Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene036223.t1 | AAF19528.1 | 98.4 | 243 | 4 | 0 | 1 | 243 | 1 | 243 | 8.40E-127 | 464.2 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene036223.t1 | Q9LE82 | 68.0 | 244 | 71 | 3 | 1 | 243 | 1 | 238 | 3.1e-85 | 317.4 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene036223.t1 | Q9SBS1 | 98.4 | 243 | 4 | 0 | 1 | 243 | 1 | 243 | 6.1e-127 | 464.2 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene24901 | MS.gene036223 | PPI |
| MS.gene64546 | MS.gene036223 | PPI |
| MS.gene79541 | MS.gene036223 | PPI |
| MS.gene33355 | MS.gene036223 | PPI |
| MS.gene036223 | MS.gene015341 | PPI |
| MS.gene014808 | MS.gene036223 | PPI |
| MS.gene072925 | MS.gene036223 | PPI |
| MS.gene072924 | MS.gene036223 | PPI |
| MS.gene32604 | MS.gene036223 | PPI |
| MS.gene014809 | MS.gene036223 | PPI |
| MS.gene91712 | MS.gene036223 | PPI |
| MS.gene072926 | MS.gene036223 | PPI |
| MS.gene32606 | MS.gene036223 | PPI |
| MS.gene033985 | MS.gene036223 | PPI |
| MS.gene21497 | MS.gene036223 | PPI |
| MS.gene014807 | MS.gene036223 | PPI |
| MS.gene90308 | MS.gene036223 | PPI |
| MS.gene32605 | MS.gene036223 | PPI |
| MS.gene09683 | MS.gene036223 | PPI |
| MS.gene54215 | MS.gene036223 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene036223.t1 | MTR_1g072250 | 96.998 | 533 | 16 | 0 | 1 | 533 | 1 | 533 | 0.0 | 1043 |
| MS.gene036223.t1 | MTR_1g105040 | 69.070 | 527 | 161 | 2 | 9 | 533 | 6 | 532 | 0.0 | 714 |
| MS.gene036223.t1 | MTR_5g035590 | 27.742 | 310 | 193 | 5 | 204 | 483 | 39 | 347 | 6.47e-23 | 101 |
| MS.gene036223.t1 | MTR_5g035590 | 27.138 | 269 | 196 | 0 | 224 | 492 | 32 | 300 | 1.19e-20 | 94.7 |
| MS.gene036223.t1 | MTR_5g035590 | 26.259 | 278 | 175 | 3 | 221 | 497 | 1 | 249 | 3.90e-16 | 81.3 |
| MS.gene036223.t1 | MTR_5g035590 | 25.362 | 276 | 174 | 4 | 204 | 447 | 151 | 426 | 4.59e-11 | 65.5 |
| MS.gene036223.t1 | MTR_5g035590 | 26.748 | 329 | 210 | 4 | 204 | 502 | 216 | 543 | 1.11e-22 | 102 |
| MS.gene036223.t1 | MTR_5g035590 | 27.138 | 269 | 196 | 0 | 224 | 492 | 209 | 477 | 2.24e-20 | 95.1 |
| MS.gene036223.t1 | MTR_5g035590 | 25.081 | 307 | 198 | 4 | 192 | 497 | 151 | 426 | 5.36e-17 | 84.7 |
| MS.gene036223.t1 | MTR_5g035590 | 25.362 | 276 | 174 | 4 | 204 | 447 | 328 | 603 | 3.42e-11 | 66.2 |
| MS.gene036223.t1 | MTR_3g102500 | 46.067 | 89 | 45 | 2 | 17 | 104 | 36 | 122 | 7.29e-18 | 81.3 |
| MS.gene036223.t1 | MTR_1g018710 | 35.000 | 100 | 63 | 1 | 6 | 105 | 17 | 114 | 1.83e-14 | 70.9 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene036223.t1 | AT3G63130 | 69.505 | 505 | 147 | 3 | 1 | 504 | 1 | 499 | 0.0 | 711 |
| MS.gene036223.t1 | AT3G63130 | 69.505 | 505 | 147 | 3 | 1 | 504 | 1 | 499 | 0.0 | 711 |
| MS.gene036223.t1 | AT5G19320 | 67.748 | 493 | 157 | 2 | 11 | 501 | 10 | 502 | 0.0 | 640 |
| MS.gene036223.t1 | AT5G19320 | 67.748 | 493 | 157 | 2 | 11 | 501 | 10 | 502 | 0.0 | 640 |
| MS.gene036223.t1 | AT3G06000 | 50.543 | 184 | 78 | 2 | 321 | 504 | 16 | 186 | 1.66e-48 | 167 |
| MS.gene036223.t1 | AT1G10510 | 30.292 | 274 | 191 | 0 | 219 | 492 | 203 | 476 | 2.02e-25 | 110 |
| MS.gene036223.t1 | AT1G10510 | 30.389 | 283 | 192 | 4 | 211 | 489 | 307 | 588 | 4.04e-22 | 100 |
| MS.gene036223.t1 | AT1G10510 | 30.038 | 263 | 178 | 5 | 205 | 462 | 328 | 589 | 1.67e-21 | 98.6 |
| MS.gene036223.t1 | AT1G10510 | 25.279 | 269 | 170 | 3 | 283 | 521 | 183 | 450 | 7.37e-11 | 65.1 |
| MS.gene036223.t1 | AT1G47200 | 36.697 | 109 | 67 | 1 | 13 | 121 | 56 | 162 | 4.31e-15 | 73.9 |
| MS.gene036223.t1 | AT5G43070 | 41.111 | 90 | 51 | 1 | 12 | 101 | 39 | 126 | 5.88e-15 | 72.8 |
Find 112 sgRNAs with CRISPR-Local
Find 139 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGCACCGTCACTGGAAATTT+TGG | 0.158218 | 1.3:+52036657 | MS.gene036223:CDS |
| GCAACTTAAATCCAGGTTTC+TGG | 0.190819 | 1.3:-52036906 | None:intergenic |
| TCAGATCAACTTCACTTAAT+TGG | 0.209579 | 1.3:-52036831 | None:intergenic |
| CCTCAGTTATTTGAACTTAG+AGG | 0.267220 | 1.3:+52036594 | MS.gene036223:CDS |
| CGTCTCCAGTCATGTTATTA+TGG | 0.271627 | 1.3:-52036345 | None:intergenic |
| CATATCTTTGTAAAAGAGTT+TGG | 0.287321 | 1.3:-52035965 | None:intergenic |
| CAAGAGGGAAGGAGGAGAAT+GGG | 0.312236 | 1.3:+52035825 | MS.gene036223:CDS |
| TTGCTCTTGCTGAAGCGCTT+GGG | 0.313724 | 1.3:+52036461 | MS.gene036223:CDS |
| TGAAGGGATTGATGAGTTAA+AGG | 0.318385 | 1.3:+52036957 | MS.gene036223:CDS |
| TGTTTCAGTAATAGAAGTTT+TGG | 0.325309 | 1.3:+52035986 | MS.gene036223:CDS |
| TTCATCTTTCAATTCATTCT+CGG | 0.330579 | 1.3:-52036770 | None:intergenic |
| ACTTCAATAGCTTCTGCTTC+TGG | 0.333568 | 1.3:-52036100 | None:intergenic |
| GTTGCTCTTGCTGAAGCGCT+TGG | 0.338191 | 1.3:+52036460 | MS.gene036223:CDS |
| CCATTCTCCTCCTTCCCTCT+TGG | 0.345911 | 1.3:-52035824 | None:intergenic |
| TCATCAACGTCCTCTCCTTC+AGG | 0.355513 | 1.3:-52037030 | None:intergenic |
| CGATTCTGATAATGATGAAT+TGG | 0.382076 | 1.3:+52037065 | MS.gene036223:CDS |
| TGTGAAACGTTCCCCAGCTT+TGG | 0.391512 | 1.3:+52036393 | MS.gene036223:CDS |
| AGCCCTTGCTAATGCTTTGA+AGG | 0.393810 | 1.3:+52036630 | MS.gene036223:CDS |
| CCCTTCCACTGAGAAGCTTA+AGG | 0.398979 | 1.3:+52036312 | MS.gene036223:CDS |
| ACCTGACATACTGGGTCCTT+TGG | 0.399840 | 1.3:+52036996 | MS.gene036223:CDS |
| CCAAGAGGGAAGGAGGAGAA+TGG | 0.407320 | 1.3:+52035824 | MS.gene036223:CDS |
| GAAGGAATCTGCACCGTCAC+TGG | 0.422448 | 1.3:+52036648 | MS.gene036223:CDS |
| AAAGAGTTTGGTCCCATCAA+TGG | 0.422926 | 1.3:-52035953 | None:intergenic |
| CACCCATGGCATTATTTGAC+AGG | 0.423148 | 1.3:-52036174 | None:intergenic |
| AGAACTTCTGAAACCATTGA+TGG | 0.424052 | 1.3:+52035940 | MS.gene036223:CDS |
| GAGCTTTATTTGATGAATGA+TGG | 0.428296 | 1.3:+52036250 | MS.gene036223:CDS |
| ACAAATTTGATCACATGGTC+TGG | 0.437019 | 1.3:+52036856 | MS.gene036223:CDS |
| AGAAAATAGACGGAGTAGTC+AGG | 0.438678 | 1.3:-52035619 | None:intergenic |
| TGGGGAGTTGATATCTGAAA+AGG | 0.439605 | 1.3:+52035844 | MS.gene036223:CDS |
| AAATAATGCCATGGGTGAAA+AGG | 0.442002 | 1.3:+52036180 | MS.gene036223:CDS |
| GCCAACTTCATTTCTGATGA+AGG | 0.446090 | 1.3:+52036940 | MS.gene036223:CDS |
| CACCGAAAATCTTCCAAAGC+TGG | 0.450378 | 1.3:-52036406 | None:intergenic |
| AATAATGCCATGGGTGAAAA+GGG | 0.461364 | 1.3:+52036181 | MS.gene036223:CDS |
| TGCTGTGCAAATTTATGCTA+AGG | 0.463494 | 1.3:+52035763 | MS.gene036223:CDS |
| CGGTGTTCATCTACCAGAGT+AGG | 0.471423 | 1.3:+52036424 | MS.gene036223:CDS |
| TCCAAAGGACCCAGTATGTC+AGG | 0.471858 | 1.3:-52036997 | None:intergenic |
| AGGTGCAGGTTTAATTAGTA+AGG | 0.472052 | 1.3:+52036792 | MS.gene036223:CDS |
| ATCTTTAATTGATATTAGCA+TGG | 0.476224 | 1.3:-52036035 | None:intergenic |
| CCTTAAATCACAAAATGACT+TGG | 0.476235 | 1.3:+52036225 | MS.gene036223:CDS |
| GGCCTCCAAGTCAGAGTACT+AGG | 0.483558 | 1.3:+52035567 | MS.gene036223:CDS |
| ATCGAGTAAGCTTATGTTGG+AGG | 0.487701 | 1.3:+52035787 | MS.gene036223:CDS |
| ACCGAAAATCTTCCAAAGCT+GGG | 0.488948 | 1.3:-52036405 | None:intergenic |
| GAAGCTGTTGTCCAGAAACC+TGG | 0.491319 | 1.3:+52036895 | MS.gene036223:CDS |
| CGGATAAATTTAACTTGGTG+AGG | 0.494899 | 1.3:-52036750 | None:intergenic |
| TGCTCTTGCTGAAGCGCTTG+GGG | 0.498032 | 1.3:+52036462 | MS.gene036223:CDS |
| TAAATCACAAAATGACTTGG+AGG | 0.498668 | 1.3:+52036228 | MS.gene036223:CDS |
| GAGAATGAATTGAAAGATGA+AGG | 0.503082 | 1.3:+52036772 | MS.gene036223:CDS |
| CATTTCCATAATAACATGAC+TGG | 0.503127 | 1.3:+52036340 | MS.gene036223:CDS |
| AACATGTTTGGTGTGGAAGC+TGG | 0.506518 | 1.3:+52036520 | MS.gene036223:CDS |
| CCAACTTCATTTCTGATGAA+GGG | 0.507173 | 1.3:+52036941 | MS.gene036223:CDS |
| GATTTGCGTGACAACATGTT+TGG | 0.507634 | 1.3:+52036508 | MS.gene036223:CDS |
| AATTAAAGATCAACTGAAAG+AGG | 0.511896 | 1.3:+52036048 | MS.gene036223:CDS |
| TCTGTAAGATCAGCAAATAC+AGG | 0.513065 | 1.3:-52036565 | None:intergenic |
| TGCGACCCAGCACTTTGAAA+AGG | 0.516523 | 1.3:+52035718 | MS.gene036223:CDS |
| ATATTCAGCAACTTAAATCC+AGG | 0.517009 | 1.3:-52036913 | None:intergenic |
| GCAGAACTCCCATCACCATC+AGG | 0.519389 | 1.3:-52035743 | None:intergenic |
| ACCTTAAGCTTCTCAGTGGA+AGG | 0.523910 | 1.3:-52036313 | None:intergenic |
| GGGGAGTTGATATCTGAAAA+GGG | 0.524553 | 1.3:+52035845 | MS.gene036223:CDS |
| TCTTTAATTGATATTAGCAT+GGG | 0.527745 | 1.3:-52036034 | None:intergenic |
| AACCTAGTACTCTGACTTGG+AGG | 0.528886 | 1.3:-52035569 | None:intergenic |
| ATGAATCTTCTTAAATCTCA+AGG | 0.529266 | 1.3:-52037104 | None:intergenic |
| GAAAAGGAGCCTGATGGTGA+TGG | 0.530765 | 1.3:+52035734 | MS.gene036223:CDS |
| TAACAAAGATGAGGCTGAGA+AGG | 0.532357 | 1.3:+52035661 | MS.gene036223:CDS |
| AACAGCTTCTGCCAACAGCT+TGG | 0.534878 | 1.3:-52036881 | None:intergenic |
| TAACCTGTCAAATAATGCCA+TGG | 0.536436 | 1.3:+52036171 | MS.gene036223:CDS |
| ATTCTCGGATAAATTTAACT+TGG | 0.537197 | 1.3:-52036755 | None:intergenic |
| CCCTTCATCAGAAATGAAGT+TGG | 0.537535 | 1.3:-52036941 | None:intergenic |
| TTTGTGATTTAAGGAGTGCC+CGG | 0.539029 | 1.3:-52036216 | None:intergenic |
| AGGTTTAATTAGTAAGGCGC+TGG | 0.544570 | 1.3:+52036798 | MS.gene036223:CDS |
| AAGAGGGAAGGAGGAGAATG+GGG | 0.549859 | 1.3:+52035826 | MS.gene036223:CDS |
| GTTGATGTTAGTTGAACGAA+TGG | 0.555548 | 1.3:+52035589 | MS.gene036223:CDS |
| TCTACCAGAGTAGGCTCTGA+AGG | 0.560072 | 1.3:+52036433 | MS.gene036223:CDS |
| GAAGGATGCAAAGGAAATTG+AGG | 0.561870 | 1.3:+52035679 | MS.gene036223:CDS |
| AAGAGGACCAAGAGGGAAGG+AGG | 0.565309 | 1.3:+52035817 | MS.gene036223:CDS |
| ATCAACCTAGTACTCTGACT+TGG | 0.566163 | 1.3:-52035572 | None:intergenic |
| GGAATCGAGTAAGCTTATGT+TGG | 0.568228 | 1.3:+52035784 | MS.gene036223:CDS |
| ATTCCTTCAAAGCATTAGCA+AGG | 0.570197 | 1.3:-52036633 | None:intergenic |
| AGGAGAGGACGTTGATGAAG+AGG | 0.572691 | 1.3:+52037035 | MS.gene036223:CDS |
| AGTAAGGCGCTGGAAGGTCG+TGG | 0.574225 | 1.3:+52036808 | MS.gene036223:CDS |
| GAACTTCTGAAACCATTGAT+GGG | 0.575048 | 1.3:+52035941 | MS.gene036223:CDS |
| TTCCTTCAAAGCATTAGCAA+GGG | 0.575261 | 1.3:-52036632 | None:intergenic |
| GAACACTTTCAATCAAGTTG+TGG | 0.586485 | 1.3:+52035546 | MS.gene036223:CDS |
| AACCTGTCAAATAATGCCAT+GGG | 0.587490 | 1.3:+52036172 | MS.gene036223:CDS |
| TCAGGATCATTCTCATCCAA+AGG | 0.589310 | 1.3:-52037012 | None:intergenic |
| ACCACCTTCAGAGCCTACTC+TGG | 0.593405 | 1.3:-52036437 | None:intergenic |
| ATGGTCTGGAGCCAAGCTGT+TGG | 0.593553 | 1.3:+52036870 | MS.gene036223:CDS |
| TTAATTAGTAAGGCGCTGGA+AGG | 0.600794 | 1.3:+52036802 | MS.gene036223:CDS |
| GAATTGAAAGATGAAGGTGC+AGG | 0.601464 | 1.3:+52036778 | MS.gene036223:CDS |
| TAATGCCATGGGTGAAAAGG+GGG | 0.611795 | 1.3:+52036183 | MS.gene036223:CDS |
| CACTTTGAAAAGGAGCCTGA+TGG | 0.614146 | 1.3:+52035728 | MS.gene036223:CDS |
| AAAAGGAGCCTGATGGTGAT+GGG | 0.618474 | 1.3:+52035735 | MS.gene036223:CDS |
| TACTTTCTAGAGAAAATAGA+CGG | 0.618656 | 1.3:-52035629 | None:intergenic |
| GATGAATGATGGTATATCAG+AGG | 0.619244 | 1.3:+52036261 | MS.gene036223:CDS |
| TGAGGCTGAGAAGGATGCAA+AGG | 0.619486 | 1.3:+52035670 | MS.gene036223:CDS |
| ATATCCAAAATTTCCAGTGA+CGG | 0.620331 | 1.3:-52036661 | None:intergenic |
| GAAAAGAGGACCAAGAGGGA+AGG | 0.620402 | 1.3:+52035814 | MS.gene036223:CDS |
| CCTTAAGCTTCTCAGTGGAA+GGG | 0.628373 | 1.3:-52036312 | None:intergenic |
| TGAGTACAAATTTGATCACA+TGG | 0.630339 | 1.3:+52036851 | MS.gene036223:CDS |
| CCGAAAATCTTCCAAAGCTG+GGG | 0.630768 | 1.3:-52036404 | None:intergenic |
| TTGGATGAGAATGATCCTGA+AGG | 0.631234 | 1.3:+52037015 | MS.gene036223:CDS |
| ATAATGCCATGGGTGAAAAG+GGG | 0.631439 | 1.3:+52036182 | MS.gene036223:CDS |
| TGAGAATGATCCTGAAGGAG+AGG | 0.636079 | 1.3:+52037020 | MS.gene036223:CDS |
| TGATTGAAAGTGTTCGATGT+TGG | 0.637029 | 1.3:-52035538 | None:intergenic |
| AATAACATGACTGGAGACGA+AGG | 0.637173 | 1.3:+52036349 | MS.gene036223:CDS |
| GAATTGGAGTCAAAACTGAA+AGG | 0.640332 | 1.3:+52037081 | MS.gene036223:CDS |
| TGGACTTCTTAACAAAGATG+AGG | 0.646938 | 1.3:+52035652 | MS.gene036223:CDS |
| AAGAACCTTAAGCTTCTCAG+TGG | 0.653888 | 1.3:-52036317 | None:intergenic |
| CCTCTAAGTTCAAATAACTG+AGG | 0.660358 | 1.3:-52036594 | None:intergenic |
| GCGTGACAACATGTTTGGTG+TGG | 0.661175 | 1.3:+52036513 | MS.gene036223:CDS |
| TATTTGAACTTAGAGGACGA+TGG | 0.662229 | 1.3:+52036601 | MS.gene036223:CDS |
| ACCAGAGTAGGCTCTGAAGG+TGG | 0.671940 | 1.3:+52036436 | MS.gene036223:CDS |
| AGTGTTCGATGTTGGTACGA+CGG | 0.709109 | 1.3:-52035530 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATCTTTAATTGATATTAGCA+TGG | - | chr1.3:52036038-52036057 | None:intergenic | 20.0% |
| !! | TCTTTAATTGATATTAGCAT+GGG | - | chr1.3:52036037-52036056 | None:intergenic | 20.0% |
| ! | AATTAAAGATCAACTGAAAG+AGG | + | chr1.3:52036048-52036067 | MS.gene036223:CDS | 25.0% |
| ! | ATTCTCGGATAAATTTAACT+TGG | - | chr1.3:52036758-52036777 | None:intergenic | 25.0% |
| ! | CATATCTTTGTAAAAGAGTT+TGG | - | chr1.3:52035968-52035987 | None:intergenic | 25.0% |
| ! | TTCATCTTTCAATTCATTCT+CGG | - | chr1.3:52036773-52036792 | None:intergenic | 25.0% |
| !! | ATATTTTCTTCTGCATTAGA+AGG | + | chr1.3:52036130-52036149 | MS.gene036223:CDS | 25.0% |
| !! | TACTTTCTAGAGAAAATAGA+CGG | - | chr1.3:52035632-52035651 | None:intergenic | 25.0% |
| !! | TGTTTCAGTAATAGAAGTTT+TGG | + | chr1.3:52035986-52036005 | MS.gene036223:CDS | 25.0% |
| !!! | AAACTGTTTTTGACATTTCT+GGG | + | chr1.3:52035882-52035901 | MS.gene036223:CDS | 25.0% |
| !!! | TCTATTTTCTCTAGAAAGTA+TGG | + | chr1.3:52035632-52035651 | MS.gene036223:CDS | 25.0% |
| ATATCCAAAATTTCCAGTGA+CGG | - | chr1.3:52036664-52036683 | None:intergenic | 30.0% | |
| ATATTCAGCAACTTAAATCC+AGG | - | chr1.3:52036916-52036935 | None:intergenic | 30.0% | |
| CATTTCCATAATAACATGAC+TGG | + | chr1.3:52036340-52036359 | MS.gene036223:CDS | 30.0% | |
| CCTTAAATCACAAAATGACT+TGG | + | chr1.3:52036225-52036244 | MS.gene036223:CDS | 30.0% | |
| GAGAATGAATTGAAAGATGA+AGG | + | chr1.3:52036772-52036791 | MS.gene036223:CDS | 30.0% | |
| TCAGATCAACTTCACTTAAT+TGG | - | chr1.3:52036834-52036853 | None:intergenic | 30.0% | |
| TGAGTACAAATTTGATCACA+TGG | + | chr1.3:52036851-52036870 | MS.gene036223:CDS | 30.0% | |
| ! | ATCTGTCAGATTTTATTGCT+GGG | + | chr1.3:52036074-52036093 | MS.gene036223:CDS | 30.0% |
| ! | CGATTCTGATAATGATGAAT+TGG | + | chr1.3:52037065-52037084 | MS.gene036223:CDS | 30.0% |
| ! | TAAATCACAAAATGACTTGG+AGG | + | chr1.3:52036228-52036247 | MS.gene036223:CDS | 30.0% |
| !! | CCAAGTCATTTTGTGATTTA+AGG | - | chr1.3:52036228-52036247 | None:intergenic | 30.0% |
| !! | GAGCTTTATTTGATGAATGA+TGG | + | chr1.3:52036250-52036269 | MS.gene036223:CDS | 30.0% |
| !!! | AACTGTTTTTGACATTTCTG+GGG | + | chr1.3:52035883-52035902 | MS.gene036223:CDS | 30.0% |
| !!! | CAGTAATAGAAGTTTTGGTT+TGG | + | chr1.3:52035991-52036010 | MS.gene036223:CDS | 30.0% |
| !!! | GAAACTGTTTTTGACATTTC+TGG | + | chr1.3:52035881-52035900 | MS.gene036223:CDS | 30.0% |
| AAAAACTCACCTGACATACT+GGG | + | chr1.3:52036988-52037007 | MS.gene036223:CDS | 35.0% | |
| AAATAATGCCATGGGTGAAA+AGG | + | chr1.3:52036180-52036199 | MS.gene036223:CDS | 35.0% | |
| AACCTGTCAAATAATGCCAT+GGG | + | chr1.3:52036172-52036191 | MS.gene036223:CDS | 35.0% | |
| AATAATGCCATGGGTGAAAA+GGG | + | chr1.3:52036181-52036200 | MS.gene036223:CDS | 35.0% | |
| ACAAATTTGATCACATGGTC+TGG | + | chr1.3:52036856-52036875 | MS.gene036223:CDS | 35.0% | |
| AGGTGCAGGTTTAATTAGTA+AGG | + | chr1.3:52036792-52036811 | MS.gene036223:CDS | 35.0% | |
| CCAACTTCATTTCTGATGAA+GGG | + | chr1.3:52036941-52036960 | MS.gene036223:CDS | 35.0% | |
| CCTCAGTTATTTGAACTTAG+AGG | + | chr1.3:52036594-52036613 | MS.gene036223:CDS | 35.0% | |
| CCTCTAAGTTCAAATAACTG+AGG | - | chr1.3:52036597-52036616 | None:intergenic | 35.0% | |
| GAATTGGAGTCAAAACTGAA+AGG | + | chr1.3:52037081-52037100 | MS.gene036223:CDS | 35.0% | |
| GATGAATGATGGTATATCAG+AGG | + | chr1.3:52036261-52036280 | MS.gene036223:CDS | 35.0% | |
| GTTGATGTTAGTTGAACGAA+TGG | + | chr1.3:52035589-52035608 | MS.gene036223:CDS | 35.0% | |
| TAAAAACTCACCTGACATAC+TGG | + | chr1.3:52036987-52037006 | MS.gene036223:CDS | 35.0% | |
| TAACCTGTCAAATAATGCCA+TGG | + | chr1.3:52036171-52036190 | MS.gene036223:CDS | 35.0% | |
| TATTTGAACTTAGAGGACGA+TGG | + | chr1.3:52036601-52036620 | MS.gene036223:CDS | 35.0% | |
| TCTGTAAGATCAGCAAATAC+AGG | - | chr1.3:52036568-52036587 | None:intergenic | 35.0% | |
| TGAAGGGATTGATGAGTTAA+AGG | + | chr1.3:52036957-52036976 | MS.gene036223:CDS | 35.0% | |
| TGCTGTGCAAATTTATGCTA+AGG | + | chr1.3:52035763-52035782 | MS.gene036223:CDS | 35.0% | |
| TGGACTTCTTAACAAAGATG+AGG | + | chr1.3:52035652-52035671 | MS.gene036223:CDS | 35.0% | |
| ! | ATTCCTTCAAAGCATTAGCA+AGG | - | chr1.3:52036636-52036655 | None:intergenic | 35.0% |
| ! | GAACACTTTCAATCAAGTTG+TGG | + | chr1.3:52035546-52035565 | MS.gene036223:CDS | 35.0% |
| ! | GATCTGTCAGATTTTATTGC+TGG | + | chr1.3:52036073-52036092 | MS.gene036223:CDS | 35.0% |
| ! | GTCACTGGAAATTTTGGATA+TGG | + | chr1.3:52036663-52036682 | MS.gene036223:CDS | 35.0% |
| ! | TGGAAATTTTGGATATGGCT+GGG | + | chr1.3:52036668-52036687 | MS.gene036223:CDS | 35.0% |
| ! | TTCCTTCAAAGCATTAGCAA+GGG | - | chr1.3:52036635-52036654 | None:intergenic | 35.0% |
| !! | AGAACTTCTGAAACCATTGA+TGG | + | chr1.3:52035940-52035959 | MS.gene036223:CDS | 35.0% |
| !! | CGGATAAATTTAACTTGGTG+AGG | - | chr1.3:52036753-52036772 | None:intergenic | 35.0% |
| !! | GAACTTCTGAAACCATTGAT+GGG | + | chr1.3:52035941-52035960 | MS.gene036223:CDS | 35.0% |
| !! | TGATTGAAAGTGTTCGATGT+TGG | - | chr1.3:52035541-52035560 | None:intergenic | 35.0% |
| !! | TTTTGAAAAGAGGACCAAGA+GGG | + | chr1.3:52035810-52035829 | MS.gene036223:CDS | 35.0% |
| !!! | ACTGTTTTTGACATTTCTGG+GGG | + | chr1.3:52035884-52035903 | MS.gene036223:CDS | 35.0% |
| !!! | ATGTTGGAGGTTTTGAAAAG+AGG | + | chr1.3:52035800-52035819 | MS.gene036223:CDS | 35.0% |
| AAAGAGTTTGGTCCCATCAA+TGG | - | chr1.3:52035956-52035975 | None:intergenic | 40.0% | |
| AAGAACCTTAAGCTTCTCAG+TGG | - | chr1.3:52036320-52036339 | None:intergenic | 40.0% | |
| AATAACATGACTGGAGACGA+AGG | + | chr1.3:52036349-52036368 | MS.gene036223:CDS | 40.0% | |
| ACCGAAAATCTTCCAAAGCT+GGG | - | chr1.3:52036408-52036427 | None:intergenic | 40.0% | |
| ACTTCAATAGCTTCTGCTTC+TGG | - | chr1.3:52036103-52036122 | None:intergenic | 40.0% | |
| AGAAAATAGACGGAGTAGTC+AGG | - | chr1.3:52035622-52035641 | None:intergenic | 40.0% | |
| AGGTTTAATTAGTAAGGCGC+TGG | + | chr1.3:52036798-52036817 | MS.gene036223:CDS | 40.0% | |
| ATAATGCCATGGGTGAAAAG+GGG | + | chr1.3:52036182-52036201 | MS.gene036223:CDS | 40.0% | |
| ATCAACCTAGTACTCTGACT+TGG | - | chr1.3:52035575-52035594 | None:intergenic | 40.0% | |
| ATCGAGTAAGCTTATGTTGG+AGG | + | chr1.3:52035787-52035806 | MS.gene036223:CDS | 40.0% | |
| CCCTTCATCAGAAATGAAGT+TGG | - | chr1.3:52036944-52036963 | None:intergenic | 40.0% | |
| CGTCTCCAGTCATGTTATTA+TGG | - | chr1.3:52036348-52036367 | None:intergenic | 40.0% | |
| GAAGGATGCAAAGGAAATTG+AGG | + | chr1.3:52035679-52035698 | MS.gene036223:CDS | 40.0% | |
| GATTTGCGTGACAACATGTT+TGG | + | chr1.3:52036508-52036527 | MS.gene036223:CDS | 40.0% | |
| GCAACTTAAATCCAGGTTTC+TGG | - | chr1.3:52036909-52036928 | None:intergenic | 40.0% | |
| GCCAACTTCATTTCTGATGA+AGG | + | chr1.3:52036940-52036959 | MS.gene036223:CDS | 40.0% | |
| GGAATCGAGTAAGCTTATGT+TGG | + | chr1.3:52035784-52035803 | MS.gene036223:CDS | 40.0% | |
| TAACAAAGATGAGGCTGAGA+AGG | + | chr1.3:52035661-52035680 | MS.gene036223:CDS | 40.0% | |
| TCAGGATCATTCTCATCCAA+AGG | - | chr1.3:52037015-52037034 | None:intergenic | 40.0% | |
| TTGGATGAGAATGATCCTGA+AGG | + | chr1.3:52037015-52037034 | MS.gene036223:CDS | 40.0% | |
| ! | CTGGAAATTTTGGATATGGC+TGG | + | chr1.3:52036667-52036686 | MS.gene036223:CDS | 40.0% |
| ! | GAATTGAAAGATGAAGGTGC+AGG | + | chr1.3:52036778-52036797 | MS.gene036223:CDS | 40.0% |
| ! | GTCGCAGAGCTTTTATTGAT+GGG | + | chr1.3:52035906-52035925 | MS.gene036223:CDS | 40.0% |
| ! | TCGCAGAGCTTTTATTGATG+GGG | + | chr1.3:52035907-52035926 | MS.gene036223:CDS | 40.0% |
| !! | GGGGAGTTGATATCTGAAAA+GGG | + | chr1.3:52035845-52035864 | MS.gene036223:CDS | 40.0% |
| !! | TGGGGAGTTGATATCTGAAA+AGG | + | chr1.3:52035844-52035863 | MS.gene036223:CDS | 40.0% |
| !! | TTAATTAGTAAGGCGCTGGA+AGG | + | chr1.3:52036802-52036821 | MS.gene036223:CDS | 40.0% |
| !! | TTTGTGATTTAAGGAGTGCC+CGG | - | chr1.3:52036219-52036238 | None:intergenic | 40.0% |
| !!! | GTTTTGAAAAGAGGACCAAG+AGG | + | chr1.3:52035809-52035828 | MS.gene036223:CDS | 40.0% |
| ACCTTAAGCTTCTCAGTGGA+AGG | - | chr1.3:52036316-52036335 | None:intergenic | 45.0% | |
| AGCCCTTGCTAATGCTTTGA+AGG | + | chr1.3:52036630-52036649 | MS.gene036223:CDS | 45.0% | |
| AGTGTTCGATGTTGGTACGA+CGG | - | chr1.3:52035533-52035552 | None:intergenic | 45.0% | |
| CACCCATGGCATTATTTGAC+AGG | - | chr1.3:52036177-52036196 | None:intergenic | 45.0% | |
| CACCGAAAATCTTCCAAAGC+TGG | - | chr1.3:52036409-52036428 | None:intergenic | 45.0% | |
| CCGAAAATCTTCCAAAGCTG+GGG | - | chr1.3:52036407-52036426 | None:intergenic | 45.0% | |
| CCTTAAGCTTCTCAGTGGAA+GGG | - | chr1.3:52036315-52036334 | None:intergenic | 45.0% | |
| TAATGCCATGGGTGAAAAGG+GGG | + | chr1.3:52036183-52036202 | MS.gene036223:CDS | 45.0% | |
| TGAGAATGATCCTGAAGGAG+AGG | + | chr1.3:52037020-52037039 | MS.gene036223:CDS | 45.0% | |
| ! | AAAAGGAGCCTGATGGTGAT+GGG | + | chr1.3:52035735-52035754 | MS.gene036223:CDS | 45.0% |
| ! | AAAAGGGGGTTAGAGCATTC+CGG | + | chr1.3:52036197-52036216 | MS.gene036223:CDS | 45.0% |
| ! | CACTTTGAAAAGGAGCCTGA+TGG | + | chr1.3:52035728-52035747 | MS.gene036223:CDS | 45.0% |
| ! | CAGAGCTTTTATTGATGGGG+AGG | + | chr1.3:52035910-52035929 | MS.gene036223:CDS | 45.0% |
| ! | GGTCGCAGAGCTTTTATTGA+TGG | + | chr1.3:52035905-52035924 | MS.gene036223:CDS | 45.0% |
| ! | TGCACCGTCACTGGAAATTT+TGG | + | chr1.3:52036657-52036676 | MS.gene036223:CDS | 45.0% |
| !! | AACATGTTTGGTGTGGAAGC+TGG | + | chr1.3:52036520-52036539 | MS.gene036223:CDS | 45.0% |
| !! | AACCTAGTACTCTGACTTGG+AGG | - | chr1.3:52035572-52035591 | None:intergenic | 45.0% |
| !! | AGGCTCCTTTTCAAAGTGCT+GGG | - | chr1.3:52035726-52035745 | None:intergenic | 45.0% |
| !!! | CCCCAGCTTTGGAAGATTTT+CGG | + | chr1.3:52036404-52036423 | MS.gene036223:CDS | 45.0% |
| AACAGCTTCTGCCAACAGCT+TGG | - | chr1.3:52036884-52036903 | None:intergenic | 50.0% | |
| AAGAGGGAAGGAGGAGAATG+GGG | + | chr1.3:52035826-52035845 | MS.gene036223:CDS | 50.0% | |
| ACCTGACATACTGGGTCCTT+TGG | + | chr1.3:52036996-52037015 | MS.gene036223:CDS | 50.0% | |
| CAAGAGGGAAGGAGGAGAAT+GGG | + | chr1.3:52035825-52035844 | MS.gene036223:CDS | 50.0% | |
| CCCTTCCACTGAGAAGCTTA+AGG | + | chr1.3:52036312-52036331 | MS.gene036223:CDS | 50.0% | |
| CGGTGTTCATCTACCAGAGT+AGG | + | chr1.3:52036424-52036443 | MS.gene036223:CDS | 50.0% | |
| GAAAAGAGGACCAAGAGGGA+AGG | + | chr1.3:52035814-52035833 | MS.gene036223:CDS | 50.0% | |
| GAAGCTGTTGTCCAGAAACC+TGG | + | chr1.3:52036895-52036914 | MS.gene036223:CDS | 50.0% | |
| TCATCAACGTCCTCTCCTTC+AGG | - | chr1.3:52037033-52037052 | None:intergenic | 50.0% | |
| TCCAAAGGACCCAGTATGTC+AGG | - | chr1.3:52037000-52037019 | None:intergenic | 50.0% | |
| TGAGGCTGAGAAGGATGCAA+AGG | + | chr1.3:52035670-52035689 | MS.gene036223:CDS | 50.0% | |
| TGTGAAACGTTCCCCAGCTT+TGG | + | chr1.3:52036393-52036412 | MS.gene036223:CDS | 50.0% | |
| ! | AAAGGGGGTTAGAGCATTCC+GGG | + | chr1.3:52036198-52036217 | MS.gene036223:CDS | 50.0% |
| ! | AGGAGAGGACGTTGATGAAG+AGG | + | chr1.3:52037035-52037054 | MS.gene036223:CDS | 50.0% |
| ! | CAGGCTCCTTTTCAAAGTGC+TGG | - | chr1.3:52035727-52035746 | None:intergenic | 50.0% |
| ! | GAAAAGGAGCCTGATGGTGA+TGG | + | chr1.3:52035734-52035753 | MS.gene036223:CDS | 50.0% |
| ! | GCGTGACAACATGTTTGGTG+TGG | + | chr1.3:52036513-52036532 | MS.gene036223:CDS | 50.0% |
| ! | TCTAACCCCCTTTTCACCCA+TGG | - | chr1.3:52036191-52036210 | None:intergenic | 50.0% |
| ! | TCTACCAGAGTAGGCTCTGA+AGG | + | chr1.3:52036433-52036452 | MS.gene036223:CDS | 50.0% |
| ! | TGCGACCCAGCACTTTGAAA+AGG | + | chr1.3:52035718-52035737 | MS.gene036223:CDS | 50.0% |
| ! | TTGCTCTTGCTGAAGCGCTT+GGG | + | chr1.3:52036461-52036480 | MS.gene036223:CDS | 50.0% |
| AAGAGGACCAAGAGGGAAGG+AGG | + | chr1.3:52035817-52035836 | MS.gene036223:CDS | 55.0% | |
| ACCACCTTCAGAGCCTACTC+TGG | - | chr1.3:52036440-52036459 | None:intergenic | 55.0% | |
| CCAAGAGGGAAGGAGGAGAA+TGG | + | chr1.3:52035824-52035843 | MS.gene036223:CDS | 55.0% | |
| CCATTCTCCTCCTTCCCTCT+TGG | - | chr1.3:52035827-52035846 | None:intergenic | 55.0% | |
| GAAGGAATCTGCACCGTCAC+TGG | + | chr1.3:52036648-52036667 | MS.gene036223:CDS | 55.0% | |
| GCAGAACTCCCATCACCATC+AGG | - | chr1.3:52035746-52035765 | None:intergenic | 55.0% | |
| ! | ATGGTCTGGAGCCAAGCTGT+TGG | + | chr1.3:52036870-52036889 | MS.gene036223:CDS | 55.0% |
| ! | GGCCTCCAAGTCAGAGTACT+AGG | + | chr1.3:52035567-52035586 | MS.gene036223:CDS | 55.0% |
| ! | GTTGCTCTTGCTGAAGCGCT+TGG | + | chr1.3:52036460-52036479 | MS.gene036223:CDS | 55.0% |
| ! | TGCTCTTGCTGAAGCGCTTG+GGG | + | chr1.3:52036462-52036481 | MS.gene036223:CDS | 55.0% |
| !! | ACCAGAGTAGGCTCTGAAGG+TGG | + | chr1.3:52036436-52036455 | MS.gene036223:CDS | 55.0% |
| !! | AGTAAGGCGCTGGAAGGTCG+TGG | + | chr1.3:52036808-52036827 | MS.gene036223:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.3 | gene | 52035515 | 52037116 | 52035515 | ID=MS.gene036223 |
| chr1.3 | mRNA | 52035515 | 52037116 | 52035515 | ID=MS.gene036223.t1;Parent=MS.gene036223 |
| chr1.3 | exon | 52035515 | 52037116 | 52035515 | ID=MS.gene036223.t1.exon1;Parent=MS.gene036223.t1 |
| chr1.3 | CDS | 52035515 | 52037116 | 52035515 | ID=cds.MS.gene036223.t1;Parent=MS.gene036223.t1 |
| Gene Sequence |
| Protein sequence |
