Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene39989.t1 | AAF19528.1 | 98.4 | 243 | 4 | 0 | 1 | 243 | 1 | 243 | 1.90E-126 | 463 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene39989.t1 | Q9LE82 | 67.2 | 244 | 73 | 3 | 1 | 243 | 1 | 238 | 3.4e-84 | 313.9 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene39989.t1 | Q9SBS1 | 98.4 | 243 | 4 | 0 | 1 | 243 | 1 | 243 | 1.4e-126 | 463.0 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene050838 | MS.gene39989 | 0.876052 | 1.90E-68 | -1.69E-46 |
| MS.gene051003 | MS.gene39989 | 0.819442 | 1.16E-52 | -1.69E-46 |
| MS.gene051234 | MS.gene39989 | 0.81976 | 9.80E-53 | -1.69E-46 |
| MS.gene053058 | MS.gene39989 | 0.811324 | 7.41E-51 | -1.69E-46 |
| MS.gene057094 | MS.gene39989 | 0.828056 | 1.11E-54 | -1.69E-46 |
| MS.gene059171 | MS.gene39989 | 0.829255 | 5.70E-55 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene39989 | MS.gene015341 | PPI |
| MS.gene54215 | MS.gene39989 | PPI |
| MS.gene39989 | MS.gene32605 | PPI |
| MS.gene39989 | MS.gene24901 | PPI |
| MS.gene39989 | MS.gene09683 | PPI |
| MS.gene33355 | MS.gene39989 | PPI |
| MS.gene39989 | MS.gene90308 | PPI |
| MS.gene39989 | MS.gene21497 | PPI |
| MS.gene39989 | MS.gene014809 | PPI |
| MS.gene39989 | MS.gene014807 | PPI |
| MS.gene39989 | MS.gene32604 | PPI |
| MS.gene39989 | MS.gene072925 | PPI |
| MS.gene39989 | MS.gene32606 | PPI |
| MS.gene39989 | MS.gene91712 | PPI |
| MS.gene39989 | MS.gene072924 | PPI |
| MS.gene39989 | MS.gene014808 | PPI |
| MS.gene39989 | MS.gene072926 | PPI |
| MS.gene39989 | MS.gene64546 | PPI |
| MS.gene39989 | MS.gene033985 | PPI |
| MS.gene39989 | MS.gene79541 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene39989.t1 | MTR_1g072250 | 96.811 | 533 | 17 | 0 | 1 | 533 | 1 | 533 | 0.0 | 1041 |
| MS.gene39989.t1 | MTR_1g105040 | 68.880 | 527 | 162 | 2 | 9 | 533 | 6 | 532 | 0.0 | 712 |
| MS.gene39989.t1 | MTR_5g035590 | 27.660 | 329 | 207 | 5 | 204 | 502 | 39 | 366 | 5.37e-23 | 102 |
| MS.gene39989.t1 | MTR_5g035590 | 27.138 | 269 | 196 | 0 | 224 | 492 | 32 | 300 | 1.02e-20 | 95.1 |
| MS.gene39989.t1 | MTR_5g035590 | 26.374 | 273 | 171 | 3 | 221 | 492 | 1 | 244 | 6.45e-16 | 80.5 |
| MS.gene39989.t1 | MTR_5g035590 | 25.362 | 276 | 174 | 4 | 204 | 447 | 151 | 426 | 3.88e-11 | 65.5 |
| MS.gene39989.t1 | MTR_5g035590 | 26.748 | 329 | 210 | 4 | 204 | 502 | 216 | 543 | 9.14e-23 | 102 |
| MS.gene39989.t1 | MTR_5g035590 | 27.138 | 269 | 196 | 0 | 224 | 492 | 209 | 477 | 2.03e-20 | 95.1 |
| MS.gene39989.t1 | MTR_5g035590 | 25.166 | 302 | 194 | 4 | 192 | 492 | 151 | 421 | 9.94e-17 | 83.6 |
| MS.gene39989.t1 | MTR_5g035590 | 25.362 | 276 | 174 | 4 | 204 | 447 | 328 | 603 | 3.22e-11 | 66.2 |
| MS.gene39989.t1 | MTR_3g102500 | 46.067 | 89 | 45 | 2 | 17 | 104 | 36 | 122 | 8.11e-18 | 81.3 |
| MS.gene39989.t1 | MTR_1g018710 | 35.000 | 100 | 63 | 1 | 6 | 105 | 17 | 114 | 2.24e-14 | 70.9 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene39989.t1 | AT3G63130 | 69.109 | 505 | 149 | 3 | 1 | 504 | 1 | 499 | 0.0 | 708 |
| MS.gene39989.t1 | AT3G63130 | 69.109 | 505 | 149 | 3 | 1 | 504 | 1 | 499 | 0.0 | 708 |
| MS.gene39989.t1 | AT5G19320 | 67.546 | 493 | 158 | 2 | 11 | 501 | 10 | 502 | 0.0 | 637 |
| MS.gene39989.t1 | AT5G19320 | 67.546 | 493 | 158 | 2 | 11 | 501 | 10 | 502 | 0.0 | 637 |
| MS.gene39989.t1 | AT3G06000 | 50.543 | 184 | 78 | 2 | 321 | 504 | 16 | 186 | 1.26e-48 | 167 |
| MS.gene39989.t1 | AT1G10510 | 30.292 | 274 | 191 | 0 | 219 | 492 | 203 | 476 | 2.19e-25 | 110 |
| MS.gene39989.t1 | AT1G10510 | 30.389 | 283 | 192 | 4 | 211 | 489 | 307 | 588 | 4.75e-22 | 100 |
| MS.gene39989.t1 | AT1G10510 | 30.038 | 263 | 178 | 5 | 205 | 462 | 328 | 589 | 1.88e-21 | 98.6 |
| MS.gene39989.t1 | AT1G47200 | 36.697 | 109 | 67 | 1 | 13 | 121 | 56 | 162 | 4.65e-15 | 73.9 |
| MS.gene39989.t1 | AT5G43070 | 41.758 | 91 | 49 | 2 | 12 | 101 | 39 | 126 | 4.84e-15 | 73.2 |
Find 113 sgRNAs with CRISPR-Local
Find 141 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGCACCGTCACTGGAAATTT+TGG | 0.158218 | 1.4:+59219036 | MS.gene39989:CDS |
| GCAACTTAAATCCAGGTTTC+TGG | 0.190819 | 1.4:-59219285 | None:intergenic |
| TCAGATCAACTTCACTTAAT+TGG | 0.209579 | 1.4:-59219210 | None:intergenic |
| CCTCAGTTATTTGAACTTAG+AGG | 0.267220 | 1.4:+59218973 | MS.gene39989:CDS |
| CGTCTCCAGTCATGTTATTA+TGG | 0.271627 | 1.4:-59218724 | None:intergenic |
| ACCTGACATGCTGGGTCCTT+TGG | 0.274094 | 1.4:+59219375 | MS.gene39989:CDS |
| CATATCTTTGTAAAAGAGTT+TGG | 0.287321 | 1.4:-59218344 | None:intergenic |
| CAAGAGGGAAGGAGGAGAAT+GGG | 0.312236 | 1.4:+59218204 | MS.gene39989:CDS |
| TTGCTCTTGCTGAAGCGCTT+GGG | 0.313724 | 1.4:+59218840 | MS.gene39989:CDS |
| TGAAGGGATTGATGAGTTAA+AGG | 0.318385 | 1.4:+59219336 | MS.gene39989:CDS |
| TGTTTCAGTAATAGAAGTTT+TGG | 0.325309 | 1.4:+59218365 | MS.gene39989:CDS |
| ACTTCAATAGCTTCTGCTTC+TGG | 0.333568 | 1.4:-59218479 | None:intergenic |
| GTTGCTCTTGCTGAAGCGCT+TGG | 0.338191 | 1.4:+59218839 | MS.gene39989:CDS |
| CCATTCTCCTCCTTCCCTCT+TGG | 0.345911 | 1.4:-59218203 | None:intergenic |
| TCATCAACGTCCTCTCCTTC+AGG | 0.355513 | 1.4:-59219409 | None:intergenic |
| CGATTCTGATAATGATGAAT+TGG | 0.382076 | 1.4:+59219444 | MS.gene39989:CDS |
| TGTGAAACGTTCCCCAGCTT+TGG | 0.391512 | 1.4:+59218772 | MS.gene39989:CDS |
| AGCCCTTGCTAATGCTTTGA+AGG | 0.393810 | 1.4:+59219009 | MS.gene39989:CDS |
| CCCTTCCACTGAGAAGCTTA+AGG | 0.398979 | 1.4:+59218691 | MS.gene39989:CDS |
| CCAAGAGGGAAGGAGGAGAA+TGG | 0.407320 | 1.4:+59218203 | MS.gene39989:CDS |
| GAAGGAATCTGCACCGTCAC+TGG | 0.422448 | 1.4:+59219027 | MS.gene39989:CDS |
| AAAGAGTTTGGTCCCATCAA+TGG | 0.422926 | 1.4:-59218332 | None:intergenic |
| CACCCATGGCATTATTTGAC+AGG | 0.423148 | 1.4:-59218553 | None:intergenic |
| AGAACTTCTGAAACCATTGA+TGG | 0.424052 | 1.4:+59218319 | MS.gene39989:CDS |
| TCCAAAGGACCCAGCATGTC+AGG | 0.424980 | 1.4:-59219376 | None:intergenic |
| GAGCTTTATTTGATGAATGA+TGG | 0.428296 | 1.4:+59218629 | MS.gene39989:CDS |
| ACAAATTTGATCACATGGTC+TGG | 0.437019 | 1.4:+59219235 | MS.gene39989:CDS |
| TGGGGAGTTGATATCTGAAA+AGG | 0.439605 | 1.4:+59218223 | MS.gene39989:CDS |
| AAATAATGCCATGGGTGAAA+AGG | 0.442002 | 1.4:+59218559 | MS.gene39989:CDS |
| GCCAACTTCATTTCTGATGA+AGG | 0.446090 | 1.4:+59219319 | MS.gene39989:CDS |
| CACCGAAAATCTTCCAAAGC+TGG | 0.450378 | 1.4:-59218785 | None:intergenic |
| AATAATGCCATGGGTGAAAA+GGG | 0.461364 | 1.4:+59218560 | MS.gene39989:CDS |
| CATAAGCTTACTCGATTCCT+TGG | 0.462204 | 1.4:-59218159 | None:intergenic |
| AGAAAATAGACGGAGTCGTC+AGG | 0.468919 | 1.4:-59217998 | None:intergenic |
| CGGTGTTCATCTACCAGAGT+AGG | 0.471423 | 1.4:+59218803 | MS.gene39989:CDS |
| AGGTGCAGGTTTAATTAGTA+AGG | 0.472052 | 1.4:+59219171 | MS.gene39989:CDS |
| ATCTTTAATTGATATTAGCA+TGG | 0.476224 | 1.4:-59218414 | None:intergenic |
| CCTTAAATCACAAAATGACT+TGG | 0.476235 | 1.4:+59218604 | MS.gene39989:CDS |
| GGCCTCCAAGTCAGAGTACT+AGG | 0.483558 | 1.4:+59217946 | MS.gene39989:CDS |
| ATTCTCTGATAAATTTAACT+TGG | 0.487211 | 1.4:-59219134 | None:intergenic |
| CTGATAAATTTAACTTGGTG+AGG | 0.487395 | 1.4:-59219129 | None:intergenic |
| ATCGAGTAAGCTTATGTTGG+AGG | 0.487701 | 1.4:+59218166 | MS.gene39989:CDS |
| ACCGAAAATCTTCCAAAGCT+GGG | 0.488948 | 1.4:-59218784 | None:intergenic |
| GAGAATGAATTGAAAGATGA+AGG | 0.489019 | 1.4:+59219151 | MS.gene39989:CDS |
| GAAGCTGTTGTCCAGAAACC+TGG | 0.491319 | 1.4:+59219274 | MS.gene39989:CDS |
| TGCTCTTGCTGAAGCGCTTG+GGG | 0.498032 | 1.4:+59218841 | MS.gene39989:CDS |
| TAAATCACAAAATGACTTGG+AGG | 0.498668 | 1.4:+59218607 | MS.gene39989:CDS |
| CATTTCCATAATAACATGAC+TGG | 0.503127 | 1.4:+59218719 | MS.gene39989:CDS |
| AACATGTTTGGTGTGGAAGC+TGG | 0.506518 | 1.4:+59218899 | MS.gene39989:CDS |
| CCAACTTCATTTCTGATGAA+GGG | 0.507173 | 1.4:+59219320 | MS.gene39989:CDS |
| GATTTGCGTGACAACATGTT+TGG | 0.507634 | 1.4:+59218887 | MS.gene39989:CDS |
| AATTAAAGATCAACTGAAAG+AGG | 0.511896 | 1.4:+59218427 | MS.gene39989:CDS |
| TCTGTAAGATCAGCAAATAC+AGG | 0.513065 | 1.4:-59218944 | None:intergenic |
| ATATTCAGCAACTTAAATCC+AGG | 0.517009 | 1.4:-59219292 | None:intergenic |
| GCAGAACTCCCATCACCATC+AGG | 0.519389 | 1.4:-59218122 | None:intergenic |
| TGCGACCCAACACTTTGAAA+AGG | 0.522092 | 1.4:+59218097 | MS.gene39989:CDS |
| TGCTGTGCAAATTTATGCCA+AGG | 0.523338 | 1.4:+59218142 | MS.gene39989:CDS |
| ACCTTAAGCTTCTCAGTGGA+AGG | 0.523910 | 1.4:-59218692 | None:intergenic |
| GGGGAGTTGATATCTGAAAA+GGG | 0.524553 | 1.4:+59218224 | MS.gene39989:CDS |
| TCTTTAATTGATATTAGCAT+GGG | 0.527745 | 1.4:-59218413 | None:intergenic |
| AACCTAGTACTCTGACTTGG+AGG | 0.528886 | 1.4:-59217948 | None:intergenic |
| ATGAATCTTCTTAAATCTCA+AGG | 0.529266 | 1.4:-59219483 | None:intergenic |
| GAAAAGGAGCCTGATGGTGA+TGG | 0.530765 | 1.4:+59218113 | MS.gene39989:CDS |
| TAACAAAGATGAGGCTGAGA+AGG | 0.532357 | 1.4:+59218040 | MS.gene39989:CDS |
| AACAGCTTCTGCCAACAGCT+TGG | 0.534878 | 1.4:-59219260 | None:intergenic |
| TGTTAGTTGAACGAATGGTC+AGG | 0.535510 | 1.4:+59217973 | MS.gene39989:CDS |
| TAACCTGTCAAATAATGCCA+TGG | 0.536436 | 1.4:+59218550 | MS.gene39989:CDS |
| CCCTTCATCAGAAATGAAGT+TGG | 0.537535 | 1.4:-59219320 | None:intergenic |
| TTTGTGATTTAAGGAGTGCC+CGG | 0.539029 | 1.4:-59218595 | None:intergenic |
| AGGTTTAATTAGTAAGGCGC+TGG | 0.544570 | 1.4:+59219177 | MS.gene39989:CDS |
| AAGAGGGAAGGAGGAGAATG+GGG | 0.549859 | 1.4:+59218205 | MS.gene39989:CDS |
| GTTGATGTTAGTTGAACGAA+TGG | 0.555548 | 1.4:+59217968 | MS.gene39989:CDS |
| TCTACCAGAGTAGGCTCTGA+AGG | 0.560072 | 1.4:+59218812 | MS.gene39989:CDS |
| GAAGGATGCAAAGGAAATTG+AGG | 0.561870 | 1.4:+59218058 | MS.gene39989:CDS |
| AAGAGGACCAAGAGGGAAGG+AGG | 0.565309 | 1.4:+59218196 | MS.gene39989:CDS |
| ATCAACCTAGTACTCTGACT+TGG | 0.566163 | 1.4:-59217951 | None:intergenic |
| ATTCCTTCAAAGCATTAGCA+AGG | 0.570197 | 1.4:-59219012 | None:intergenic |
| AGGAGAGGACGTTGATGAAG+AGG | 0.572691 | 1.4:+59219414 | MS.gene39989:CDS |
| AGTAAGGCGCTGGAAGGTCG+TGG | 0.574225 | 1.4:+59219187 | MS.gene39989:CDS |
| GAACTTCTGAAACCATTGAT+GGG | 0.575048 | 1.4:+59218320 | MS.gene39989:CDS |
| TTCCTTCAAAGCATTAGCAA+GGG | 0.575261 | 1.4:-59219011 | None:intergenic |
| GAACACTTTCAATCAAGTTG+TGG | 0.586485 | 1.4:+59217925 | MS.gene39989:CDS |
| AACCTGTCAAATAATGCCAT+GGG | 0.587490 | 1.4:+59218551 | MS.gene39989:CDS |
| TCAGGATCATTCTCATCCAA+AGG | 0.589310 | 1.4:-59219391 | None:intergenic |
| GGAATCGAGTAAGCTTATGT+TGG | 0.591102 | 1.4:+59218163 | MS.gene39989:CDS |
| ACCACCTTCAGAGCCTACTC+TGG | 0.593405 | 1.4:-59218816 | None:intergenic |
| ATGGTCTGGAGCCAAGCTGT+TGG | 0.593553 | 1.4:+59219249 | MS.gene39989:CDS |
| TTAATTAGTAAGGCGCTGGA+AGG | 0.600794 | 1.4:+59219181 | MS.gene39989:CDS |
| GAATTGAAAGATGAAGGTGC+AGG | 0.601464 | 1.4:+59219157 | MS.gene39989:CDS |
| TAATGCCATGGGTGAAAAGG+GGG | 0.611795 | 1.4:+59218562 | MS.gene39989:CDS |
| AAAAGGAGCCTGATGGTGAT+GGG | 0.618474 | 1.4:+59218114 | MS.gene39989:CDS |
| TACTTTCTAGAGAAAATAGA+CGG | 0.618656 | 1.4:-59218008 | None:intergenic |
| GATGAATGATGGTATATCAG+AGG | 0.619244 | 1.4:+59218640 | MS.gene39989:CDS |
| TGAGGCTGAGAAGGATGCAA+AGG | 0.619486 | 1.4:+59218049 | MS.gene39989:CDS |
| ATATCCAAAATTTCCAGTGA+CGG | 0.620331 | 1.4:-59219040 | None:intergenic |
| GAAAAGAGGACCAAGAGGGA+AGG | 0.620402 | 1.4:+59218193 | MS.gene39989:CDS |
| CACTTTGAAAAGGAGCCTGA+TGG | 0.620964 | 1.4:+59218107 | MS.gene39989:CDS |
| CCTTAAGCTTCTCAGTGGAA+GGG | 0.628373 | 1.4:-59218691 | None:intergenic |
| TGAGTACAAATTTGATCACA+TGG | 0.630339 | 1.4:+59219230 | MS.gene39989:CDS |
| CCGAAAATCTTCCAAAGCTG+GGG | 0.630768 | 1.4:-59218783 | None:intergenic |
| TTGGATGAGAATGATCCTGA+AGG | 0.631234 | 1.4:+59219394 | MS.gene39989:CDS |
| ATAATGCCATGGGTGAAAAG+GGG | 0.631439 | 1.4:+59218561 | MS.gene39989:CDS |
| TGAGAATGATCCTGAAGGAG+AGG | 0.636079 | 1.4:+59219399 | MS.gene39989:CDS |
| TGATTGAAAGTGTTCGATGT+TGG | 0.637029 | 1.4:-59217917 | None:intergenic |
| AATAACATGACTGGAGACGA+AGG | 0.637173 | 1.4:+59218728 | MS.gene39989:CDS |
| GAATTGGAGTCAAAACTGAA+AGG | 0.640332 | 1.4:+59219460 | MS.gene39989:CDS |
| TGGACTTCTTAACAAAGATG+AGG | 0.646938 | 1.4:+59218031 | MS.gene39989:CDS |
| AAGAACCTTAAGCTTCTCAG+TGG | 0.653888 | 1.4:-59218696 | None:intergenic |
| CCTCTAAGTTCAAATAACTG+AGG | 0.660358 | 1.4:-59218973 | None:intergenic |
| GCGTGACAACATGTTTGGTG+TGG | 0.661175 | 1.4:+59218892 | MS.gene39989:CDS |
| TATTTGAACTTAGAGGACGA+TGG | 0.662229 | 1.4:+59218980 | MS.gene39989:CDS |
| ACCAGAGTAGGCTCTGAAGG+TGG | 0.671940 | 1.4:+59218815 | MS.gene39989:CDS |
| AGTGTTCGATGTTGGTACGA+CGG | 0.709109 | 1.4:-59217909 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATCTTTAATTGATATTAGCA+TGG | - | chr1.4:59218417-59218436 | None:intergenic | 20.0% |
| !! | ATTCTCTGATAAATTTAACT+TGG | - | chr1.4:59219137-59219156 | None:intergenic | 20.0% |
| !! | TCTTTAATTGATATTAGCAT+GGG | - | chr1.4:59218416-59218435 | None:intergenic | 20.0% |
| ! | AATTAAAGATCAACTGAAAG+AGG | + | chr1.4:59218427-59218446 | MS.gene39989:CDS | 25.0% |
| ! | CATATCTTTGTAAAAGAGTT+TGG | - | chr1.4:59218347-59218366 | None:intergenic | 25.0% |
| !! | ATATTTTCTTCTGCATTAGA+AGG | + | chr1.4:59218509-59218528 | MS.gene39989:CDS | 25.0% |
| !! | TACTTTCTAGAGAAAATAGA+CGG | - | chr1.4:59218011-59218030 | None:intergenic | 25.0% |
| !! | TGTTTCAGTAATAGAAGTTT+TGG | + | chr1.4:59218365-59218384 | MS.gene39989:CDS | 25.0% |
| !!! | AAACTGTTTTTGACATTTCT+GGG | + | chr1.4:59218261-59218280 | MS.gene39989:CDS | 25.0% |
| !!! | TCTATTTTCTCTAGAAAGTA+TGG | + | chr1.4:59218011-59218030 | MS.gene39989:CDS | 25.0% |
| ATATCCAAAATTTCCAGTGA+CGG | - | chr1.4:59219043-59219062 | None:intergenic | 30.0% | |
| ATATTCAGCAACTTAAATCC+AGG | - | chr1.4:59219295-59219314 | None:intergenic | 30.0% | |
| CATTTCCATAATAACATGAC+TGG | + | chr1.4:59218719-59218738 | MS.gene39989:CDS | 30.0% | |
| CCTTAAATCACAAAATGACT+TGG | + | chr1.4:59218604-59218623 | MS.gene39989:CDS | 30.0% | |
| GAGAATGAATTGAAAGATGA+AGG | + | chr1.4:59219151-59219170 | MS.gene39989:CDS | 30.0% | |
| TCAGATCAACTTCACTTAAT+TGG | - | chr1.4:59219213-59219232 | None:intergenic | 30.0% | |
| TGAGTACAAATTTGATCACA+TGG | + | chr1.4:59219230-59219249 | MS.gene39989:CDS | 30.0% | |
| ! | ATCTGTCAGATTTTATTGCT+GGG | + | chr1.4:59218453-59218472 | MS.gene39989:CDS | 30.0% |
| ! | CGATTCTGATAATGATGAAT+TGG | + | chr1.4:59219444-59219463 | MS.gene39989:CDS | 30.0% |
| ! | TAAATCACAAAATGACTTGG+AGG | + | chr1.4:59218607-59218626 | MS.gene39989:CDS | 30.0% |
| !! | CCAAGTCATTTTGTGATTTA+AGG | - | chr1.4:59218607-59218626 | None:intergenic | 30.0% |
| !! | CTGATAAATTTAACTTGGTG+AGG | - | chr1.4:59219132-59219151 | None:intergenic | 30.0% |
| !! | GAGCTTTATTTGATGAATGA+TGG | + | chr1.4:59218629-59218648 | MS.gene39989:CDS | 30.0% |
| !!! | AACTGTTTTTGACATTTCTG+GGG | + | chr1.4:59218262-59218281 | MS.gene39989:CDS | 30.0% |
| !!! | CAGTAATAGAAGTTTTGGTT+TGG | + | chr1.4:59218370-59218389 | MS.gene39989:CDS | 30.0% |
| !!! | GAAACTGTTTTTGACATTTC+TGG | + | chr1.4:59218260-59218279 | MS.gene39989:CDS | 30.0% |
| AAATAATGCCATGGGTGAAA+AGG | + | chr1.4:59218559-59218578 | MS.gene39989:CDS | 35.0% | |
| AACCTGTCAAATAATGCCAT+GGG | + | chr1.4:59218551-59218570 | MS.gene39989:CDS | 35.0% | |
| AATAATGCCATGGGTGAAAA+GGG | + | chr1.4:59218560-59218579 | MS.gene39989:CDS | 35.0% | |
| ACAAATTTGATCACATGGTC+TGG | + | chr1.4:59219235-59219254 | MS.gene39989:CDS | 35.0% | |
| AGGTGCAGGTTTAATTAGTA+AGG | + | chr1.4:59219171-59219190 | MS.gene39989:CDS | 35.0% | |
| CCAACTTCATTTCTGATGAA+GGG | + | chr1.4:59219320-59219339 | MS.gene39989:CDS | 35.0% | |
| CCTCAGTTATTTGAACTTAG+AGG | + | chr1.4:59218973-59218992 | MS.gene39989:CDS | 35.0% | |
| CCTCTAAGTTCAAATAACTG+AGG | - | chr1.4:59218976-59218995 | None:intergenic | 35.0% | |
| GAATTGGAGTCAAAACTGAA+AGG | + | chr1.4:59219460-59219479 | MS.gene39989:CDS | 35.0% | |
| GATGAATGATGGTATATCAG+AGG | + | chr1.4:59218640-59218659 | MS.gene39989:CDS | 35.0% | |
| GTTGATGTTAGTTGAACGAA+TGG | + | chr1.4:59217968-59217987 | MS.gene39989:CDS | 35.0% | |
| TAACCTGTCAAATAATGCCA+TGG | + | chr1.4:59218550-59218569 | MS.gene39989:CDS | 35.0% | |
| TATTTGAACTTAGAGGACGA+TGG | + | chr1.4:59218980-59218999 | MS.gene39989:CDS | 35.0% | |
| TCTGTAAGATCAGCAAATAC+AGG | - | chr1.4:59218947-59218966 | None:intergenic | 35.0% | |
| TGAAGGGATTGATGAGTTAA+AGG | + | chr1.4:59219336-59219355 | MS.gene39989:CDS | 35.0% | |
| TGGACTTCTTAACAAAGATG+AGG | + | chr1.4:59218031-59218050 | MS.gene39989:CDS | 35.0% | |
| ! | ATTCCTTCAAAGCATTAGCA+AGG | - | chr1.4:59219015-59219034 | None:intergenic | 35.0% |
| ! | GAACACTTTCAATCAAGTTG+TGG | + | chr1.4:59217925-59217944 | MS.gene39989:CDS | 35.0% |
| ! | GATCTGTCAGATTTTATTGC+TGG | + | chr1.4:59218452-59218471 | MS.gene39989:CDS | 35.0% |
| ! | GTCACTGGAAATTTTGGATA+TGG | + | chr1.4:59219042-59219061 | MS.gene39989:CDS | 35.0% |
| ! | TGGAAATTTTGGATATGGCT+GGG | + | chr1.4:59219047-59219066 | MS.gene39989:CDS | 35.0% |
| ! | TTCCTTCAAAGCATTAGCAA+GGG | - | chr1.4:59219014-59219033 | None:intergenic | 35.0% |
| !! | AGAACTTCTGAAACCATTGA+TGG | + | chr1.4:59218319-59218338 | MS.gene39989:CDS | 35.0% |
| !! | GAACTTCTGAAACCATTGAT+GGG | + | chr1.4:59218320-59218339 | MS.gene39989:CDS | 35.0% |
| !! | TGATTGAAAGTGTTCGATGT+TGG | - | chr1.4:59217920-59217939 | None:intergenic | 35.0% |
| !! | TTTTGAAAAGAGGACCAAGA+GGG | + | chr1.4:59218189-59218208 | MS.gene39989:CDS | 35.0% |
| !!! | ACTGTTTTTGACATTTCTGG+GGG | + | chr1.4:59218263-59218282 | MS.gene39989:CDS | 35.0% |
| !!! | ATGTTGGAGGTTTTGAAAAG+AGG | + | chr1.4:59218179-59218198 | MS.gene39989:CDS | 35.0% |
| AAAAACTCACCTGACATGCT+GGG | + | chr1.4:59219367-59219386 | MS.gene39989:CDS | 40.0% | |
| AAAGAGTTTGGTCCCATCAA+TGG | - | chr1.4:59218335-59218354 | None:intergenic | 40.0% | |
| AAGAACCTTAAGCTTCTCAG+TGG | - | chr1.4:59218699-59218718 | None:intergenic | 40.0% | |
| AATAACATGACTGGAGACGA+AGG | + | chr1.4:59218728-59218747 | MS.gene39989:CDS | 40.0% | |
| ACCGAAAATCTTCCAAAGCT+GGG | - | chr1.4:59218787-59218806 | None:intergenic | 40.0% | |
| ACTTCAATAGCTTCTGCTTC+TGG | - | chr1.4:59218482-59218501 | None:intergenic | 40.0% | |
| AGGTTTAATTAGTAAGGCGC+TGG | + | chr1.4:59219177-59219196 | MS.gene39989:CDS | 40.0% | |
| ATAATGCCATGGGTGAAAAG+GGG | + | chr1.4:59218561-59218580 | MS.gene39989:CDS | 40.0% | |
| ATCAACCTAGTACTCTGACT+TGG | - | chr1.4:59217954-59217973 | None:intergenic | 40.0% | |
| ATCGAGTAAGCTTATGTTGG+AGG | + | chr1.4:59218166-59218185 | MS.gene39989:CDS | 40.0% | |
| CATAAGCTTACTCGATTCCT+TGG | - | chr1.4:59218162-59218181 | None:intergenic | 40.0% | |
| CCCTTCATCAGAAATGAAGT+TGG | - | chr1.4:59219323-59219342 | None:intergenic | 40.0% | |
| CGTCTCCAGTCATGTTATTA+TGG | - | chr1.4:59218727-59218746 | None:intergenic | 40.0% | |
| GAAGGATGCAAAGGAAATTG+AGG | + | chr1.4:59218058-59218077 | MS.gene39989:CDS | 40.0% | |
| GATTTGCGTGACAACATGTT+TGG | + | chr1.4:59218887-59218906 | MS.gene39989:CDS | 40.0% | |
| GCAACTTAAATCCAGGTTTC+TGG | - | chr1.4:59219288-59219307 | None:intergenic | 40.0% | |
| GCCAACTTCATTTCTGATGA+AGG | + | chr1.4:59219319-59219338 | MS.gene39989:CDS | 40.0% | |
| GGAATCGAGTAAGCTTATGT+TGG | + | chr1.4:59218163-59218182 | MS.gene39989:CDS | 40.0% | |
| TAAAAACTCACCTGACATGC+TGG | + | chr1.4:59219366-59219385 | MS.gene39989:CDS | 40.0% | |
| TAACAAAGATGAGGCTGAGA+AGG | + | chr1.4:59218040-59218059 | MS.gene39989:CDS | 40.0% | |
| TCAGGATCATTCTCATCCAA+AGG | - | chr1.4:59219394-59219413 | None:intergenic | 40.0% | |
| TGCTGTGCAAATTTATGCCA+AGG | + | chr1.4:59218142-59218161 | MS.gene39989:CDS | 40.0% | |
| TGTTAGTTGAACGAATGGTC+AGG | + | chr1.4:59217973-59217992 | MS.gene39989:CDS | 40.0% | |
| TTGGATGAGAATGATCCTGA+AGG | + | chr1.4:59219394-59219413 | MS.gene39989:CDS | 40.0% | |
| ! | AATTGAGGATGCAGCTTTTG+TGG | + | chr1.4:59218073-59218092 | MS.gene39989:CDS | 40.0% |
| ! | CTGGAAATTTTGGATATGGC+TGG | + | chr1.4:59219046-59219065 | MS.gene39989:CDS | 40.0% |
| ! | GAATTGAAAGATGAAGGTGC+AGG | + | chr1.4:59219157-59219176 | MS.gene39989:CDS | 40.0% |
| ! | GTCGCAGAGCTTTTATTGAT+GGG | + | chr1.4:59218285-59218304 | MS.gene39989:CDS | 40.0% |
| ! | TCGCAGAGCTTTTATTGATG+GGG | + | chr1.4:59218286-59218305 | MS.gene39989:CDS | 40.0% |
| !! | AGGCTCCTTTTCAAAGTGTT+GGG | - | chr1.4:59218105-59218124 | None:intergenic | 40.0% |
| !! | GGGGAGTTGATATCTGAAAA+GGG | + | chr1.4:59218224-59218243 | MS.gene39989:CDS | 40.0% |
| !! | TGGGGAGTTGATATCTGAAA+AGG | + | chr1.4:59218223-59218242 | MS.gene39989:CDS | 40.0% |
| !! | TTAATTAGTAAGGCGCTGGA+AGG | + | chr1.4:59219181-59219200 | MS.gene39989:CDS | 40.0% |
| !! | TTTGTGATTTAAGGAGTGCC+CGG | - | chr1.4:59218598-59218617 | None:intergenic | 40.0% |
| !!! | GTTTTGAAAAGAGGACCAAG+AGG | + | chr1.4:59218188-59218207 | MS.gene39989:CDS | 40.0% |
| ACCTTAAGCTTCTCAGTGGA+AGG | - | chr1.4:59218695-59218714 | None:intergenic | 45.0% | |
| AGAAAATAGACGGAGTCGTC+AGG | - | chr1.4:59218001-59218020 | None:intergenic | 45.0% | |
| AGCCCTTGCTAATGCTTTGA+AGG | + | chr1.4:59219009-59219028 | MS.gene39989:CDS | 45.0% | |
| AGTGTTCGATGTTGGTACGA+CGG | - | chr1.4:59217912-59217931 | None:intergenic | 45.0% | |
| CACCCATGGCATTATTTGAC+AGG | - | chr1.4:59218556-59218575 | None:intergenic | 45.0% | |
| CACCGAAAATCTTCCAAAGC+TGG | - | chr1.4:59218788-59218807 | None:intergenic | 45.0% | |
| CCGAAAATCTTCCAAAGCTG+GGG | - | chr1.4:59218786-59218805 | None:intergenic | 45.0% | |
| CCTTAAGCTTCTCAGTGGAA+GGG | - | chr1.4:59218694-59218713 | None:intergenic | 45.0% | |
| TAATGCCATGGGTGAAAAGG+GGG | + | chr1.4:59218562-59218581 | MS.gene39989:CDS | 45.0% | |
| TGAGAATGATCCTGAAGGAG+AGG | + | chr1.4:59219399-59219418 | MS.gene39989:CDS | 45.0% | |
| ! | AAAAGGAGCCTGATGGTGAT+GGG | + | chr1.4:59218114-59218133 | MS.gene39989:CDS | 45.0% |
| ! | AAAAGGGGGTTAGAGCATTC+CGG | + | chr1.4:59218576-59218595 | MS.gene39989:CDS | 45.0% |
| ! | CACTTTGAAAAGGAGCCTGA+TGG | + | chr1.4:59218107-59218126 | MS.gene39989:CDS | 45.0% |
| ! | CAGAGCTTTTATTGATGGGG+AGG | + | chr1.4:59218289-59218308 | MS.gene39989:CDS | 45.0% |
| ! | CAGGCTCCTTTTCAAAGTGT+TGG | - | chr1.4:59218106-59218125 | None:intergenic | 45.0% |
| ! | GGTCGCAGAGCTTTTATTGA+TGG | + | chr1.4:59218284-59218303 | MS.gene39989:CDS | 45.0% |
| ! | TGCACCGTCACTGGAAATTT+TGG | + | chr1.4:59219036-59219055 | MS.gene39989:CDS | 45.0% |
| ! | TGCGACCCAACACTTTGAAA+AGG | + | chr1.4:59218097-59218116 | MS.gene39989:CDS | 45.0% |
| !! | AACATGTTTGGTGTGGAAGC+TGG | + | chr1.4:59218899-59218918 | MS.gene39989:CDS | 45.0% |
| !! | AACCTAGTACTCTGACTTGG+AGG | - | chr1.4:59217951-59217970 | None:intergenic | 45.0% |
| !!! | CCCCAGCTTTGGAAGATTTT+CGG | + | chr1.4:59218783-59218802 | MS.gene39989:CDS | 45.0% |
| AACAGCTTCTGCCAACAGCT+TGG | - | chr1.4:59219263-59219282 | None:intergenic | 50.0% | |
| AAGAGGGAAGGAGGAGAATG+GGG | + | chr1.4:59218205-59218224 | MS.gene39989:CDS | 50.0% | |
| CAAGAGGGAAGGAGGAGAAT+GGG | + | chr1.4:59218204-59218223 | MS.gene39989:CDS | 50.0% | |
| CCCTTCCACTGAGAAGCTTA+AGG | + | chr1.4:59218691-59218710 | MS.gene39989:CDS | 50.0% | |
| CGGTGTTCATCTACCAGAGT+AGG | + | chr1.4:59218803-59218822 | MS.gene39989:CDS | 50.0% | |
| GAAAAGAGGACCAAGAGGGA+AGG | + | chr1.4:59218193-59218212 | MS.gene39989:CDS | 50.0% | |
| GAAGCTGTTGTCCAGAAACC+TGG | + | chr1.4:59219274-59219293 | MS.gene39989:CDS | 50.0% | |
| TCATCAACGTCCTCTCCTTC+AGG | - | chr1.4:59219412-59219431 | None:intergenic | 50.0% | |
| TGAGGCTGAGAAGGATGCAA+AGG | + | chr1.4:59218049-59218068 | MS.gene39989:CDS | 50.0% | |
| TGTGAAACGTTCCCCAGCTT+TGG | + | chr1.4:59218772-59218791 | MS.gene39989:CDS | 50.0% | |
| ! | AAAGGGGGTTAGAGCATTCC+GGG | + | chr1.4:59218577-59218596 | MS.gene39989:CDS | 50.0% |
| ! | AGGAGAGGACGTTGATGAAG+AGG | + | chr1.4:59219414-59219433 | MS.gene39989:CDS | 50.0% |
| ! | GAAAAGGAGCCTGATGGTGA+TGG | + | chr1.4:59218113-59218132 | MS.gene39989:CDS | 50.0% |
| ! | GCGTGACAACATGTTTGGTG+TGG | + | chr1.4:59218892-59218911 | MS.gene39989:CDS | 50.0% |
| ! | TCTAACCCCCTTTTCACCCA+TGG | - | chr1.4:59218570-59218589 | None:intergenic | 50.0% |
| ! | TCTACCAGAGTAGGCTCTGA+AGG | + | chr1.4:59218812-59218831 | MS.gene39989:CDS | 50.0% |
| ! | TTGCTCTTGCTGAAGCGCTT+GGG | + | chr1.4:59218840-59218859 | MS.gene39989:CDS | 50.0% |
| AAGAGGACCAAGAGGGAAGG+AGG | + | chr1.4:59218196-59218215 | MS.gene39989:CDS | 55.0% | |
| ACCACCTTCAGAGCCTACTC+TGG | - | chr1.4:59218819-59218838 | None:intergenic | 55.0% | |
| ACCTGACATGCTGGGTCCTT+TGG | + | chr1.4:59219375-59219394 | MS.gene39989:CDS | 55.0% | |
| CCAAGAGGGAAGGAGGAGAA+TGG | + | chr1.4:59218203-59218222 | MS.gene39989:CDS | 55.0% | |
| CCATTCTCCTCCTTCCCTCT+TGG | - | chr1.4:59218206-59218225 | None:intergenic | 55.0% | |
| GAAGGAATCTGCACCGTCAC+TGG | + | chr1.4:59219027-59219046 | MS.gene39989:CDS | 55.0% | |
| GCAGAACTCCCATCACCATC+AGG | - | chr1.4:59218125-59218144 | None:intergenic | 55.0% | |
| TCCAAAGGACCCAGCATGTC+AGG | - | chr1.4:59219379-59219398 | None:intergenic | 55.0% | |
| ! | ATGGTCTGGAGCCAAGCTGT+TGG | + | chr1.4:59219249-59219268 | MS.gene39989:CDS | 55.0% |
| ! | GGCCTCCAAGTCAGAGTACT+AGG | + | chr1.4:59217946-59217965 | MS.gene39989:CDS | 55.0% |
| ! | GTTGCTCTTGCTGAAGCGCT+TGG | + | chr1.4:59218839-59218858 | MS.gene39989:CDS | 55.0% |
| ! | TGCTCTTGCTGAAGCGCTTG+GGG | + | chr1.4:59218841-59218860 | MS.gene39989:CDS | 55.0% |
| !! | ACCAGAGTAGGCTCTGAAGG+TGG | + | chr1.4:59218815-59218834 | MS.gene39989:CDS | 55.0% |
| !! | AGTAAGGCGCTGGAAGGTCG+TGG | + | chr1.4:59219187-59219206 | MS.gene39989:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.4 | gene | 59217894 | 59219495 | 59217894 | ID=MS.gene39989 |
| chr1.4 | mRNA | 59217894 | 59219495 | 59217894 | ID=MS.gene39989.t1;Parent=MS.gene39989 |
| chr1.4 | exon | 59217894 | 59219495 | 59217894 | ID=MS.gene39989.t1.exon1;Parent=MS.gene39989.t1 |
| chr1.4 | CDS | 59217894 | 59219495 | 59217894 | ID=cds.MS.gene39989.t1;Parent=MS.gene39989.t1 |
| Gene Sequence |
| Protein sequence |
