Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene011609.t1 | XP_013457561.1 | 99.6 | 263 | 1 | 0 | 1 | 263 | 1 | 263 | 4.20E-135 | 490.7 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene011609.t1 | Q944A9 | 72.2 | 266 | 68 | 3 | 1 | 262 | 1 | 264 | 9.1e-99 | 361.3 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene011609.t1 | A0A072UPG8 | 99.6 | 263 | 1 | 0 | 1 | 263 | 1 | 263 | 3.0e-135 | 490.7 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene26787 | MS.gene011609 | PPI |
| MS.gene030153 | MS.gene011609 | PPI |
| MS.gene033967 | MS.gene011609 | PPI |
| MS.gene011609 | MS.gene064149 | PPI |
| MS.gene011609 | MS.gene68624 | PPI |
| MS.gene011609 | MS.gene062046 | PPI |
| MS.gene98405 | MS.gene011609 | PPI |
| MS.gene011609 | MS.gene068930 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene011609.t1 | MTR_4g099140 | 99.620 | 263 | 1 | 0 | 1 | 263 | 1 | 263 | 0.0 | 534 |
| MS.gene011609.t1 | MTR_2g045960 | 65.370 | 257 | 84 | 2 | 7 | 260 | 7 | 261 | 1.84e-110 | 319 |
| MS.gene011609.t1 | MTR_4g123910 | 64.202 | 257 | 87 | 2 | 7 | 260 | 7 | 261 | 2.98e-105 | 306 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene011609.t1 | AT2G35190 | 75.564 | 266 | 59 | 3 | 1 | 262 | 1 | 264 | 2.22e-135 | 382 |
| MS.gene011609.t1 | AT3G17440 | 63.953 | 258 | 87 | 2 | 7 | 260 | 7 | 262 | 7.40e-108 | 313 |
| MS.gene011609.t1 | AT1G48240 | 63.178 | 258 | 89 | 2 | 7 | 260 | 7 | 262 | 4.44e-106 | 308 |
| MS.gene011609.t1 | AT1G48240 | 63.380 | 213 | 72 | 2 | 52 | 260 | 1 | 211 | 2.64e-84 | 251 |
| MS.gene011609.t1 | AT3G17440 | 61.353 | 207 | 76 | 1 | 7 | 209 | 7 | 213 | 4.66e-84 | 251 |
Find 49 sgRNAs with CRISPR-Local
Find 229 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTCTTCTGTGTCGCCTTCAT+TGG | 0.242708 | 8.1:-23246545 | None:intergenic |
| TCAGAAGCTGGAGAAAATTA+AGG | 0.285108 | 8.1:+23245365 | MS.gene011609:CDS |
| AAGCCATTGAGAGGGGAAAA+AGG | 0.306993 | 8.1:+23247403 | MS.gene011609:CDS |
| GTTCAAGACACGGTAAATAT+TGG | 0.323026 | 8.1:+23248322 | MS.gene011609:CDS |
| TATAAAGAAAGCATCTAAAT+TGG | 0.326069 | 8.1:+23248526 | MS.gene011609:CDS |
| TAAAGAAGTCAAAGCTTTAG+AGG | 0.333294 | 8.1:+23246120 | MS.gene011609:CDS |
| TGCTACTGACAAGTGTATTA+TGG | 0.366980 | 8.1:+23248668 | MS.gene011609:CDS |
| CTTCTGTTGTTCGTGACAAC+AGG | 0.367521 | 8.1:-23249387 | None:intergenic |
| AAGGACATTCGCGACATTCC+AGG | 0.392891 | 8.1:+23249354 | MS.gene011609:CDS |
| TGAGACTGCTGCAGCTCTTA+AGG | 0.393912 | 8.1:+23248348 | MS.gene011609:CDS |
| TCGCGAATGTCCTTGTTCTC+TGG | 0.411929 | 8.1:-23249345 | None:intergenic |
| TCTTCTGTGTCGCCTTCATT+GGG | 0.414766 | 8.1:-23246544 | None:intergenic |
| TCTAAATTGGTCAAGGAAAT+CGG | 0.417319 | 8.1:+23248539 | MS.gene011609:CDS |
| GTCGGCGATCAGCGAGGATC+TGG | 0.427072 | 8.1:+23245190 | MS.gene011609:CDS |
| TAAGCGAATTGAACTCTTTG+AGG | 0.435458 | 8.1:+23246519 | MS.gene011609:CDS |
| AATGTCAAATGAACAGCTAA+TGG | 0.436817 | 8.1:+23247347 | MS.gene011609:CDS |
| GAAAATGTCTTGCTAGCTTC+CGG | 0.447441 | 8.1:+23246565 | MS.gene011609:CDS |
| AATGAACAGCTAATGGATCA+TGG | 0.468547 | 8.1:+23247354 | MS.gene011609:CDS |
| AGAAAATGCGAGAGTGTAAA+GGG | 0.476625 | 8.1:+23245427 | MS.gene011609:CDS |
| CGATAGAGCGCGGAAATTGT+CGG | 0.478777 | 8.1:-23245234 | None:intergenic |
| CGAACAACAGAAGACTGCTT+TGG | 0.487369 | 8.1:+23249397 | MS.gene011609:CDS |
| AGCTAATGGATCATGGGAAT+CGG | 0.490306 | 8.1:+23247361 | MS.gene011609:CDS |
| AATTGCTATCATTATTGTAA+AGG | 0.494738 | 8.1:+23248719 | MS.gene011609:CDS |
| GAGAAAATGCGAGAGTGTAA+AGG | 0.497667 | 8.1:+23245426 | MS.gene011609:CDS |
| AAGCGAATTGAACTCTTTGA+GGG | 0.501546 | 8.1:+23246520 | MS.gene011609:CDS |
| CTCTTTGAGGGACCCAATGA+AGG | 0.509954 | 8.1:+23246532 | MS.gene011609:CDS |
| CAGAAATGGATTTCAGAAGC+TGG | 0.516653 | 8.1:+23245353 | MS.gene011609:intron |
| ACAACAGGAGGAGCTAATCC+TGG | 0.528610 | 8.1:-23249372 | None:intergenic |
| GAGTAGAAAGAGCAGGCAAT+TGG | 0.528613 | 8.1:+23245392 | MS.gene011609:CDS |
| GAGCAGAGTTGTCAATGAGC+TGG | 0.530134 | 8.1:+23248487 | MS.gene011609:CDS |
| TGCTGCAGCTCTTAAGGCAC+AGG | 0.531146 | 8.1:+23248354 | MS.gene011609:CDS |
| ATGAACAGCTAATGGATCAT+GGG | 0.537163 | 8.1:+23247355 | MS.gene011609:CDS |
| GTTGAAAATGGATCAGTTGT+CGG | 0.540328 | 8.1:+23245172 | None:intergenic |
| GGTCAAGGAAATCGGTAGGC+AGG | 0.545431 | 8.1:+23248547 | MS.gene011609:CDS |
| GAGGATCTGGCGGAGATCGA+CGG | 0.558067 | 8.1:+23245203 | MS.gene011609:CDS |
| GGATCATGGGAATCGGATGA+TGG | 0.561416 | 8.1:+23247368 | MS.gene011609:CDS |
| GAAAGCATCTAAATTGGTCA+AGG | 0.580083 | 8.1:+23248532 | MS.gene011609:CDS |
| ACACAGATCAAGCCATTGAG+AGG | 0.592198 | 8.1:+23247394 | MS.gene011609:CDS |
| CACAGATCAAGCCATTGAGA+GGG | 0.597880 | 8.1:+23247395 | MS.gene011609:CDS |
| CTGTTGTTCGTGACAACAGG+AGG | 0.605031 | 8.1:-23249384 | None:intergenic |
| GGCGATCAGCGAGGATCTGG+CGG | 0.606362 | 8.1:+23245193 | MS.gene011609:CDS |
| GCTTGTACATCCAGAGAACA+AGG | 0.635136 | 8.1:+23249335 | MS.gene011609:intron |
| AGGATGCGAGTAGAAAGAGC+AGG | 0.636628 | 8.1:+23245385 | MS.gene011609:CDS |
| AATTGGTCAAGGAAATCGGT+AGG | 0.642065 | 8.1:+23248543 | MS.gene011609:CDS |
| GCAATAGATTGTTCAAGACA+CGG | 0.645457 | 8.1:+23248312 | MS.gene011609:intron |
| TAGATTCTTACGATAGAGCG+CGG | 0.658099 | 8.1:-23245244 | None:intergenic |
| CAATTACTCCAATGACGATG+AGG | 0.668385 | 8.1:-23248701 | None:intergenic |
| ACAGATCAAGCCATTGAGAG+GGG | 0.669219 | 8.1:+23247396 | MS.gene011609:CDS |
| TCAGTTGTCGGCGATCAGCG+AGG | 0.738571 | 8.1:+23245184 | MS.gene011609:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAAAATATGTATGTAAAAA+AGG | - | chr8.1:23247041-23247060 | None:intergenic | 10.0% |
| !! | AAAAAAAATAGTGATATTCA+AGG | - | chr8.1:23247440-23247459 | None:intergenic | 15.0% |
| !! | AAATTGTCATAAGATATTTA+CGG | - | chr8.1:23247738-23247757 | None:intergenic | 15.0% |
| !! | ATACACATTTATATAAAAGT+GGG | + | chr8.1:23245753-23245772 | MS.gene011609:intron | 15.0% |
| !! | ATATTTAGTAATTTAGTCAA+TGG | + | chr8.1:23246711-23246730 | MS.gene011609:intron | 15.0% |
| !! | TTAATATTAAAAGCAGAAAT+AGG | - | chr8.1:23247147-23247166 | None:intergenic | 15.0% |
| !!! | ATTCTTTAATTTAAATGAGA+AGG | - | chr8.1:23247784-23247803 | None:intergenic | 15.0% |
| !!! | TCGTTTTCAATATTTTTAAA+GGG | + | chr8.1:23245956-23245975 | MS.gene011609:intron | 15.0% |
| !!! | TTGTTTTTTATTGATATGTT+CGG | + | chr8.1:23245469-23245488 | MS.gene011609:intron | 15.0% |
| !!! | TTTCTATATTTTGTTTTCAA+AGG | + | chr8.1:23247978-23247997 | MS.gene011609:intron | 15.0% |
| !! | AATGATTCATAAAGTAAGTT+AGG | - | chr8.1:23248614-23248633 | None:intergenic | 20.0% |
| !! | AATTGCTATCATTATTGTAA+AGG | + | chr8.1:23248719-23248738 | MS.gene011609:CDS | 20.0% |
| !! | AGCTTAAATAAACTTGATAT+TGG | + | chr8.1:23247889-23247908 | MS.gene011609:intron | 20.0% |
| !! | ATACATACATAAACTAAAAG+CGG | - | chr8.1:23248997-23249016 | None:intergenic | 20.0% |
| !! | ATGCTTTCTTTATAGAAAAA+TGG | - | chr8.1:23248520-23248539 | None:intergenic | 20.0% |
| !! | CAGTTAGTTAAGAAAATATA+TGG | + | chr8.1:23247583-23247602 | MS.gene011609:intron | 20.0% |
| !! | GATACACATTTATATAAAAG+TGG | + | chr8.1:23245752-23245771 | MS.gene011609:intron | 20.0% |
| !! | TAAACAGATTAAATCTTCTT+TGG | - | chr8.1:23247287-23247306 | None:intergenic | 20.0% |
| !! | TAATCTAGTGTATATATTGT+TGG | + | chr8.1:23246064-23246083 | MS.gene011609:intron | 20.0% |
| !! | TATCATTATTGTAAAGGTAA+GGG | + | chr8.1:23248725-23248744 | MS.gene011609:intron | 20.0% |
| !! | TATTTCATGTGGATAAAATT+TGG | + | chr8.1:23248254-23248273 | MS.gene011609:intron | 20.0% |
| !! | TTGTATATGAATAAAAAGCA+AGG | - | chr8.1:23247870-23247889 | None:intergenic | 20.0% |
| !!! | AAAAAAACTTGATTTTGACA+TGG | + | chr8.1:23248421-23248440 | MS.gene011609:intron | 20.0% |
| !!! | AAAAAACTTGATTTTGACAT+GGG | + | chr8.1:23248422-23248441 | MS.gene011609:intron | 20.0% |
| !!! | AAAATCAAGTTTTTTTTCCT+TGG | - | chr8.1:23248417-23248436 | None:intergenic | 20.0% |
| !!! | AAATGAAATACAAGCTATTT+TGG | + | chr8.1:23247248-23247267 | MS.gene011609:intron | 20.0% |
| !!! | AAATTTGCTTTCTAACTTTT+TGG | + | chr8.1:23248748-23248767 | MS.gene011609:intron | 20.0% |
| !!! | ACTTCATGTTTTAAGTTTAT+TGG | + | chr8.1:23246262-23246281 | MS.gene011609:intron | 20.0% |
| !!! | AGTTAAAAATACCTGTATTT+TGG | + | chr8.1:23247194-23247213 | MS.gene011609:intron | 20.0% |
| !!! | ATTTAATCTGTTTACCATTT+TGG | + | chr8.1:23247293-23247312 | MS.gene011609:intron | 20.0% |
| !!! | CTCGTTTTCAATATTTTTAA+AGG | + | chr8.1:23245955-23245974 | MS.gene011609:intron | 20.0% |
| !!! | CTTTTTCTCATTCAAAAATT+TGG | - | chr8.1:23246167-23246186 | None:intergenic | 20.0% |
| !!! | TACAATTGTGGTTTAATTTA+AGG | - | chr8.1:23248117-23248136 | None:intergenic | 20.0% |
| !!! | TATAAAGAAAGCATCTAAAT+TGG | + | chr8.1:23248526-23248545 | MS.gene011609:CDS | 20.0% |
| !!! | TGATTGTATAAAATTGATTC+TGG | + | chr8.1:23245688-23245707 | MS.gene011609:intron | 20.0% |
| !!! | TTGATTTTTTTGTTCAGAAA+TGG | + | chr8.1:23245339-23245358 | MS.gene011609:intron | 20.0% |
| !!! | TTTTAGCTTAGAAACAATTT+TGG | + | chr8.1:23245828-23245847 | MS.gene011609:intron | 20.0% |
| ! | AAAAATCACATTGATCTTTC+AGG | - | chr8.1:23245622-23245641 | None:intergenic | 25.0% |
| ! | AAAGACCATATATTACTTGA+AGG | - | chr8.1:23247647-23247666 | None:intergenic | 25.0% |
| ! | AACATGAAGTAGCAAAATTA+AGG | - | chr8.1:23246252-23246271 | None:intergenic | 25.0% |
| ! | AAGTTAAAAGTCAATTGTAG+AGG | + | chr8.1:23245792-23245811 | MS.gene011609:intron | 25.0% |
| ! | AATCAGTAAAATAAGCAGTT+TGG | - | chr8.1:23249250-23249269 | None:intergenic | 25.0% |
| ! | ACATGAAGTAGCAAAATTAA+GGG | - | chr8.1:23246251-23246270 | None:intergenic | 25.0% |
| ! | ACTTCTGCATTATTTCATAT+TGG | + | chr8.1:23246908-23246927 | MS.gene011609:intron | 25.0% |
| ! | AGCTAAAAGTGATTTATGTT+TGG | + | chr8.1:23245730-23245749 | MS.gene011609:intron | 25.0% |
| ! | ATAAAAAACAACCAGGAAAA+AGG | - | chr8.1:23245460-23245479 | None:intergenic | 25.0% |
| ! | ATAAATCAAGCATAACAAGA+AGG | - | chr8.1:23246783-23246802 | None:intergenic | 25.0% |
| ! | ATATGAATAAAAAGCAAGGT+TGG | - | chr8.1:23247866-23247885 | None:intergenic | 25.0% |
| ! | ATTGGATTATTGCTAAATCA+TGG | + | chr8.1:23247907-23247926 | MS.gene011609:intron | 25.0% |
| ! | CATATCAATAAAAAACAACC+AGG | - | chr8.1:23245467-23245486 | None:intergenic | 25.0% |
| ! | CTAGTGAAATAAAATGATCA+TGG | - | chr8.1:23246663-23246682 | None:intergenic | 25.0% |
| ! | CTATCATTATTGTAAAGGTA+AGG | + | chr8.1:23248724-23248743 | MS.gene011609:intron | 25.0% |
| ! | CTTCTGCATTATTTCATATT+GGG | + | chr8.1:23246909-23246928 | MS.gene011609:intron | 25.0% |
| ! | GAAAACGAGTTATTTATGTT+TGG | - | chr8.1:23245944-23245963 | None:intergenic | 25.0% |
| ! | GAGAACTGAAAAATACTAAA+TGG | + | chr8.1:23248191-23248210 | MS.gene011609:intron | 25.0% |
| ! | TATGAATAAAAAGCAAGGTT+GGG | - | chr8.1:23247865-23247884 | None:intergenic | 25.0% |
| ! | TATGTTTGTGTTTGATTATG+TGG | + | chr8.1:23245641-23245660 | MS.gene011609:intron | 25.0% |
| ! | TTTGACCTTCAAGTAATATA+TGG | + | chr8.1:23247639-23247658 | MS.gene011609:intron | 25.0% |
| !! | AAATTACTTCCGACTTTTAA+AGG | - | chr8.1:23247227-23247246 | None:intergenic | 25.0% |
| !! | CTTGATGTTGTTCATTTTAT+TGG | + | chr8.1:23245532-23245551 | MS.gene011609:intron | 25.0% |
| !! | TACTCAATTTAAGACTACAA+GGG | - | chr8.1:23248028-23248047 | None:intergenic | 25.0% |
| !! | TTGATTGTTTGATTCCATTT+TGG | + | chr8.1:23245979-23245998 | MS.gene011609:intron | 25.0% |
| !!! | AGAATTGATTTTGACATGTT+TGG | - | chr8.1:23245882-23245901 | None:intergenic | 25.0% |
| !!! | CATGATCATTTTATTTCACT+AGG | + | chr8.1:23246661-23246680 | MS.gene011609:intron | 25.0% |
| !!! | GTTTACCATTTTGGTTAATT+TGG | + | chr8.1:23247302-23247321 | MS.gene011609:intron | 25.0% |
| !!! | TACTCCTTTAGAATCAATTT+AGG | + | chr8.1:23245901-23245920 | MS.gene011609:intron | 25.0% |
| !!! | TAGTATTTTATTTGTCCTAG+AGG | + | chr8.1:23247504-23247523 | MS.gene011609:intron | 25.0% |
| !!! | TTCTTGAATCTAGTTTTACA+AGG | - | chr8.1:23249215-23249234 | None:intergenic | 25.0% |
| AAGTAAGCAAGCATAATATG+TGG | - | chr8.1:23247544-23247563 | None:intergenic | 30.0% | |
| AATGTCAAATGAACAGCTAA+TGG | + | chr8.1:23247347-23247366 | MS.gene011609:CDS | 30.0% | |
| AATTTAGGCTCATCTAAAAG+TGG | + | chr8.1:23245916-23245935 | MS.gene011609:intron | 30.0% | |
| ATCATGGAATCAGTGAAATA+AGG | + | chr8.1:23247923-23247942 | MS.gene011609:intron | 30.0% | |
| ATGCTCCAAATTAACCAAAA+TGG | - | chr8.1:23247310-23247329 | None:intergenic | 30.0% | |
| ATTAAATCTTCTTTGGTCAG+TGG | - | chr8.1:23247280-23247299 | None:intergenic | 30.0% | |
| ATTCTGTTGTCTATTTCATG+TGG | + | chr8.1:23248243-23248262 | MS.gene011609:intron | 30.0% | |
| ATTTCTACCATAGGTAAACA+TGG | - | chr8.1:23248839-23248858 | None:intergenic | 30.0% | |
| CATGAAGTAGCAAAATTAAG+GGG | - | chr8.1:23246250-23246269 | None:intergenic | 30.0% | |
| CATTATTTCATATTGGGAGA+TGG | + | chr8.1:23246915-23246934 | MS.gene011609:intron | 30.0% | |
| CTATACTGAACAAAATGATG+TGG | - | chr8.1:23248589-23248608 | None:intergenic | 30.0% | |
| GAACAAAATGAGAGATTCTA+AGG | - | chr8.1:23246411-23246430 | None:intergenic | 30.0% | |
| GACGGTACTAAATAAACAAT+AGG | - | chr8.1:23247701-23247720 | None:intergenic | 30.0% | |
| GTAATTCATGGATCAAAACT+TGG | - | chr8.1:23246018-23246037 | None:intergenic | 30.0% | |
| GTACTTCATGGTGAATTTAT+TGG | + | chr8.1:23248801-23248820 | MS.gene011609:intron | 30.0% | |
| TCTAAATTGGTCAAGGAAAT+CGG | + | chr8.1:23248539-23248558 | MS.gene011609:CDS | 30.0% | |
| TGTTTCAGCTATTGTTTGAA+GGG | + | chr8.1:23247115-23247134 | MS.gene011609:intron | 30.0% | |
| TTAGAGCACAATTTAATTGC+TGG | + | chr8.1:23247609-23247628 | MS.gene011609:intron | 30.0% | |
| TTGAACAATCTATTGCAGAA+GGG | - | chr8.1:23248308-23248327 | None:intergenic | 30.0% | |
| TTTCCAAATACATAGACTAC+TGG | + | chr8.1:23247463-23247482 | MS.gene011609:intron | 30.0% | |
| ! | AAACTCTATTCAGTGCTTTT+TGG | + | chr8.1:23249082-23249101 | MS.gene011609:intron | 30.0% |
| ! | AATAAGGATGAAAAAGTGTG+AGG | + | chr8.1:23247939-23247958 | MS.gene011609:intron | 30.0% |
| ! | CTACTCAATTTAAGACTACA+AGG | - | chr8.1:23248029-23248048 | None:intergenic | 30.0% |
| ! | TAAAGAAGTCAAAGCTTTAG+AGG | + | chr8.1:23246120-23246139 | MS.gene011609:CDS | 30.0% |
| ! | TGAGCCTAAATTGATTCTAA+AGG | - | chr8.1:23245908-23245927 | None:intergenic | 30.0% |
| ! | TTTTTGTCAAACTGTTGTCT+TGG | + | chr8.1:23247669-23247688 | MS.gene011609:intron | 30.0% |
| !! | AACTCTATTCAGTGCTTTTT+GGG | + | chr8.1:23249083-23249102 | MS.gene011609:intron | 30.0% |
| !! | AGTTACTCAGTTTTTAGACA+AGG | + | chr8.1:23246745-23246764 | MS.gene011609:intron | 30.0% |
| !! | CATTGATCTTTCAGGTTAAT+AGG | - | chr8.1:23245614-23245633 | None:intergenic | 30.0% |
| !! | GGTGTTTGATTTGAATATTC+TGG | + | chr8.1:23248212-23248231 | MS.gene011609:intron | 30.0% |
| !!! | TTGTTGGATCTGTTTTTTTC+AGG | + | chr8.1:23246080-23246099 | MS.gene011609:intron | 30.0% |
| AAAAGCGGTAAATCTGTGAA+AGG | - | chr8.1:23248982-23249001 | None:intergenic | 35.0% | |
| AAGCGAATTGAACTCTTTGA+GGG | + | chr8.1:23246520-23246539 | MS.gene011609:CDS | 35.0% | |
| AATAAAAAGCAAGGTTGGGA+AGG | - | chr8.1:23247861-23247880 | None:intergenic | 35.0% | |
| ACTGTACATCAAACTTCTAG+AGG | - | chr8.1:23248158-23248177 | None:intergenic | 35.0% | |
| ATAACAAGAAGGTAGAAGCA+CGG | - | chr8.1:23246772-23246791 | None:intergenic | 35.0% | |
| ATGAAGTACAGCAACAATAG+AGG | - | chr8.1:23248790-23248809 | None:intergenic | 35.0% | |
| ATTGTGACTGTATGTATGAG+CGG | + | chr8.1:23246835-23246854 | MS.gene011609:intron | 35.0% | |
| CATGAGACAGAAATTTGAAG+GGG | - | chr8.1:23245295-23245314 | None:intergenic | 35.0% | |
| CTGTTTCAGCTATTGTTTGA+AGG | + | chr8.1:23247114-23247133 | MS.gene011609:intron | 35.0% | |
| CTTGAACAATCTATTGCAGA+AGG | - | chr8.1:23248309-23248328 | None:intergenic | 35.0% | |
| GAATGAGAAAAAGCAGTCAA+TGG | + | chr8.1:23246174-23246193 | MS.gene011609:CDS | 35.0% | |
| GCAATAGATTGTTCAAGACA+CGG | + | chr8.1:23248312-23248331 | MS.gene011609:intron | 35.0% | |
| GCATGAGACAGAAATTTGAA+GGG | - | chr8.1:23245296-23245315 | None:intergenic | 35.0% | |
| GTCAAAGCAATTTCTACCAT+AGG | - | chr8.1:23248848-23248867 | None:intergenic | 35.0% | |
| GTTCAAGACACGGTAAATAT+TGG | + | chr8.1:23248322-23248341 | MS.gene011609:CDS | 35.0% | |
| GTTTCAGCTATTGTTTGAAG+GGG | + | chr8.1:23247116-23247135 | MS.gene011609:intron | 35.0% | |
| TAAGCGAATTGAACTCTTTG+AGG | + | chr8.1:23246519-23246538 | MS.gene011609:CDS | 35.0% | |
| TACAAGGAAAACTGAAACCA+AGG | - | chr8.1:23249199-23249218 | None:intergenic | 35.0% | |
| TCACCAGTAGTCTATGTATT+TGG | - | chr8.1:23247469-23247488 | None:intergenic | 35.0% | |
| TCAGAAGCTGGAGAAAATTA+AGG | + | chr8.1:23245365-23245384 | MS.gene011609:CDS | 35.0% | |
| TCATTTGTTCCGTCTACAAA+AGG | - | chr8.1:23248469-23248488 | None:intergenic | 35.0% | |
| TCTAGAAGTTTGATGTACAG+TGG | + | chr8.1:23248157-23248176 | MS.gene011609:intron | 35.0% | |
| TCTATTGTTGCTGTACTTCA+TGG | + | chr8.1:23248789-23248808 | MS.gene011609:intron | 35.0% | |
| TGAAGGGGAAATCAAAACAA+TGG | - | chr8.1:23245280-23245299 | None:intergenic | 35.0% | |
| TGAAGTACAGCAACAATAGA+GGG | - | chr8.1:23248789-23248808 | None:intergenic | 35.0% | |
| TGCATGAGACAGAAATTTGA+AGG | - | chr8.1:23245297-23245316 | None:intergenic | 35.0% | |
| TGCTACTGACAAGTGTATTA+TGG | + | chr8.1:23248668-23248687 | MS.gene011609:CDS | 35.0% | |
| TGTTATACATACACCTCCTT+GGG | + | chr8.1:23248055-23248074 | MS.gene011609:intron | 35.0% | |
| TTGTTATACATACACCTCCT+TGG | + | chr8.1:23248054-23248073 | MS.gene011609:intron | 35.0% | |
| TTTCAGCTATTGTTTGAAGG+GGG | + | chr8.1:23247117-23247136 | MS.gene011609:intron | 35.0% | |
| ! | AATGAACAGCTAATGGATCA+TGG | + | chr8.1:23247354-23247373 | MS.gene011609:CDS | 35.0% |
| ! | AATGGTAAGATGTTTAGCTC+TGG | + | chr8.1:23246192-23246211 | MS.gene011609:intron | 35.0% |
| ! | AGAAAATGCGAGAGTGTAAA+GGG | + | chr8.1:23245427-23245446 | MS.gene011609:CDS | 35.0% |
| ! | AGATCATAGAAGTGTGAGAA+AGG | - | chr8.1:23247014-23247033 | None:intergenic | 35.0% |
| ! | ATATTTTCCACATGTACCCA+AGG | - | chr8.1:23248074-23248093 | None:intergenic | 35.0% |
| ! | ATGAACAGCTAATGGATCAT+GGG | + | chr8.1:23247355-23247374 | MS.gene011609:CDS | 35.0% |
| ! | CTTACTTGTTGATGCTATCA+AGG | - | chr8.1:23246454-23246473 | None:intergenic | 35.0% |
| ! | CTTGCTCGCATTTTTGTAAT+AGG | + | chr8.1:23248644-23248663 | MS.gene011609:intron | 35.0% |
| ! | GAGATTCTAAGGAAGCAAAA+TGG | - | chr8.1:23246400-23246419 | None:intergenic | 35.0% |
| ! | TAACCTCTTCCTTTTGTAGA+CGG | + | chr8.1:23248457-23248476 | MS.gene011609:intron | 35.0% |
| ! | TCATTTTGTTCTTGCTTGAG+TGG | + | chr8.1:23246420-23246439 | MS.gene011609:intron | 35.0% |
| ! | TTTACACTCTCGCATTTTCT+CGG | - | chr8.1:23245427-23245446 | None:intergenic | 35.0% |
| ! | TTTTTCCTTGGACTACTTCT+GGG | - | chr8.1:23248405-23248424 | None:intergenic | 35.0% |
| !! | GAAAGCATCTAAATTGGTCA+AGG | + | chr8.1:23248532-23248551 | MS.gene011609:CDS | 35.0% |
| !! | GACATGTTTGGATGTTTTAG+CGG | - | chr8.1:23245870-23245889 | None:intergenic | 35.0% |
| !! | GATTTTGACATGGGTACTAA+GGG | + | chr8.1:23248431-23248450 | MS.gene011609:intron | 35.0% |
| !! | GTTTGATTCCATTTTGGCAT+TGG | + | chr8.1:23245985-23246004 | MS.gene011609:intron | 35.0% |
| !! | TGATTTTGACATGGGTACTA+AGG | + | chr8.1:23248430-23248449 | MS.gene011609:intron | 35.0% |
| !! | TTACTTTTCCTCATCGTCAT+TGG | + | chr8.1:23248693-23248712 | MS.gene011609:CDS | 35.0% |
| !!! | CTTTTTGGGTTGTTAACAGA+CGG | + | chr8.1:23249097-23249116 | MS.gene011609:intron | 35.0% |
| !!! | TTTTTTCCTTGGACTACTTC+TGG | - | chr8.1:23248406-23248425 | None:intergenic | 35.0% |
| AAGGAAAACTGAAACCAAGG+TGG | - | chr8.1:23249196-23249215 | None:intergenic | 40.0% | |
| AAGGTTGACAGCCAAAATAC+AGG | - | chr8.1:23247208-23247227 | None:intergenic | 40.0% | |
| AATTACCGTGATTAGTGGTC+TGG | + | chr8.1:23246032-23246051 | MS.gene011609:intron | 40.0% | |
| AATTGGTCAAGGAAATCGGT+AGG | + | chr8.1:23248543-23248562 | MS.gene011609:CDS | 40.0% | |
| ACGGAAGTAAAATGACGAGA+CGG | - | chr8.1:23247719-23247738 | None:intergenic | 40.0% | |
| AGATGTGCCATGTTTACCTA+TGG | + | chr8.1:23248829-23248848 | MS.gene011609:intron | 40.0% | |
| AGGGGAAATCAAAACAATGG+AGG | - | chr8.1:23245277-23245296 | None:intergenic | 40.0% | |
| CAATTACTCCAATGACGATG+AGG | - | chr8.1:23248704-23248723 | None:intergenic | 40.0% | |
| CACTTTCACTGAAACGATTG+AGG | - | chr8.1:23246867-23246886 | None:intergenic | 40.0% | |
| CCACTAATCACGGTAATTCA+TGG | - | chr8.1:23246030-23246049 | None:intergenic | 40.0% | |
| CCATGAATTACCGTGATTAG+TGG | + | chr8.1:23246027-23246046 | MS.gene011609:intron | 40.0% | |
| GAAATTGCTTTGACAACACG+TGG | + | chr8.1:23248854-23248873 | MS.gene011609:intron | 40.0% | |
| TAGATTCTTACGATAGAGCG+CGG | - | chr8.1:23245247-23245266 | None:intergenic | 40.0% | |
| TAGGTAAACATGGCACATCT+AGG | - | chr8.1:23248829-23248848 | None:intergenic | 40.0% | |
| TGCTTGATTTATACGACTCG+TGG | + | chr8.1:23246791-23246810 | MS.gene011609:intron | 40.0% | |
| ! | AGCTAATGGATCATGGGAAT+CGG | + | chr8.1:23247361-23247380 | MS.gene011609:CDS | 40.0% |
| ! | AGGGTAATGTTCCTTTTTCC+TGG | + | chr8.1:23245446-23245465 | MS.gene011609:intron | 40.0% |
| ! | CAGAAATGGATTTCAGAAGC+TGG | + | chr8.1:23245353-23245372 | MS.gene011609:intron | 40.0% |
| ! | GAAAATGTCTTGCTAGCTTC+CGG | + | chr8.1:23246565-23246584 | MS.gene011609:CDS | 40.0% |
| ! | GAGAAAATGCGAGAGTGTAA+AGG | + | chr8.1:23245426-23245445 | MS.gene011609:CDS | 40.0% |
| ! | GATGAAAAAGTGTGAGGAAG+TGG | + | chr8.1:23247945-23247964 | MS.gene011609:intron | 40.0% |
| ! | GCACATTTTCAACACAGATC+TGG | - | chr8.1:23245586-23245605 | None:intergenic | 40.0% |
| ! | GGCTGTCAACCTTTAAAAGT+CGG | + | chr8.1:23247215-23247234 | MS.gene011609:intron | 40.0% |
| ! | TAACAAGAAGGTAGAAGCAC+GGG | - | chr8.1:23246771-23246790 | None:intergenic | 40.0% |
| ! | TCACTAGGCATAGCTTTTGA+TGG | + | chr8.1:23248956-23248975 | MS.gene011609:intron | 40.0% |
| ! | TCTTTTTGTAAACGCCACCT+TGG | + | chr8.1:23249179-23249198 | MS.gene011609:intron | 40.0% |
| ! | TTTTCCTTGGACTACTTCTG+GGG | - | chr8.1:23248404-23248423 | None:intergenic | 40.0% |
| !! | AGTGGAGGAGTTCTTTTTCA+TGG | - | chr8.1:23248931-23248950 | None:intergenic | 40.0% |
| AAGAGCCAGACCACTAATCA+CGG | - | chr8.1:23246040-23246059 | None:intergenic | 45.0% | |
| AAGCCATTGAGAGGGGAAAA+AGG | + | chr8.1:23247403-23247422 | MS.gene011609:CDS | 45.0% | |
| ACACAGATCAAGCCATTGAG+AGG | + | chr8.1:23247394-23247413 | MS.gene011609:CDS | 45.0% | |
| ACAGATCAAGCCATTGAGAG+GGG | + | chr8.1:23247396-23247415 | MS.gene011609:CDS | 45.0% | |
| AGCCATTGAGAGGGGAAAAA+GGG | + | chr8.1:23247404-23247423 | MS.gene011609:CDS | 45.0% | |
| ATTGAGAGGGGAAAAAGGGT+TGG | + | chr8.1:23247408-23247427 | MS.gene011609:intron | 45.0% | |
| CACAGATCAAGCCATTGAGA+GGG | + | chr8.1:23247395-23247414 | MS.gene011609:CDS | 45.0% | |
| CGAACAACAGAAGACTGCTT+TGG | + | chr8.1:23249397-23249416 | MS.gene011609:CDS | 45.0% | |
| CTATGCCTAGTGAAGACTAG+TGG | - | chr8.1:23248949-23248968 | None:intergenic | 45.0% | |
| CTTCTGTTGTTCGTGACAAC+AGG | - | chr8.1:23249390-23249409 | None:intergenic | 45.0% | |
| GAAGAAGCCAGCATACTTAC+CGG | - | chr8.1:23246587-23246606 | None:intergenic | 45.0% | |
| GAGCTACAACATTTGCCTCT+AGG | - | chr8.1:23247522-23247541 | None:intergenic | 45.0% | |
| GAGTAGAAAGAGCAGGCAAT+TGG | + | chr8.1:23245392-23245411 | MS.gene011609:CDS | 45.0% | |
| GCTTGTACATCCAGAGAACA+AGG | + | chr8.1:23249335-23249354 | MS.gene011609:intron | 45.0% | |
| GGTTGGGAAGGTAATGTTTC+AGG | - | chr8.1:23247849-23247868 | None:intergenic | 45.0% | |
| GTGTGCTTCCAATGCCAAAA+TGG | - | chr8.1:23245996-23246015 | None:intergenic | 45.0% | |
| GTTAACAGACGGTCAAGATC+AGG | + | chr8.1:23249108-23249127 | MS.gene011609:intron | 45.0% | |
| GTTCCGTCTACAAAAGGAAG+AGG | - | chr8.1:23248463-23248482 | None:intergenic | 45.0% | |
| TCTTCTGTGTCGCCTTCATT+GGG | - | chr8.1:23246547-23246566 | None:intergenic | 45.0% | |
| TTCTTCTGTGTCGCCTTCAT+TGG | - | chr8.1:23246548-23246567 | None:intergenic | 45.0% | |
| ! | AAACTTCTAGAGGAGCAGAG+GGG | - | chr8.1:23248148-23248167 | None:intergenic | 45.0% |
| ! | AACCCTTTTTCCCCTCTCAA+TGG | - | chr8.1:23247409-23247428 | None:intergenic | 45.0% |
| ! | CAAACTTCTAGAGGAGCAGA+GGG | - | chr8.1:23248149-23248168 | None:intergenic | 45.0% |
| ! | TCAAACTTCTAGAGGAGCAG+AGG | - | chr8.1:23248150-23248169 | None:intergenic | 45.0% |
| ! | TTTTCCACATGTACCCAAGG+AGG | - | chr8.1:23248071-23248090 | None:intergenic | 45.0% |
| AAGGACATTCGCGACATTCC+AGG | + | chr8.1:23249354-23249373 | MS.gene011609:CDS | 50.0% | |
| ACAACAGGAGGAGCTAATCC+TGG | - | chr8.1:23249375-23249394 | None:intergenic | 50.0% | |
| AGCTATTGTTTGAAGGGGGC+TGG | + | chr8.1:23247121-23247140 | MS.gene011609:intron | 50.0% | |
| AGGATGCGAGTAGAAAGAGC+AGG | + | chr8.1:23245385-23245404 | MS.gene011609:CDS | 50.0% | |
| CGATAGAGCGCGGAAATTGT+CGG | - | chr8.1:23245237-23245256 | None:intergenic | 50.0% | |
| CTAGCTTCCGGTAAGTATGC+TGG | + | chr8.1:23246577-23246596 | MS.gene011609:intron | 50.0% | |
| CTGTTGTTCGTGACAACAGG+AGG | - | chr8.1:23249387-23249406 | None:intergenic | 50.0% | |
| GAGCAGAGTTGTCAATGAGC+TGG | + | chr8.1:23248487-23248506 | MS.gene011609:CDS | 50.0% | |
| GGATCATGGGAATCGGATGA+TGG | + | chr8.1:23247368-23247387 | MS.gene011609:CDS | 50.0% | |
| GGGGACATGGAGTACAATTG+TGG | - | chr8.1:23248129-23248148 | None:intergenic | 50.0% | |
| GTGACTGTATGTATGAGCGG+AGG | + | chr8.1:23246838-23246857 | MS.gene011609:intron | 50.0% | |
| TACACCTCCTTGGGTACATG+TGG | + | chr8.1:23248064-23248083 | MS.gene011609:intron | 50.0% | |
| TCGCGAATGTCCTTGTTCTC+TGG | - | chr8.1:23249348-23249367 | None:intergenic | 50.0% | |
| TGAGACTGCTGCAGCTCTTA+AGG | + | chr8.1:23248348-23248367 | MS.gene011609:CDS | 50.0% | |
| TGCCTAGTGAAGACTAGTGG+AGG | - | chr8.1:23248946-23248965 | None:intergenic | 50.0% | |
| TTCACCCCAGAAGTAGTCCA+AGG | + | chr8.1:23248397-23248416 | MS.gene011609:intron | 50.0% | |
| ! | CTCTTTGAGGGACCCAATGA+AGG | + | chr8.1:23246532-23246551 | MS.gene011609:CDS | 50.0% |
| !! | CTCCTCCACTAGTCTTCACT+AGG | + | chr8.1:23248941-23248960 | MS.gene011609:intron | 50.0% |
| !! | TTGGACTACTTCTGGGGTGA+AGG | - | chr8.1:23248398-23248417 | None:intergenic | 50.0% |
| GGTCAAGGAAATCGGTAGGC+AGG | + | chr8.1:23248547-23248566 | MS.gene011609:CDS | 55.0% | |
| TGCTGCAGCTCTTAAGGCAC+AGG | + | chr8.1:23248354-23248373 | MS.gene011609:CDS | 55.0% | |
| CTAGAGGAGCAGAGGGGACA+TGG | - | chr8.1:23248142-23248161 | None:intergenic | 60.0% | |
| GAGGATCTGGCGGAGATCGA+CGG | + | chr8.1:23245203-23245222 | MS.gene011609:CDS | 60.0% | |
| TCAGTTGTCGGCGATCAGCG+AGG | + | chr8.1:23245184-23245203 | MS.gene011609:CDS | 60.0% | |
| GGCGATCAGCGAGGATCTGG+CGG | + | chr8.1:23245193-23245212 | MS.gene011609:CDS | 65.0% | |
| GTCGGCGATCAGCGAGGATC+TGG | + | chr8.1:23245190-23245209 | MS.gene011609:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8.1 | gene | 23245179 | 23249431 | 23245179 | ID=MS.gene011609 |
| chr8.1 | mRNA | 23245179 | 23249431 | 23245179 | ID=MS.gene011609.t1;Parent=MS.gene011609 |
| chr8.1 | exon | 23245179 | 23245255 | 23245179 | ID=MS.gene011609.t1.exon1;Parent=MS.gene011609.t1 |
| chr8.1 | CDS | 23245179 | 23245255 | 23245179 | ID=cds.MS.gene011609.t1;Parent=MS.gene011609.t1 |
| chr8.1 | exon | 23245356 | 23245448 | 23245356 | ID=MS.gene011609.t1.exon2;Parent=MS.gene011609.t1 |
| chr8.1 | CDS | 23245356 | 23245448 | 23245356 | ID=cds.MS.gene011609.t1;Parent=MS.gene011609.t1 |
| chr8.1 | exon | 23246102 | 23246195 | 23246102 | ID=MS.gene011609.t1.exon3;Parent=MS.gene011609.t1 |
| chr8.1 | CDS | 23246102 | 23246195 | 23246102 | ID=cds.MS.gene011609.t1;Parent=MS.gene011609.t1 |
| chr8.1 | exon | 23246346 | 23246383 | 23246346 | ID=MS.gene011609.t1.exon4;Parent=MS.gene011609.t1 |
| chr8.1 | CDS | 23246346 | 23246383 | 23246346 | ID=cds.MS.gene011609.t1;Parent=MS.gene011609.t1 |
| chr8.1 | exon | 23246498 | 23246586 | 23246498 | ID=MS.gene011609.t1.exon5;Parent=MS.gene011609.t1 |
| chr8.1 | CDS | 23246498 | 23246586 | 23246498 | ID=cds.MS.gene011609.t1;Parent=MS.gene011609.t1 |
| chr8.1 | exon | 23247346 | 23247425 | 23247346 | ID=MS.gene011609.t1.exon6;Parent=MS.gene011609.t1 |
| chr8.1 | CDS | 23247346 | 23247425 | 23247346 | ID=cds.MS.gene011609.t1;Parent=MS.gene011609.t1 |
| chr8.1 | exon | 23248319 | 23248375 | 23248319 | ID=MS.gene011609.t1.exon7;Parent=MS.gene011609.t1 |
| chr8.1 | CDS | 23248319 | 23248375 | 23248319 | ID=cds.MS.gene011609.t1;Parent=MS.gene011609.t1 |
| chr8.1 | exon | 23248476 | 23248568 | 23248476 | ID=MS.gene011609.t1.exon8;Parent=MS.gene011609.t1 |
| chr8.1 | CDS | 23248476 | 23248568 | 23248476 | ID=cds.MS.gene011609.t1;Parent=MS.gene011609.t1 |
| chr8.1 | exon | 23248666 | 23248740 | 23248666 | ID=MS.gene011609.t1.exon9;Parent=MS.gene011609.t1 |
| chr8.1 | CDS | 23248666 | 23248740 | 23248666 | ID=cds.MS.gene011609.t1;Parent=MS.gene011609.t1 |
| chr8.1 | exon | 23249336 | 23249431 | 23249336 | ID=MS.gene011609.t1.exon10;Parent=MS.gene011609.t1 |
| chr8.1 | CDS | 23249336 | 23249431 | 23249336 | ID=cds.MS.gene011609.t1;Parent=MS.gene011609.t1 |
| Gene Sequence |
| Protein sequence |
