AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene033985


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene033985.t1 MTR_4g011930 93.750 448 17 2 1 448 1 437 0.0 760
MS.gene033985.t1 MTR_7g060890 51.748 143 25 1 1 143 1 99 2.03e-32 119
MS.gene033985.t1 MTR_3g032750 50.350 143 33 2 1 143 1 105 1.96e-31 122
MS.gene033985.t1 MTR_1g112060 76.136 88 19 1 1 86 115 202 3.60e-28 112
MS.gene033985.t1 MTR_4g014050 62.000 50 19 0 3 52 717 766 7.50e-12 68.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene033985.t1 AT1G52380 46.300 473 194 15 1 447 1 439 3.64e-104 317
MS.gene033985.t1 AT1G52380 46.300 473 194 15 1 447 1 439 3.64e-104 317
MS.gene033985.t1 AT1G52380 46.300 473 194 15 1 447 1 439 3.64e-104 317
MS.gene033985.t1 AT1G52380 46.300 473 194 15 1 447 1 439 3.64e-104 317
MS.gene033985.t1 AT3G15970 42.355 484 222 15 1 447 1 464 6.96e-93 288
MS.gene033985.t1 AT3G15970 42.355 484 222 15 1 447 1 464 6.96e-93 288

Find 119 sgRNAs with CRISPR-Local

Find 127 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTATCTAACTCTGGAAGTTC+TGG 0.270249 4.3:+84857418 MS.gene033985:CDS
TTCACAGGTCTTGTTGGGTC+TGG 0.292666 4.3:+84857283 MS.gene033985:CDS
TGAAATGAAGCTCACAAATA+TGG 0.293632 4.3:+84857696 MS.gene033985:CDS
ATATTTGTGAGCTTCATTTC+AGG 0.313432 4.3:-84857694 None:intergenic
CAGAGTTCTTATGAGGTCTA+AGG 0.315667 4.3:+84857636 MS.gene033985:CDS
AACTCTGGAAGTTCTGGTTT+TGG 0.315736 4.3:+84857424 MS.gene033985:CDS
TTGAAACCTGACCAGCCTTT+AGG 0.324636 4.3:+84857388 MS.gene033985:CDS
TAAGAAGGAAGTTGCTGATA+AGG 0.332879 4.3:+84857027 MS.gene033985:CDS
TGTTACTTTGACCATTCTTC+TGG 0.332895 4.3:-84856702 None:intergenic
CCTGACCAGCCTTTAGGTCT+TGG 0.361060 4.3:+84857394 MS.gene033985:CDS
TCATCTTCCTCGTCGTCAAT+AGG 0.362423 4.3:-84856626 None:intergenic
TGTAGACCCGAAGGAAAATA+AGG 0.369166 4.3:-84857317 None:intergenic
TCTTCATCCTTAGCTTTCTC+TGG 0.371345 4.3:-84856830 None:intergenic
AACAAATGATGGGTCTACTT+TGG 0.384601 4.3:+84857339 MS.gene033985:CDS
CGTATACCAGCGAAAGGGTT+TGG 0.386213 4.3:-84856749 None:intergenic
GAAGCCTTGGGAGAGTTCTC+TGG 0.387453 4.3:-84857868 None:intergenic
ACATCAGGAGCTTTGCTCTC+TGG 0.390832 4.3:-84856863 None:intergenic
TCTACTTTGGGTAGTGGGTC+CGG 0.396921 4.3:+84857352 MS.gene033985:CDS
TCTTGAAAGTCCCGGCTTCA+AGG 0.403876 4.3:-84856655 None:intergenic
TTCCTGCAGTGTTTCAGTCT+TGG 0.406473 4.3:-84857470 None:intergenic
GAGCGACAGTGACAACTCTA+AGG 0.408430 4.3:+84856958 MS.gene033985:CDS
ATGCCTTCACAGGTCTTGTT+GGG 0.412610 4.3:+84857278 MS.gene033985:CDS
AGCTCAAACATCAGAAGCCT+TGG 0.417787 4.3:-84857881 None:intergenic
CCTTACAGTCGTCAAAGAAA+AGG 0.420646 4.3:+84856573 MS.gene033985:CDS
CCAAGACCTAAAGGCTGGTC+AGG 0.423398 4.3:-84857394 None:intergenic
ACAAATGATGGGTCTACTTT+GGG 0.423993 4.3:+84857340 MS.gene033985:CDS
GGTTGGAAGGAACGTGGAAA+GGG 0.429315 4.3:+84857571 MS.gene033985:CDS
TTTGCATTGAAGTTCAAAGA+TGG 0.435158 4.3:+84857775 MS.gene033985:CDS
ACTGAATCCACTGCCAAGTC+TGG 0.437172 4.3:+84856785 MS.gene033985:CDS
AATGCCTTCACAGGTCTTGT+TGG 0.440022 4.3:+84857277 MS.gene033985:CDS
TATTTGTGAGCTTCATTTCA+GGG 0.440319 4.3:-84857693 None:intergenic
TTCGGGTCTACAACAAATGA+TGG 0.442733 4.3:+84857328 MS.gene033985:CDS
AGGCAAGGAGCTTGCGGAGA+AGG 0.452508 4.3:+84856934 MS.gene033985:CDS
GGTAGATAATGAACAGAGTA+AGG 0.452713 4.3:+84856979 MS.gene033985:CDS
TCGTCAAAGAAAAGGGCTGC+TGG 0.453932 4.3:+84856581 MS.gene033985:CDS
AGTAAGTGAAAGCAAGGATA+AGG 0.460546 4.3:+84857150 MS.gene033985:CDS
AGTAAGCGAAAGCAAGGATA+AGG 0.460546 4.3:+84857180 MS.gene033985:CDS
GATTGAAAATGAGGATAAGA+AGG 0.464936 4.3:+84857012 MS.gene033985:CDS
GCTCACAAATATGGAGAAGA+AGG 0.474042 4.3:+84857705 MS.gene033985:CDS
ATGACGCTGCCCTTGAAGCC+GGG 0.474337 4.3:+84856645 MS.gene033985:CDS
GATGACGCTGCCCTTGAAGC+CGG 0.476093 4.3:+84856644 MS.gene033985:CDS
ATGGGTCTACTTTGGGTAGT+GGG 0.480263 4.3:+84857347 MS.gene033985:CDS
ACTGGCTTTCTTGAAAGTCC+CGG 0.480603 4.3:-84856663 None:intergenic
GGTTGCAAGAACCTCCTCAC+TGG 0.485123 4.3:-84856681 None:intergenic
AAATAGTGAAAGCAAGGATA+AGG 0.486758 4.3:+84857120 MS.gene033985:CDS
CCCTTCAGTGGCACATGCAA+AGG 0.487875 4.3:-84857734 None:intergenic
AGTAGTAGCTTCACCAGACT+TGG 0.494029 4.3:-84856798 None:intergenic
GGTCTTGGTTTATCTAACTC+TGG 0.494050 4.3:+84857409 MS.gene033985:CDS
AGGTTGGAAGGAACGTGGAA+AGG 0.496279 4.3:+84857570 MS.gene033985:CDS
TTAGATAAACCAAGACCTAA+AGG 0.499520 4.3:-84857403 None:intergenic
GTAGATTTGTCCTCAACATC+AGG 0.499844 4.3:-84856878 None:intergenic
CAGGAAGTCGTCATAGAAAC+CGG 0.499987 4.3:+84857487 MS.gene033985:CDS
CGTCGTCAATAGGAGTGTCT+CGG 0.502212 4.3:-84856616 None:intergenic
GCTGTTGAAATGATTTGAAA+GGG 0.504844 4.3:-84857240 None:intergenic
CTTACAGTCGTCAAAGAAAA+GGG 0.505584 4.3:+84856574 MS.gene033985:CDS
GATGGGTCTACTTTGGGTAG+TGG 0.506943 4.3:+84857346 MS.gene033985:CDS
TTGCATTGAAGTTCAAAGAT+GGG 0.509535 4.3:+84857776 MS.gene033985:CDS
AGTCTTGAAATCCTCCACTA+TGG 0.509950 4.3:-84857800 None:intergenic
TTGGAGTAGATTTATTCTGT+TGG 0.517375 4.3:-84856730 None:intergenic
TTGAGTTTGCAGATGGAGGT+TGG 0.519670 4.3:+84857554 MS.gene033985:CDS
TTGTTTGAGTTTGCAGATGG+AGG 0.522768 4.3:+84857550 MS.gene033985:CDS
TGGACGTAAGATTGAAAATG+AGG 0.525984 4.3:+84857003 MS.gene033985:CDS
GTCGTCAATAGGAGTGTCTC+GGG 0.531300 4.3:-84856615 None:intergenic
GTGTTGTTTGAGTTTGCAGA+TGG 0.533735 4.3:+84857547 MS.gene033985:CDS
CGGTGAAGAAAACGAGGAAG+TGG 0.537379 4.3:+84857507 MS.gene033985:CDS
CTTGAAAGTCCCGGCTTCAA+GGG 0.539539 4.3:-84856654 None:intergenic
AGCTGTTGAAATGATTTGAA+AGG 0.539560 4.3:-84857241 None:intergenic
GTTTGCAGATGGAGGTTGGA+AGG 0.542312 4.3:+84857558 MS.gene033985:CDS
GCTCAAACATCAGAAGCCTT+GGG 0.542932 4.3:-84857880 None:intergenic
GGTTCTTGCAACCAGAAGAA+TGG 0.542934 4.3:+84856691 MS.gene033985:CDS
AGACAAAGTAAGTGAAAGCA+AGG 0.543217 4.3:+84857144 MS.gene033985:CDS
GATAATGAACAGAGTAAGGA+TGG 0.544320 4.3:+84856983 MS.gene033985:CDS
AACTAGTGGAACAGAAAAGA+AGG 0.545059 4.3:+84857612 MS.gene033985:CDS
AAAGGGCCACCTTCAGCAGT+AGG 0.547591 4.3:-84857223 None:intergenic
AGCAATCAAAATGCCTTCAC+AGG 0.548375 4.3:+84857268 MS.gene033985:CDS
AGACAAAGTAAGCGAAAGCA+AGG 0.554995 4.3:+84857174 MS.gene033985:CDS
ATAAACCAAGACCTAAAGGC+TGG 0.555593 4.3:-84857399 None:intergenic
AGCTTCACCAGACTTGGCAG+TGG 0.560811 4.3:-84856792 None:intergenic
TTCCAAGACTGAAACACTGC+AGG 0.563759 4.3:+84857468 MS.gene033985:CDS
CTTAGACCTCATAAGAACTC+TGG 0.564260 4.3:-84857635 None:intergenic
GCAGTGGATTCAGTAGGAGC+AGG 0.564389 4.3:-84856776 None:intergenic
CGTCAAAGAAAAGGGCTGCT+GGG 0.566029 4.3:+84856582 MS.gene033985:CDS
CAATGCAGGCAAGGAGCTTG+CGG 0.566828 4.3:+84856928 MS.gene033985:CDS
AAGACGGTCTTTCCCTTCAG+TGG 0.567228 4.3:-84857746 None:intergenic
TCTACTCCAAACCCTTTCGC+TGG 0.571206 4.3:+84856743 MS.gene033985:CDS
GGCAAGCGTATACCAGCGAA+AGG 0.572904 4.3:-84856755 None:intergenic
GACTGCTATCACAGCACACA+AGG 0.572911 4.3:+84857819 MS.gene033985:CDS
GAGCAAAGCTCCTGATGTTG+AGG 0.573315 4.3:+84856868 MS.gene033985:CDS
AGAGTTCTTATGAGGTCTAA+GGG 0.575744 4.3:+84857637 MS.gene033985:CDS
CCTTTGCATGTGCCACTGAA+GGG 0.575965 4.3:+84857734 MS.gene033985:CDS
GAACGGAAATAGTGAAAGCA+AGG 0.577253 4.3:+84857114 MS.gene033985:CDS
AGAAGGCCAGAGTTCTTATG+AGG 0.577595 4.3:+84857629 MS.gene033985:CDS
ACCTTTGCATGTGCCACTGA+AGG 0.579423 4.3:+84857733 MS.gene033985:CDS
GTTCAAAGATGGGTCCATAG+TGG 0.583030 4.3:+84857786 MS.gene033985:CDS
AGACCCAACAAGACCTGTGA+AGG 0.595406 4.3:-84857281 None:intergenic
GTGAAAGTGAATGTAACTAG+TGG 0.595453 4.3:+84857598 MS.gene033985:CDS
TACTTCAAACAACGATGTTG+CGG 0.596477 4.3:+84856898 MS.gene033985:CDS
AGTGACGAGCCTACTGCTGA+AGG 0.599077 4.3:+84857214 MS.gene033985:CDS
GGACAGAAACAATGCAGGCA+AGG 0.604459 4.3:+84856919 MS.gene033985:CDS
ATCATTTGTTGTAGACCCGA+AGG 0.607405 4.3:-84857326 None:intergenic
GTTGCTGATAAGGAGAGTGC+CGG 0.608076 4.3:+84857037 MS.gene033985:CDS
TCAATGCAAATGTTGAAAGA+CGG 0.609075 4.3:-84857762 None:intergenic
TCGGGTCTACAACAAATGAT+GGG 0.616965 4.3:+84857329 MS.gene033985:CDS
GACGAGCCTACTGCTGAAGG+TGG 0.621305 4.3:+84857217 MS.gene033985:CDS
GTTGCGGACAGAAACAATGC+AGG 0.625399 4.3:+84856914 MS.gene033985:CDS
CTCACAAATATGGAGAAGAA+GGG 0.630174 4.3:+84857706 MS.gene033985:CDS
GACTCCAGAGAACTCTCCCA+AGG 0.630564 4.3:+84857864 MS.gene033985:CDS
AACGCAGCCAGAGAAAGCTA+AGG 0.632276 4.3:+84856823 MS.gene033985:CDS
TATCACAGCACACAAGGGTG+AGG 0.638173 4.3:+84857825 MS.gene033985:CDS
CAAAGATGGGTCCATAGTGG+AGG 0.639977 4.3:+84857789 MS.gene033985:CDS
GCAAGCGTATACCAGCGAAA+GGG 0.643938 4.3:-84856754 None:intergenic
TTTCAAGAAAGCCAGTGAGG+AGG 0.650952 4.3:+84856670 MS.gene033985:CDS
ACTGAGAACAGTGATAAGAA+CGG 0.660347 4.3:+84857097 MS.gene033985:CDS
GACTTTCAAGAAAGCCAGTG+AGG 0.667433 4.3:+84856667 MS.gene033985:CDS
GATGGAGGTTGGAAGGAACG+TGG 0.668623 4.3:+84857565 MS.gene033985:CDS
GACTTGGCAGTGGATTCAGT+AGG 0.688140 4.3:-84856782 None:intergenic
AGAAACCGGTGAAGAAAACG+AGG 0.713487 4.3:+84857501 MS.gene033985:CDS
ACTGCTATCACAGCACACAA+GGG 0.723065 4.3:+84857820 MS.gene033985:CDS
AGACACTCCTATTGACGACG+AGG 0.724010 4.3:+84856619 MS.gene033985:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
! TTTCAATCCAAAAATAGAAC+CGG - chr4.3:84857374-84857393 None:intergenic 25.0%
!!! TCAGTATTTTTTTCTTCTGT+AGG - chr4.3:84857082-84857101 None:intergenic 25.0%
AAATAGTGAAAGCAAGGATA+AGG + chr4.3:84857120-84857139 MS.gene033985:CDS 30.0%
AGCTGTTGAAATGATTTGAA+AGG - chr4.3:84857244-84857263 None:intergenic 30.0%
ATATTTGTGAGCTTCATTTC+AGG - chr4.3:84857697-84857716 None:intergenic 30.0%
GATTGAAAATGAGGATAAGA+AGG + chr4.3:84857012-84857031 MS.gene033985:CDS 30.0%
GCTGTTGAAATGATTTGAAA+GGG - chr4.3:84857243-84857262 None:intergenic 30.0%
TATTTGTGAGCTTCATTTCA+GGG - chr4.3:84857696-84857715 None:intergenic 30.0%
TCAATGCAAATGTTGAAAGA+CGG - chr4.3:84857765-84857784 None:intergenic 30.0%
TGAAATGAAGCTCACAAATA+TGG + chr4.3:84857696-84857715 MS.gene033985:CDS 30.0%
TTAGATAAACCAAGACCTAA+AGG - chr4.3:84857406-84857425 None:intergenic 30.0%
TTGCATTGAAGTTCAAAGAT+GGG + chr4.3:84857776-84857795 MS.gene033985:CDS 30.0%
TTGGAGTAGATTTATTCTGT+TGG - chr4.3:84856733-84856752 None:intergenic 30.0%
TTTGCATTGAAGTTCAAAGA+TGG + chr4.3:84857775-84857794 MS.gene033985:CDS 30.0%
!!! GTATTTTTTTCTTCTGTAGG+AGG - chr4.3:84857079-84857098 None:intergenic 30.0%
!!! TCTTCTTCCTTATTTTCCTT+CGG + chr4.3:84857310-84857329 MS.gene033985:CDS 30.0%
AACTAGTGGAACAGAAAAGA+AGG + chr4.3:84857612-84857631 MS.gene033985:CDS 35.0%
ACTGAGAACAGTGATAAGAA+CGG + chr4.3:84857097-84857116 MS.gene033985:CDS 35.0%
AGACAAAGTAAGTGAAAGCA+AGG + chr4.3:84857144-84857163 MS.gene033985:CDS 35.0%
AGAGTTCTTATGAGGTCTAA+GGG + chr4.3:84857637-84857656 MS.gene033985:CDS 35.0%
AGTAAGTGAAAGCAAGGATA+AGG + chr4.3:84857150-84857169 MS.gene033985:CDS 35.0%
CTCACAAATATGGAGAAGAA+GGG + chr4.3:84857706-84857725 MS.gene033985:CDS 35.0%
CTTACAGTCGTCAAAGAAAA+GGG + chr4.3:84856574-84856593 MS.gene033985:CDS 35.0%
GATAATGAACAGAGTAAGGA+TGG + chr4.3:84856983-84857002 MS.gene033985:CDS 35.0%
GGTAGATAATGAACAGAGTA+AGG + chr4.3:84856979-84856998 MS.gene033985:CDS 35.0%
GTGAAAGTGAATGTAACTAG+TGG + chr4.3:84857598-84857617 MS.gene033985:CDS 35.0%
TAAGAAGGAAGTTGCTGATA+AGG + chr4.3:84857027-84857046 MS.gene033985:CDS 35.0%
TACTTCAAACAACGATGTTG+CGG + chr4.3:84856898-84856917 MS.gene033985:CDS 35.0%
TGGACGTAAGATTGAAAATG+AGG + chr4.3:84857003-84857022 MS.gene033985:CDS 35.0%
! TTATCTAACTCTGGAAGTTC+TGG + chr4.3:84857418-84857437 MS.gene033985:CDS 35.0%
!! AACAAATGATGGGTCTACTT+TGG + chr4.3:84857339-84857358 MS.gene033985:CDS 35.0%
!! ACAAATGATGGGTCTACTTT+GGG + chr4.3:84857340-84857359 MS.gene033985:CDS 35.0%
!! TGTTACTTTGACCATTCTTC+TGG - chr4.3:84856705-84856724 None:intergenic 35.0%
!!! CTTCTTCCTTATTTTCCTTC+GGG + chr4.3:84857311-84857330 MS.gene033985:CDS 35.0%
AGACAAAGTAAGCGAAAGCA+AGG + chr4.3:84857174-84857193 MS.gene033985:CDS 40.0%
AGCAATCAAAATGCCTTCAC+AGG + chr4.3:84857268-84857287 MS.gene033985:CDS 40.0%
AGTAAGCGAAAGCAAGGATA+AGG + chr4.3:84857180-84857199 MS.gene033985:CDS 40.0%
AGTCTTGAAATCCTCCACTA+TGG - chr4.3:84857803-84857822 None:intergenic 40.0%
ATAAACCAAGACCTAAAGGC+TGG - chr4.3:84857402-84857421 None:intergenic 40.0%
CAGAGTTCTTATGAGGTCTA+AGG + chr4.3:84857636-84857655 MS.gene033985:CDS 40.0%
CCTTACAGTCGTCAAAGAAA+AGG + chr4.3:84856573-84856592 MS.gene033985:CDS 40.0%
CTTAGACCTCATAAGAACTC+TGG - chr4.3:84857638-84857657 None:intergenic 40.0%
GAACGGAAATAGTGAAAGCA+AGG + chr4.3:84857114-84857133 MS.gene033985:CDS 40.0%
GCTCACAAATATGGAGAAGA+AGG + chr4.3:84857705-84857724 MS.gene033985:CDS 40.0%
GGTCTTGGTTTATCTAACTC+TGG + chr4.3:84857409-84857428 MS.gene033985:CDS 40.0%
GTAGATTTGTCCTCAACATC+AGG - chr4.3:84856881-84856900 None:intergenic 40.0%
TCGGGTCTACAACAAATGAT+GGG + chr4.3:84857329-84857348 MS.gene033985:CDS 40.0%
TGTAGACCCGAAGGAAAATA+AGG - chr4.3:84857320-84857339 None:intergenic 40.0%
TTCGGGTCTACAACAAATGA+TGG + chr4.3:84857328-84857347 MS.gene033985:CDS 40.0%
! CCTTTTCTTTGACGACTGTA+AGG - chr4.3:84856576-84856595 None:intergenic 40.0%
! TCTTCATCCTTAGCTTTCTC+TGG - chr4.3:84856833-84856852 None:intergenic 40.0%
! TTGTTTGAGTTTGCAGATGG+AGG + chr4.3:84857550-84857569 MS.gene033985:CDS 40.0%
!! ATCATTTGTTGTAGACCCGA+AGG - chr4.3:84857329-84857348 None:intergenic 40.0%
!! GTGTTGTTTGAGTTTGCAGA+TGG + chr4.3:84857547-84857566 MS.gene033985:CDS 40.0%
!!! AACTCTGGAAGTTCTGGTTT+TGG + chr4.3:84857424-84857443 MS.gene033985:CDS 40.0%
!!! AGGTTCTTTTTCGATCTCAC+CGG - chr4.3:84857059-84857078 None:intergenic 40.0%
!!! AGTTCTGGTTTTGGAACATC+AGG + chr4.3:84857433-84857452 MS.gene033985:CDS 40.0%
ACTGCTATCACAGCACACAA+GGG + chr4.3:84857820-84857839 MS.gene033985:CDS 45.0%
AGAAACCGGTGAAGAAAACG+AGG + chr4.3:84857501-84857520 MS.gene033985:CDS 45.0%
AGAAGGCCAGAGTTCTTATG+AGG + chr4.3:84857629-84857648 MS.gene033985:CDS 45.0%
AGTAGTAGCTTCACCAGACT+TGG - chr4.3:84856801-84856820 None:intergenic 45.0%
ATGGGTCTACTTTGGGTAGT+GGG + chr4.3:84857347-84857366 MS.gene033985:CDS 45.0%
CAGGAAGTCGTCATAGAAAC+CGG + chr4.3:84857487-84857506 MS.gene033985:CDS 45.0%
GACTTTCAAGAAAGCCAGTG+AGG + chr4.3:84856667-84856686 MS.gene033985:CDS 45.0%
GGTTCTTGCAACCAGAAGAA+TGG + chr4.3:84856691-84856710 MS.gene033985:CDS 45.0%
GTTCAAAGATGGGTCCATAG+TGG + chr4.3:84857786-84857805 MS.gene033985:CDS 45.0%
TCATCTTCCTCGTCGTCAAT+AGG - chr4.3:84856629-84856648 None:intergenic 45.0%
TTCCAAGACTGAAACACTGC+AGG + chr4.3:84857468-84857487 MS.gene033985:CDS 45.0%
TTCCTGCAGTGTTTCAGTCT+TGG - chr4.3:84857473-84857492 None:intergenic 45.0%
TTGAAACCTGACCAGCCTTT+AGG + chr4.3:84857388-84857407 MS.gene033985:CDS 45.0%
TTGAGTTTGCAGATGGAGGT+TGG + chr4.3:84857554-84857573 MS.gene033985:CDS 45.0%
TTTCAAGAAAGCCAGTGAGG+AGG + chr4.3:84856670-84856689 MS.gene033985:CDS 45.0%
! AATGCCTTCACAGGTCTTGT+TGG + chr4.3:84857277-84857296 MS.gene033985:CDS 45.0%
! AGTGGGTCCGGTTCTATTTT+TGG + chr4.3:84857364-84857383 MS.gene033985:CDS 45.0%
! CACTTCCTCGTTTTCTTCAC+CGG - chr4.3:84857509-84857528 None:intergenic 45.0%
!! ACTGGCTTTCTTGAAAGTCC+CGG - chr4.3:84856666-84856685 None:intergenic 45.0%
!! ATGCCTTCACAGGTCTTGTT+GGG + chr4.3:84857278-84857297 MS.gene033985:CDS 45.0%
AACGCAGCCAGAGAAAGCTA+AGG + chr4.3:84856823-84856842 MS.gene033985:CDS 50.0%
AAGACGGTCTTTCCCTTCAG+TGG - chr4.3:84857749-84857768 None:intergenic 50.0%
ACATCAGGAGCTTTGCTCTC+TGG - chr4.3:84856866-84856885 None:intergenic 50.0%
ACTGAATCCACTGCCAAGTC+TGG + chr4.3:84856785-84856804 MS.gene033985:CDS 50.0%
AGACACTCCTATTGACGACG+AGG + chr4.3:84856619-84856638 MS.gene033985:CDS 50.0%
AGACCCAACAAGACCTGTGA+AGG - chr4.3:84857284-84857303 None:intergenic 50.0%
AGGTTGGAAGGAACGTGGAA+AGG + chr4.3:84857570-84857589 MS.gene033985:CDS 50.0%
CAAAGATGGGTCCATAGTGG+AGG + chr4.3:84857789-84857808 MS.gene033985:CDS 50.0%
CGGTGAAGAAAACGAGGAAG+TGG + chr4.3:84857507-84857526 MS.gene033985:CDS 50.0%
CGTATACCAGCGAAAGGGTT+TGG - chr4.3:84856752-84856771 None:intergenic 50.0%
CGTCAAAGAAAAGGGCTGCT+GGG + chr4.3:84856582-84856601 MS.gene033985:CDS 50.0%
CTTGAAAGTCCCGGCTTCAA+GGG - chr4.3:84856657-84856676 None:intergenic 50.0%
GACTGCTATCACAGCACACA+AGG + chr4.3:84857819-84857838 MS.gene033985:CDS 50.0%
GAGCAAAGCTCCTGATGTTG+AGG + chr4.3:84856868-84856887 MS.gene033985:CDS 50.0%
GAGCGACAGTGACAACTCTA+AGG + chr4.3:84856958-84856977 MS.gene033985:CDS 50.0%
GATGGGTCTACTTTGGGTAG+TGG + chr4.3:84857346-84857365 MS.gene033985:CDS 50.0%
GCAAGCGTATACCAGCGAAA+GGG - chr4.3:84856757-84856776 None:intergenic 50.0%
GGACAGAAACAATGCAGGCA+AGG + chr4.3:84856919-84856938 MS.gene033985:CDS 50.0%
GGTTGGAAGGAACGTGGAAA+GGG + chr4.3:84857571-84857590 MS.gene033985:CDS 50.0%
GTTGCGGACAGAAACAATGC+AGG + chr4.3:84856914-84856933 MS.gene033985:CDS 50.0%
GTTTGCAGATGGAGGTTGGA+AGG + chr4.3:84857558-84857577 MS.gene033985:CDS 50.0%
TATCACAGCACACAAGGGTG+AGG + chr4.3:84857825-84857844 MS.gene033985:CDS 50.0%
TCGTCAAAGAAAAGGGCTGC+TGG + chr4.3:84856581-84856600 MS.gene033985:CDS 50.0%
TCTACTCCAAACCCTTTCGC+TGG + chr4.3:84856743-84856762 MS.gene033985:CDS 50.0%
TCTTGAAAGTCCCGGCTTCA+AGG - chr4.3:84856658-84856677 None:intergenic 50.0%
! ACCTTTGCATGTGCCACTGA+AGG + chr4.3:84857733-84857752 MS.gene033985:CDS 50.0%
! CCTTTGCATGTGCCACTGAA+GGG + chr4.3:84857734-84857753 MS.gene033985:CDS 50.0%
! GACTTGGCAGTGGATTCAGT+AGG - chr4.3:84856785-84856804 None:intergenic 50.0%
! GTTGCTGATAAGGAGAGTGC+CGG + chr4.3:84857037-84857056 MS.gene033985:CDS 50.0%
!! CGTCGTCAATAGGAGTGTCT+CGG - chr4.3:84856619-84856638 None:intergenic 50.0%
!! GTCGTCAATAGGAGTGTCTC+GGG - chr4.3:84856618-84856637 None:intergenic 50.0%
!! TCTACTTTGGGTAGTGGGTC+CGG + chr4.3:84857352-84857371 MS.gene033985:CDS 50.0%
!! TTCACAGGTCTTGTTGGGTC+TGG + chr4.3:84857283-84857302 MS.gene033985:CDS 50.0%
AAAGGGCCACCTTCAGCAGT+AGG - chr4.3:84857226-84857245 None:intergenic 55.0%
AGCTTCACCAGACTTGGCAG+TGG - chr4.3:84856795-84856814 None:intergenic 55.0%
AGTGACGAGCCTACTGCTGA+AGG + chr4.3:84857214-84857233 MS.gene033985:CDS 55.0%
CAATGCAGGCAAGGAGCTTG+CGG + chr4.3:84856928-84856947 MS.gene033985:CDS 55.0%
CCCTTCAGTGGCACATGCAA+AGG - chr4.3:84857737-84857756 None:intergenic 55.0%
CCTGACCAGCCTTTAGGTCT+TGG + chr4.3:84857394-84857413 MS.gene033985:CDS 55.0%
GAAGCCTTGGGAGAGTTCTC+TGG - chr4.3:84857871-84857890 None:intergenic 55.0%
GACTCCAGAGAACTCTCCCA+AGG + chr4.3:84857864-84857883 MS.gene033985:CDS 55.0%
GATGGAGGTTGGAAGGAACG+TGG + chr4.3:84857565-84857584 MS.gene033985:CDS 55.0%
GGCAAGCGTATACCAGCGAA+AGG - chr4.3:84856758-84856777 None:intergenic 55.0%
GGTTGCAAGAACCTCCTCAC+TGG - chr4.3:84856684-84856703 None:intergenic 55.0%
! CCAAGACCTAAAGGCTGGTC+AGG - chr4.3:84857397-84857416 None:intergenic 55.0%
! GCAGTGGATTCAGTAGGAGC+AGG - chr4.3:84856779-84856798 None:intergenic 55.0%
AGGCAAGGAGCTTGCGGAGA+AGG + chr4.3:84856934-84856953 MS.gene033985:CDS 60.0%
ATGACGCTGCCCTTGAAGCC+GGG + chr4.3:84856645-84856664 MS.gene033985:CDS 60.0%
GACGAGCCTACTGCTGAAGG+TGG + chr4.3:84857217-84857236 MS.gene033985:CDS 60.0%
GATGACGCTGCCCTTGAAGC+CGG + chr4.3:84856644-84856663 MS.gene033985:CDS 60.0%


Chromosome Type Strat End Strand Name
chr4.3 gene 84856554 84857900 84856554 ID=MS.gene033985
chr4.3 mRNA 84856554 84857900 84856554 ID=MS.gene033985.t1;Parent=MS.gene033985
chr4.3 exon 84856554 84857900 84856554 ID=MS.gene033985.t1.exon1;Parent=MS.gene033985.t1
chr4.3 CDS 84856554 84857900 84856554 ID=cds.MS.gene033985.t1;Parent=MS.gene033985.t1
Gene Sequence

>MS.gene033985

ATGGGGGATGCTGAGAATGCCTTACAGTCGTCAAAGAAAAGGGCTGCTGGGCGTGAGCTCACCCGAGACACTCCTATTGACGACGAGGAAGATGACGCTGCCCTTGAAGCCGGGACTTTCAAGAAAGCCAGTGAGGAGGTTCTTGCAACCAGAAGAATGGTCAAAGTAACACGTCGCCAACAGAATAAATCTACTCCAAACCCTTTCGCTGGTATACGCTTGCCTGCTCCTACTGAATCCACTGCCAAGTCTGGTGAAGCTACTACTGAAACGCAGCCAGAGAAAGCTAAGGATGAAGAAACTAAGCAGCCAGAGAGCAAAGCTCCTGATGTTGAGGACAAATCTACTTCAAACAACGATGTTGCGGACAGAAACAATGCAGGCAAGGAGCTTGCGGAGAAGGAGAGCGACAGTGACAACTCTAAGGTAGATAATGAACAGAGTAAGGATGGACGTAAGATTGAAAATGAGGATAAGAAGGAAGTTGCTGATAAGGAGAGTGCCGGTGAGATCGAAAAAGAACCTCCTACAGAAGAAAAAAATACTGAGAACAGTGATAAGAACGGAAATAGTGAAAGCAAGGATAAGGAAGACAAAGTAAGTGAAAGCAAGGATAAGGAAGACAAAGTAAGCGAAAGCAAGGATAAGGAAGACAAAGTAAGTGACGAGCCTACTGCTGAAGGTGGCCCTTTCAAATCATTTCAACAGCTTTCGAGCAATCAAAATGCCTTCACAGGTCTTGTTGGGTCTGGATTTTCTTCTTCCTTATTTTCCTTCGGGTCTACAACAAATGATGGGTCTACTTTGGGTAGTGGGTCCGGTTCTATTTTTGGATTGAAACCTGACCAGCCTTTAGGTCTTGGTTTATCTAACTCTGGAAGTTCTGGTTTTGGAACATCAGGAGCATCTGCTGTTTCCAAGACTGAAACACTGCAGGAAGTCGTCATAGAAACCGGTGAAGAAAACGAGGAAGTGGTTTTTAATGCAGATTCAGTGTTGTTTGAGTTTGCAGATGGAGGTTGGAAGGAACGTGGAAAGGGAGAAGTGAAAGTGAATGTAACTAGTGGAACAGAAAAGAAGGCCAGAGTTCTTATGAGGTCTAAGGGAAATTACAGATTGATTTTAAATGCACGTCTTTACCCTGAAATGAAGCTCACAAATATGGAGAAGAAGGGTGTTACCTTTGCATGTGCCACTGAAGGGAAAGACCGTCTTTCAACATTTGCATTGAAGTTCAAAGATGGGTCCATAGTGGAGGATTTCAAGACTGCTATCACAGCACACAAGGGTGAGGCATCTACAATTGTGAAGACTCCAGAGAACTCTCCCAAGGCTTCTGATGTTTGA

Protein sequence

>MS.gene033985.t1

MGDAENALQSSKKRAAGRELTRDTPIDDEEDDAALEAGTFKKASEEVLATRRMVKVTRRQQNKSTPNPFAGIRLPAPTESTAKSGEATTETQPEKAKDEETKQPESKAPDVEDKSTSNNDVADRNNAGKELAEKESDSDNSKVDNEQSKDGRKIENEDKKEVADKESAGEIEKEPPTEEKNTENSDKNGNSESKDKEDKVSESKDKEDKVSESKDKEDKVSDEPTAEGGPFKSFQQLSSNQNAFTGLVGSGFSSSLFSFGSTTNDGSTLGSGSGSIFGLKPDQPLGLGLSNSGSSGFGTSGASAVSKTETLQEVVIETGEENEEVVFNADSVLFEFADGGWKERGKGEVKVNVTSGTEKKARVLMRSKGNYRLILNARLYPEMKLTNMEKKGVTFACATEGKDRLSTFALKFKDGSIVEDFKTAITAHKGEASTIVKTPENSPKASDV