CTGTTGTTCGTGACAACAGG+AGG | 0.605031 | 8.2:-23027474 | None:intergenic |
| GGCGATCAGCGAGGATCTGG+CGG | 0.606362 | 8.2:+23023270 | MS.gene61249:CDS |
| GCTTGTACATCCAGAGAACA+AGG | 0.635136 | 8.2:+23027425 | MS.gene61249:intron |
| AGGATGCGAGTAGAAAGAGC+AGG | 0.636628 | 8.2:+23023461 | MS.gene61249:CDS |
| AATTGGTCAAGGAAATCGGT+AGG | 0.642065 | 8.2:+23026633 | MS.gene61249:CDS |
| GCAATAGATTGTTCAAGACA+CGG | 0.645457 | 8.2:+23026402 | MS.gene61249:intron |
| TAGATTCTTACGATAGAGCG+CGG | 0.658099 | 8.2:-23023321 | None:intergenic |
| CAATTACTCCAATGACGATG+AGG | 0.668385 | 8.2:-23026791 | None:intergenic |
| ACAGATCAAGCCATTGAGAG+GGG | 0.669219 | 8.2:+23025486 | MS.gene61249:CDS |
| TCAGTTGTCGGCGATCAGCG+AGG | 0.738571 | 8.2:+23023261 | MS.gene61249:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAAAAAATAGTGATATTCA+AGG | - | chr8.2:23025530-23025549 | None:intergenic | 15.0% |
| !! | AAATTGTCATAAGATATTTA+CGG | - | chr8.2:23025828-23025847 | None:intergenic | 15.0% |
| !! | CACTTTATATTTAGTAATTT+AGG | + | chr8.2:23024792-23024811 | MS.gene61249:intron | 15.0% |
| !! | TGATTGTATAAAATTTATTC+TGG | + | chr8.2:23023745-23023764 | MS.gene61249:intron | 15.0% |
| !! | TTAATATTAAAAGCAGAAAT+AGG | - | chr8.2:23025237-23025256 | None:intergenic | 15.0% |
| !!! | AAAAAGTATGTATGTAAAAA+AGG | - | chr8.2:23025128-23025147 | None:intergenic | 15.0% |
| !!! | ATTCTTTAATTTAAATGAGA+AGG | - | chr8.2:23025874-23025893 | None:intergenic | 15.0% |
| !!! | CTGTTTTCAATAATTTTAAA+AGG | + | chr8.2:23024043-23024062 | MS.gene61249:intron | 15.0% |
| !!! | TTATTATGTTGAAATTTTCT+CGG | + | chr8.2:23027109-23027128 | MS.gene61249:intron | 15.0% |
| !!! | TTTCTATATTTTGTTTTCAA+AGG | + | chr8.2:23026068-23026087 | MS.gene61249:intron | 15.0% |
| !! | AAAACAGAGTTATTTATGTT+TGG | - | chr8.2:23024030-23024049 | None:intergenic | 20.0% |
| !! | AATGATTCATAAAGTAAGTT+AGG | - | chr8.2:23026704-23026723 | None:intergenic | 20.0% |
| !! | AATTGCTATCATTATTGTAA+AGG | + | chr8.2:23026809-23026828 | MS.gene61249:CDS | 20.0% |
| !! | AGCTTAAATAAACTTGATAT+TGG | + | chr8.2:23025979-23025998 | MS.gene61249:intron | 20.0% |
| !! | ATACATACATAAACTAAAAG+CGG | - | chr8.2:23027087-23027106 | None:intergenic | 20.0% |
| !! | ATATTTAGTAATTTAGGCAA+TGG | + | chr8.2:23024798-23024817 | MS.gene61249:intron | 20.0% |
| !! | ATGCTTTCTTTATAGAAAAA+TGG | - | chr8.2:23026610-23026629 | None:intergenic | 20.0% |
| !! | CAGTTAGTTAAGAAAATATA+TGG | + | chr8.2:23025673-23025692 | MS.gene61249:intron | 20.0% |
| !! | TAAACAGATTAAATCTTCTT+TGG | - | chr8.2:23025377-23025396 | None:intergenic | 20.0% |
| !! | TAATCTAGTGTATATATTGT+TGG | + | chr8.2:23024151-23024170 | MS.gene61249:intron | 20.0% |
| !! | TATCATTATTGTAAAGGTAA+GGG | + | chr8.2:23026815-23026834 | MS.gene61249:intron | 20.0% |
| !! | TATTTCATGTGGATAAAATT+TGG | + | chr8.2:23026344-23026363 | MS.gene61249:intron | 20.0% |
| !! | TTGTATATGAATAAAAAGCA+AGG | - | chr8.2:23025960-23025979 | None:intergenic | 20.0% |
| !!! | AAAAAAACTTGATTTTGACA+TGG | + | chr8.2:23026511-23026530 | MS.gene61249:intron | 20.0% |
| !!! | AAAAAACTTGATTTTGACAT+GGG | + | chr8.2:23026512-23026531 | MS.gene61249:intron | 20.0% |
| !!! | AAAATCAAGTTTTTTTTCCT+TGG | - | chr8.2:23026507-23026526 | None:intergenic | 20.0% |
| !!! | AAATGAAATACAAGCTATTT+TGG | + | chr8.2:23025338-23025357 | MS.gene61249:intron | 20.0% |
| !!! | AAATTTGCTTTCTAACTTTT+TGG | + | chr8.2:23026838-23026857 | MS.gene61249:intron | 20.0% |
| !!! | ACTTCATGTTTTAAGTTTAT+TGG | + | chr8.2:23024349-23024368 | MS.gene61249:intron | 20.0% |
| !!! | AGTTAAAAATACCTGTATTT+TGG | + | chr8.2:23025284-23025303 | MS.gene61249:intron | 20.0% |
| !!! | ATTTAATCTGTTTACCATTT+TGG | + | chr8.2:23025383-23025402 | MS.gene61249:intron | 20.0% |
| !!! | CTTTTTCTCATTCAAAAATT+TGG | - | chr8.2:23024254-23024273 | None:intergenic | 20.0% |
| !!! | TATAAAGAAAGCATCTAAAT+TGG | + | chr8.2:23026616-23026635 | MS.gene61249:CDS | 20.0% |
| !!! | TTGATTTTTTTGTTCAGAAA+TGG | + | chr8.2:23023415-23023434 | MS.gene61249:intron | 20.0% |
| !!! | TTTTAGCTTAGAAACAATTT+TGG | + | chr8.2:23023914-23023933 | MS.gene61249:intron | 20.0% |
| ! | AAAAATCACATTGATCTTTC+AGG | - | chr8.2:23023678-23023697 | None:intergenic | 25.0% |
| ! | AAAGACCATATATTACTTGA+AGG | - | chr8.2:23025737-23025756 | None:intergenic | 25.0% |
| ! | AACATGAAGTAGCAAAATTA+AGG | - | chr8.2:23024339-23024358 | None:intergenic | 25.0% |
| ! | AAGTTAAAAGTCAATTGTAG+AGG | + | chr8.2:23023878-23023897 | MS.gene61249:intron | 25.0% |
| ! | AATCAGTAAAATAAGCAGTT+TGG | - | chr8.2:23027340-23027359 | None:intergenic | 25.0% |
| ! | ACATGAAGTAGCAAAATTAA+GGG | - | chr8.2:23024338-23024357 | None:intergenic | 25.0% |
| ! | ACTTCTGCATTATTTCATAT+TGG | + | chr8.2:23024995-23025014 | MS.gene61249:intron | 25.0% |
| ! | AGGTAAAAGTGATATATGTT+CGG | + | chr8.2:23023787-23023806 | MS.gene61249:intron | 25.0% |
| ! | ATAAATCAAGCATAACAAGA+AGG | - | chr8.2:23024870-23024889 | None:intergenic | 25.0% |
| ! | ATATGAATAAAAAGCAAGGT+TGG | - | chr8.2:23025956-23025975 | None:intergenic | 25.0% |
| ! | ATTGGATTATTGCTAAATCA+TGG | + | chr8.2:23025997-23026016 | MS.gene61249:intron | 25.0% |
| ! | CTAGTGAAATAAAATGATCA+TGG | - | chr8.2:23024750-23024769 | None:intergenic | 25.0% |
| ! | CTATCATTATTGTAAAGGTA+AGG | + | chr8.2:23026814-23026833 | MS.gene61249:intron | 25.0% |
| ! | CTTCTGCATTATTTCATATT+GGG | + | chr8.2:23024996-23025015 | MS.gene61249:intron | 25.0% |
| ! | GAGAACTGAAAAATACTAAA+TGG | + | chr8.2:23026281-23026300 | MS.gene61249:intron | 25.0% |
| ! | GGATGCATTTATATAAAAGT+GGG | + | chr8.2:23023808-23023827 | MS.gene61249:intron | 25.0% |
| ! | TATGAATAAAAAGCAAGGTT+GGG | - | chr8.2:23025955-23025974 | None:intergenic | 25.0% |
| ! | TATGTTTGTGTTTGATTATG+TGG | + | chr8.2:23023697-23023716 | MS.gene61249:intron | 25.0% |
| ! | TTTGACCTTCAAGTAATATA+TGG | + | chr8.2:23025729-23025748 | MS.gene61249:intron | 25.0% |
| !! | AAATTACTTCCGACTTTTAA+AGG | - | chr8.2:23025317-23025336 | None:intergenic | 25.0% |
| !! | TGCAATTGTGGTTTAATTTA+AGG | - | chr8.2:23026207-23026226 | None:intergenic | 25.0% |
| !! | TTGATTGTTTGATTCCATTT+TGG | + | chr8.2:23024066-23024085 | MS.gene61249:intron | 25.0% |
| !!! | CATGATCATTTTATTTCACT+AGG | + | chr8.2:23024748-23024767 | MS.gene61249:intron | 25.0% |
| !!! | GTTTACCATTTTGGTTAATT+TGG | + | chr8.2:23025392-23025411 | MS.gene61249:intron | 25.0% |
| !!! | TACTCCTTTAGAATCAATTT+AGG | + | chr8.2:23023987-23024006 | MS.gene61249:intron | 25.0% |
| !!! | TAGTATTTTATTTGTCCTAG+AGG | + | chr8.2:23025594-23025613 | MS.gene61249:intron | 25.0% |
| !!! | TTCTTGAATCTAGTTTTACA+AGG | - | chr8.2:23027305-23027324 | None:intergenic | 25.0% |
| AAGTAAGCAAGCATAATATG+TGG | - | chr8.2:23025634-23025653 | None:intergenic | 30.0% | |
| AATGTCAAATGAACAGCTAA+TGG | + | chr8.2:23025437-23025456 | MS.gene61249:CDS | 30.0% | |
| AATTTAGGCTCATCTAAAAG+TGG | + | chr8.2:23024002-23024021 | MS.gene61249:intron | 30.0% | |
| ATCATGGAATCAGTGAAATA+AGG | + | chr8.2:23026013-23026032 | MS.gene61249:intron | 30.0% | |
| ATGCTCCAAATTAACCAAAA+TGG | - | chr8.2:23025400-23025419 | None:intergenic | 30.0% | |
| ATTAAATCTTCTTTGGTCAG+TGG | - | chr8.2:23025370-23025389 | None:intergenic | 30.0% | |
| ATTCTGTTGTCTATTTCATG+TGG | + | chr8.2:23026333-23026352 | MS.gene61249:intron | 30.0% | |
| ATTTCTACCATAGGTAAACA+TGG | - | chr8.2:23026929-23026948 | None:intergenic | 30.0% | |
| CATGAAGTAGCAAAATTAAG+GGG | - | chr8.2:23024337-23024356 | None:intergenic | 30.0% | |
| CATTATTTCATATTGGGAGA+TGG | + | chr8.2:23025002-23025021 | MS.gene61249:intron | 30.0% | |
| CGGATGCATTTATATAAAAG+TGG | + | chr8.2:23023807-23023826 | MS.gene61249:intron | 30.0% | |
| CTATACTGAACAAAATGATG+TGG | - | chr8.2:23026679-23026698 | None:intergenic | 30.0% | |
| GAACAAAATGAGAGATTCTA+AGG | - | chr8.2:23024498-23024517 | None:intergenic | 30.0% | |
| GACGGTACTAAATAAACAAT+AGG | - | chr8.2:23025791-23025810 | None:intergenic | 30.0% | |
| GGCGTTTACAAAAAGAAAAT+TGG | - | chr8.2:23027265-23027284 | None:intergenic | 30.0% | |
| GTACTTCATGGTGAATTTAT+TGG | + | chr8.2:23026891-23026910 | MS.gene61249:intron | 30.0% | |
| TCTAAATTGGTCAAGGAAAT+CGG | + | chr8.2:23026629-23026648 | MS.gene61249:CDS | 30.0% | |
| TGTTTCAGCTATTGTTTGAA+GGG | + | chr8.2:23025205-23025224 | MS.gene61249:intron | 30.0% | |
| TTAGAGCACAATTTAATTGC+TGG | + | chr8.2:23025699-23025718 | MS.gene61249:intron | 30.0% | |
| TTGAACAATCTATTGCAGAA+GGG | - | chr8.2:23026398-23026417 | None:intergenic | 30.0% | |
| TTTCCAAATACATAGACTAC+TGG | + | chr8.2:23025553-23025572 | MS.gene61249:intron | 30.0% | |
| ! | AAACTCTATTCAGTGCTTTT+TGG | + | chr8.2:23027172-23027191 | MS.gene61249:intron | 30.0% |
| ! | AATAAGGATGAAAAAGTGTG+AGG | + | chr8.2:23026029-23026048 | MS.gene61249:intron | 30.0% |
| ! | CTACTCAATTTAAGACTACA+AGG | - | chr8.2:23026119-23026138 | None:intergenic | 30.0% |
| ! | CTTGATGTTGTTCGTTTTAT+TGG | + | chr8.2:23023592-23023611 | MS.gene61249:intron | 30.0% |
| ! | TAAAGAAGTCAAAGCTTTAG+AGG | + | chr8.2:23024207-23024226 | MS.gene61249:CDS | 30.0% |
| ! | TGAGCCTAAATTGATTCTAA+AGG | - | chr8.2:23023994-23024013 | None:intergenic | 30.0% |
| ! | TTTTTGTCAAACTGTTGTCT+TGG | + | chr8.2:23025759-23025778 | MS.gene61249:intron | 30.0% |
| !! | AACTCTATTCAGTGCTTTTT+GGG | + | chr8.2:23027173-23027192 | MS.gene61249:intron | 30.0% |
| !! | AGTTACTCAGTTTTTAGACA+AGG | + | chr8.2:23024832-23024851 | MS.gene61249:intron | 30.0% |
| !! | CATTGATCTTTCAGGTTAAT+AGG | - | chr8.2:23023670-23023689 | None:intergenic | 30.0% |
| !! | GGTGTTTGATTTGAATATTC+TGG | + | chr8.2:23026302-23026321 | MS.gene61249:intron | 30.0% |
| !!! | GCTGAAAATGAGTTGATTTT+AGG | + | chr8.2:23023767-23023786 | MS.gene61249:intron | 30.0% |
| !!! | TTGTTGGATCTGTTTTTTTC+AGG | + | chr8.2:23024167-23024186 | MS.gene61249:intron | 30.0% |
| AAAAGCGGTAAATCTGTGAA+AGG | - | chr8.2:23027072-23027091 | None:intergenic | 35.0% | |
| AAGCGAATTGAACTCTTTGA+GGG | + | chr8.2:23024607-23024626 | MS.gene61249:CDS | 35.0% | |
| AATAAAAAGCAAGGTTGGGA+AGG | - | chr8.2:23025951-23025970 | None:intergenic | 35.0% | |
| AATTACCATGATTAGTGGTC+TGG | + | chr8.2:23024119-23024138 | MS.gene61249:intron | 35.0% | |
| ACTGTACATCAAACTTCTAG+AGG | - | chr8.2:23026248-23026267 | None:intergenic | 35.0% | |
| ATAACAAGAAGGTAGAAGCA+CGG | - | chr8.2:23024859-23024878 | None:intergenic | 35.0% | |
| ATGAAGTACAGCAACAATAG+AGG | - | chr8.2:23026880-23026899 | None:intergenic | 35.0% | |
| ATTGTGACTGTATGTATGAG+CGG | + | chr8.2:23024922-23024941 | MS.gene61249:intron | 35.0% | |
| CATGAGACAGAAATTTGAAG+GGG | - | chr8.2:23023372-23023391 | None:intergenic | 35.0% | |
| CCACTAATCATGGTAATTCA+AGG | - | chr8.2:23024117-23024136 | None:intergenic | 35.0% | |
| CCTTGAATTACCATGATTAG+TGG | + | chr8.2:23024114-23024133 | MS.gene61249:intron | 35.0% | |
| CTGTTTCAGCTATTGTTTGA+AGG | + | chr8.2:23025204-23025223 | MS.gene61249:intron | 35.0% | |
| CTTGAACAATCTATTGCAGA+AGG | - | chr8.2:23026399-23026418 | None:intergenic | 35.0% | |
| GAATGAGAAAAAGCAGTCAA+TGG | + | chr8.2:23024261-23024280 | MS.gene61249:CDS | 35.0% | |
| GCAATAGATTGTTCAAGACA+CGG | + | chr8.2:23026402-23026421 | MS.gene61249:intron | 35.0% | |
| GCATGAGACAGAAATTTGAA+GGG | - | chr8.2:23023373-23023392 | None:intergenic | 35.0% | |
| GTAATTCAAGGATCAAAGCT+TGG | - | chr8.2:23024105-23024124 | None:intergenic | 35.0% | |
| GTCAAAGCAATTTCTACCAT+AGG | - | chr8.2:23026938-23026957 | None:intergenic | 35.0% | |
| GTTCAAGACACGGTAAATAT+TGG | + | chr8.2:23026412-23026431 | MS.gene61249:CDS | 35.0% | |
| GTTTCAGCTATTGTTTGAAG+GGG | + | chr8.2:23025206-23025225 | MS.gene61249:intron | 35.0% | |
| TAAGCGAATTGAACTCTTTG+AGG | + | chr8.2:23024606-23024625 | MS.gene61249:CDS | 35.0% | |
| TACAAGGTAAACTGAAACCA+AGG | - | chr8.2:23027289-23027308 | None:intergenic | 35.0% | |
| TCACCAGTAGTCTATGTATT+TGG | - | chr8.2:23025559-23025578 | None:intergenic | 35.0% | |
| TCAGAAGCTGGAGAAAATTA+AGG | + | chr8.2:23023441-23023460 | MS.gene61249:CDS | 35.0% | |
| TCATTTGTTCCGTCTACAAA+AGG | - | chr8.2:23026559-23026578 | None:intergenic | 35.0% | |
| TCTAGAAGTTTGATGTACAG+TGG | + | chr8.2:23026247-23026266 | MS.gene61249:intron | 35.0% | |
| TCTATTGTTGCTGTACTTCA+TGG | + | chr8.2:23026879-23026898 | MS.gene61249:intron | 35.0% | |
| TGAAGGGGAAATCAAAACAA+TGG | - | chr8.2:23023357-23023376 | None:intergenic | 35.0% | |
| TGAAGTACAGCAACAATAGA+GGG | - | chr8.2:23026879-23026898 | None:intergenic | 35.0% | |
| TGCATGAGACAGAAATTTGA+AGG | - | chr8.2:23023374-23023393 | None:intergenic | 35.0% | |
| TGCTACTGACAAGTGTATTA+TGG | + | chr8.2:23026758-23026777 | MS.gene61249:CDS | 35.0% | |
| TGTTATACATACACCTCCTT+GGG | + | chr8.2:23026145-23026164 | MS.gene61249:intron | 35.0% | |
| TTGTTATACATACACCTCCT+TGG | + | chr8.2:23026144-23026163 | MS.gene61249:intron | 35.0% | |
| TTTCAGCTATTGTTTGAAGG+GGG | + | chr8.2:23025207-23025226 | MS.gene61249:intron | 35.0% | |
| ! | AATGAACAGCTAATGGATCA+TGG | + | chr8.2:23025444-23025463 | MS.gene61249:CDS | 35.0% |
| ! | AATGGTAAGATGTTTAGCTC+TGG | + | chr8.2:23024279-23024298 | MS.gene61249:intron | 35.0% |
| ! | AGAAAATGCGAGAGTGTAAA+GGG | + | chr8.2:23023503-23023522 | MS.gene61249:CDS | 35.0% |
| ! | AGATCATAGAAGTGTGAGAA+AGG | - | chr8.2:23025101-23025120 | None:intergenic | 35.0% |
| ! | ATATTTTCCACATGTACCCA+AGG | - | chr8.2:23026164-23026183 | None:intergenic | 35.0% |
| ! | ATGAACAGCTAATGGATCAT+GGG | + | chr8.2:23025445-23025464 | MS.gene61249:CDS | 35.0% |
| ! | CTTACTTGTTGATGCTATCA+AGG | - | chr8.2:23024541-23024560 | None:intergenic | 35.0% |
| ! | CTTGCTCGCATTTTTGTAAT+AGG | + | chr8.2:23026734-23026753 | MS.gene61249:intron | 35.0% |
| ! | GAGATTCTAAGGAAGCAAAA+TGG | - | chr8.2:23024487-23024506 | None:intergenic | 35.0% |
| ! | TAACCTCTTCCTTTTGTAGA+CGG | + | chr8.2:23026547-23026566 | MS.gene61249:intron | 35.0% |
| ! | TCATTTTGTTCTTGCTTGAG+TGG | + | chr8.2:23024507-23024526 | MS.gene61249:intron | 35.0% |
| ! | TTTACACTCTCGCATTTTCT+CGG | - | chr8.2:23023503-23023522 | None:intergenic | 35.0% |
| ! | TTTTTCCTTGGACTACTTCT+GGG | - | chr8.2:23026495-23026514 | None:intergenic | 35.0% |
| !! | GAAAGCATCTAAATTGGTCA+AGG | + | chr8.2:23026622-23026641 | MS.gene61249:CDS | 35.0% |
| !! | GATTTTGACATGGGTACTAA+GGG | + | chr8.2:23026521-23026540 | MS.gene61249:intron | 35.0% |
| !! | GTTTGATTCCATTTTGGCAT+TGG | + | chr8.2:23024072-23024091 | MS.gene61249:intron | 35.0% |
| !! | TGATTTTGACATGGGTACTA+AGG | + | chr8.2:23026520-23026539 | MS.gene61249:intron | 35.0% |
| !! | TTACTTTTCCTCATCGTCAT+TGG | + | chr8.2:23026783-23026802 | MS.gene61249:CDS | 35.0% |
| !!! | CTTTTTGGGTTGTTAACAGA+CGG | + | chr8.2:23027187-23027206 | MS.gene61249:intron | 35.0% |
| !!! | TTTTTTCCTTGGACTACTTC+TGG | - | chr8.2:23026496-23026515 | None:intergenic | 35.0% |
| AAGGTAAACTGAAACCAAGG+TGG | - | chr8.2:23027286-23027305 | None:intergenic | 40.0% | |
| AAGGTTGACAGCCAAAATAC+AGG | - | chr8.2:23025298-23025317 | None:intergenic | 40.0% | |
| AATTGGTCAAGGAAATCGGT+AGG | + | chr8.2:23026633-23026652 | MS.gene61249:CDS | 40.0% | |
| AGATGTGCCATGTTTACCTA+TGG | + | chr8.2:23026919-23026938 | MS.gene61249:intron | 40.0% | |
| AGGGGAAATCAAAACAATGG+AGG | - | chr8.2:23023354-23023373 | None:intergenic | 40.0% | |
| CAATTACTCCAATGACGATG+AGG | - | chr8.2:23026794-23026813 | None:intergenic | 40.0% | |
| CACTTTCACTGAAACGATTG+AGG | - | chr8.2:23024954-23024973 | None:intergenic | 40.0% | |
| GAAATTGCTTTGACAACACG+TGG | + | chr8.2:23026944-23026963 | MS.gene61249:intron | 40.0% | |
| TAGATTCTTACGATAGAGCG+CGG | - | chr8.2:23023324-23023343 | None:intergenic | 40.0% | |
| TAGGTAAACATGGCACATCT+AGG | - | chr8.2:23026919-23026938 | None:intergenic | 40.0% | |
| TGCTTGATTTATACGACTCG+TGG | + | chr8.2:23024878-23024897 | MS.gene61249:intron | 40.0% | |
| ! | AGCTAATGGATCATGGGAAT+CGG | + | chr8.2:23025451-23025470 | MS.gene61249:CDS | 40.0% |
| ! | CAGAAATGGATTTCAGAAGC+TGG | + | chr8.2:23023429-23023448 | MS.gene61249:intron | 40.0% |
| ! | GAAAATGTCTTGCTAGCTTC+CGG | + | chr8.2:23024652-23024671 | MS.gene61249:CDS | 40.0% |
| ! | GAGAAAATGCGAGAGTGTAA+AGG | + | chr8.2:23023502-23023521 | MS.gene61249:CDS | 40.0% |
| ! | GATGAAAAAGTGTGAGGAAG+TGG | + | chr8.2:23026035-23026054 | MS.gene61249:intron | 40.0% |
| ! | GCACATTTTCAACACAGATC+TGG | - | chr8.2:23023642-23023661 | None:intergenic | 40.0% |
| ! | GGCTGTCAACCTTTAAAAGT+CGG | + | chr8.2:23025305-23025324 | MS.gene61249:intron | 40.0% |
| ! | TAACAAGAAGGTAGAAGCAC+GGG | - | chr8.2:23024858-23024877 | None:intergenic | 40.0% |
| ! | TCACTAGGCATAGCTTTTGA+TGG | + | chr8.2:23027046-23027065 | MS.gene61249:intron | 40.0% |
| ! | TCTTTTTGTAAACGCCACCT+TGG | + | chr8.2:23027269-23027288 | MS.gene61249:intron | 40.0% |
| ! | TTTTCCTTGGACTACTTCTG+GGG | - | chr8.2:23026494-23026513 | None:intergenic | 40.0% |
| !! | AGTGGAGGAGTTCTTTTTCA+TGG | - | chr8.2:23027021-23027040 | None:intergenic | 40.0% |
| AAGAGCCAGACCACTAATCA+TGG | - | chr8.2:23024127-23024146 | None:intergenic | 45.0% | |
| AAGCCATTGAGAGGGGAAAA+AGG | + | chr8.2:23025493-23025512 | MS.gene61249:CDS | 45.0% | |
| ACACAGATCAAGCCATTGAG+AGG | + | chr8.2:23025484-23025503 | MS.gene61249:CDS | 45.0% | |
| ACAGATCAAGCCATTGAGAG+GGG | + | chr8.2:23025486-23025505 | MS.gene61249:CDS | 45.0% | |
| ACGGAAGTAAACTGACGAGA+CGG | - | chr8.2:23025809-23025828 | None:intergenic | 45.0% | |
| AGCCATTGAGAGGGGAAAAA+GGG | + | chr8.2:23025494-23025513 | MS.gene61249:CDS | 45.0% | |
| ATTGAGAGGGGAAAAAGGGT+TGG | + | chr8.2:23025498-23025517 | MS.gene61249:intron | 45.0% | |
| CACAGATCAAGCCATTGAGA+GGG | + | chr8.2:23025485-23025504 | MS.gene61249:CDS | 45.0% | |
| CGAACAACAGAAGACTGCTT+TGG | + | chr8.2:23027487-23027506 | MS.gene61249:CDS | 45.0% | |
| CTATGCCTAGTGAAGACTAG+TGG | - | chr8.2:23027039-23027058 | None:intergenic | 45.0% | |
| CTTCTGTTGTTCGTGACAAC+AGG | - | chr8.2:23027480-23027499 | None:intergenic | 45.0% | |
| GAAGAAGCCAGCATACTTAC+CGG | - | chr8.2:23024674-23024693 | None:intergenic | 45.0% | |
| GAGCTACAACATTTGCCTCT+AGG | - | chr8.2:23025612-23025631 | None:intergenic | 45.0% | |
| GAGTAGAAAGAGCAGGCAAT+TGG | + | chr8.2:23023468-23023487 | MS.gene61249:CDS | 45.0% | |
| GCTTGTACATCCAGAGAACA+AGG | + | chr8.2:23027425-23027444 | MS.gene61249:intron | 45.0% | |
| GGTTGGGAAGGTAATGTTTC+AGG | - | chr8.2:23025939-23025958 | None:intergenic | 45.0% | |
| GTGTGCTTCCAATGCCAAAA+TGG | - | chr8.2:23024083-23024102 | None:intergenic | 45.0% | |
| GTTAACAGACGGTCAAGATC+AGG | + | chr8.2:23027198-23027217 | MS.gene61249:intron | 45.0% | |
| GTTCCGTCTACAAAAGGAAG+AGG | - | chr8.2:23026553-23026572 | None:intergenic | 45.0% | |
| TCTTCTGTGTCGCCTTCATT+GGG | - | chr8.2:23024634-23024653 | None:intergenic | 45.0% | |
| TTCTTCTGTGTCGCCTTCAT+TGG | - | chr8.2:23024635-23024654 | None:intergenic | 45.0% | |
| ! | AAACTTCTAGAGGAGCAGAG+GGG | - | chr8.2:23026238-23026257 | None:intergenic | 45.0% |
| ! | AACCCTTTTTCCCCTCTCAA+TGG | - | chr8.2:23025499-23025518 | None:intergenic | 45.0% |
| ! | CAAACTTCTAGAGGAGCAGA+GGG | - | chr8.2:23026239-23026258 | None:intergenic | 45.0% |
| ! | TCAAACTTCTAGAGGAGCAG+AGG | - | chr8.2:23026240-23026259 | None:intergenic | 45.0% |
| ! | TTTTCCACATGTACCCAAGG+AGG | - | chr8.2:23026161-23026180 | None:intergenic | 45.0% |
| AAGGACATTCGCGACATTCC+AGG | + | chr8.2:23027444-23027463 | MS.gene61249:CDS | 50.0% | |
| ACAACAGGAGGAGCTAATCC+TGG | - | chr8.2:23027465-23027484 | None:intergenic | 50.0% | |
| AGCTATTGTTTGAAGGGGGC+TGG | + | chr8.2:23025211-23025230 | MS.gene61249:intron | 50.0% | |
| AGGATGCGAGTAGAAAGAGC+AGG | + | chr8.2:23023461-23023480 | MS.gene61249:CDS | 50.0% | |
| CGATAGAGCGCGGAAATTGT+CGG | - | chr8.2:23023314-23023333 | None:intergenic | 50.0% | |
| CTAGCTTCCGGTAAGTATGC+TGG | + | chr8.2:23024664-23024683 | MS.gene61249:intron | 50.0% | |
| CTGTTGTTCGTGACAACAGG+AGG | - | chr8.2:23027477-23027496 | None:intergenic | 50.0% | |
| GAGCAGAGTTGTCAATGAGC+TGG | + | chr8.2:23026577-23026596 | MS.gene61249:CDS | 50.0% | |
| GGATCATGGGAATCGGATGA+TGG | + | chr8.2:23025458-23025477 | MS.gene61249:CDS | 50.0% | |
| GTGACTGTATGTATGAGCGG+AGG | + | chr8.2:23024925-23024944 | MS.gene61249:intron | 50.0% | |
| TACACCTCCTTGGGTACATG+TGG | + | chr8.2:23026154-23026173 | MS.gene61249:intron | 50.0% | |
| TCGCGAATGTCCTTGTTCTC+TGG | - | chr8.2:23027438-23027457 | None:intergenic | 50.0% | |
| TGAGACTGCTGCAGCTCTTA+AGG | + | chr8.2:23026438-23026457 | MS.gene61249:CDS | 50.0% | |
| TGCCTAGTGAAGACTAGTGG+AGG | - | chr8.2:23027036-23027055 | None:intergenic | 50.0% | |
| TTCACCCCAGAAGTAGTCCA+AGG | + | chr8.2:23026487-23026506 | MS.gene61249:intron | 50.0% | |
| ! | CTCTTTGAGGGACCCAATGA+AGG | + | chr8.2:23024619-23024638 | MS.gene61249:CDS | 50.0% |
| !! | CTCCTCCACTAGTCTTCACT+AGG | + | chr8.2:23027031-23027050 | MS.gene61249:intron | 50.0% |
| !! | TTGGACTACTTCTGGGGTGA+AGG | - | chr8.2:23026488-23026507 | None:intergenic | 50.0% |
| GGGGACATGGAGTGCAATTG+TGG | - | chr8.2:23026219-23026238 | None:intergenic | 55.0% | |
| GGTCAAGGAAATCGGTAGGC+AGG | + | chr8.2:23026637-23026656 | MS.gene61249:CDS | 55.0% | |
| TGCTGCAGCTCTTAAGGCAC+AGG | + | chr8.2:23026444-23026463 | MS.gene61249:CDS | 55.0% | |
| CTAGAGGAGCAGAGGGGACA+TGG | - | chr8.2:23026232-23026251 | None:intergenic | 60.0% | |
| GAGGATCTGGCGGAGATCGA+CGG | + | chr8.2:23023280-23023299 | MS.gene61249:CDS | 60.0% | |
| TCAGTTGTCGGCGATCAGCG+AGG | + | chr8.2:23023261-23023280 | MS.gene61249:CDS | 60.0% | |
| GGCGATCAGCGAGGATCTGG+CGG | + | chr8.2:23023270-23023289 | MS.gene61249:CDS | 65.0% | |
| GTCGGCGATCAGCGAGGATC+TGG | + | chr8.2:23023267-23023286 | MS.gene61249:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8.2 | gene | 23023256 | 23027530 | 23023256 | ID=MS.gene61249 |
| chr8.2 | mRNA | 23023256 | 23027530 | 23023256 | ID=MS.gene61249.t1;Parent=MS.gene61249 |
| chr8.2 | exon | 23023256 | 23023332 | 23023256 | ID=MS.gene61249.t1.exon1;Parent=MS.gene61249.t1 |
| chr8.2 | CDS | 23023256 | 23023332 | 23023256 | ID=cds.MS.gene61249.t1;Parent=MS.gene61249.t1 |
| chr8.2 | exon | 23023432 | 23023524 | 23023432 | ID=MS.gene61249.t1.exon2;Parent=MS.gene61249.t1 |
| chr8.2 | CDS | 23023432 | 23023524 | 23023432 | ID=cds.MS.gene61249.t1;Parent=MS.gene61249.t1 |
| chr8.2 | exon | 23024189 | 23024282 | 23024189 | ID=MS.gene61249.t1.exon3;Parent=MS.gene61249.t1 |
| chr8.2 | CDS | 23024189 | 23024282 | 23024189 | ID=cds.MS.gene61249.t1;Parent=MS.gene61249.t1 |
| chr8.2 | exon | 23024433 | 23024470 | 23024433 | ID=MS.gene61249.t1.exon4;Parent=MS.gene61249.t1 |
| chr8.2 | CDS | 23024433 | 23024470 | 23024433 | ID=cds.MS.gene61249.t1;Parent=MS.gene61249.t1 |
| chr8.2 | exon | 23024585 | 23024673 | 23024585 | ID=MS.gene61249.t1.exon5;Parent=MS.gene61249.t1 |
| chr8.2 | CDS | 23024585 | 23024673 | 23024585 | ID=cds.MS.gene61249.t1;Parent=MS.gene61249.t1 |
| chr8.2 | exon | 23025436 | 23025515 | 23025436 | ID=MS.gene61249.t1.exon6;Parent=MS.gene61249.t1 |
| chr8.2 | CDS | 23025436 | 23025515 | 23025436 | ID=cds.MS.gene61249.t1;Parent=MS.gene61249.t1 |
| chr8.2 | exon | 23026409 | 23026465 | 23026409 | ID=MS.gene61249.t1.exon7;Parent=MS.gene61249.t1 |
| chr8.2 | CDS | 23026409 | 23026465 | 23026409 | ID=cds.MS.gene61249.t1;Parent=MS.gene61249.t1 |
| chr8.2 | exon | 23026566 | 23026658 | 23026566 | ID=MS.gene61249.t1.exon8;Parent=MS.gene61249.t1 |
| chr8.2 | CDS | 23026566 | 23026658 | 23026566 | ID=cds.MS.gene61249.t1;Parent=MS.gene61249.t1 |
| chr8.2 | exon | 23026756 | 23026830 | 23026756 | ID=MS.gene61249.t1.exon9;Parent=MS.gene61249.t1 |
| chr8.2 | CDS | 23026756 | 23026830 | 23026756 | ID=cds.MS.gene61249.t1;Parent=MS.gene61249.t1 |
| chr8.2 | exon | 23027426 | 23027530 | 23027426 | ID=MS.gene61249.t1.exon10;Parent=MS.gene61249.t1 |
| chr8.2 | CDS | 23027426 | 23027530 | 23027426 | ID=cds.MS.gene61249.t1;Parent=MS.gene61249.t1 |
| Gene Sequence |
| Protein sequence |
