Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene033985.t1 | XP_013454739.1 | 93.3 | 448 | 19 | 2 | 1 | 448 | 1 | 437 | 2.20E-152 | 548.9 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene033985.t1 | Q9LW88 | 37.6 | 490 | 237 | 11 | 1 | 447 | 1 | 464 | 1.1e-56 | 222.2 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene033985.t1 | A0A072USC3 | 93.3 | 448 | 19 | 2 | 1 | 448 | 1 | 437 | 1.6e-152 | 548.9 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene033985 | MS.gene036223 | PPI |
| MS.gene32049 | MS.gene033985 | PPI |
| MS.gene39989 | MS.gene033985 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene033985.t1 | MTR_4g011930 | 93.750 | 448 | 17 | 2 | 1 | 448 | 1 | 437 | 0.0 | 760 |
| MS.gene033985.t1 | MTR_7g060890 | 51.748 | 143 | 25 | 1 | 1 | 143 | 1 | 99 | 2.03e-32 | 119 |
| MS.gene033985.t1 | MTR_3g032750 | 50.350 | 143 | 33 | 2 | 1 | 143 | 1 | 105 | 1.96e-31 | 122 |
| MS.gene033985.t1 | MTR_1g112060 | 76.136 | 88 | 19 | 1 | 1 | 86 | 115 | 202 | 3.60e-28 | 112 |
| MS.gene033985.t1 | MTR_4g014050 | 62.000 | 50 | 19 | 0 | 3 | 52 | 717 | 766 | 7.50e-12 | 68.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene033985.t1 | AT1G52380 | 46.300 | 473 | 194 | 15 | 1 | 447 | 1 | 439 | 3.64e-104 | 317 |
| MS.gene033985.t1 | AT1G52380 | 46.300 | 473 | 194 | 15 | 1 | 447 | 1 | 439 | 3.64e-104 | 317 |
| MS.gene033985.t1 | AT1G52380 | 46.300 | 473 | 194 | 15 | 1 | 447 | 1 | 439 | 3.64e-104 | 317 |
| MS.gene033985.t1 | AT1G52380 | 46.300 | 473 | 194 | 15 | 1 | 447 | 1 | 439 | 3.64e-104 | 317 |
| MS.gene033985.t1 | AT3G15970 | 42.355 | 484 | 222 | 15 | 1 | 447 | 1 | 464 | 6.96e-93 | 288 |
| MS.gene033985.t1 | AT3G15970 | 42.355 | 484 | 222 | 15 | 1 | 447 | 1 | 464 | 6.96e-93 | 288 |
Find 119 sgRNAs with CRISPR-Local
Find 127 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTATCTAACTCTGGAAGTTC+TGG | 0.270249 | 4.3:+84857418 | MS.gene033985:CDS |
| TTCACAGGTCTTGTTGGGTC+TGG | 0.292666 | 4.3:+84857283 | MS.gene033985:CDS |
| TGAAATGAAGCTCACAAATA+TGG | 0.293632 | 4.3:+84857696 | MS.gene033985:CDS |
| ATATTTGTGAGCTTCATTTC+AGG | 0.313432 | 4.3:-84857694 | None:intergenic |
| CAGAGTTCTTATGAGGTCTA+AGG | 0.315667 | 4.3:+84857636 | MS.gene033985:CDS |
| AACTCTGGAAGTTCTGGTTT+TGG | 0.315736 | 4.3:+84857424 | MS.gene033985:CDS |
| TTGAAACCTGACCAGCCTTT+AGG | 0.324636 | 4.3:+84857388 | MS.gene033985:CDS |
| TAAGAAGGAAGTTGCTGATA+AGG | 0.332879 | 4.3:+84857027 | MS.gene033985:CDS |
| TGTTACTTTGACCATTCTTC+TGG | 0.332895 | 4.3:-84856702 | None:intergenic |
| CCTGACCAGCCTTTAGGTCT+TGG | 0.361060 | 4.3:+84857394 | MS.gene033985:CDS |
| TCATCTTCCTCGTCGTCAAT+AGG | 0.362423 | 4.3:-84856626 | None:intergenic |
| TGTAGACCCGAAGGAAAATA+AGG | 0.369166 | 4.3:-84857317 | None:intergenic |
| TCTTCATCCTTAGCTTTCTC+TGG | 0.371345 | 4.3:-84856830 | None:intergenic |
| AACAAATGATGGGTCTACTT+TGG | 0.384601 | 4.3:+84857339 | MS.gene033985:CDS |
| CGTATACCAGCGAAAGGGTT+TGG | 0.386213 | 4.3:-84856749 | None:intergenic |
| GAAGCCTTGGGAGAGTTCTC+TGG | 0.387453 | 4.3:-84857868 | None:intergenic |
| ACATCAGGAGCTTTGCTCTC+TGG | 0.390832 | 4.3:-84856863 | None:intergenic |
| TCTACTTTGGGTAGTGGGTC+CGG | 0.396921 | 4.3:+84857352 | MS.gene033985:CDS |
| TCTTGAAAGTCCCGGCTTCA+AGG | 0.403876 | 4.3:-84856655 | None:intergenic |
| TTCCTGCAGTGTTTCAGTCT+TGG | 0.406473 | 4.3:-84857470 | None:intergenic |
| GAGCGACAGTGACAACTCTA+AGG | 0.408430 | 4.3:+84856958 | MS.gene033985:CDS |
| ATGCCTTCACAGGTCTTGTT+GGG | 0.412610 | 4.3:+84857278 | MS.gene033985:CDS |
| AGCTCAAACATCAGAAGCCT+TGG | 0.417787 | 4.3:-84857881 | None:intergenic |
| CCTTACAGTCGTCAAAGAAA+AGG | 0.420646 | 4.3:+84856573 | MS.gene033985:CDS |
| CCAAGACCTAAAGGCTGGTC+AGG | 0.423398 | 4.3:-84857394 | None:intergenic |
| ACAAATGATGGGTCTACTTT+GGG | 0.423993 | 4.3:+84857340 | MS.gene033985:CDS |
| GGTTGGAAGGAACGTGGAAA+GGG | 0.429315 | 4.3:+84857571 | MS.gene033985:CDS |
| TTTGCATTGAAGTTCAAAGA+TGG | 0.435158 | 4.3:+84857775 | MS.gene033985:CDS |
| ACTGAATCCACTGCCAAGTC+TGG | 0.437172 | 4.3:+84856785 | MS.gene033985:CDS |
| AATGCCTTCACAGGTCTTGT+TGG | 0.440022 | 4.3:+84857277 | MS.gene033985:CDS |
| TATTTGTGAGCTTCATTTCA+GGG | 0.440319 | 4.3:-84857693 | None:intergenic |
| TTCGGGTCTACAACAAATGA+TGG | 0.442733 | 4.3:+84857328 | MS.gene033985:CDS |
| AGGCAAGGAGCTTGCGGAGA+AGG | 0.452508 | 4.3:+84856934 | MS.gene033985:CDS |
| GGTAGATAATGAACAGAGTA+AGG | 0.452713 | 4.3:+84856979 | MS.gene033985:CDS |
| TCGTCAAAGAAAAGGGCTGC+TGG | 0.453932 | 4.3:+84856581 | MS.gene033985:CDS |
| AGTAAGTGAAAGCAAGGATA+AGG | 0.460546 | 4.3:+84857150 | MS.gene033985:CDS |
| AGTAAGCGAAAGCAAGGATA+AGG | 0.460546 | 4.3:+84857180 | MS.gene033985:CDS |
| GATTGAAAATGAGGATAAGA+AGG | 0.464936 | 4.3:+84857012 | MS.gene033985:CDS |
| GCTCACAAATATGGAGAAGA+AGG | 0.474042 | 4.3:+84857705 | MS.gene033985:CDS |
| ATGACGCTGCCCTTGAAGCC+GGG | 0.474337 | 4.3:+84856645 | MS.gene033985:CDS |
| GATGACGCTGCCCTTGAAGC+CGG | 0.476093 | 4.3:+84856644 | MS.gene033985:CDS |
| ATGGGTCTACTTTGGGTAGT+GGG | 0.480263 | 4.3:+84857347 | MS.gene033985:CDS |
| ACTGGCTTTCTTGAAAGTCC+CGG | 0.480603 | 4.3:-84856663 | None:intergenic |
| GGTTGCAAGAACCTCCTCAC+TGG | 0.485123 | 4.3:-84856681 | None:intergenic |
| AAATAGTGAAAGCAAGGATA+AGG | 0.486758 | 4.3:+84857120 | MS.gene033985:CDS |
| CCCTTCAGTGGCACATGCAA+AGG | 0.487875 | 4.3:-84857734 | None:intergenic |
| AGTAGTAGCTTCACCAGACT+TGG | 0.494029 | 4.3:-84856798 | None:intergenic |
| GGTCTTGGTTTATCTAACTC+TGG | 0.494050 | 4.3:+84857409 | MS.gene033985:CDS |
| AGGTTGGAAGGAACGTGGAA+AGG | 0.496279 | 4.3:+84857570 | MS.gene033985:CDS |
| TTAGATAAACCAAGACCTAA+AGG | 0.499520 | 4.3:-84857403 | None:intergenic |
| GTAGATTTGTCCTCAACATC+AGG | 0.499844 | 4.3:-84856878 | None:intergenic |
| CAGGAAGTCGTCATAGAAAC+CGG | 0.499987 | 4.3:+84857487 | MS.gene033985:CDS |
| CGTCGTCAATAGGAGTGTCT+CGG | 0.502212 | 4.3:-84856616 | None:intergenic |
| GCTGTTGAAATGATTTGAAA+GGG | 0.504844 | 4.3:-84857240 | None:intergenic |
| CTTACAGTCGTCAAAGAAAA+GGG | 0.505584 | 4.3:+84856574 | MS.gene033985:CDS |
| GATGGGTCTACTTTGGGTAG+TGG | 0.506943 | 4.3:+84857346 | MS.gene033985:CDS |
| TTGCATTGAAGTTCAAAGAT+GGG | 0.509535 | 4.3:+84857776 | MS.gene033985:CDS |
| AGTCTTGAAATCCTCCACTA+TGG | 0.509950 | 4.3:-84857800 | None:intergenic |
| TTGGAGTAGATTTATTCTGT+TGG | 0.517375 | 4.3:-84856730 | None:intergenic |
| TTGAGTTTGCAGATGGAGGT+TGG | 0.519670 | 4.3:+84857554 | MS.gene033985:CDS |
| TTGTTTGAGTTTGCAGATGG+AGG | 0.522768 | 4.3:+84857550 | MS.gene033985:CDS |
| TGGACGTAAGATTGAAAATG+AGG | 0.525984 | 4.3:+84857003 | MS.gene033985:CDS |
| GTCGTCAATAGGAGTGTCTC+GGG | 0.531300 | 4.3:-84856615 | None:intergenic |
| GTGTTGTTTGAGTTTGCAGA+TGG | 0.533735 | 4.3:+84857547 | MS.gene033985:CDS |
| CGGTGAAGAAAACGAGGAAG+TGG | 0.537379 | 4.3:+84857507 | MS.gene033985:CDS |
| CTTGAAAGTCCCGGCTTCAA+GGG | 0.539539 | 4.3:-84856654 | None:intergenic |
| AGCTGTTGAAATGATTTGAA+AGG | 0.539560 | 4.3:-84857241 | None:intergenic |
| GTTTGCAGATGGAGGTTGGA+AGG | 0.542312 | 4.3:+84857558 | MS.gene033985:CDS |
| GCTCAAACATCAGAAGCCTT+GGG | 0.542932 | 4.3:-84857880 | None:intergenic |
| GGTTCTTGCAACCAGAAGAA+TGG | 0.542934 | 4.3:+84856691 | MS.gene033985:CDS |
| AGACAAAGTAAGTGAAAGCA+AGG | 0.543217 | 4.3:+84857144 | MS.gene033985:CDS |
| GATAATGAACAGAGTAAGGA+TGG | 0.544320 | 4.3:+84856983 | MS.gene033985:CDS |
| AACTAGTGGAACAGAAAAGA+AGG | 0.545059 | 4.3:+84857612 | MS.gene033985:CDS |
| AAAGGGCCACCTTCAGCAGT+AGG | 0.547591 | 4.3:-84857223 | None:intergenic |
| AGCAATCAAAATGCCTTCAC+AGG | 0.548375 | 4.3:+84857268 | MS.gene033985:CDS |
| AGACAAAGTAAGCGAAAGCA+AGG | 0.554995 | 4.3:+84857174 | MS.gene033985:CDS |
| ATAAACCAAGACCTAAAGGC+TGG | 0.555593 | 4.3:-84857399 | None:intergenic |
| AGCTTCACCAGACTTGGCAG+TGG | 0.560811 | 4.3:-84856792 | None:intergenic |
| TTCCAAGACTGAAACACTGC+AGG | 0.563759 | 4.3:+84857468 | MS.gene033985:CDS |
| CTTAGACCTCATAAGAACTC+TGG | 0.564260 | 4.3:-84857635 | None:intergenic |
| GCAGTGGATTCAGTAGGAGC+AGG | 0.564389 | 4.3:-84856776 | None:intergenic |
| CGTCAAAGAAAAGGGCTGCT+GGG | 0.566029 | 4.3:+84856582 | MS.gene033985:CDS |
| CAATGCAGGCAAGGAGCTTG+CGG | 0.566828 | 4.3:+84856928 | MS.gene033985:CDS |
| AAGACGGTCTTTCCCTTCAG+TGG | 0.567228 | 4.3:-84857746 | None:intergenic |
| TCTACTCCAAACCCTTTCGC+TGG | 0.571206 | 4.3:+84856743 | MS.gene033985:CDS |
| GGCAAGCGTATACCAGCGAA+AGG | 0.572904 | 4.3:-84856755 | None:intergenic |
| GACTGCTATCACAGCACACA+AGG | 0.572911 | 4.3:+84857819 | MS.gene033985:CDS |
| GAGCAAAGCTCCTGATGTTG+AGG | 0.573315 | 4.3:+84856868 | MS.gene033985:CDS |
| AGAGTTCTTATGAGGTCTAA+GGG | 0.575744 | 4.3:+84857637 | MS.gene033985:CDS |
| CCTTTGCATGTGCCACTGAA+GGG | 0.575965 | 4.3:+84857734 | MS.gene033985:CDS |
| GAACGGAAATAGTGAAAGCA+AGG | 0.577253 | 4.3:+84857114 | MS.gene033985:CDS |
| AGAAGGCCAGAGTTCTTATG+AGG | 0.577595 | 4.3:+84857629 | MS.gene033985:CDS |
| ACCTTTGCATGTGCCACTGA+AGG | 0.579423 | 4.3:+84857733 | MS.gene033985:CDS |
| GTTCAAAGATGGGTCCATAG+TGG | 0.583030 | 4.3:+84857786 | MS.gene033985:CDS |
| AGACCCAACAAGACCTGTGA+AGG | 0.595406 | 4.3:-84857281 | None:intergenic |
| GTGAAAGTGAATGTAACTAG+TGG | 0.595453 | 4.3:+84857598 | MS.gene033985:CDS |
| TACTTCAAACAACGATGTTG+CGG | 0.596477 | 4.3:+84856898 | MS.gene033985:CDS |
| AGTGACGAGCCTACTGCTGA+AGG | 0.599077 | 4.3:+84857214 | MS.gene033985:CDS |
| GGACAGAAACAATGCAGGCA+AGG | 0.604459 | 4.3:+84856919 | MS.gene033985:CDS |
| ATCATTTGTTGTAGACCCGA+AGG | 0.607405 | 4.3:-84857326 | None:intergenic |
| GTTGCTGATAAGGAGAGTGC+CGG | 0.608076 | 4.3:+84857037 | MS.gene033985:CDS |
| TCAATGCAAATGTTGAAAGA+CGG | 0.609075 | 4.3:-84857762 | None:intergenic |
| TCGGGTCTACAACAAATGAT+GGG | 0.616965 | 4.3:+84857329 | MS.gene033985:CDS |
| GACGAGCCTACTGCTGAAGG+TGG | 0.621305 | 4.3:+84857217 | MS.gene033985:CDS |
| GTTGCGGACAGAAACAATGC+AGG | 0.625399 | 4.3:+84856914 | MS.gene033985:CDS |
| CTCACAAATATGGAGAAGAA+GGG | 0.630174 | 4.3:+84857706 | MS.gene033985:CDS |
| GACTCCAGAGAACTCTCCCA+AGG | 0.630564 | 4.3:+84857864 | MS.gene033985:CDS |
| AACGCAGCCAGAGAAAGCTA+AGG | 0.632276 | 4.3:+84856823 | MS.gene033985:CDS |
| TATCACAGCACACAAGGGTG+AGG | 0.638173 | 4.3:+84857825 | MS.gene033985:CDS |
| CAAAGATGGGTCCATAGTGG+AGG | 0.639977 | 4.3:+84857789 | MS.gene033985:CDS |
| GCAAGCGTATACCAGCGAAA+GGG | 0.643938 | 4.3:-84856754 | None:intergenic |
| TTTCAAGAAAGCCAGTGAGG+AGG | 0.650952 | 4.3:+84856670 | MS.gene033985:CDS |
| ACTGAGAACAGTGATAAGAA+CGG | 0.660347 | 4.3:+84857097 | MS.gene033985:CDS |
| GACTTTCAAGAAAGCCAGTG+AGG | 0.667433 | 4.3:+84856667 | MS.gene033985:CDS |
| GATGGAGGTTGGAAGGAACG+TGG | 0.668623 | 4.3:+84857565 | MS.gene033985:CDS |
| GACTTGGCAGTGGATTCAGT+AGG | 0.688140 | 4.3:-84856782 | None:intergenic |
| AGAAACCGGTGAAGAAAACG+AGG | 0.713487 | 4.3:+84857501 | MS.gene033985:CDS |
| ACTGCTATCACAGCACACAA+GGG | 0.723065 | 4.3:+84857820 | MS.gene033985:CDS |
| AGACACTCCTATTGACGACG+AGG | 0.724010 | 4.3:+84856619 | MS.gene033985:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| ! | TTTCAATCCAAAAATAGAAC+CGG | - | chr4.3:84857374-84857393 | None:intergenic | 25.0% |
| !!! | TCAGTATTTTTTTCTTCTGT+AGG | - | chr4.3:84857082-84857101 | None:intergenic | 25.0% |
| AAATAGTGAAAGCAAGGATA+AGG | + | chr4.3:84857120-84857139 | MS.gene033985:CDS | 30.0% | |
| AGCTGTTGAAATGATTTGAA+AGG | - | chr4.3:84857244-84857263 | None:intergenic | 30.0% | |
| ATATTTGTGAGCTTCATTTC+AGG | - | chr4.3:84857697-84857716 | None:intergenic | 30.0% | |
| GATTGAAAATGAGGATAAGA+AGG | + | chr4.3:84857012-84857031 | MS.gene033985:CDS | 30.0% | |
| GCTGTTGAAATGATTTGAAA+GGG | - | chr4.3:84857243-84857262 | None:intergenic | 30.0% | |
| TATTTGTGAGCTTCATTTCA+GGG | - | chr4.3:84857696-84857715 | None:intergenic | 30.0% | |
| TCAATGCAAATGTTGAAAGA+CGG | - | chr4.3:84857765-84857784 | None:intergenic | 30.0% | |
| TGAAATGAAGCTCACAAATA+TGG | + | chr4.3:84857696-84857715 | MS.gene033985:CDS | 30.0% | |
| TTAGATAAACCAAGACCTAA+AGG | - | chr4.3:84857406-84857425 | None:intergenic | 30.0% | |
| TTGCATTGAAGTTCAAAGAT+GGG | + | chr4.3:84857776-84857795 | MS.gene033985:CDS | 30.0% | |
| TTGGAGTAGATTTATTCTGT+TGG | - | chr4.3:84856733-84856752 | None:intergenic | 30.0% | |
| TTTGCATTGAAGTTCAAAGA+TGG | + | chr4.3:84857775-84857794 | MS.gene033985:CDS | 30.0% | |
| !!! | GTATTTTTTTCTTCTGTAGG+AGG | - | chr4.3:84857079-84857098 | None:intergenic | 30.0% |
| !!! | TCTTCTTCCTTATTTTCCTT+CGG | + | chr4.3:84857310-84857329 | MS.gene033985:CDS | 30.0% |
| AACTAGTGGAACAGAAAAGA+AGG | + | chr4.3:84857612-84857631 | MS.gene033985:CDS | 35.0% | |
| ACTGAGAACAGTGATAAGAA+CGG | + | chr4.3:84857097-84857116 | MS.gene033985:CDS | 35.0% | |
| AGACAAAGTAAGTGAAAGCA+AGG | + | chr4.3:84857144-84857163 | MS.gene033985:CDS | 35.0% | |
| AGAGTTCTTATGAGGTCTAA+GGG | + | chr4.3:84857637-84857656 | MS.gene033985:CDS | 35.0% | |
| AGTAAGTGAAAGCAAGGATA+AGG | + | chr4.3:84857150-84857169 | MS.gene033985:CDS | 35.0% | |
| CTCACAAATATGGAGAAGAA+GGG | + | chr4.3:84857706-84857725 | MS.gene033985:CDS | 35.0% | |
| CTTACAGTCGTCAAAGAAAA+GGG | + | chr4.3:84856574-84856593 | MS.gene033985:CDS | 35.0% | |
| GATAATGAACAGAGTAAGGA+TGG | + | chr4.3:84856983-84857002 | MS.gene033985:CDS | 35.0% | |
| GGTAGATAATGAACAGAGTA+AGG | + | chr4.3:84856979-84856998 | MS.gene033985:CDS | 35.0% | |
| GTGAAAGTGAATGTAACTAG+TGG | + | chr4.3:84857598-84857617 | MS.gene033985:CDS | 35.0% | |
| TAAGAAGGAAGTTGCTGATA+AGG | + | chr4.3:84857027-84857046 | MS.gene033985:CDS | 35.0% | |
| TACTTCAAACAACGATGTTG+CGG | + | chr4.3:84856898-84856917 | MS.gene033985:CDS | 35.0% | |
| TGGACGTAAGATTGAAAATG+AGG | + | chr4.3:84857003-84857022 | MS.gene033985:CDS | 35.0% | |
| ! | TTATCTAACTCTGGAAGTTC+TGG | + | chr4.3:84857418-84857437 | MS.gene033985:CDS | 35.0% |
| !! | AACAAATGATGGGTCTACTT+TGG | + | chr4.3:84857339-84857358 | MS.gene033985:CDS | 35.0% |
| !! | ACAAATGATGGGTCTACTTT+GGG | + | chr4.3:84857340-84857359 | MS.gene033985:CDS | 35.0% |
| !! | TGTTACTTTGACCATTCTTC+TGG | - | chr4.3:84856705-84856724 | None:intergenic | 35.0% |
| !!! | CTTCTTCCTTATTTTCCTTC+GGG | + | chr4.3:84857311-84857330 | MS.gene033985:CDS | 35.0% |
| AGACAAAGTAAGCGAAAGCA+AGG | + | chr4.3:84857174-84857193 | MS.gene033985:CDS | 40.0% | |
| AGCAATCAAAATGCCTTCAC+AGG | + | chr4.3:84857268-84857287 | MS.gene033985:CDS | 40.0% | |
| AGTAAGCGAAAGCAAGGATA+AGG | + | chr4.3:84857180-84857199 | MS.gene033985:CDS | 40.0% | |
| AGTCTTGAAATCCTCCACTA+TGG | - | chr4.3:84857803-84857822 | None:intergenic | 40.0% | |
| ATAAACCAAGACCTAAAGGC+TGG | - | chr4.3:84857402-84857421 | None:intergenic | 40.0% | |
| CAGAGTTCTTATGAGGTCTA+AGG | + | chr4.3:84857636-84857655 | MS.gene033985:CDS | 40.0% | |
| CCTTACAGTCGTCAAAGAAA+AGG | + | chr4.3:84856573-84856592 | MS.gene033985:CDS | 40.0% | |
| CTTAGACCTCATAAGAACTC+TGG | - | chr4.3:84857638-84857657 | None:intergenic | 40.0% | |
| GAACGGAAATAGTGAAAGCA+AGG | + | chr4.3:84857114-84857133 | MS.gene033985:CDS | 40.0% | |
| GCTCACAAATATGGAGAAGA+AGG | + | chr4.3:84857705-84857724 | MS.gene033985:CDS | 40.0% | |
| GGTCTTGGTTTATCTAACTC+TGG | + | chr4.3:84857409-84857428 | MS.gene033985:CDS | 40.0% | |
| GTAGATTTGTCCTCAACATC+AGG | - | chr4.3:84856881-84856900 | None:intergenic | 40.0% | |
| TCGGGTCTACAACAAATGAT+GGG | + | chr4.3:84857329-84857348 | MS.gene033985:CDS | 40.0% | |
| TGTAGACCCGAAGGAAAATA+AGG | - | chr4.3:84857320-84857339 | None:intergenic | 40.0% | |
| TTCGGGTCTACAACAAATGA+TGG | + | chr4.3:84857328-84857347 | MS.gene033985:CDS | 40.0% | |
| ! | CCTTTTCTTTGACGACTGTA+AGG | - | chr4.3:84856576-84856595 | None:intergenic | 40.0% |
| ! | TCTTCATCCTTAGCTTTCTC+TGG | - | chr4.3:84856833-84856852 | None:intergenic | 40.0% |
| ! | TTGTTTGAGTTTGCAGATGG+AGG | + | chr4.3:84857550-84857569 | MS.gene033985:CDS | 40.0% |
| !! | ATCATTTGTTGTAGACCCGA+AGG | - | chr4.3:84857329-84857348 | None:intergenic | 40.0% |
| !! | GTGTTGTTTGAGTTTGCAGA+TGG | + | chr4.3:84857547-84857566 | MS.gene033985:CDS | 40.0% |
| !!! | AACTCTGGAAGTTCTGGTTT+TGG | + | chr4.3:84857424-84857443 | MS.gene033985:CDS | 40.0% |
| !!! | AGGTTCTTTTTCGATCTCAC+CGG | - | chr4.3:84857059-84857078 | None:intergenic | 40.0% |
| !!! | AGTTCTGGTTTTGGAACATC+AGG | + | chr4.3:84857433-84857452 | MS.gene033985:CDS | 40.0% |
| ACTGCTATCACAGCACACAA+GGG | + | chr4.3:84857820-84857839 | MS.gene033985:CDS | 45.0% | |
| AGAAACCGGTGAAGAAAACG+AGG | + | chr4.3:84857501-84857520 | MS.gene033985:CDS | 45.0% | |
| AGAAGGCCAGAGTTCTTATG+AGG | + | chr4.3:84857629-84857648 | MS.gene033985:CDS | 45.0% | |
| AGTAGTAGCTTCACCAGACT+TGG | - | chr4.3:84856801-84856820 | None:intergenic | 45.0% | |
| ATGGGTCTACTTTGGGTAGT+GGG | + | chr4.3:84857347-84857366 | MS.gene033985:CDS | 45.0% | |
| CAGGAAGTCGTCATAGAAAC+CGG | + | chr4.3:84857487-84857506 | MS.gene033985:CDS | 45.0% | |
| GACTTTCAAGAAAGCCAGTG+AGG | + | chr4.3:84856667-84856686 | MS.gene033985:CDS | 45.0% | |
| GGTTCTTGCAACCAGAAGAA+TGG | + | chr4.3:84856691-84856710 | MS.gene033985:CDS | 45.0% | |
| GTTCAAAGATGGGTCCATAG+TGG | + | chr4.3:84857786-84857805 | MS.gene033985:CDS | 45.0% | |
| TCATCTTCCTCGTCGTCAAT+AGG | - | chr4.3:84856629-84856648 | None:intergenic | 45.0% | |
| TTCCAAGACTGAAACACTGC+AGG | + | chr4.3:84857468-84857487 | MS.gene033985:CDS | 45.0% | |
| TTCCTGCAGTGTTTCAGTCT+TGG | - | chr4.3:84857473-84857492 | None:intergenic | 45.0% | |
| TTGAAACCTGACCAGCCTTT+AGG | + | chr4.3:84857388-84857407 | MS.gene033985:CDS | 45.0% | |
| TTGAGTTTGCAGATGGAGGT+TGG | + | chr4.3:84857554-84857573 | MS.gene033985:CDS | 45.0% | |
| TTTCAAGAAAGCCAGTGAGG+AGG | + | chr4.3:84856670-84856689 | MS.gene033985:CDS | 45.0% | |
| ! | AATGCCTTCACAGGTCTTGT+TGG | + | chr4.3:84857277-84857296 | MS.gene033985:CDS | 45.0% |
| ! | AGTGGGTCCGGTTCTATTTT+TGG | + | chr4.3:84857364-84857383 | MS.gene033985:CDS | 45.0% |
| ! | CACTTCCTCGTTTTCTTCAC+CGG | - | chr4.3:84857509-84857528 | None:intergenic | 45.0% |
| !! | ACTGGCTTTCTTGAAAGTCC+CGG | - | chr4.3:84856666-84856685 | None:intergenic | 45.0% |
| !! | ATGCCTTCACAGGTCTTGTT+GGG | + | chr4.3:84857278-84857297 | MS.gene033985:CDS | 45.0% |
| AACGCAGCCAGAGAAAGCTA+AGG | + | chr4.3:84856823-84856842 | MS.gene033985:CDS | 50.0% | |
| AAGACGGTCTTTCCCTTCAG+TGG | - | chr4.3:84857749-84857768 | None:intergenic | 50.0% | |
| ACATCAGGAGCTTTGCTCTC+TGG | - | chr4.3:84856866-84856885 | None:intergenic | 50.0% | |
| ACTGAATCCACTGCCAAGTC+TGG | + | chr4.3:84856785-84856804 | MS.gene033985:CDS | 50.0% | |
| AGACACTCCTATTGACGACG+AGG | + | chr4.3:84856619-84856638 | MS.gene033985:CDS | 50.0% | |
| AGACCCAACAAGACCTGTGA+AGG | - | chr4.3:84857284-84857303 | None:intergenic | 50.0% | |
| AGGTTGGAAGGAACGTGGAA+AGG | + | chr4.3:84857570-84857589 | MS.gene033985:CDS | 50.0% | |
| CAAAGATGGGTCCATAGTGG+AGG | + | chr4.3:84857789-84857808 | MS.gene033985:CDS | 50.0% | |
| CGGTGAAGAAAACGAGGAAG+TGG | + | chr4.3:84857507-84857526 | MS.gene033985:CDS | 50.0% | |
| CGTATACCAGCGAAAGGGTT+TGG | - | chr4.3:84856752-84856771 | None:intergenic | 50.0% | |
| CGTCAAAGAAAAGGGCTGCT+GGG | + | chr4.3:84856582-84856601 | MS.gene033985:CDS | 50.0% | |
| CTTGAAAGTCCCGGCTTCAA+GGG | - | chr4.3:84856657-84856676 | None:intergenic | 50.0% | |
| GACTGCTATCACAGCACACA+AGG | + | chr4.3:84857819-84857838 | MS.gene033985:CDS | 50.0% | |
| GAGCAAAGCTCCTGATGTTG+AGG | + | chr4.3:84856868-84856887 | MS.gene033985:CDS | 50.0% | |
| GAGCGACAGTGACAACTCTA+AGG | + | chr4.3:84856958-84856977 | MS.gene033985:CDS | 50.0% | |
| GATGGGTCTACTTTGGGTAG+TGG | + | chr4.3:84857346-84857365 | MS.gene033985:CDS | 50.0% | |
| GCAAGCGTATACCAGCGAAA+GGG | - | chr4.3:84856757-84856776 | None:intergenic | 50.0% | |
| GGACAGAAACAATGCAGGCA+AGG | + | chr4.3:84856919-84856938 | MS.gene033985:CDS | 50.0% | |
| GGTTGGAAGGAACGTGGAAA+GGG | + | chr4.3:84857571-84857590 | MS.gene033985:CDS | 50.0% | |
| GTTGCGGACAGAAACAATGC+AGG | + | chr4.3:84856914-84856933 | MS.gene033985:CDS | 50.0% | |
| GTTTGCAGATGGAGGTTGGA+AGG | + | chr4.3:84857558-84857577 | MS.gene033985:CDS | 50.0% | |
| TATCACAGCACACAAGGGTG+AGG | + | chr4.3:84857825-84857844 | MS.gene033985:CDS | 50.0% | |
| TCGTCAAAGAAAAGGGCTGC+TGG | + | chr4.3:84856581-84856600 | MS.gene033985:CDS | 50.0% | |
| TCTACTCCAAACCCTTTCGC+TGG | + | chr4.3:84856743-84856762 | MS.gene033985:CDS | 50.0% | |
| TCTTGAAAGTCCCGGCTTCA+AGG | - | chr4.3:84856658-84856677 | None:intergenic | 50.0% | |
| ! | ACCTTTGCATGTGCCACTGA+AGG | + | chr4.3:84857733-84857752 | MS.gene033985:CDS | 50.0% |
| ! | CCTTTGCATGTGCCACTGAA+GGG | + | chr4.3:84857734-84857753 | MS.gene033985:CDS | 50.0% |
| ! | GACTTGGCAGTGGATTCAGT+AGG | - | chr4.3:84856785-84856804 | None:intergenic | 50.0% |
| ! | GTTGCTGATAAGGAGAGTGC+CGG | + | chr4.3:84857037-84857056 | MS.gene033985:CDS | 50.0% |
| !! | CGTCGTCAATAGGAGTGTCT+CGG | - | chr4.3:84856619-84856638 | None:intergenic | 50.0% |
| !! | GTCGTCAATAGGAGTGTCTC+GGG | - | chr4.3:84856618-84856637 | None:intergenic | 50.0% |
| !! | TCTACTTTGGGTAGTGGGTC+CGG | + | chr4.3:84857352-84857371 | MS.gene033985:CDS | 50.0% |
| !! | TTCACAGGTCTTGTTGGGTC+TGG | + | chr4.3:84857283-84857302 | MS.gene033985:CDS | 50.0% |
| AAAGGGCCACCTTCAGCAGT+AGG | - | chr4.3:84857226-84857245 | None:intergenic | 55.0% | |
| AGCTTCACCAGACTTGGCAG+TGG | - | chr4.3:84856795-84856814 | None:intergenic | 55.0% | |
| AGTGACGAGCCTACTGCTGA+AGG | + | chr4.3:84857214-84857233 | MS.gene033985:CDS | 55.0% | |
| CAATGCAGGCAAGGAGCTTG+CGG | + | chr4.3:84856928-84856947 | MS.gene033985:CDS | 55.0% | |
| CCCTTCAGTGGCACATGCAA+AGG | - | chr4.3:84857737-84857756 | None:intergenic | 55.0% | |
| CCTGACCAGCCTTTAGGTCT+TGG | + | chr4.3:84857394-84857413 | MS.gene033985:CDS | 55.0% | |
| GAAGCCTTGGGAGAGTTCTC+TGG | - | chr4.3:84857871-84857890 | None:intergenic | 55.0% | |
| GACTCCAGAGAACTCTCCCA+AGG | + | chr4.3:84857864-84857883 | MS.gene033985:CDS | 55.0% | |
| GATGGAGGTTGGAAGGAACG+TGG | + | chr4.3:84857565-84857584 | MS.gene033985:CDS | 55.0% | |
| GGCAAGCGTATACCAGCGAA+AGG | - | chr4.3:84856758-84856777 | None:intergenic | 55.0% | |
| GGTTGCAAGAACCTCCTCAC+TGG | - | chr4.3:84856684-84856703 | None:intergenic | 55.0% | |
| ! | CCAAGACCTAAAGGCTGGTC+AGG | - | chr4.3:84857397-84857416 | None:intergenic | 55.0% |
| ! | GCAGTGGATTCAGTAGGAGC+AGG | - | chr4.3:84856779-84856798 | None:intergenic | 55.0% |
| AGGCAAGGAGCTTGCGGAGA+AGG | + | chr4.3:84856934-84856953 | MS.gene033985:CDS | 60.0% | |
| ATGACGCTGCCCTTGAAGCC+GGG | + | chr4.3:84856645-84856664 | MS.gene033985:CDS | 60.0% | |
| GACGAGCCTACTGCTGAAGG+TGG | + | chr4.3:84857217-84857236 | MS.gene033985:CDS | 60.0% | |
| GATGACGCTGCCCTTGAAGC+CGG | + | chr4.3:84856644-84856663 | MS.gene033985:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.3 | gene | 84856554 | 84857900 | 84856554 | ID=MS.gene033985 |
| chr4.3 | mRNA | 84856554 | 84857900 | 84856554 | ID=MS.gene033985.t1;Parent=MS.gene033985 |
| chr4.3 | exon | 84856554 | 84857900 | 84856554 | ID=MS.gene033985.t1.exon1;Parent=MS.gene033985.t1 |
| chr4.3 | CDS | 84856554 | 84857900 | 84856554 | ID=cds.MS.gene033985.t1;Parent=MS.gene033985.t1 |
| Gene Sequence |
| Protein sequence |
