AlfalfaGEDB | MS.gene46386

M. sativa cultivar XinJiangDaYe / MS.gene46386

KEGG: K08494
GO: GO:0003674 GO:0005484 GO:0005488 GO:0005515 GO:0006810 GO:0006890 GO:0008150 GO:0016192 GO:0030674 GO:0048193 GO:0051179 GO:0051234 GO:0060090
PFAM: PF03908.16

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene46386.t1	XP_013457561.1	99.6	263	1	0	1	263	1	263	4.20E-135	490.7

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene46386.t1	Q944A9	72.2	266	68	3	1	262	1	264	1.2e-98	360.9

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene46386.t1	A0A072UPG8	99.6	263	1	0	1	263	1	263	3.0e-135	490.7

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene049887	MS.gene46386	0.80686	6.70E-50	-1.69E-46
MS.gene051885	MS.gene46386	0.841727	3.99E-58	-1.69E-46
MS.gene053144	MS.gene46386	0.809817	1.57E-50	-1.69E-46
MS.gene058720	MS.gene46386	0.824349	8.47E-54	-1.69E-46
MS.gene058852	MS.gene46386	0.808133	3.60E-50	-1.69E-46
MS.gene059171	MS.gene46386	0.814984	1.17E-51	-1.69E-46
MS.gene061007	MS.gene46386	0.818996	1.46E-52	-1.69E-46

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PPI:

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Gene1	Gene2	Type
MS.gene030153	MS.gene46386	PPI
MS.gene033967	MS.gene46386	PPI
MS.gene062046	MS.gene46386	PPI
MS.gene064149	MS.gene46386	PPI
MS.gene068930	MS.gene46386	PPI
MS.gene26787	MS.gene46386	PPI
MS.gene46386	MS.gene68624	PPI
MS.gene98405	MS.gene46386	PPI

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene46386.t1	MTR_4g099140	99.620	263	1	0	1	263	1	263	0.0	533
MS.gene46386.t1	MTR_2g045960	65.370	257	84	2	7	260	7	261	2.77e-110	319
MS.gene46386.t1	MTR_4g123910	64.202	257	87	2	7	260	7	261	2.57e-105	306

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene46386.t1	AT2G35190	75.564	266	59	3	1	262	1	264	2.79e-135	382
MS.gene46386.t1	AT3G17440	62.879	264	92	2	7	266	7	268	6.66e-108	313
MS.gene46386.t1	AT1G48240	63.178	258	89	2	7	260	7	262	4.86e-106	308
MS.gene46386.t1	AT1G48240	63.380	213	72	2	52	260	1	211	3.35e-84	251
MS.gene46386.t1	AT3G17440	61.353	207	76	1	7	209	7	213	5.14e-84	251

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Find 49 sgRNAs with CRISPR-Local

Find 220 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAGCCATTGAGAGGGGAAAA+AGG	0.306993	8.4:+23845757	MS.gene46386:CDS
AAGCGAATTGAACTCTTTGA+GGG	0.501546	8.4:+23844873	MS.gene46386:CDS
AAGGACATTCGCGACATTCC+AGG	0.392891	8.4:+23847708	MS.gene46386:CDS
AATGAACAGCTAATGGATCA+TGG	0.468547	8.4:+23845708	MS.gene46386:CDS
AATGTCAAATGAACAGCTAA+TGG	0.436817	8.4:+23845701	MS.gene46386:CDS
AATTGCTATCATTATTGTAA+AGG	0.494738	8.4:+23847073	MS.gene46386:CDS
AATTGGTCAAGGAAATCGGT+AGG	0.642065	8.4:+23846897	MS.gene46386:CDS
ACAACAGGAGGAGCTAATCC+TGG	0.528610	8.4:-23847726	None:intergenic
ACACAGATCAAGCCATTGAG+AGG	0.592198	8.4:+23845748	MS.gene46386:CDS
ACAGATCAAGCCATTGAGAG+GGG	0.669219	8.4:+23845750	MS.gene46386:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAGTAAGCAAGCATAATATG+TGG	-	chr8.4:23845898-23845917	None:intergenic	30.0%
AATGTCAAATGAACAGCTAA+TGG	+	chr8.4:23845701-23845720	MS.gene46386:CDS	30.0%
AATTTAGGCTCATCTAAAAG+TGG	+	chr8.4:23844282-23844301	MS.gene46386:intron	30.0%
ATCATGGAATCAGTGAAATA+AGG	+	chr8.4:23846277-23846296	MS.gene46386:intron	30.0%
ATGCTCCAAATTAACCAAAA+TGG	-	chr8.4:23845664-23845683	None:intergenic	30.0%
ATTAAATCTTCTTTGGTCAG+TGG	-	chr8.4:23845634-23845653	None:intergenic	30.0%
ATTCTGTTGTCTATTTCATG+TGG	+	chr8.4:23846597-23846616	MS.gene46386:intron	30.0%
ATTTCTACCATAGGTAAACA+TGG	-	chr8.4:23847193-23847212	None:intergenic	30.0%
CATGAAGTAGCAAAATTAAG+GGG	-	chr8.4:23844617-23844636	None:intergenic	30.0%
CATTATTTCATATTGGGAGA+TGG	+	chr8.4:23845268-23845287	MS.gene46386:intron	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr8.4	gene	23843536	23847794	23843536	ID=MS.gene46386
chr8.4	mRNA	23843536	23847794	23843536	ID=MS.gene46386.t1;Parent=MS.gene46386
chr8.4	exon	23843536	23843612	23843536	ID=MS.gene46386.t1.exon1;Parent=MS.gene46386.t1
chr8.4	CDS	23843536	23843612	23843536	ID=cds.MS.gene46386.t1;Parent=MS.gene46386.t1
chr8.4	exon	23843712	23843804	23843712	ID=MS.gene46386.t1.exon2;Parent=MS.gene46386.t1
chr8.4	CDS	23843712	23843804	23843712	ID=cds.MS.gene46386.t1;Parent=MS.gene46386.t1
chr8.4	exon	23844469	23844562	23844469	ID=MS.gene46386.t1.exon3;Parent=MS.gene46386.t1
chr8.4	CDS	23844469	23844562	23844469	ID=cds.MS.gene46386.t1;Parent=MS.gene46386.t1
chr8.4	exon	23844699	23844736	23844699	ID=MS.gene46386.t1.exon4;Parent=MS.gene46386.t1
chr8.4	CDS	23844699	23844736	23844699	ID=cds.MS.gene46386.t1;Parent=MS.gene46386.t1
chr8.4	exon	23844851	23844939	23844851	ID=MS.gene46386.t1.exon5;Parent=MS.gene46386.t1
chr8.4	CDS	23844851	23844939	23844851	ID=cds.MS.gene46386.t1;Parent=MS.gene46386.t1
chr8.4	exon	23845700	23845779	23845700	ID=MS.gene46386.t1.exon6;Parent=MS.gene46386.t1
chr8.4	CDS	23845700	23845779	23845700	ID=cds.MS.gene46386.t1;Parent=MS.gene46386.t1
chr8.4	exon	23846673	23846729	23846673	ID=MS.gene46386.t1.exon7;Parent=MS.gene46386.t1
chr8.4	CDS	23846673	23846729	23846673	ID=cds.MS.gene46386.t1;Parent=MS.gene46386.t1
chr8.4	exon	23846830	23846922	23846830	ID=MS.gene46386.t1.exon8;Parent=MS.gene46386.t1
chr8.4	CDS	23846830	23846922	23846830	ID=cds.MS.gene46386.t1;Parent=MS.gene46386.t1
chr8.4	exon	23847020	23847094	23847020	ID=MS.gene46386.t1.exon9;Parent=MS.gene46386.t1
chr8.4	CDS	23847020	23847094	23847020	ID=cds.MS.gene46386.t1;Parent=MS.gene46386.t1
chr8.4	exon	23847690	23847794	23847690	ID=MS.gene46386.t1.exon10;Parent=MS.gene46386.t1
chr8.4	CDS	23847690	23847794	23847690	ID=cds.MS.gene46386.t1;Parent=MS.gene46386.t1

Gene Sequence

>MS.gene46386

ATGGATCAGTTGTCGGCGATCAGCGAGGATCTGGCGGAGATCGACGGACGCGTCGCCGACAATTTCCGCGCTCTATCGTAAGAATCTAATCAAATCCTCCATTGTTTTGATTTCCGCTTCAAATTTCTGTCTCATGCATCGTTTTTTGAATCGTCATTGTTGATTTTTTTGTTCAGAAATGGATTTCAGAAGCTGGAGAAAATTAAGGATGCGAGTAGAAAGAGCAGGCAATTGGAAGAACTCACCGAGAAAATGCGAGAGTGTAAAGGGTAATTTTTGTGTTTCATTCGTTATTTGTGATTGAAATGTTCGTTTTTCATGTGTTACAATGTTGAGCTTGATGTTGTTCATTTTATTGGCGAGTTGAGAGTTGTTTGCATTTTCCAGATCTGTGTTGAAAATGTGCTAAAACCTATTAACCTGAAAGATCAATGTGATTTTTATGTTTGTGTTTGATTATGTGGTGAATAAAATTGATTTTGCATGAATTGATTGCATAAAATTTATTCTGGCTGAAAATGAGTTGATTTTAGGTAAAAGTGATATATGTTCGGATGCATTTATATAAAAGTGGGTTGAACAAACAATTTAAAGTTTTTTTTTTTTGAAGAGAAACAATTTAAAGTTAAAAGTCAATTGTAGAGGCAAAAACTCAAAATTTTAGCTTAGAAACAATTTTGGACGCAAAATCAATTTTACTCAAAAACATCGATACATGTCAAAATCAATTCTACTCCTTTAGAATCAATTTAGGCTCATCTAAAAGTGGAACCAAACATAAATAACTCTGTTTTCAATAATTTTAAAAGGTTGATTGTTTGATTCCATTTTGGCATTGGAAGCACACCAAGCTTTGATCCATGAATTACCATGATTAGTGGTCTGGCTCTTTGCTTAATCTAGTGTATATATTGTTGGATCTGTTTTTTTCAGGCTTATCAAAGAGTTTGATAAAGAAGTCAAAGCTTTAGAGGCTAGATTTGATAGAGAAACAACCAAATTTTTGAATGAGAAAAAGCAGTCAATGGTAAGATGTTTAGCTCTGGATACTAACGTGATATATACACTTCTGTTTTGACCCCTTAATTTTGCTACTTCATGTTTTATATAATTCTAAATCGCATTCATTCTATTACTAACAAGAATTTGCATTTTTGTTGCAGATCAAAGAATTGAATTCATATGTTGCTTTGAAAAAACAGTAAGTGAGAACACCATTTTGCTTCCTTAGAATCTCTCATTTTGTTCTTGCTTGAGTGGAATGCGTACCTTGATAGCATCAACAAGTAAGTGCTTGTGTTTTGTTGCAATGCAGATACGCTTCAAATATTGAGAATAAGCGAATTGAACTCTTTGAGGGACCCAATGAAGGCGACACAGAAGAAAATGTCTTGCTAGCTTCCGGTAAGTATGCTGGCTTCTTCATATCAATTATGCTAATGTTTATGTGTCGCAACATGTTTTCAGTAGTCAAAGTCCATGATCATTTTATTTCACTAGGTGTGACATTATTGATTAAACACACTTTATATTTAGTAATTTAGGCAATGGATATATTTGTCAGTTACTCAGTTTTTAGACAAGGCCCGTGCTTCTACCTTCTTGTTATGCTTGATTTATACGACTCGTGGTTGTATTCATTCTACACTTGTATTGTGACTGTATGTATGAGCGGAGGAGTCCTCAATCGTTTCAGTGAAAGTGAGAGATTAGAAAAACTATCATACTTCTGCATTATTTCATATTGGGAGATGGTTCATGTCGCTTTGATTTGCAGTATACACATTACTTGAAATTCAACATGCATGCATGCTTCGTAGTCTAAGTTCCTTTCTCACACTTCTATGATCTTCATCCTTTTTTACATACATATTTTTTAATTTTTTTTTTTTGTAGAAAAGCTTCAATATAAAGTAAAAAAGAAAATATTGTCTGTTTCAGCTATTGTTTGAAGGGGGCTGGCCTATTTCTGCTTTTAATATTAATAGCTTATCTTTTCTGCTTTTTTTGTCAGTTAAAAATACCTGTATTTTGGCTGTCAACCTTTAAAAGTCGGAAGTAATTTTAAATGAAATACAAGCTATTTTGGTTTTCGCCACTGACCAAAGAAGATTTAATCTGTTTACCATTTTGGTTAATTTGGAGCATTTATGATGTATTACAGCAATGTCAAATGAACAGCTAATGGATCATGGGAATCGGATGATGGATGACACAGATCAAGCCATTGAGAGGGGAAAAAGGGTTGGTTTATACCTTGAATATCACTATTTTTTTTTTCTTTCCAAATACATAGACTACTGGTGATTTTATAATTTGCTATAGTATTTTATTTGTCCTAGAGGCAAATGTTGTAGCTCCACATATTATGCTTGCTTACTTTTCATTGTCGTGATAATAGCAGTTAGTTAAGAAAATATATGGATGTTAGAGCACAATTTAATTGCTGGTAATGAATTTGACCTTCAAGTAATATATGGTCTTTCTTTTTTGTCAAACTGTTGTCTTGGTTGTGTCCTATTGTTTATTTAGTACCGTCTCGTCAGTTTACTTCCGTAAATATCTTATGACAATTTAACTATCTCTTTCGCAACATGTTCCTTCTCATTTAAATTAAAGAATACATTAAAGTTTGTTGTGTTTATATTAATCTAACATTATGCTCCTGAAACATTACCTTCCCAACCTTGCTTTTTATTCATATACAAGCTTAAATAAACTTGATATTGGATTATTGCTAAATCATGGAATCAGTGAAATAAGGATGAAAAAGTGTGAGGAAGTGGAGACAAAATATTTCTATATTTTGTTTTCAAAGGAAACACAAGCTTTTGTCTTACATAACCTTGTAGTCTTAAATTGAGTAGCAAAGTTGTTATACATACACCTCCTTGGGTACATGTGGAAAATATGTGCATTTTATATTAATTCACCTTAAATTAAACCACAATTGCACTCCATGTCCCCTCTGCTCCTCTAGAAGTTTGATGTACAGTGGAAGTTGTGAAAGAGAACTGAAAAATACTAAATGGTGTTTGATTTGAATATTCTGGATATACAAATTCTGTTGTCTATTTCATGTGGATAAAATTTGGAACTTCGCTGACAGTTTATTTTCATGAACCCTTCTGCAATAGATTGTTCAAGACACGGTAAATATTGGTACTGAGACTGCTGCAGCTCTTAAGGCACAGGTATGAATCTTATGCATAGCCTTCACCCCAGAAGTAGTCCAAGGAAAAAAAACTTGATTTTGACATGGGTACTAAGGGCTGTAACCTCTTCCTTTTGTAGACGGAACAAATGAGCAGAGTTGTCAATGAGCTGGATTCTATCCATTTTTCTATAAAGAAAGCATCTAAATTGGTCAAGGAAATCGGTAGGCAGGTCAATTTCTACAGAATCCACATCATTTTGTTCAGTATAGTTCCTAACTTACTTTATGAATCATTCATTGATAAACTTGCTCGCATTTTTGTAATAGGTTGCTACTGACAAGTGTATTATGGCATTACTTTTCCTCATCGTCATTGGAGTAATTGCTATCATTATTGTAAAGGTAAGGGAAATTTGCTTTCTAACTTTTTGGTTCAATTCAGAAATACCCTCTATTGTTGCTGTACTTCATGGTGAATTTATTGGTGCCTAGATGTGCCATGTTTACCTATGGTAGAAATTGCTTTGACAACACGTGGATGAAGCATTTAAGTTGCTTATGAAGCATAATATATTGATTTACTGATTAACCATGAAAAAGAACTCCTCCACTAGTCTTCACTAGGCATAGCTTTTGATGGCCTTTCACAGATTTACCGCTTTTAGTTTATGCATGTATTTTTATTATGTTGAAATTTTCTCGGATTATGATATTTGTAAGTACAACAAACAAAATTGCATTTCAAACTCTATTCAGTGCTTTTTGGGTTGTTAACAGACGGTCAAGATCAGGATGTCTTGATTTTTGTGTGAATGAATGTGATCATATAAATGCCAATTTTCTTTTTGTAAACGCCACCTTGGTTTCAGTTTACCTTGTAAAACTAGATTCAAGAAGTTACTTTCTTGCCAAACTGCTTATTTTACTGATTGATAAATTCTCTGACAATGCTCAAATTATGACTTACTATACTAAATTTTATCTTTCAAAATTTCAGCTTGTACATCCAGAGAACAAGGACATTCGCGACATTCCAGGATTAGCTCCTCCTGTTGTCACGAACAACAGAAGACTGCTTTGGAATCACAGTCAATTATTTTAA

Protein sequence

>MS.gene46386.t1

MDQLSAISEDLAEIDGRVADNFRALSNGFQKLEKIKDASRKSRQLEELTEKMRECKGLIKEFDKEVKALEARFDRETTKFLNEKKQSMIKELNSYVALKKQYASNIENKRIELFEGPNEGDTEENVLLASAMSNEQLMDHGNRMMDDTDQAIERGKRIVQDTVNIGTETAAALKAQTEQMSRVVNELDSIHFSIKKASKLVKEIGRQVATDKCIMALLFLIVIGVIAIIIVKLVHPENKDIRDIPGLAPPVVTNNRRLLWNHSQLF