Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene034736.t1 | XP_003590329.1 | 94.9 | 293 | 13 | 1 | 1 | 293 | 1 | 291 | 9.50E-148 | 533.1 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene034736.t1 | Q9ZSD4 | 71.1 | 291 | 81 | 1 | 1 | 291 | 1 | 288 | 6.7e-110 | 398.7 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene034736.t1 | G7I8J4 | 94.9 | 293 | 13 | 1 | 1 | 293 | 1 | 291 | 6.8e-148 | 533.1 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene034736 | MS.gene55383 | PPI |
| MS.gene034736 | MS.gene99692 | PPI |
| MS.gene034736 | MS.gene53170 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene034736.t1 | MTR_1g056560 | 97.067 | 341 | 8 | 1 | 1 | 341 | 1 | 339 | 0.0 | 683 |
| MS.gene034736.t1 | MTR_1g056550 | 68.259 | 293 | 83 | 4 | 1 | 291 | 1 | 285 | 1.25e-144 | 410 |
| MS.gene034736.t1 | MTR_2g012270 | 56.536 | 306 | 119 | 2 | 1 | 306 | 1 | 292 | 2.10e-126 | 364 |
| MS.gene034736.t1 | MTR_4g090900 | 58.644 | 295 | 105 | 2 | 1 | 293 | 1 | 280 | 3.30e-124 | 359 |
| MS.gene034736.t1 | MTR_7g106420 | 56.314 | 293 | 109 | 2 | 1 | 293 | 1 | 274 | 1.22e-116 | 339 |
| MS.gene034736.t1 | MTR_5g012010 | 48.583 | 247 | 126 | 1 | 46 | 291 | 50 | 296 | 1.20e-83 | 256 |
| MS.gene034736.t1 | MTR_2g088700 | 42.173 | 313 | 173 | 3 | 1 | 313 | 1 | 305 | 2.40e-80 | 247 |
| MS.gene034736.t1 | MTR_6g028140 | 44.127 | 315 | 157 | 2 | 1 | 312 | 1 | 299 | 7.54e-79 | 243 |
| MS.gene034736.t1 | MTR_2g088700 | 43.770 | 313 | 168 | 3 | 1 | 313 | 1 | 305 | 3.38e-75 | 234 |
| MS.gene034736.t1 | MTR_5g020670 | 41.129 | 248 | 136 | 2 | 46 | 292 | 40 | 278 | 4.92e-60 | 195 |
| MS.gene034736.t1 | MTR_8g073900 | 34.109 | 129 | 63 | 1 | 46 | 174 | 40 | 146 | 1.24e-14 | 70.9 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene034736.t1 | AT3G11820 | 69.836 | 305 | 83 | 2 | 39 | 335 | 5 | 308 | 9.18e-144 | 409 |
| MS.gene034736.t1 | AT3G11820 | 67.246 | 345 | 97 | 4 | 1 | 335 | 1 | 339 | 1.01e-143 | 410 |
| MS.gene034736.t1 | AT1G61290 | 57.516 | 306 | 116 | 3 | 1 | 306 | 1 | 292 | 2.76e-127 | 367 |
| MS.gene034736.t1 | AT1G61290 | 57.516 | 306 | 116 | 3 | 1 | 306 | 1 | 292 | 2.76e-127 | 367 |
| MS.gene034736.t1 | AT3G52400 | 62.222 | 315 | 115 | 2 | 1 | 315 | 1 | 311 | 1.12e-124 | 362 |
| MS.gene034736.t1 | AT1G11250 | 59.386 | 293 | 100 | 2 | 1 | 293 | 1 | 274 | 4.59e-124 | 358 |
| MS.gene034736.t1 | AT4G03330 | 57.388 | 291 | 113 | 2 | 1 | 291 | 1 | 280 | 3.25e-117 | 341 |
| MS.gene034736.t1 | AT3G03800 | 44.904 | 314 | 157 | 2 | 1 | 312 | 1 | 300 | 8.99e-81 | 248 |
| MS.gene034736.t1 | AT3G03800 | 44.904 | 314 | 157 | 2 | 1 | 312 | 1 | 300 | 8.99e-81 | 248 |
| MS.gene034736.t1 | AT1G08560 | 42.177 | 294 | 159 | 4 | 1 | 291 | 1 | 286 | 2.92e-76 | 237 |
| MS.gene034736.t1 | AT5G08080 | 45.223 | 314 | 159 | 2 | 1 | 314 | 1 | 301 | 3.16e-71 | 224 |
| MS.gene034736.t1 | AT5G08080 | 45.223 | 314 | 159 | 2 | 1 | 314 | 1 | 301 | 3.16e-71 | 224 |
| MS.gene034736.t1 | AT5G08080 | 43.692 | 325 | 159 | 4 | 1 | 314 | 1 | 312 | 4.81e-69 | 219 |
| MS.gene034736.t1 | AT2G18260 | 39.773 | 264 | 152 | 2 | 46 | 309 | 46 | 302 | 2.19e-60 | 196 |
| MS.gene034736.t1 | AT2G18260 | 39.773 | 264 | 152 | 2 | 46 | 309 | 46 | 302 | 2.19e-60 | 196 |
| MS.gene034736.t1 | AT5G08080 | 40.376 | 213 | 114 | 2 | 1 | 213 | 1 | 200 | 4.61e-34 | 125 |
| MS.gene034736.t1 | AT5G08080 | 40.376 | 213 | 114 | 2 | 1 | 213 | 1 | 200 | 4.61e-34 | 125 |
Find 105 sgRNAs with CRISPR-Local
Find 170 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCCTGCTCCGGCTCCGGTTC+TGG | 0.233125 | 1.2:+44581144 | None:intergenic |
| CCCGTCACCTCCTCCTCCTT+CGG | 0.261959 | 1.2:-44579079 | MS.gene034736:CDS |
| CCTCTCTTGAATTTCATTGA+TGG | 0.265261 | 1.2:+44579425 | None:intergenic |
| AGTTTCTGTGGCGTTGAAAA+AGG | 0.271121 | 1.2:-44580957 | MS.gene034736:CDS |
| TAATGCAGCGAACCGGAATT+TGG | 0.272373 | 1.2:-44580894 | MS.gene034736:CDS |
| ACAAGGCAGGGGAAGAATTC+TGG | 0.274465 | 1.2:-44579451 | MS.gene034736:CDS |
| GAAGAAGTTGAAGGATTCTA+TGG | 0.286048 | 1.2:-44580810 | MS.gene034736:CDS |
| TCCATTTCCTTGTGTTTCTC+TGG | 0.322362 | 1.2:+44579226 | None:intergenic |
| TTTAGCATCGTGAACCGTTT+TGG | 0.332874 | 1.2:+44581015 | None:intergenic |
| CCGTCACCTCCTCCTCCTTC+GGG | 0.338871 | 1.2:-44579078 | MS.gene034736:CDS |
| GTCCACATCCTTCCAAATTC+CGG | 0.344060 | 1.2:+44580882 | None:intergenic |
| TAGAAGTATAATACAATAAC+AGG | 0.363828 | 1.2:+44579203 | None:intergenic |
| TTGAATTGCTTTCTGAAGAA+AGG | 0.380131 | 1.2:+44579476 | None:intergenic |
| CCGAAGGAGGAGGAGGTGAC+GGG | 0.392162 | 1.2:+44579079 | None:intergenic |
| GCCAGAACCGGAGCCGGAGC+AGG | 0.395459 | 1.2:-44581145 | MS.gene034736:CDS |
| ACAGTTTCAAGGTGAGCAAT+TGG | 0.421621 | 1.2:-44579328 | MS.gene034736:CDS |
| GCCGGTGCCGGAGCCAGAAC+CGG | 0.424735 | 1.2:-44581157 | MS.gene034736:CDS |
| TCTACCTCCTGCTCCGGCTC+CGG | 0.444894 | 1.2:+44581138 | None:intergenic |
| CCTTGCAGTTTGTAACTGTT+CGG | 0.445129 | 1.2:+44579254 | None:intergenic |
| CCCGAAGGAGGAGGAGGTGA+CGG | 0.445219 | 1.2:+44579078 | None:intergenic |
| TCCGGTTCTGGCTCCGGCAC+CGG | 0.450555 | 1.2:+44581156 | None:intergenic |
| AATGATAGTGGAGGCGGTGG+GGG | 0.457534 | 1.2:-44579129 | MS.gene034736:CDS |
| ACCAGAGAAACACAAGGAAA+TGG | 0.460665 | 1.2:-44579227 | MS.gene034736:CDS |
| GTCGGACCGGACGAGGAGTT+CGG | 0.470451 | 1.2:-44580849 | MS.gene034736:CDS |
| AAAAGACGATTTAAAAGAGC+TGG | 0.472574 | 1.2:-44581077 | MS.gene034736:CDS |
| CCATGGCAACATAATGATAG+TGG | 0.472933 | 1.2:-44579141 | MS.gene034736:CDS |
| CATAATGATAGTGGAGGCGG+TGG | 0.476400 | 1.2:-44579132 | MS.gene034736:CDS |
| CTTGATCTATTGATCTCTAC+TGG | 0.477120 | 1.2:-44580686 | MS.gene034736:intron |
| CCACTATCATTATGTTGCCA+TGG | 0.481591 | 1.2:+44579141 | None:intergenic |
| ACGAGGAGTTCGGTGGTGAA+TGG | 0.482620 | 1.2:-44580839 | MS.gene034736:CDS |
| AAGCAATTCAAGAACAAGGC+AGG | 0.485542 | 1.2:-44579464 | MS.gene034736:CDS |
| ACAGTTATGGTACAGTTTCA+AGG | 0.486936 | 1.2:-44579339 | MS.gene034736:CDS |
| TCCGGCTCCGGTTCTGGCTC+CGG | 0.487014 | 1.2:+44581150 | None:intergenic |
| GCCGGAGCCAGAACCGGAGC+CGG | 0.488959 | 1.2:-44581151 | MS.gene034736:CDS |
| CGAAGGAGGAGGAGGTGACG+GGG | 0.489563 | 1.2:+44579080 | None:intergenic |
| TCGATGACGTGGTGCCGGTC+CGG | 0.492087 | 1.2:+44581193 | None:intergenic |
| GACCGGGTTCGTCGTCGGAC+CGG | 0.493595 | 1.2:-44580862 | MS.gene034736:CDS |
| TCGTAATAACTTCCCGCAAA+CGG | 0.494632 | 1.2:+44580777 | None:intergenic |
| CGTTAGTCTTAGAAAGTCGT+TGG | 0.499008 | 1.2:+44581044 | None:intergenic |
| ATGACAGACGGTGCCGGTGC+CGG | 0.503950 | 1.2:-44581169 | MS.gene034736:CDS |
| GTTTATTCTACCTCCTGCTC+CGG | 0.505856 | 1.2:+44581132 | None:intergenic |
| TCATCTCGATGACGTGGTGC+CGG | 0.507346 | 1.2:+44581188 | None:intergenic |
| GTCCGGTCCGACGACGAACC+CGG | 0.508930 | 1.2:+44580860 | None:intergenic |
| TGGTTTGAAGAAGAAGTTGA+AGG | 0.509767 | 1.2:-44580819 | MS.gene034736:CDS |
| AGATCAAGAGTCTTATCATC+AGG | 0.511696 | 1.2:+44580701 | None:intergenic |
| GAATTTGGAAGGATGTGGAC+CGG | 0.521500 | 1.2:-44580879 | MS.gene034736:CDS |
| CTTGATCGTGGTTCTTGCCA+CGG | 0.525394 | 1.2:-44579169 | MS.gene034736:CDS |
| AGAACCGGAGCCGGAGCAGG+AGG | 0.526171 | 1.2:-44581142 | MS.gene034736:CDS |
| GTTCCTCGACATGACAGTTA+TGG | 0.527074 | 1.2:-44579352 | MS.gene034736:CDS |
| CTGTCATGTCGAGGAACACT+TGG | 0.530452 | 1.2:+44579358 | None:intergenic |
| AAAGATCTAATGCAGCGAAC+CGG | 0.530927 | 1.2:-44580901 | MS.gene034736:CDS |
| GTTCGTCGTCGGACCGGACG+AGG | 0.534035 | 1.2:-44580856 | MS.gene034736:CDS |
| GACTAACGAACAAACCAAAA+CGG | 0.539854 | 1.2:-44581029 | MS.gene034736:CDS |
| GAAGCTGAAGCTGGAGGCGT+TGG | 0.540329 | 1.2:-44580924 | MS.gene034736:CDS |
| TAGTCTTAGAAAGTCGTTGG+TGG | 0.541554 | 1.2:+44581047 | None:intergenic |
| TCACCACCGAACTCCTCGTC+CGG | 0.541854 | 1.2:+44580843 | None:intergenic |
| GAAGGAGCTTCGTTCACGTA+TGG | 0.543242 | 1.2:-44580987 | MS.gene034736:CDS |
| GAAGATGGTGAAGCTGAAGC+TGG | 0.544305 | 1.2:-44580933 | MS.gene034736:CDS |
| GCATGACGCTGTCAAAGACT+TGG | 0.549313 | 1.2:-44579403 | MS.gene034736:CDS |
| TAATGATAGTGGAGGCGGTG+GGG | 0.551632 | 1.2:-44579130 | MS.gene034736:CDS |
| AACCGGAATTTGGAAGGATG+TGG | 0.553790 | 1.2:-44580884 | MS.gene034736:CDS |
| ACGAGCTCGCCCTCGCCACA+TGG | 0.555170 | 1.2:+44579292 | None:intergenic |
| GTGAAGAAGTTTCACCGGAC+CGG | 0.559293 | 1.2:-44581207 | MS.gene034736:CDS |
| TAAGTACCACCCGAAGGAGG+AGG | 0.565613 | 1.2:+44579069 | None:intergenic |
| AGACTTGGAGAAGAGTCTAC+TGG | 0.566833 | 1.2:-44579388 | MS.gene034736:CDS |
| GTACCACCCGAAGGAGGAGG+AGG | 0.568216 | 1.2:+44579072 | None:intergenic |
| ATTGATCATTGTCTTGATCG+TGG | 0.570829 | 1.2:-44579181 | MS.gene034736:CDS |
| AATTTGGAAGGATGTGGACC+GGG | 0.572538 | 1.2:-44580878 | MS.gene034736:CDS |
| AGCAATTCAAGAACAAGGCA+GGG | 0.573394 | 1.2:-44579463 | MS.gene034736:CDS |
| CAGAAAGCAATTCAAGAACA+AGG | 0.578887 | 1.2:-44579468 | MS.gene034736:CDS |
| CAACATAATGATAGTGGAGG+CGG | 0.579137 | 1.2:-44579135 | MS.gene034736:CDS |
| ATGTGGACCGGGTTCGTCGT+CGG | 0.579640 | 1.2:-44580867 | MS.gene034736:CDS |
| AAAACGGTTCACGATGCTAA+AGG | 0.580222 | 1.2:-44581013 | MS.gene034736:CDS |
| CCGTAGTGAAGAAGTTTCAC+CGG | 0.580387 | 1.2:-44581212 | MS.gene034736:CDS |
| ATCGAGATGACAGACGGTGC+CGG | 0.580893 | 1.2:-44581175 | MS.gene034736:CDS |
| AAATTCTTCGACGACGTCGA+AGG | 0.582409 | 1.2:-44581103 | MS.gene034736:CDS |
| ATAATGATAGTGGAGGCGGT+GGG | 0.590164 | 1.2:-44579131 | MS.gene034736:CDS |
| GCAGCGAACCGGAATTTGGA+AGG | 0.594827 | 1.2:-44580890 | MS.gene034736:CDS |
| GCAATTCAAGAACAAGGCAG+GGG | 0.612361 | 1.2:-44579462 | MS.gene034736:CDS |
| TATCGAGAGCCATGTGGCGA+GGG | 0.613532 | 1.2:-44579301 | MS.gene034736:CDS |
| TCACGATGCTAAAGGAGTGA+AGG | 0.617381 | 1.2:-44581005 | MS.gene034736:CDS |
| GAAGGAGGAGGAGGTGACGG+GGG | 0.620690 | 1.2:+44579081 | None:intergenic |
| GCGAGCTCGTTTGTGCACAC+TGG | 0.621398 | 1.2:-44579279 | MS.gene034736:CDS |
| CGTCGTCGAAGAATTTGTCG+AGG | 0.622912 | 1.2:+44581110 | None:intergenic |
| ATATCGAGAGCCATGTGGCG+AGG | 0.623389 | 1.2:-44579302 | MS.gene034736:CDS |
| TTCTTGCCACGGTGAAACCA+TGG | 0.631742 | 1.2:-44579158 | MS.gene034736:CDS |
| GATGGTGAAGCTGAAGCTGG+AGG | 0.632553 | 1.2:-44580930 | MS.gene034736:CDS |
| AAAATGAACAACTTATTCAG+CGG | 0.633088 | 1.2:-44581250 | MS.gene034736:CDS |
| TCACCTCCTCCTCCTTCGGG+TGG | 0.636070 | 1.2:-44579075 | MS.gene034736:CDS |
| TATGGACGAAGAAGTTTCTG+TGG | 0.652355 | 1.2:-44580969 | MS.gene034736:CDS |
| CGTCTGTCATCTCGATGACG+TGG | 0.652928 | 1.2:+44581182 | None:intergenic |
| CCGAACAGTTACAAACTGCA+AGG | 0.655391 | 1.2:-44579254 | MS.gene034736:CDS |
| GATTAAGTACCACCCGAAGG+AGG | 0.656702 | 1.2:+44579066 | None:intergenic |
| CCGGTGAAACTTCTTCACTA+CGG | 0.658758 | 1.2:+44581212 | None:intergenic |
| CACGTCATCGAGATGACAGA+CGG | 0.659715 | 1.2:-44581181 | MS.gene034736:CDS |
| GTACCATAACTGTCATGTCG+AGG | 0.662556 | 1.2:+44579349 | None:intergenic |
| CCATCAATGAAATTCAAGAG+AGG | 0.665676 | 1.2:-44579425 | MS.gene034736:CDS |
| TGGCAACATAATGATAGTGG+AGG | 0.674274 | 1.2:-44579138 | MS.gene034736:CDS |
| GGACCGGACGAGGAGTTCGG+TGG | 0.678230 | 1.2:-44580846 | MS.gene034736:CDS |
| TAAGATTAAGTACCACCCGA+AGG | 0.686561 | 1.2:+44579063 | None:intergenic |
| GGAAGCACCAGAGAAACACA+AGG | 0.690964 | 1.2:-44579233 | MS.gene034736:CDS |
| TTTGCGGGAAGTTATTACGA+CGG | 0.707869 | 1.2:-44580774 | MS.gene034736:CDS |
| AGTATAGAGAGACTGTTCAA+CGG | 0.733726 | 1.2:-44580751 | MS.gene034736:CDS |
| GGATGATATCGAGAGCCATG+TGG | 0.741101 | 1.2:-44579307 | MS.gene034736:CDS |
| ATGTTGCCATGGTTTCACCG+TGG | 0.746888 | 1.2:+44579152 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TTTGATAAAAATTTATTAGT+AGG | - | chr1.2:44579783-44579802 | MS.gene034736:intron | 10.0% |
| !! | AAATTTATTAGTAGGTTAAT+TGG | - | chr1.2:44579791-44579810 | MS.gene034736:intron | 15.0% |
| !!! | GTATGAATGTTTTAAAATCT+AGG | - | chr1.2:44579725-44579744 | MS.gene034736:intron | 20.0% |
| !!! | TAGAAGTATAATACAATAAC+AGG | + | chr1.2:44581115-44581134 | None:intergenic | 20.0% |
| !!! | TTAAAGATAACTTGTTTGTT+GGG | - | chr1.2:44580708-44580727 | MS.gene034736:CDS | 20.0% |
| !!! | TTAATTGGTGTTTTAGATTA+TGG | - | chr1.2:44579806-44579825 | MS.gene034736:intron | 20.0% |
| !!! | TTTAAAGATAACTTGTTTGT+TGG | - | chr1.2:44580707-44580726 | MS.gene034736:CDS | 20.0% |
| !!! | TTTGTCTTTTAATTAAGTTC+AGG | - | chr1.2:44580755-44580774 | MS.gene034736:CDS | 20.0% |
| ! | GAATGAAAAATAAACTGAAC+TGG | - | chr1.2:44579877-44579896 | MS.gene034736:intron | 25.0% |
| ! | TCAGTTACATGAATTGAATA+CGG | + | chr1.2:44580120-44580139 | None:intergenic | 25.0% |
| !! | TAGATTATGGATTATGTACT+AGG | - | chr1.2:44579819-44579838 | MS.gene034736:intron | 25.0% |
| AAAAGACGATTTAAAAGAGC+TGG | - | chr1.2:44579238-44579257 | MS.gene034736:CDS | 30.0% | |
| TGAAAAATAAACTGAACTGG+TGG | - | chr1.2:44579880-44579899 | MS.gene034736:intron | 30.0% | |
| TGTCAACATGTCAGTATTTA+TGG | - | chr1.2:44580094-44580113 | MS.gene034736:intron | 30.0% | |
| ! | TTGAATTGCTTTCTGAAGAA+AGG | + | chr1.2:44580842-44580861 | None:intergenic | 30.0% |
| AAATACTGACATGTTGACAC+TGG | + | chr1.2:44580093-44580112 | None:intergenic | 35.0% | |
| ACAGTTATGGTACAGTTTCA+AGG | - | chr1.2:44580976-44580995 | MS.gene034736:CDS | 35.0% | |
| AGATAGTTCAGTTCAGACTT+TGG | + | chr1.2:44580394-44580413 | None:intergenic | 35.0% | |
| AGTATAGAGAGACTGTTCAA+CGG | - | chr1.2:44579564-44579583 | MS.gene034736:intron | 35.0% | |
| ATCCAAGGAATCTAACTACA+TGG | + | chr1.2:44580280-44580299 | None:intergenic | 35.0% | |
| ATTGATCATTGTCTTGATCG+TGG | - | chr1.2:44581134-44581153 | MS.gene034736:CDS | 35.0% | |
| CAGAAAGCAATTCAAGAACA+AGG | - | chr1.2:44580847-44580866 | MS.gene034736:CDS | 35.0% | |
| CCATCAATGAAATTCAAGAG+AGG | - | chr1.2:44580890-44580909 | MS.gene034736:CDS | 35.0% | |
| CCTCTCTTGAATTTCATTGA+TGG | + | chr1.2:44580893-44580912 | None:intergenic | 35.0% | |
| CTTGATCTATTGATCTCTAC+TGG | - | chr1.2:44579629-44579648 | MS.gene034736:intron | 35.0% | |
| GAACAAAACTGAATGTCAAC+CGG | + | chr1.2:44580054-44580073 | None:intergenic | 35.0% | |
| GAAGAAGTTGAAGGATTCTA+TGG | - | chr1.2:44579505-44579524 | MS.gene034736:intron | 35.0% | |
| GACTAACGAACAAACCAAAA+CGG | - | chr1.2:44579286-44579305 | MS.gene034736:CDS | 35.0% | |
| GATAGTTCAGTTCAGACTTT+GGG | + | chr1.2:44580393-44580412 | None:intergenic | 35.0% | |
| GCATCAACACTTCTAATCAA+AGG | - | chr1.2:44579993-44580012 | MS.gene034736:intron | 35.0% | |
| TGGTTTGAAGAAGAAGTTGA+AGG | - | chr1.2:44579496-44579515 | MS.gene034736:intron | 35.0% | |
| TTACTAGTAACCTCACACTA+AGG | + | chr1.2:44579960-44579979 | None:intergenic | 35.0% | |
| TTCCATGTAGTTAGATTCCT+TGG | - | chr1.2:44580275-44580294 | MS.gene034736:intron | 35.0% | |
| TTGGTATAGAACTACAAGTG+AGG | - | chr1.2:44579915-44579934 | MS.gene034736:intron | 35.0% | |
| ! | AAACAAATTCTCTAGAAGCC+AGG | + | chr1.2:44580459-44580478 | None:intergenic | 35.0% |
| ! | AGATCAAGAGTCTTATCATC+AGG | + | chr1.2:44579617-44579636 | None:intergenic | 35.0% |
| !! | AGATAACTTGTTTGTTGGGT+TGG | - | chr1.2:44580712-44580731 | MS.gene034736:CDS | 35.0% |
| AAAACGGTTCACGATGCTAA+AGG | - | chr1.2:44579302-44579321 | MS.gene034736:CDS | 40.0% | |
| AAACTGAACTGGTGGAGAAT+TGG | - | chr1.2:44579888-44579907 | MS.gene034736:intron | 40.0% | |
| AAAGATCTAATGCAGCGAAC+CGG | - | chr1.2:44579414-44579433 | MS.gene034736:CDS | 40.0% | |
| AAGATTCTCCACCATCAATG+AGG | + | chr1.2:44580591-44580610 | None:intergenic | 40.0% | |
| AAGCAATTCAAGAACAAGGC+AGG | - | chr1.2:44580851-44580870 | MS.gene034736:CDS | 40.0% | |
| ACAGTTTCAAGGTGAGCAAT+TGG | - | chr1.2:44580987-44581006 | MS.gene034736:CDS | 40.0% | |
| ACATGATTCTCCTTAGTGTG+AGG | - | chr1.2:44579947-44579966 | MS.gene034736:intron | 40.0% | |
| ACCAGAGAAACACAAGGAAA+TGG | - | chr1.2:44581088-44581107 | MS.gene034736:CDS | 40.0% | |
| AGCAATTCAAGAACAAGGCA+GGG | - | chr1.2:44580852-44580871 | MS.gene034736:CDS | 40.0% | |
| ATCTACATGTATCATGCCAC+CGG | + | chr1.2:44580639-44580658 | None:intergenic | 40.0% | |
| ATGAGGATTTCCTGCATTCA+CGG | + | chr1.2:44580574-44580593 | None:intergenic | 40.0% | |
| ATGCAGGAAATCCTCATTGA+TGG | - | chr1.2:44580577-44580596 | MS.gene034736:intron | 40.0% | |
| ATGTAACTGACCTCACTTAG+TGG | - | chr1.2:44580130-44580149 | MS.gene034736:intron | 40.0% | |
| CCACTATCATTATGTTGCCA+TGG | + | chr1.2:44581177-44581196 | None:intergenic | 40.0% | |
| CCATGGCAACATAATGATAG+TGG | - | chr1.2:44581174-44581193 | MS.gene034736:CDS | 40.0% | |
| CCTTGCAGTTTGTAACTGTT+CGG | + | chr1.2:44581064-44581083 | None:intergenic | 40.0% | |
| GTATAGAACTACAAGTGAGG+AGG | - | chr1.2:44579918-44579937 | MS.gene034736:intron | 40.0% | |
| TATGGACGAAGAAGTTTCTG+TGG | - | chr1.2:44579346-44579365 | MS.gene034736:CDS | 40.0% | |
| TCACTTAGTGGGATAAGACT+AGG | - | chr1.2:44580142-44580161 | MS.gene034736:intron | 40.0% | |
| TCCATTTCCTTGTGTTTCTC+TGG | + | chr1.2:44581092-44581111 | None:intergenic | 40.0% | |
| TCGTAATAACTTCCCGCAAA+CGG | + | chr1.2:44579541-44579560 | None:intergenic | 40.0% | |
| TGTAACTGACCTCACTTAGT+GGG | - | chr1.2:44580131-44580150 | MS.gene034736:intron | 40.0% | |
| TGTGAGTTTCACTTTGATGC+AGG | - | chr1.2:44580805-44580824 | MS.gene034736:CDS | 40.0% | |
| TTTGCGGGAAGTTATTACGA+CGG | - | chr1.2:44579541-44579560 | MS.gene034736:intron | 40.0% | |
| ! | AGTTTCTGTGGCGTTGAAAA+AGG | - | chr1.2:44579358-44579377 | MS.gene034736:CDS | 40.0% |
| ! | CTATTGACTGAGTGAATCCA+AGG | + | chr1.2:44580295-44580314 | None:intergenic | 40.0% |
| ! | CTGGTGGAGAATTGGTTTAT+TGG | - | chr1.2:44579896-44579915 | MS.gene034736:intron | 40.0% |
| ! | TAGTCTTAGAAAGTCGTTGG+TGG | + | chr1.2:44579271-44579290 | None:intergenic | 40.0% |
| ! | TTTAGCATCGTGAACCGTTT+TGG | + | chr1.2:44579303-44579322 | None:intergenic | 40.0% |
| !! | CAACATAATGATAGTGGAGG+CGG | - | chr1.2:44581180-44581199 | MS.gene034736:CDS | 40.0% |
| !! | CGGCGTTATTTTACTGTTAC+TGG | - | chr1.2:44579584-44579603 | MS.gene034736:intron | 40.0% |
| !! | CGTTAGTCTTAGAAAGTCGT+TGG | + | chr1.2:44579274-44579293 | None:intergenic | 40.0% |
| !! | TAGTCTTATCCCACTAAGTG+AGG | + | chr1.2:44580143-44580162 | None:intergenic | 40.0% |
| !! | TGGAGAGTTTTAACCGTTTG+CGG | - | chr1.2:44579525-44579544 | MS.gene034736:intron | 40.0% |
| !! | TGGCAACATAATGATAGTGG+AGG | - | chr1.2:44581177-44581196 | MS.gene034736:CDS | 40.0% |
| AAATTCTTCGACGACGTCGA+AGG | - | chr1.2:44579212-44579231 | MS.gene034736:CDS | 45.0% | |
| AACCGGAATTTGGAAGGATG+TGG | - | chr1.2:44579431-44579450 | MS.gene034736:CDS | 45.0% | |
| AATTTGGAAGGATGTGGACC+GGG | - | chr1.2:44579437-44579456 | MS.gene034736:CDS | 45.0% | |
| ACTACATGGAAGCCAAATCC+AGG | + | chr1.2:44580266-44580285 | None:intergenic | 45.0% | |
| AGACTTGGAGAAGAGTCTAC+TGG | - | chr1.2:44580927-44580946 | MS.gene034736:CDS | 45.0% | |
| AGAGATGTGCTACCTGGATT+TGG | - | chr1.2:44580251-44580270 | MS.gene034736:intron | 45.0% | |
| ATCCCCTGCATTCACACAAT+CGG | + | chr1.2:44580436-44580455 | None:intergenic | 45.0% | |
| CAGGAAATCCTCATTGATGG+TGG | - | chr1.2:44580580-44580599 | MS.gene034736:intron | 45.0% | |
| CCGAACAGTTACAAACTGCA+AGG | - | chr1.2:44581061-44581080 | MS.gene034736:CDS | 45.0% | |
| CCGGTGAAACTTCTTCACTA+CGG | + | chr1.2:44579106-44579125 | None:intergenic | 45.0% | |
| CCGTAGTGAAGAAGTTTCAC+CGG | - | chr1.2:44579103-44579122 | MS.gene034736:CDS | 45.0% | |
| GAATTTGGAAGGATGTGGAC+CGG | - | chr1.2:44579436-44579455 | MS.gene034736:CDS | 45.0% | |
| GCAATTCAAGAACAAGGCAG+GGG | - | chr1.2:44580853-44580872 | MS.gene034736:CDS | 45.0% | |
| GTACCATAACTGTCATGTCG+AGG | + | chr1.2:44580969-44580988 | None:intergenic | 45.0% | |
| GTCCACATCCTTCCAAATTC+CGG | + | chr1.2:44579436-44579455 | None:intergenic | 45.0% | |
| GTTCCTCGACATGACAGTTA+TGG | - | chr1.2:44580963-44580982 | MS.gene034736:CDS | 45.0% | |
| GTTTATTCTACCTCCTGCTC+CGG | + | chr1.2:44579186-44579205 | None:intergenic | 45.0% | |
| TAATGCAGCGAACCGGAATT+TGG | - | chr1.2:44579421-44579440 | MS.gene034736:CDS | 45.0% | |
| TCACGATGCTAAAGGAGTGA+AGG | - | chr1.2:44579310-44579329 | MS.gene034736:CDS | 45.0% | |
| TCTTGAAGAGATGTGCTACC+TGG | - | chr1.2:44580245-44580264 | MS.gene034736:intron | 45.0% | |
| TGTCTGATACGTGTCAGTGT+CGG | - | chr1.2:44580025-44580044 | MS.gene034736:intron | 45.0% | |
| ! | CTACCGATTGTGTGAATGCA+GGG | - | chr1.2:44580430-44580449 | MS.gene034736:intron | 45.0% |
| ! | TACCGATTGTGTGAATGCAG+GGG | - | chr1.2:44580431-44580450 | MS.gene034736:intron | 45.0% |
| ! | TCTACCGATTGTGTGAATGC+AGG | - | chr1.2:44580429-44580448 | MS.gene034736:intron | 45.0% |
| !! | ATAATGATAGTGGAGGCGGT+GGG | - | chr1.2:44581184-44581203 | MS.gene034736:CDS | 45.0% |
| !! | GGAGAGTTTTAACCGTTTGC+GGG | - | chr1.2:44579526-44579545 | MS.gene034736:intron | 45.0% |
| ACAAGGCAGGGGAAGAATTC+TGG | - | chr1.2:44580864-44580883 | MS.gene034736:CDS | 50.0% | |
| ATGTTGCCATGGTTTCACCG+TGG | + | chr1.2:44581166-44581185 | None:intergenic | 50.0% | |
| CACATGTATCATGCCGTGAG+AGG | + | chr1.2:44580511-44580530 | None:intergenic | 50.0% | |
| CACGTCATCGAGATGACAGA+CGG | - | chr1.2:44579134-44579153 | MS.gene034736:CDS | 50.0% | |
| CGTCGTCGAAGAATTTGTCG+AGG | + | chr1.2:44579208-44579227 | None:intergenic | 50.0% | |
| CTGTCATGTCGAGGAACACT+TGG | + | chr1.2:44580960-44580979 | None:intergenic | 50.0% | |
| CTTGATCGTGGTTCTTGCCA+CGG | - | chr1.2:44581146-44581165 | MS.gene034736:CDS | 50.0% | |
| GAAGATGGTGAAGCTGAAGC+TGG | - | chr1.2:44579382-44579401 | MS.gene034736:CDS | 50.0% | |
| GAAGGAGCTTCGTTCACGTA+TGG | - | chr1.2:44579328-44579347 | MS.gene034736:CDS | 50.0% | |
| GCATGACGCTGTCAAAGACT+TGG | - | chr1.2:44580912-44580931 | MS.gene034736:CDS | 50.0% | |
| GGATGATATCGAGAGCCATG+TGG | - | chr1.2:44581008-44581027 | MS.gene034736:CDS | 50.0% | |
| GTGAAGAAGTTTCACCGGAC+CGG | - | chr1.2:44579108-44579127 | MS.gene034736:CDS | 50.0% | |
| TACATGTATCATGCCACCGG+AGG | + | chr1.2:44580636-44580655 | None:intergenic | 50.0% | |
| TCCTACCCTTGATAAGCCTC+CGG | - | chr1.2:44580617-44580636 | MS.gene034736:intron | 50.0% | |
| TTCTTGCCACGGTGAAACCA+TGG | - | chr1.2:44581157-44581176 | MS.gene034736:CDS | 50.0% | |
| ! | GGCGTTGAAAAAGGCGAAGA+TGG | - | chr1.2:44579367-44579386 | MS.gene034736:CDS | 50.0% |
| ! | TACGTGTCAGTGTCGGATAC+CGG | - | chr1.2:44580032-44580051 | MS.gene034736:intron | 50.0% |
| !! | ACTACTGACTCCGTGAATGC+AGG | - | chr1.2:44580561-44580580 | MS.gene034736:intron | 50.0% |
| !! | CATAATGATAGTGGAGGCGG+TGG | - | chr1.2:44581183-44581202 | MS.gene034736:CDS | 50.0% |
| !! | GGAAGCACCAGAGAAACACA+AGG | - | chr1.2:44581082-44581101 | MS.gene034736:CDS | 50.0% |
| !! | TAATGATAGTGGAGGCGGTG+GGG | - | chr1.2:44581185-44581204 | MS.gene034736:CDS | 50.0% |
| ACCGGAGGCTTATCAAGGGT+AGG | + | chr1.2:44580621-44580640 | None:intergenic | 55.0% | |
| AGGCTGTTCGAGGCTAATGG+AGG | + | chr1.2:44580491-44580510 | None:intergenic | 55.0% | |
| ATATCGAGAGCCATGTGGCG+AGG | - | chr1.2:44581013-44581032 | MS.gene034736:CDS | 55.0% | |
| ATCGAGATGACAGACGGTGC+CGG | - | chr1.2:44579140-44579159 | MS.gene034736:CDS | 55.0% | |
| ATGCCACCGGAGGCTTATCA+AGG | + | chr1.2:44580626-44580645 | None:intergenic | 55.0% | |
| CGTCTGTCATCTCGATGACG+TGG | + | chr1.2:44579136-44579155 | None:intergenic | 55.0% | |
| GAGAGGCTGTTCGAGGCTAA+TGG | + | chr1.2:44580494-44580513 | None:intergenic | 55.0% | |
| GATGGTGAAGCTGAAGCTGG+AGG | - | chr1.2:44579385-44579404 | MS.gene034736:CDS | 55.0% | |
| GCAGCGAACCGGAATTTGGA+AGG | - | chr1.2:44579425-44579444 | MS.gene034736:CDS | 55.0% | |
| GGCTGTTCGAGGCTAATGGA+GGG | + | chr1.2:44580490-44580509 | None:intergenic | 55.0% | |
| GTTCGAGGCTAATGGAGGGT+AGG | + | chr1.2:44580486-44580505 | None:intergenic | 55.0% | |
| TAAGTACCACCCGAAGGAGG+AGG | + | chr1.2:44581249-44581268 | None:intergenic | 55.0% | |
| TACCCTTGATAAGCCTCCGG+TGG | - | chr1.2:44580620-44580639 | MS.gene034736:intron | 55.0% | |
| TAGCCTCGAACAGCCTCTCA+CGG | - | chr1.2:44580495-44580514 | MS.gene034736:intron | 55.0% | |
| TATCGAGAGCCATGTGGCGA+GGG | - | chr1.2:44581014-44581033 | MS.gene034736:CDS | 55.0% | |
| TCATCTCGATGACGTGGTGC+CGG | + | chr1.2:44579130-44579149 | None:intergenic | 55.0% | |
| TGCCACCGGAGGCTTATCAA+GGG | + | chr1.2:44580625-44580644 | None:intergenic | 55.0% | |
| TGTGTGAATGCAGGGGATCC+TGG | - | chr1.2:44580438-44580457 | MS.gene034736:intron | 55.0% | |
| ! | ACGAGGAGTTCGGTGGTGAA+TGG | - | chr1.2:44579476-44579495 | MS.gene034736:CDS | 55.0% |
| !! | AATGATAGTGGAGGCGGTGG+GGG | - | chr1.2:44581186-44581205 | MS.gene034736:CDS | 55.0% |
| ATGCCGTGAGAGGCTGTTCG+AGG | + | chr1.2:44580501-44580520 | None:intergenic | 60.0% | |
| ATGTGGACCGGGTTCGTCGT+CGG | - | chr1.2:44579448-44579467 | MS.gene034736:CDS | 60.0% | |
| GCGAGCTCGTTTGTGCACAC+TGG | - | chr1.2:44581036-44581055 | MS.gene034736:CDS | 60.0% | |
| TCACCACCGAACTCCTCGTC+CGG | + | chr1.2:44579475-44579494 | None:intergenic | 60.0% | |
| ! | GAAGCTGAAGCTGGAGGCGT+TGG | - | chr1.2:44579391-44579410 | MS.gene034736:CDS | 60.0% |
| CCCGAAGGAGGAGGAGGTGA+CGG | + | chr1.2:44581240-44581259 | None:intergenic | 65.0% | |
| CCCGTCACCTCCTCCTCCTT+CGG | - | chr1.2:44581236-44581255 | MS.gene034736:CDS | 65.0% | |
| CCGAAGGAGGAGGAGGTGAC+GGG | + | chr1.2:44581239-44581258 | None:intergenic | 65.0% | |
| CCGTCACCTCCTCCTCCTTC+GGG | - | chr1.2:44581237-44581256 | MS.gene034736:CDS | 65.0% | |
| CGAAGGAGGAGGAGGTGACG+GGG | + | chr1.2:44581238-44581257 | None:intergenic | 65.0% | |
| GTACCACCCGAAGGAGGAGG+AGG | + | chr1.2:44581246-44581265 | None:intergenic | 65.0% | |
| GTCGGACCGGACGAGGAGTT+CGG | - | chr1.2:44579466-44579485 | MS.gene034736:CDS | 65.0% | |
| TCACCTCCTCCTCCTTCGGG+TGG | - | chr1.2:44581240-44581259 | MS.gene034736:CDS | 65.0% | |
| TCTACCTCCTGCTCCGGCTC+CGG | + | chr1.2:44579180-44579199 | None:intergenic | 65.0% | |
| ! | GAAGGAGGAGGAGGTGACGG+GGG | + | chr1.2:44581237-44581256 | None:intergenic | 65.0% |
| !! | ATGACAGACGGTGCCGGTGC+CGG | - | chr1.2:44579146-44579165 | MS.gene034736:CDS | 65.0% |
| !! | TCGATGACGTGGTGCCGGTC+CGG | + | chr1.2:44579125-44579144 | None:intergenic | 65.0% |
| ACGAGCTCGCCCTCGCCACA+TGG | + | chr1.2:44581026-44581045 | None:intergenic | 70.0% | |
| AGAACCGGAGCCGGAGCAGG+AGG | - | chr1.2:44579173-44579192 | MS.gene034736:CDS | 70.0% | |
| GACCGGGTTCGTCGTCGGAC+CGG | - | chr1.2:44579453-44579472 | MS.gene034736:CDS | 70.0% | |
| GGACCGGACGAGGAGTTCGG+TGG | - | chr1.2:44579469-44579488 | MS.gene034736:CDS | 70.0% | |
| GGGGGAGTCTGTGCTGGAGC+AGG | + | chr1.2:44581219-44581238 | None:intergenic | 70.0% | |
| GTCCGGTCCGACGACGAACC+CGG | + | chr1.2:44579458-44579477 | None:intergenic | 70.0% | |
| GTTCGTCGTCGGACCGGACG+AGG | - | chr1.2:44579459-44579478 | MS.gene034736:CDS | 70.0% | |
| TCCTGCTCCGGCTCCGGTTC+TGG | + | chr1.2:44579174-44579193 | None:intergenic | 70.0% | |
| !! | GGTGACGGGGGAGTCTGTGC+TGG | + | chr1.2:44581225-44581244 | None:intergenic | 70.0% |
| !! | TCCGGCTCCGGTTCTGGCTC+CGG | + | chr1.2:44579168-44579187 | None:intergenic | 70.0% |
| !! | TCCGGTTCTGGCTCCGGCAC+CGG | + | chr1.2:44579162-44579181 | None:intergenic | 70.0% |
| GCCAGAACCGGAGCCGGAGC+AGG | - | chr1.2:44579170-44579189 | MS.gene034736:CDS | 75.0% | |
| GCCGGAGCCAGAACCGGAGC+CGG | - | chr1.2:44579164-44579183 | MS.gene034736:CDS | 75.0% | |
| ! | GCCGGTGCCGGAGCCAGAAC+CGG | - | chr1.2:44579158-44579177 | MS.gene034736:CDS | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.2 | gene | 44579068 | 44581269 | 44579068 | ID=MS.gene034736 |
| chr1.2 | mRNA | 44579068 | 44581269 | 44579068 | ID=MS.gene034736.t1;Parent=MS.gene034736 |
| chr1.2 | exon | 44580687 | 44581269 | 44580687 | ID=MS.gene034736.t1.exon1;Parent=MS.gene034736.t1 |
| chr1.2 | CDS | 44580687 | 44581269 | 44580687 | ID=cds.MS.gene034736.t1;Parent=MS.gene034736.t1 |
| chr1.2 | exon | 44579068 | 44579510 | 44579068 | ID=MS.gene034736.t1.exon2;Parent=MS.gene034736.t1 |
| chr1.2 | CDS | 44579068 | 44579510 | 44579068 | ID=cds.MS.gene034736.t1;Parent=MS.gene034736.t1 |
| Gene Sequence |
| Protein sequence |
