Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene46386.t1 | XP_013457561.1 | 99.6 | 263 | 1 | 0 | 1 | 263 | 1 | 263 | 4.20E-135 | 490.7 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene46386.t1 | Q944A9 | 72.2 | 266 | 68 | 3 | 1 | 262 | 1 | 264 | 1.2e-98 | 360.9 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene46386.t1 | A0A072UPG8 | 99.6 | 263 | 1 | 0 | 1 | 263 | 1 | 263 | 3.0e-135 | 490.7 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049887 | MS.gene46386 | 0.80686 | 6.70E-50 | -1.69E-46 |
| MS.gene051885 | MS.gene46386 | 0.841727 | 3.99E-58 | -1.69E-46 |
| MS.gene053144 | MS.gene46386 | 0.809817 | 1.57E-50 | -1.69E-46 |
| MS.gene058720 | MS.gene46386 | 0.824349 | 8.47E-54 | -1.69E-46 |
| MS.gene058852 | MS.gene46386 | 0.808133 | 3.60E-50 | -1.69E-46 |
| MS.gene059171 | MS.gene46386 | 0.814984 | 1.17E-51 | -1.69E-46 |
| MS.gene061007 | MS.gene46386 | 0.818996 | 1.46E-52 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene98405 | MS.gene46386 | PPI |
| MS.gene030153 | MS.gene46386 | PPI |
| MS.gene26787 | MS.gene46386 | PPI |
| MS.gene033967 | MS.gene46386 | PPI |
| MS.gene064149 | MS.gene46386 | PPI |
| MS.gene068930 | MS.gene46386 | PPI |
| MS.gene46386 | MS.gene68624 | PPI |
| MS.gene062046 | MS.gene46386 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene46386.t1 | MTR_4g099140 | 99.620 | 263 | 1 | 0 | 1 | 263 | 1 | 263 | 0.0 | 533 |
| MS.gene46386.t1 | MTR_2g045960 | 65.370 | 257 | 84 | 2 | 7 | 260 | 7 | 261 | 2.77e-110 | 319 |
| MS.gene46386.t1 | MTR_4g123910 | 64.202 | 257 | 87 | 2 | 7 | 260 | 7 | 261 | 2.57e-105 | 306 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene46386.t1 | AT2G35190 | 75.564 | 266 | 59 | 3 | 1 | 262 | 1 | 264 | 2.79e-135 | 382 |
| MS.gene46386.t1 | AT3G17440 | 62.879 | 264 | 92 | 2 | 7 | 266 | 7 | 268 | 6.66e-108 | 313 |
| MS.gene46386.t1 | AT1G48240 | 63.178 | 258 | 89 | 2 | 7 | 260 | 7 | 262 | 4.86e-106 | 308 |
| MS.gene46386.t1 | AT1G48240 | 63.380 | 213 | 72 | 2 | 52 | 260 | 1 | 211 | 3.35e-84 | 251 |
| MS.gene46386.t1 | AT3G17440 | 61.353 | 207 | 76 | 1 | 7 | 209 | 7 | 213 | 5.14e-84 | 251 |
Find 49 sgRNAs with CRISPR-Local
Find 220 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTCTTCTGTGTCGCCTTCAT+TGG | 0.242708 | 8.4:-23844898 | None:intergenic |
| TCAGAAGCTGGAGAAAATTA+AGG | 0.285108 | 8.4:+23843721 | MS.gene46386:CDS |
| AAGCCATTGAGAGGGGAAAA+AGG | 0.306993 | 8.4:+23845757 | MS.gene46386:CDS |
| GTTCAAGACACGGTAAATAT+TGG | 0.323026 | 8.4:+23846676 | MS.gene46386:CDS |
| TATAAAGAAAGCATCTAAAT+TGG | 0.326069 | 8.4:+23846880 | MS.gene46386:CDS |
| TAAAGAAGTCAAAGCTTTAG+AGG | 0.333294 | 8.4:+23844487 | MS.gene46386:CDS |
| TGCTACTGACAAGTGTATTA+TGG | 0.366980 | 8.4:+23847022 | MS.gene46386:CDS |
| CTTCTGTTGTTCGTGACAAC+AGG | 0.367521 | 8.4:-23847741 | None:intergenic |
| AAGGACATTCGCGACATTCC+AGG | 0.392891 | 8.4:+23847708 | MS.gene46386:CDS |
| TGAGACTGCTGCAGCTCTTA+AGG | 0.393912 | 8.4:+23846702 | MS.gene46386:CDS |
| TCGCGAATGTCCTTGTTCTC+TGG | 0.411929 | 8.4:-23847699 | None:intergenic |
| TCTTCTGTGTCGCCTTCATT+GGG | 0.414766 | 8.4:-23844897 | None:intergenic |
| TCTAAATTGGTCAAGGAAAT+CGG | 0.417319 | 8.4:+23846893 | MS.gene46386:CDS |
| GTCGGCGATCAGCGAGGATC+TGG | 0.427072 | 8.4:+23843547 | MS.gene46386:CDS |
| TAAGCGAATTGAACTCTTTG+AGG | 0.435458 | 8.4:+23844872 | MS.gene46386:CDS |
| AATGTCAAATGAACAGCTAA+TGG | 0.436817 | 8.4:+23845701 | MS.gene46386:CDS |
| GAAAATGTCTTGCTAGCTTC+CGG | 0.447441 | 8.4:+23844918 | MS.gene46386:CDS |
| AATGAACAGCTAATGGATCA+TGG | 0.468547 | 8.4:+23845708 | MS.gene46386:CDS |
| AGAAAATGCGAGAGTGTAAA+GGG | 0.476625 | 8.4:+23843783 | MS.gene46386:CDS |
| CGATAGAGCGCGGAAATTGT+CGG | 0.478777 | 8.4:-23843591 | None:intergenic |
| CGAACAACAGAAGACTGCTT+TGG | 0.487369 | 8.4:+23847751 | MS.gene46386:CDS |
| AGCTAATGGATCATGGGAAT+CGG | 0.490306 | 8.4:+23845715 | MS.gene46386:CDS |
| AATTGCTATCATTATTGTAA+AGG | 0.494738 | 8.4:+23847073 | MS.gene46386:CDS |
| GAGAAAATGCGAGAGTGTAA+AGG | 0.497667 | 8.4:+23843782 | MS.gene46386:CDS |
| AAGCGAATTGAACTCTTTGA+GGG | 0.501546 | 8.4:+23844873 | MS.gene46386:CDS |
| CTCTTTGAGGGACCCAATGA+AGG | 0.509954 | 8.4:+23844885 | MS.gene46386:CDS |
| CAGAAATGGATTTCAGAAGC+TGG | 0.516653 | 8.4:+23843709 | MS.gene46386:intron |
| ACAACAGGAGGAGCTAATCC+TGG | 0.528610 | 8.4:-23847726 | None:intergenic |
| GAGTAGAAAGAGCAGGCAAT+TGG | 0.528613 | 8.4:+23843748 | MS.gene46386:CDS |
| GAGCAGAGTTGTCAATGAGC+TGG | 0.530134 | 8.4:+23846841 | MS.gene46386:CDS |
| TGCTGCAGCTCTTAAGGCAC+AGG | 0.531146 | 8.4:+23846708 | MS.gene46386:CDS |
| ATGAACAGCTAATGGATCAT+GGG | 0.537163 | 8.4:+23845709 | MS.gene46386:CDS |
| GTTGAAAATGGATCAGTTGT+CGG | 0.540328 | 8.4:+23843529 | None:intergenic |
| GGTCAAGGAAATCGGTAGGC+AGG | 0.545431 | 8.4:+23846901 | MS.gene46386:CDS |
| GAGGATCTGGCGGAGATCGA+CGG | 0.558067 | 8.4:+23843560 | MS.gene46386:CDS |
| GGATCATGGGAATCGGATGA+TGG | 0.561416 | 8.4:+23845722 | MS.gene46386:CDS |
| GAAAGCATCTAAATTGGTCA+AGG | 0.580083 | 8.4:+23846886 | MS.gene46386:CDS |
| ACACAGATCAAGCCATTGAG+AGG | 0.592198 | 8.4:+23845748 | MS.gene46386:CDS |
| CACAGATCAAGCCATTGAGA+GGG | 0.597880 | 8.4:+23845749 | MS.gene46386:CDS |
| CTGTTGTTCGTGACAACAGG+AGG | 0.605031 | 8.4:-23847738 | None:intergenic |
| GGCGATCAGCGAGGATCTGG+CGG | 0.606362 | 8.4:+23843550 | MS.gene46386:CDS |
| GCTTGTACATCCAGAGAACA+AGG | 0.635136 | 8.4:+23847689 | MS.gene46386:intron |
| AGGATGCGAGTAGAAAGAGC+AGG | 0.636628 | 8.4:+23843741 | MS.gene46386:CDS |
| AATTGGTCAAGGAAATCGGT+AGG | 0.642065 | 8.4:+23846897 | MS.gene46386:CDS |
| GCAATAGATTGTTCAAGACA+CGG | 0.645457 | 8.4:+23846666 | MS.gene46386:intron |
| TAGATTCTTACGATAGAGCG+CGG | 0.658099 | 8.4:-23843601 | None:intergenic |
| CAATTACTCCAATGACGATG+AGG | 0.668385 | 8.4:-23847055 | None:intergenic |
| ACAGATCAAGCCATTGAGAG+GGG | 0.669219 | 8.4:+23845750 | MS.gene46386:CDS |
| TCAGTTGTCGGCGATCAGCG+AGG | 0.738571 | 8.4:+23843541 | MS.gene46386:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAAAATATGTATGTAAAAA+AGG | - | chr8.4:23845394-23845413 | None:intergenic | 10.0% |
| !! | AAAAAAAATAGTGATATTCA+AGG | - | chr8.4:23845794-23845813 | None:intergenic | 15.0% |
| !! | AAATTGTCATAAGATATTTA+CGG | - | chr8.4:23846092-23846111 | None:intergenic | 15.0% |
| !! | CACTTTATATTTAGTAATTT+AGG | + | chr8.4:23845058-23845077 | MS.gene46386:intron | 15.0% |
| !! | TTAATATTAAAAGCAGAAAT+AGG | - | chr8.4:23845501-23845520 | None:intergenic | 15.0% |
| !!! | ATTCTTTAATTTAAATGAGA+AGG | - | chr8.4:23846138-23846157 | None:intergenic | 15.0% |
| !!! | CTGTTTTCAATAATTTTAAA+AGG | + | chr8.4:23844323-23844342 | MS.gene46386:intron | 15.0% |
| !!! | TTATTATGTTGAAATTTTCT+CGG | + | chr8.4:23847373-23847392 | MS.gene46386:intron | 15.0% |
| !!! | TTTCTATATTTTGTTTTCAA+AGG | + | chr8.4:23846332-23846351 | MS.gene46386:intron | 15.0% |
| !! | AAAACAGAGTTATTTATGTT+TGG | - | chr8.4:23844310-23844329 | None:intergenic | 20.0% |
| !! | AATGATTCATAAAGTAAGTT+AGG | - | chr8.4:23846968-23846987 | None:intergenic | 20.0% |
| !! | AATTGCTATCATTATTGTAA+AGG | + | chr8.4:23847073-23847092 | MS.gene46386:CDS | 20.0% |
| !! | AGCTTAAATAAACTTGATAT+TGG | + | chr8.4:23846243-23846262 | MS.gene46386:intron | 20.0% |
| !! | ATATTTAGTAATTTAGGCAA+TGG | + | chr8.4:23845064-23845083 | MS.gene46386:intron | 20.0% |
| !! | ATGCTTTCTTTATAGAAAAA+TGG | - | chr8.4:23846874-23846893 | None:intergenic | 20.0% |
| !! | CAGTTAGTTAAGAAAATATA+TGG | + | chr8.4:23845937-23845956 | MS.gene46386:intron | 20.0% |
| !! | TAAACAGATTAAATCTTCTT+TGG | - | chr8.4:23845641-23845660 | None:intergenic | 20.0% |
| !! | TAATCTAGTGTATATATTGT+TGG | + | chr8.4:23844431-23844450 | MS.gene46386:intron | 20.0% |
| !! | TATCATTATTGTAAAGGTAA+GGG | + | chr8.4:23847079-23847098 | MS.gene46386:intron | 20.0% |
| !! | TATTTCATGTGGATAAAATT+TGG | + | chr8.4:23846608-23846627 | MS.gene46386:intron | 20.0% |
| !! | TGATTGCATAAAATTTATTC+TGG | + | chr8.4:23844025-23844044 | MS.gene46386:intron | 20.0% |
| !! | TTGTATATGAATAAAAAGCA+AGG | - | chr8.4:23846224-23846243 | None:intergenic | 20.0% |
| !!! | AAAAAAACTTGATTTTGACA+TGG | + | chr8.4:23846775-23846794 | MS.gene46386:intron | 20.0% |
| !!! | AAAAAACTTGATTTTGACAT+GGG | + | chr8.4:23846776-23846795 | MS.gene46386:intron | 20.0% |
| !!! | AAAATCAAGTTTTTTTTCCT+TGG | - | chr8.4:23846771-23846790 | None:intergenic | 20.0% |
| !!! | AAATGAAATACAAGCTATTT+TGG | + | chr8.4:23845602-23845621 | MS.gene46386:intron | 20.0% |
| !!! | AAATTTGCTTTCTAACTTTT+TGG | + | chr8.4:23847102-23847121 | MS.gene46386:intron | 20.0% |
| !!! | AGTTAAAAATACCTGTATTT+TGG | + | chr8.4:23845548-23845567 | MS.gene46386:intron | 20.0% |
| !!! | ATTTAATCTGTTTACCATTT+TGG | + | chr8.4:23845647-23845666 | MS.gene46386:intron | 20.0% |
| !!! | CTTTTTCTCATTCAAAAATT+TGG | - | chr8.4:23844534-23844553 | None:intergenic | 20.0% |
| !!! | TATAAAGAAAGCATCTAAAT+TGG | + | chr8.4:23846880-23846899 | MS.gene46386:CDS | 20.0% |
| !!! | TTGATTTTTTTGTTCAGAAA+TGG | + | chr8.4:23843695-23843714 | MS.gene46386:intron | 20.0% |
| !!! | TTTTAGCTTAGAAACAATTT+TGG | + | chr8.4:23844194-23844213 | MS.gene46386:intron | 20.0% |
| ! | AAAAATCACATTGATCTTTC+AGG | - | chr8.4:23843958-23843977 | None:intergenic | 25.0% |
| ! | AAAGACCATATATTACTTGA+AGG | - | chr8.4:23846001-23846020 | None:intergenic | 25.0% |
| ! | AACATGAAGTAGCAAAATTA+AGG | - | chr8.4:23844619-23844638 | None:intergenic | 25.0% |
| ! | AAGTTAAAAGTCAATTGTAG+AGG | + | chr8.4:23844158-23844177 | MS.gene46386:intron | 25.0% |
| ! | AATCAGTAAAATAAGCAGTT+TGG | - | chr8.4:23847604-23847623 | None:intergenic | 25.0% |
| ! | ACATGAAGTAGCAAAATTAA+GGG | - | chr8.4:23844618-23844637 | None:intergenic | 25.0% |
| ! | ACTTCTGCATTATTTCATAT+TGG | + | chr8.4:23845261-23845280 | MS.gene46386:intron | 25.0% |
| ! | AGGTAAAAGTGATATATGTT+CGG | + | chr8.4:23844067-23844086 | MS.gene46386:intron | 25.0% |
| ! | ATAAATCAAGCATAACAAGA+AGG | - | chr8.4:23845136-23845155 | None:intergenic | 25.0% |
| ! | ATACATGCATAAACTAAAAG+CGG | - | chr8.4:23847351-23847370 | None:intergenic | 25.0% |
| ! | ATATGAATAAAAAGCAAGGT+TGG | - | chr8.4:23846220-23846239 | None:intergenic | 25.0% |
| ! | ATTGGATTATTGCTAAATCA+TGG | + | chr8.4:23846261-23846280 | MS.gene46386:intron | 25.0% |
| ! | CTAGTGAAATAAAATGATCA+TGG | - | chr8.4:23845016-23845035 | None:intergenic | 25.0% |
| ! | CTATCATTATTGTAAAGGTA+AGG | + | chr8.4:23847078-23847097 | MS.gene46386:intron | 25.0% |
| ! | CTTCTGCATTATTTCATATT+GGG | + | chr8.4:23845262-23845281 | MS.gene46386:intron | 25.0% |
| ! | GAGAACTGAAAAATACTAAA+TGG | + | chr8.4:23846545-23846564 | MS.gene46386:intron | 25.0% |
| ! | GGATGCATTTATATAAAAGT+GGG | + | chr8.4:23844088-23844107 | MS.gene46386:intron | 25.0% |
| ! | TATGAATAAAAAGCAAGGTT+GGG | - | chr8.4:23846219-23846238 | None:intergenic | 25.0% |
| ! | TATGTTTGTGTTTGATTATG+TGG | + | chr8.4:23843977-23843996 | MS.gene46386:intron | 25.0% |
| ! | TTTGACCTTCAAGTAATATA+TGG | + | chr8.4:23845993-23846012 | MS.gene46386:intron | 25.0% |
| !! | AAATTACTTCCGACTTTTAA+AGG | - | chr8.4:23845581-23845600 | None:intergenic | 25.0% |
| !! | CTTGATGTTGTTCATTTTAT+TGG | + | chr8.4:23843872-23843891 | MS.gene46386:intron | 25.0% |
| !! | TGCAATTGTGGTTTAATTTA+AGG | - | chr8.4:23846471-23846490 | None:intergenic | 25.0% |
| !! | TTGATTGTTTGATTCCATTT+TGG | + | chr8.4:23844346-23844365 | MS.gene46386:intron | 25.0% |
| !!! | CATGATCATTTTATTTCACT+AGG | + | chr8.4:23845014-23845033 | MS.gene46386:intron | 25.0% |
| !!! | GTTTACCATTTTGGTTAATT+TGG | + | chr8.4:23845656-23845675 | MS.gene46386:intron | 25.0% |
| !!! | TACTCCTTTAGAATCAATTT+AGG | + | chr8.4:23844267-23844286 | MS.gene46386:intron | 25.0% |
| !!! | TAGTATTTTATTTGTCCTAG+AGG | + | chr8.4:23845858-23845877 | MS.gene46386:intron | 25.0% |
| !!! | TTCTTGAATCTAGTTTTACA+AGG | - | chr8.4:23847569-23847588 | None:intergenic | 25.0% |
| AAGTAAGCAAGCATAATATG+TGG | - | chr8.4:23845898-23845917 | None:intergenic | 30.0% | |
| AATGTCAAATGAACAGCTAA+TGG | + | chr8.4:23845701-23845720 | MS.gene46386:CDS | 30.0% | |
| AATTTAGGCTCATCTAAAAG+TGG | + | chr8.4:23844282-23844301 | MS.gene46386:intron | 30.0% | |
| ATCATGGAATCAGTGAAATA+AGG | + | chr8.4:23846277-23846296 | MS.gene46386:intron | 30.0% | |
| ATGCTCCAAATTAACCAAAA+TGG | - | chr8.4:23845664-23845683 | None:intergenic | 30.0% | |
| ATTAAATCTTCTTTGGTCAG+TGG | - | chr8.4:23845634-23845653 | None:intergenic | 30.0% | |
| ATTCTGTTGTCTATTTCATG+TGG | + | chr8.4:23846597-23846616 | MS.gene46386:intron | 30.0% | |
| ATTTCTACCATAGGTAAACA+TGG | - | chr8.4:23847193-23847212 | None:intergenic | 30.0% | |
| CATGAAGTAGCAAAATTAAG+GGG | - | chr8.4:23844617-23844636 | None:intergenic | 30.0% | |
| CATTATTTCATATTGGGAGA+TGG | + | chr8.4:23845268-23845287 | MS.gene46386:intron | 30.0% | |
| CGGATGCATTTATATAAAAG+TGG | + | chr8.4:23844087-23844106 | MS.gene46386:intron | 30.0% | |
| CTATACTGAACAAAATGATG+TGG | - | chr8.4:23846943-23846962 | None:intergenic | 30.0% | |
| GAACAAAATGAGAGATTCTA+AGG | - | chr8.4:23844764-23844783 | None:intergenic | 30.0% | |
| GACGGTACTAAATAAACAAT+AGG | - | chr8.4:23846055-23846074 | None:intergenic | 30.0% | |
| GTACTTCATGGTGAATTTAT+TGG | + | chr8.4:23847155-23847174 | MS.gene46386:intron | 30.0% | |
| TCTAAATTGGTCAAGGAAAT+CGG | + | chr8.4:23846893-23846912 | MS.gene46386:CDS | 30.0% | |
| TGTTTCAGCTATTGTTTGAA+GGG | + | chr8.4:23845469-23845488 | MS.gene46386:intron | 30.0% | |
| TTAGAGCACAATTTAATTGC+TGG | + | chr8.4:23845963-23845982 | MS.gene46386:intron | 30.0% | |
| TTGAACAATCTATTGCAGAA+GGG | - | chr8.4:23846662-23846681 | None:intergenic | 30.0% | |
| TTTCCAAATACATAGACTAC+TGG | + | chr8.4:23845817-23845836 | MS.gene46386:intron | 30.0% | |
| ! | AAACTCTATTCAGTGCTTTT+TGG | + | chr8.4:23847436-23847455 | MS.gene46386:intron | 30.0% |
| ! | AATAAGGATGAAAAAGTGTG+AGG | + | chr8.4:23846293-23846312 | MS.gene46386:intron | 30.0% |
| ! | CTACTCAATTTAAGACTACA+AGG | - | chr8.4:23846383-23846402 | None:intergenic | 30.0% |
| ! | TAAAGAAGTCAAAGCTTTAG+AGG | + | chr8.4:23844487-23844506 | MS.gene46386:CDS | 30.0% |
| ! | TGAGCCTAAATTGATTCTAA+AGG | - | chr8.4:23844274-23844293 | None:intergenic | 30.0% |
| ! | TTTTTGTCAAACTGTTGTCT+TGG | + | chr8.4:23846023-23846042 | MS.gene46386:intron | 30.0% |
| !! | AACTCTATTCAGTGCTTTTT+GGG | + | chr8.4:23847437-23847456 | MS.gene46386:intron | 30.0% |
| !! | AGTTACTCAGTTTTTAGACA+AGG | + | chr8.4:23845098-23845117 | MS.gene46386:intron | 30.0% |
| !! | CATTGATCTTTCAGGTTAAT+AGG | - | chr8.4:23843950-23843969 | None:intergenic | 30.0% |
| !! | GGTGTTTGATTTGAATATTC+TGG | + | chr8.4:23846566-23846585 | MS.gene46386:intron | 30.0% |
| !!! | GCTGAAAATGAGTTGATTTT+AGG | + | chr8.4:23844047-23844066 | MS.gene46386:intron | 30.0% |
| !!! | TTGTTGGATCTGTTTTTTTC+AGG | + | chr8.4:23844447-23844466 | MS.gene46386:intron | 30.0% |
| AAAAGCGGTAAATCTGTGAA+AGG | - | chr8.4:23847336-23847355 | None:intergenic | 35.0% | |
| AAGCGAATTGAACTCTTTGA+GGG | + | chr8.4:23844873-23844892 | MS.gene46386:CDS | 35.0% | |
| AATAAAAAGCAAGGTTGGGA+AGG | - | chr8.4:23846215-23846234 | None:intergenic | 35.0% | |
| AATTACCATGATTAGTGGTC+TGG | + | chr8.4:23844399-23844418 | MS.gene46386:intron | 35.0% | |
| ACTGTACATCAAACTTCTAG+AGG | - | chr8.4:23846512-23846531 | None:intergenic | 35.0% | |
| ATAACAAGAAGGTAGAAGCA+CGG | - | chr8.4:23845125-23845144 | None:intergenic | 35.0% | |
| ATGAAGTACAGCAACAATAG+AGG | - | chr8.4:23847144-23847163 | None:intergenic | 35.0% | |
| ATTGTGACTGTATGTATGAG+CGG | + | chr8.4:23845188-23845207 | MS.gene46386:intron | 35.0% | |
| CATGAGACAGAAATTTGAAG+CGG | - | chr8.4:23843652-23843671 | None:intergenic | 35.0% | |
| CCACTAATCATGGTAATTCA+TGG | - | chr8.4:23844397-23844416 | None:intergenic | 35.0% | |
| CCATGAATTACCATGATTAG+TGG | + | chr8.4:23844394-23844413 | MS.gene46386:intron | 35.0% | |
| CTGTTTCAGCTATTGTTTGA+AGG | + | chr8.4:23845468-23845487 | MS.gene46386:intron | 35.0% | |
| CTTGAACAATCTATTGCAGA+AGG | - | chr8.4:23846663-23846682 | None:intergenic | 35.0% | |
| GAATGAGAAAAAGCAGTCAA+TGG | + | chr8.4:23844541-23844560 | MS.gene46386:CDS | 35.0% | |
| GCAATAGATTGTTCAAGACA+CGG | + | chr8.4:23846666-23846685 | MS.gene46386:intron | 35.0% | |
| GTAATTCATGGATCAAAGCT+TGG | - | chr8.4:23844385-23844404 | None:intergenic | 35.0% | |
| GTCAAAGCAATTTCTACCAT+AGG | - | chr8.4:23847202-23847221 | None:intergenic | 35.0% | |
| GTTCAAGACACGGTAAATAT+TGG | + | chr8.4:23846676-23846695 | MS.gene46386:CDS | 35.0% | |
| GTTTCAGCTATTGTTTGAAG+GGG | + | chr8.4:23845470-23845489 | MS.gene46386:intron | 35.0% | |
| TAAGCGAATTGAACTCTTTG+AGG | + | chr8.4:23844872-23844891 | MS.gene46386:CDS | 35.0% | |
| TACAAGGTAAACTGAAACCA+AGG | - | chr8.4:23847553-23847572 | None:intergenic | 35.0% | |
| TCACCAGTAGTCTATGTATT+TGG | - | chr8.4:23845823-23845842 | None:intergenic | 35.0% | |
| TCAGAAGCTGGAGAAAATTA+AGG | + | chr8.4:23843721-23843740 | MS.gene46386:CDS | 35.0% | |
| TCATTTGTTCCGTCTACAAA+AGG | - | chr8.4:23846823-23846842 | None:intergenic | 35.0% | |
| TCTAGAAGTTTGATGTACAG+TGG | + | chr8.4:23846511-23846530 | MS.gene46386:intron | 35.0% | |
| TCTATTGTTGCTGTACTTCA+TGG | + | chr8.4:23847143-23847162 | MS.gene46386:intron | 35.0% | |
| TGAAGCGGAAATCAAAACAA+TGG | - | chr8.4:23843637-23843656 | None:intergenic | 35.0% | |
| TGAAGTACAGCAACAATAGA+GGG | - | chr8.4:23847143-23847162 | None:intergenic | 35.0% | |
| TGCTACTGACAAGTGTATTA+TGG | + | chr8.4:23847022-23847041 | MS.gene46386:CDS | 35.0% | |
| TGTTATACATACACCTCCTT+GGG | + | chr8.4:23846409-23846428 | MS.gene46386:intron | 35.0% | |
| TTGTTATACATACACCTCCT+TGG | + | chr8.4:23846408-23846427 | MS.gene46386:intron | 35.0% | |
| TTTCAGCTATTGTTTGAAGG+GGG | + | chr8.4:23845471-23845490 | MS.gene46386:intron | 35.0% | |
| ! | AATGAACAGCTAATGGATCA+TGG | + | chr8.4:23845708-23845727 | MS.gene46386:CDS | 35.0% |
| ! | AATGGTAAGATGTTTAGCTC+TGG | + | chr8.4:23844559-23844578 | MS.gene46386:intron | 35.0% |
| ! | AGAAAATGCGAGAGTGTAAA+GGG | + | chr8.4:23843783-23843802 | MS.gene46386:CDS | 35.0% |
| ! | AGATCATAGAAGTGTGAGAA+AGG | - | chr8.4:23845367-23845386 | None:intergenic | 35.0% |
| ! | ATATTTTCCACATGTACCCA+AGG | - | chr8.4:23846428-23846447 | None:intergenic | 35.0% |
| ! | ATGAACAGCTAATGGATCAT+GGG | + | chr8.4:23845709-23845728 | MS.gene46386:CDS | 35.0% |
| ! | CTTACTTGTTGATGCTATCA+AGG | - | chr8.4:23844807-23844826 | None:intergenic | 35.0% |
| ! | CTTGCTCGCATTTTTGTAAT+AGG | + | chr8.4:23846998-23847017 | MS.gene46386:intron | 35.0% |
| ! | GAGATTCTAAGGAAGCAAAA+TGG | - | chr8.4:23844753-23844772 | None:intergenic | 35.0% |
| ! | TAACCTCTTCCTTTTGTAGA+CGG | + | chr8.4:23846811-23846830 | MS.gene46386:intron | 35.0% |
| ! | TCATTTTGTTCTTGCTTGAG+TGG | + | chr8.4:23844773-23844792 | MS.gene46386:intron | 35.0% |
| ! | TTTACACTCTCGCATTTTCT+CGG | - | chr8.4:23843783-23843802 | None:intergenic | 35.0% |
| ! | TTTTTCCTTGGACTACTTCT+GGG | - | chr8.4:23846759-23846778 | None:intergenic | 35.0% |
| !! | GAAAGCATCTAAATTGGTCA+AGG | + | chr8.4:23846886-23846905 | MS.gene46386:CDS | 35.0% |
| !! | GATTTTGACATGGGTACTAA+GGG | + | chr8.4:23846785-23846804 | MS.gene46386:intron | 35.0% |
| !! | GTTTGATTCCATTTTGGCAT+TGG | + | chr8.4:23844352-23844371 | MS.gene46386:intron | 35.0% |
| !! | TGATTTTGACATGGGTACTA+AGG | + | chr8.4:23846784-23846803 | MS.gene46386:intron | 35.0% |
| !! | TTACTTTTCCTCATCGTCAT+TGG | + | chr8.4:23847047-23847066 | MS.gene46386:CDS | 35.0% |
| !!! | CTTTTTGGGTTGTTAACAGA+CGG | + | chr8.4:23847451-23847470 | MS.gene46386:intron | 35.0% |
| !!! | TTTTTTCCTTGGACTACTTC+TGG | - | chr8.4:23846760-23846779 | None:intergenic | 35.0% |
| AAGGTAAACTGAAACCAAGG+TGG | - | chr8.4:23847550-23847569 | None:intergenic | 40.0% | |
| AAGGTTGACAGCCAAAATAC+AGG | - | chr8.4:23845562-23845581 | None:intergenic | 40.0% | |
| AATTGGTCAAGGAAATCGGT+AGG | + | chr8.4:23846897-23846916 | MS.gene46386:CDS | 40.0% | |
| AGATGTGCCATGTTTACCTA+TGG | + | chr8.4:23847183-23847202 | MS.gene46386:intron | 40.0% | |
| AGCGGAAATCAAAACAATGG+AGG | - | chr8.4:23843634-23843653 | None:intergenic | 40.0% | |
| CAATTACTCCAATGACGATG+AGG | - | chr8.4:23847058-23847077 | None:intergenic | 40.0% | |
| CACTTTCACTGAAACGATTG+AGG | - | chr8.4:23845220-23845239 | None:intergenic | 40.0% | |
| GAAATTGCTTTGACAACACG+TGG | + | chr8.4:23847208-23847227 | MS.gene46386:intron | 40.0% | |
| TAGATTCTTACGATAGAGCG+CGG | - | chr8.4:23843604-23843623 | None:intergenic | 40.0% | |
| TAGGTAAACATGGCACATCT+AGG | - | chr8.4:23847183-23847202 | None:intergenic | 40.0% | |
| TGCTTGATTTATACGACTCG+TGG | + | chr8.4:23845144-23845163 | MS.gene46386:intron | 40.0% | |
| ! | AGCTAATGGATCATGGGAAT+CGG | + | chr8.4:23845715-23845734 | MS.gene46386:CDS | 40.0% |
| ! | CAGAAATGGATTTCAGAAGC+TGG | + | chr8.4:23843709-23843728 | MS.gene46386:intron | 40.0% |
| ! | GAAAATGTCTTGCTAGCTTC+CGG | + | chr8.4:23844918-23844937 | MS.gene46386:CDS | 40.0% |
| ! | GAGAAAATGCGAGAGTGTAA+AGG | + | chr8.4:23843782-23843801 | MS.gene46386:CDS | 40.0% |
| ! | GATGAAAAAGTGTGAGGAAG+TGG | + | chr8.4:23846299-23846318 | MS.gene46386:intron | 40.0% |
| ! | GCACATTTTCAACACAGATC+TGG | - | chr8.4:23843922-23843941 | None:intergenic | 40.0% |
| ! | GGCTGTCAACCTTTAAAAGT+CGG | + | chr8.4:23845569-23845588 | MS.gene46386:intron | 40.0% |
| ! | TAACAAGAAGGTAGAAGCAC+GGG | - | chr8.4:23845124-23845143 | None:intergenic | 40.0% |
| ! | TCACTAGGCATAGCTTTTGA+TGG | + | chr8.4:23847310-23847329 | MS.gene46386:intron | 40.0% |
| ! | TTTTCCTTGGACTACTTCTG+GGG | - | chr8.4:23846758-23846777 | None:intergenic | 40.0% |
| !! | AGTGGAGGAGTTCTTTTTCA+TGG | - | chr8.4:23847285-23847304 | None:intergenic | 40.0% |
| AAGAGCCAGACCACTAATCA+TGG | - | chr8.4:23844407-23844426 | None:intergenic | 45.0% | |
| AAGCCATTGAGAGGGGAAAA+AGG | + | chr8.4:23845757-23845776 | MS.gene46386:CDS | 45.0% | |
| ACACAGATCAAGCCATTGAG+AGG | + | chr8.4:23845748-23845767 | MS.gene46386:CDS | 45.0% | |
| ACAGATCAAGCCATTGAGAG+GGG | + | chr8.4:23845750-23845769 | MS.gene46386:CDS | 45.0% | |
| ACGGAAGTAAACTGACGAGA+CGG | - | chr8.4:23846073-23846092 | None:intergenic | 45.0% | |
| AGCCATTGAGAGGGGAAAAA+GGG | + | chr8.4:23845758-23845777 | MS.gene46386:CDS | 45.0% | |
| ATTGAGAGGGGAAAAAGGGT+TGG | + | chr8.4:23845762-23845781 | MS.gene46386:intron | 45.0% | |
| CACAGATCAAGCCATTGAGA+GGG | + | chr8.4:23845749-23845768 | MS.gene46386:CDS | 45.0% | |
| CGAACAACAGAAGACTGCTT+TGG | + | chr8.4:23847751-23847770 | MS.gene46386:CDS | 45.0% | |
| CTATGCCTAGTGAAGACTAG+TGG | - | chr8.4:23847303-23847322 | None:intergenic | 45.0% | |
| CTTCTGTTGTTCGTGACAAC+AGG | - | chr8.4:23847744-23847763 | None:intergenic | 45.0% | |
| GAAGAAGCCAGCATACTTAC+CGG | - | chr8.4:23844940-23844959 | None:intergenic | 45.0% | |
| GAGCTACAACATTTGCCTCT+AGG | - | chr8.4:23845876-23845895 | None:intergenic | 45.0% | |
| GAGTAGAAAGAGCAGGCAAT+TGG | + | chr8.4:23843748-23843767 | MS.gene46386:CDS | 45.0% | |
| GCTTGTACATCCAGAGAACA+AGG | + | chr8.4:23847689-23847708 | MS.gene46386:intron | 45.0% | |
| GGTTGGGAAGGTAATGTTTC+AGG | - | chr8.4:23846203-23846222 | None:intergenic | 45.0% | |
| GTGTGCTTCCAATGCCAAAA+TGG | - | chr8.4:23844363-23844382 | None:intergenic | 45.0% | |
| GTTAACAGACGGTCAAGATC+AGG | + | chr8.4:23847462-23847481 | MS.gene46386:intron | 45.0% | |
| GTTCCGTCTACAAAAGGAAG+AGG | - | chr8.4:23846817-23846836 | None:intergenic | 45.0% | |
| TCTTCTGTGTCGCCTTCATT+GGG | - | chr8.4:23844900-23844919 | None:intergenic | 45.0% | |
| TTCTTCTGTGTCGCCTTCAT+TGG | - | chr8.4:23844901-23844920 | None:intergenic | 45.0% | |
| ! | AAACTTCTAGAGGAGCAGAG+GGG | - | chr8.4:23846502-23846521 | None:intergenic | 45.0% |
| ! | AACCCTTTTTCCCCTCTCAA+TGG | - | chr8.4:23845763-23845782 | None:intergenic | 45.0% |
| ! | CAAACTTCTAGAGGAGCAGA+GGG | - | chr8.4:23846503-23846522 | None:intergenic | 45.0% |
| ! | TCAAACTTCTAGAGGAGCAG+AGG | - | chr8.4:23846504-23846523 | None:intergenic | 45.0% |
| ! | TTTTCCACATGTACCCAAGG+AGG | - | chr8.4:23846425-23846444 | None:intergenic | 45.0% |
| AAGGACATTCGCGACATTCC+AGG | + | chr8.4:23847708-23847727 | MS.gene46386:CDS | 50.0% | |
| ACAACAGGAGGAGCTAATCC+TGG | - | chr8.4:23847729-23847748 | None:intergenic | 50.0% | |
| AGCTATTGTTTGAAGGGGGC+TGG | + | chr8.4:23845475-23845494 | MS.gene46386:intron | 50.0% | |
| AGGATGCGAGTAGAAAGAGC+AGG | + | chr8.4:23843741-23843760 | MS.gene46386:CDS | 50.0% | |
| CGATAGAGCGCGGAAATTGT+CGG | - | chr8.4:23843594-23843613 | None:intergenic | 50.0% | |
| CTAGCTTCCGGTAAGTATGC+TGG | + | chr8.4:23844930-23844949 | MS.gene46386:intron | 50.0% | |
| CTGTTGTTCGTGACAACAGG+AGG | - | chr8.4:23847741-23847760 | None:intergenic | 50.0% | |
| GAGCAGAGTTGTCAATGAGC+TGG | + | chr8.4:23846841-23846860 | MS.gene46386:CDS | 50.0% | |
| GGATCATGGGAATCGGATGA+TGG | + | chr8.4:23845722-23845741 | MS.gene46386:CDS | 50.0% | |
| GTGACTGTATGTATGAGCGG+AGG | + | chr8.4:23845191-23845210 | MS.gene46386:intron | 50.0% | |
| TACACCTCCTTGGGTACATG+TGG | + | chr8.4:23846418-23846437 | MS.gene46386:intron | 50.0% | |
| TCGCGAATGTCCTTGTTCTC+TGG | - | chr8.4:23847702-23847721 | None:intergenic | 50.0% | |
| TGAGACTGCTGCAGCTCTTA+AGG | + | chr8.4:23846702-23846721 | MS.gene46386:CDS | 50.0% | |
| TGCCTAGTGAAGACTAGTGG+AGG | - | chr8.4:23847300-23847319 | None:intergenic | 50.0% | |
| TTCACCCCAGAAGTAGTCCA+AGG | + | chr8.4:23846751-23846770 | MS.gene46386:intron | 50.0% | |
| ! | CTCTTTGAGGGACCCAATGA+AGG | + | chr8.4:23844885-23844904 | MS.gene46386:CDS | 50.0% |
| !! | CTCCTCCACTAGTCTTCACT+AGG | + | chr8.4:23847295-23847314 | MS.gene46386:intron | 50.0% |
| !! | TTGGACTACTTCTGGGGTGA+AGG | - | chr8.4:23846752-23846771 | None:intergenic | 50.0% |
| GGGGACATGGAGTGCAATTG+TGG | - | chr8.4:23846483-23846502 | None:intergenic | 55.0% | |
| GGTCAAGGAAATCGGTAGGC+AGG | + | chr8.4:23846901-23846920 | MS.gene46386:CDS | 55.0% | |
| TGCTGCAGCTCTTAAGGCAC+AGG | + | chr8.4:23846708-23846727 | MS.gene46386:CDS | 55.0% | |
| CTAGAGGAGCAGAGGGGACA+TGG | - | chr8.4:23846496-23846515 | None:intergenic | 60.0% | |
| GAGGATCTGGCGGAGATCGA+CGG | + | chr8.4:23843560-23843579 | MS.gene46386:CDS | 60.0% | |
| TCAGTTGTCGGCGATCAGCG+AGG | + | chr8.4:23843541-23843560 | MS.gene46386:CDS | 60.0% | |
| GGCGATCAGCGAGGATCTGG+CGG | + | chr8.4:23843550-23843569 | MS.gene46386:CDS | 65.0% | |
| GTCGGCGATCAGCGAGGATC+TGG | + | chr8.4:23843547-23843566 | MS.gene46386:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8.4 | gene | 23843536 | 23847794 | 23843536 | ID=MS.gene46386 |
| chr8.4 | mRNA | 23843536 | 23847794 | 23843536 | ID=MS.gene46386.t1;Parent=MS.gene46386 |
| chr8.4 | exon | 23843536 | 23843612 | 23843536 | ID=MS.gene46386.t1.exon1;Parent=MS.gene46386.t1 |
| chr8.4 | CDS | 23843536 | 23843612 | 23843536 | ID=cds.MS.gene46386.t1;Parent=MS.gene46386.t1 |
| chr8.4 | exon | 23843712 | 23843804 | 23843712 | ID=MS.gene46386.t1.exon2;Parent=MS.gene46386.t1 |
| chr8.4 | CDS | 23843712 | 23843804 | 23843712 | ID=cds.MS.gene46386.t1;Parent=MS.gene46386.t1 |
| chr8.4 | exon | 23844469 | 23844562 | 23844469 | ID=MS.gene46386.t1.exon3;Parent=MS.gene46386.t1 |
| chr8.4 | CDS | 23844469 | 23844562 | 23844469 | ID=cds.MS.gene46386.t1;Parent=MS.gene46386.t1 |
| chr8.4 | exon | 23844699 | 23844736 | 23844699 | ID=MS.gene46386.t1.exon4;Parent=MS.gene46386.t1 |
| chr8.4 | CDS | 23844699 | 23844736 | 23844699 | ID=cds.MS.gene46386.t1;Parent=MS.gene46386.t1 |
| chr8.4 | exon | 23844851 | 23844939 | 23844851 | ID=MS.gene46386.t1.exon5;Parent=MS.gene46386.t1 |
| chr8.4 | CDS | 23844851 | 23844939 | 23844851 | ID=cds.MS.gene46386.t1;Parent=MS.gene46386.t1 |
| chr8.4 | exon | 23845700 | 23845779 | 23845700 | ID=MS.gene46386.t1.exon6;Parent=MS.gene46386.t1 |
| chr8.4 | CDS | 23845700 | 23845779 | 23845700 | ID=cds.MS.gene46386.t1;Parent=MS.gene46386.t1 |
| chr8.4 | exon | 23846673 | 23846729 | 23846673 | ID=MS.gene46386.t1.exon7;Parent=MS.gene46386.t1 |
| chr8.4 | CDS | 23846673 | 23846729 | 23846673 | ID=cds.MS.gene46386.t1;Parent=MS.gene46386.t1 |
| chr8.4 | exon | 23846830 | 23846922 | 23846830 | ID=MS.gene46386.t1.exon8;Parent=MS.gene46386.t1 |
| chr8.4 | CDS | 23846830 | 23846922 | 23846830 | ID=cds.MS.gene46386.t1;Parent=MS.gene46386.t1 |
| chr8.4 | exon | 23847020 | 23847094 | 23847020 | ID=MS.gene46386.t1.exon9;Parent=MS.gene46386.t1 |
| chr8.4 | CDS | 23847020 | 23847094 | 23847020 | ID=cds.MS.gene46386.t1;Parent=MS.gene46386.t1 |
| chr8.4 | exon | 23847690 | 23847794 | 23847690 | ID=MS.gene46386.t1.exon10;Parent=MS.gene46386.t1 |
| chr8.4 | CDS | 23847690 | 23847794 | 23847690 | ID=cds.MS.gene46386.t1;Parent=MS.gene46386.t1 |
| Gene Sequence |
| Protein sequence |
