Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene99692.t1 | XP_003614024.1 | 98.1 | 209 | 4 | 0 | 63 | 271 | 63 | 271 | 2.60E-108 | 401.7 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene99692.t1 | Q9S7P9 | 53.2 | 269 | 116 | 1 | 13 | 271 | 32 | 300 | 3.9e-68 | 259.6 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene99692.t1 | G7JXY1 | 98.1 | 209 | 4 | 0 | 63 | 271 | 63 | 271 | 1.9e-108 | 401.7 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene034736 | MS.gene99692 | PPI |
| MS.gene033077 | MS.gene99692 | PPI |
| MS.gene41022 | MS.gene99692 | PPI |
| MS.gene047508 | MS.gene99692 | PPI |
| MS.gene46442 | MS.gene99692 | PPI |
| MS.gene063476 | MS.gene99692 | PPI |
| MS.gene33736 | MS.gene99692 | PPI |
| MS.gene01343 | MS.gene99692 | PPI |
| MS.gene044431 | MS.gene99692 | PPI |
| MS.gene32192 | MS.gene99692 | PPI |
| MS.gene002374 | MS.gene99692 | PPI |
| MS.gene69311 | MS.gene99692 | PPI |
| MS.gene035217 | MS.gene99692 | PPI |
| MS.gene01756 | MS.gene99692 | PPI |
| MS.gene46918 | MS.gene99692 | PPI |
| MS.gene052542 | MS.gene99692 | PPI |
| MS.gene01347 | MS.gene99692 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene99692.t1 | MTR_5g043850 | 96.679 | 271 | 9 | 0 | 1 | 271 | 1 | 271 | 0.0 | 539 |
| MS.gene99692.t1 | MTR_4g109310 | 56.432 | 241 | 91 | 1 | 45 | 271 | 60 | 300 | 4.60e-90 | 269 |
| MS.gene99692.t1 | MTR_8g021950 | 58.852 | 209 | 86 | 0 | 62 | 270 | 18 | 226 | 1.19e-85 | 255 |
| MS.gene99692.t1 | MTR_3g023720 | 55.714 | 210 | 93 | 0 | 62 | 271 | 87 | 296 | 7.03e-78 | 238 |
| MS.gene99692.t1 | MTR_3g023720 | 54.483 | 145 | 66 | 0 | 62 | 206 | 87 | 231 | 7.27e-50 | 165 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene99692.t1 | AT1G13890 | 61.957 | 276 | 87 | 4 | 1 | 271 | 1 | 263 | 2.21e-110 | 319 |
| MS.gene99692.t1 | AT1G13890 | 61.957 | 276 | 87 | 4 | 1 | 271 | 1 | 263 | 2.21e-110 | 319 |
| MS.gene99692.t1 | AT5G61210 | 64.286 | 210 | 75 | 0 | 62 | 271 | 91 | 300 | 2.70e-92 | 275 |
| MS.gene99692.t1 | AT5G61210 | 64.286 | 210 | 75 | 0 | 62 | 271 | 91 | 300 | 2.70e-92 | 275 |
| MS.gene99692.t1 | AT5G07880 | 54.054 | 222 | 93 | 3 | 52 | 271 | 37 | 251 | 2.28e-75 | 230 |
| MS.gene99692.t1 | AT5G07880 | 54.054 | 222 | 93 | 3 | 52 | 271 | 37 | 251 | 2.28e-75 | 230 |
Find 75 sgRNAs with CRISPR-Local
Find 108 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTTTCCCTTCTTTGGCTTCC+AGG | 0.182763 | 5.3:+31370187 | None:intergenic |
| CTTACTCATTACATCCTTCT+TGG | 0.197030 | 5.3:+31369930 | None:intergenic |
| GAAGGGTATGGCAATTAGTA+TGG | 0.241588 | 5.3:-31369633 | MS.gene99692:CDS |
| GTGATCGCCTTTCCCTTCTT+TGG | 0.255426 | 5.3:+31370179 | None:intergenic |
| TCCAGCTAGACGAACTTCTT+TGG | 0.283624 | 5.3:-31370642 | MS.gene99692:CDS |
| CTCCTACACGTGAAAATGTT+TGG | 0.317144 | 5.3:-31370719 | None:intergenic |
| ATGTAATGAGTAAGGAAGAT+AGG | 0.317440 | 5.3:-31369921 | MS.gene99692:CDS |
| GATGATCAAGAGCTTTGTTT+TGG | 0.338749 | 5.3:+31369202 | None:intergenic |
| CTCAGAGCTCAGTGATATCT+TGG | 0.342190 | 5.3:-31369663 | MS.gene99692:CDS |
| ACATGCCACCAAGATTGTTT+AGG | 0.391915 | 5.3:+31370219 | None:intergenic |
| TATTATGAGTCCTTGTAATC+TGG | 0.399198 | 5.3:+31370366 | None:intergenic |
| GATTACAAGGACTCATAATA+TGG | 0.402221 | 5.3:-31370363 | MS.gene99692:CDS |
| TGATGATGATGACGACGATT+GGG | 0.405432 | 5.3:-31370576 | MS.gene99692:CDS |
| TCCAAAGAAGTTCGTCTAGC+TGG | 0.413831 | 5.3:+31370641 | None:intergenic |
| TACCCTACTCAAATCCTTCT+CGG | 0.421619 | 5.3:+31370331 | None:intergenic |
| TGATATCTTGGGTGATTTGA+AGG | 0.434217 | 5.3:-31369651 | MS.gene99692:CDS |
| GAATCAAAGCGTTCAGGAGT+TGG | 0.440088 | 5.3:-31370510 | MS.gene99692:CDS |
| TTTCCCTTCTTTGGCTTCCA+GGG | 0.450858 | 5.3:+31370188 | None:intergenic |
| TAGGCACTGTCAGACTCATT+AGG | 0.452289 | 5.3:+31369844 | None:intergenic |
| AGGGTTAGCTCCTTTGCCTA+AGG | 0.460085 | 5.3:-31369890 | MS.gene99692:CDS |
| ACTAGAGAATCAAAGCGTTC+AGG | 0.460562 | 5.3:-31370516 | MS.gene99692:CDS |
| CTTGGGTGATTTGAAGGGTA+TGG | 0.466279 | 5.3:-31369645 | MS.gene99692:CDS |
| TTTGAAGCCGCTGACGATGC+AGG | 0.466799 | 5.3:+31370545 | None:intergenic |
| GCATCGTCAGCGGCTTCAAA+AGG | 0.467576 | 5.3:-31370542 | MS.gene99692:CDS |
| CAAGAAGGATGTAATGAGTA+AGG | 0.469224 | 5.3:-31369929 | MS.gene99692:CDS |
| TCTTGACATGTTGCACCAGC+AGG | 0.471296 | 5.3:-31370393 | MS.gene99692:CDS |
| ACAGGCCCGGTGATTACATC+AGG | 0.473489 | 5.3:-31370158 | MS.gene99692:intron |
| TTGTAATCTGGTCACCCTGC+TGG | 0.476053 | 5.3:+31370378 | None:intergenic |
| ATATTCGAAGTGATGCTTCA+AGG | 0.481846 | 5.3:-31370418 | MS.gene99692:CDS |
| GACTTTGGCACTGGTAGGAC+GGG | 0.485010 | 5.3:+31370617 | None:intergenic |
| GTTTGTAAAACAGTATGAAA+AGG | 0.488161 | 5.3:-31369705 | MS.gene99692:intron |
| TGTAATGAGTAAGGAAGATA+GGG | 0.489900 | 5.3:-31369920 | MS.gene99692:CDS |
| GGGAAAGGCGATCACAGGCC+CGG | 0.490693 | 5.3:-31370171 | MS.gene99692:CDS |
| AAGGAAGATAGGGCAAAGCT+AGG | 0.496533 | 5.3:-31369910 | MS.gene99692:CDS |
| TAAACCCTGGAAGCCAAAGA+AGG | 0.503183 | 5.3:-31370192 | MS.gene99692:CDS |
| GAAAAGGCTAAACAAGATGA+TGG | 0.507078 | 5.3:-31369689 | MS.gene99692:CDS |
| TAATTTGCGTGCACGCTGGT+TGG | 0.514052 | 5.3:+31369137 | None:intergenic |
| CTACCAGTGCCAAAGTCAAA+AGG | 0.516003 | 5.3:-31370611 | MS.gene99692:CDS |
| TGACTTTGGCACTGGTAGGA+CGG | 0.522101 | 5.3:+31370616 | None:intergenic |
| ATGATGATGATGACGACGAT+TGG | 0.527333 | 5.3:-31370577 | MS.gene99692:CDS |
| TCAGAGCTCAGTGATATCTT+GGG | 0.533560 | 5.3:-31369662 | MS.gene99692:CDS |
| ACAGTGTTAATAATTGTTTG+AGG | 0.533588 | 5.3:-31370451 | MS.gene99692:CDS |
| AAGAAGGGAAAGGCGATCAC+AGG | 0.534683 | 5.3:-31370176 | MS.gene99692:CDS |
| GGGTTAGCTCCTTTGCCTAA+GGG | 0.540730 | 5.3:-31369889 | MS.gene99692:CDS |
| AGCAGGGTGACCAGATTACA+AGG | 0.546881 | 5.3:-31370376 | MS.gene99692:CDS |
| CTAGTAATTTGCGTGCACGC+TGG | 0.547633 | 5.3:+31369133 | None:intergenic |
| GTATGGGAACTGAACTTGAC+AGG | 0.548017 | 5.3:-31369616 | MS.gene99692:intron |
| AAGGGTATGGCAATTAGTAT+GGG | 0.550887 | 5.3:-31369632 | MS.gene99692:CDS |
| AACAAAGCTCTTGATCATCT+CGG | 0.558049 | 5.3:-31369198 | MS.gene99692:CDS |
| GCAGAACGTCCCTTAGGCAA+AGG | 0.562412 | 5.3:+31369880 | None:intergenic |
| AGGAAGATAGGGCAAAGCTA+GGG | 0.563180 | 5.3:-31369909 | MS.gene99692:CDS |
| GATATCTTGGGTGATTTGAA+GGG | 0.566040 | 5.3:-31369650 | MS.gene99692:CDS |
| AGAAAACCTGATGTAATCAC+CGG | 0.570974 | 5.3:+31370152 | None:intergenic |
| ATCAGATAACACATCCAAGA+AGG | 0.572526 | 5.3:-31369944 | MS.gene99692:intron |
| TCGTCAGCGGCTTCAAAAGG+TGG | 0.573044 | 5.3:-31370539 | MS.gene99692:CDS |
| GGAAAACTATGCAGTGAACA+AGG | 0.575724 | 5.3:-31370489 | MS.gene99692:CDS |
| CTGGAAGCCAAAGAAGGGAA+AGG | 0.585814 | 5.3:-31370186 | MS.gene99692:CDS |
| CACCGAGAAGGATTTGAGTA+GGG | 0.586800 | 5.3:-31370333 | MS.gene99692:intron |
| AGTTCGTCTAGCTGGAGTGA+TGG | 0.587136 | 5.3:+31370649 | None:intergenic |
| AAACTCCTAAACAATCTTGG+TGG | 0.591477 | 5.3:-31370224 | MS.gene99692:CDS |
| GTCAGACTCATTAGGAGGCG+TGG | 0.594482 | 5.3:+31369852 | None:intergenic |
| ACACCGAGAAGGATTTGAGT+AGG | 0.594649 | 5.3:-31370334 | MS.gene99692:CDS |
| AAACCCTGGAAGCCAAAGAA+GGG | 0.600415 | 5.3:-31370191 | MS.gene99692:CDS |
| GATGATGATGACGACGATTG+GGG | 0.605563 | 5.3:-31370575 | MS.gene99692:CDS |
| GTGGCATGTTCTCTAAACCC+TGG | 0.606426 | 5.3:-31370205 | MS.gene99692:CDS |
| CTATGCAGTGAACAAGGCTG+AGG | 0.612096 | 5.3:-31370483 | MS.gene99692:CDS |
| GTAGGAGCAGAACGTCCCTT+AGG | 0.612516 | 5.3:+31369874 | None:intergenic |
| GAGCTGAACAATCGAATGAA+AGG | 0.615161 | 5.3:-31369162 | MS.gene99692:CDS |
| GACTCATTAGGAGGCGTGGT+AGG | 0.617743 | 5.3:+31369856 | None:intergenic |
| AAGAAAGCCTGCATCGTCAG+CGG | 0.627229 | 5.3:-31370552 | MS.gene99692:CDS |
| TATGGTTGTCGACACCGAGA+AGG | 0.631327 | 5.3:-31370345 | MS.gene99692:CDS |
| CTTGACATGTTGCACCAGCA+GGG | 0.647892 | 5.3:-31370392 | MS.gene99692:CDS |
| GAAAACCTGATGTAATCACC+GGG | 0.660551 | 5.3:+31370153 | None:intergenic |
| TAATTGTTTGAGGATTGCTG+AGG | 0.663230 | 5.3:-31370441 | MS.gene99692:CDS |
| GCACTGTCAGACTCATTAGG+AGG | 0.663531 | 5.3:+31369847 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ACTAATATTATAATTGAATT+TGG | - | chr5.3:31369856-31369875 | MS.gene99692:CDS | 10.0% |
| !! | GGTATAAAAGATAAAATATG+AGG | - | chr5.3:31370316-31370335 | MS.gene99692:intron | 20.0% |
| !!! | AGAGTTAGAATGTAAAATTT+TGG | + | chr5.3:31369574-31369593 | None:intergenic | 20.0% |
| !!! | GAGTTAGAATGTAAAATTTT+GGG | + | chr5.3:31369573-31369592 | None:intergenic | 20.0% |
| !!! | TATTGGATTTTATTTTTGAG+AGG | - | chr5.3:31370490-31370509 | MS.gene99692:CDS | 20.0% |
| ! | ACAGTGTTAATAATTGTTTG+AGG | - | chr5.3:31369378-31369397 | MS.gene99692:intron | 25.0% |
| ! | ATAATAACTCATAAGCATGA+AGG | + | chr5.3:31369708-31369727 | None:intergenic | 25.0% |
| ! | GTTTGTAAAACAGTATGAAA+AGG | - | chr5.3:31370124-31370143 | MS.gene99692:intron | 25.0% |
| ! | TAATTCATGTCATACAATGT+TGG | + | chr5.3:31370360-31370379 | None:intergenic | 25.0% |
| ! | TATCATAAAATTGCAACATC+AGG | + | chr5.3:31370598-31370617 | None:intergenic | 25.0% |
| ! | TTCATGCTTATGAGTTATTA+TGG | - | chr5.3:31369707-31369726 | MS.gene99692:intron | 25.0% |
| !! | ACATATTTTTCTATGCACAA+CGG | + | chr5.3:31370430-31370449 | None:intergenic | 25.0% |
| !!! | AAATAGTTTCCTTTTGACTT+TGG | + | chr5.3:31369230-31369249 | None:intergenic | 25.0% |
| !!! | ATATACATGATTTGTTATGC+AGG | + | chr5.3:31369836-31369855 | None:intergenic | 25.0% |
| !!! | CTTGTTTCTTTTCTTTTTGT+TGG | - | chr5.3:31369528-31369547 | MS.gene99692:intron | 25.0% |
| ATGTAATGAGTAAGGAAGAT+AGG | - | chr5.3:31369908-31369927 | MS.gene99692:CDS | 30.0% | |
| CTTAGCATAACACAACTATA+TGG | + | chr5.3:31370557-31370576 | None:intergenic | 30.0% | |
| GAAAAACTCCTAAACAATCT+TGG | - | chr5.3:31369602-31369621 | MS.gene99692:intron | 30.0% | |
| GATTACAAGGACTCATAATA+TGG | - | chr5.3:31369466-31369485 | MS.gene99692:intron | 30.0% | |
| GTTAATATTGTTCACTCTAG+AGG | + | chr5.3:31369777-31369796 | None:intergenic | 30.0% | |
| TATTATGAGTCCTTGTAATC+TGG | + | chr5.3:31369466-31369485 | None:intergenic | 30.0% | |
| TGTAATGAGTAAGGAAGATA+GGG | - | chr5.3:31369909-31369928 | MS.gene99692:CDS | 30.0% | |
| TTTACATTCTAACTCTCACA+GGG | - | chr5.3:31369578-31369597 | MS.gene99692:intron | 30.0% | |
| ! | TTTTACATTCTAACTCTCAC+AGG | - | chr5.3:31369577-31369596 | MS.gene99692:intron | 30.0% |
| !! | GAAGAGATCGAATTTTGAAA+TGG | - | chr5.3:31370452-31370471 | MS.gene99692:CDS | 30.0% |
| AAACTCCTAAACAATCTTGG+TGG | - | chr5.3:31369605-31369624 | MS.gene99692:intron | 35.0% | |
| AACAAAGCTCTTGATCATCT+CGG | - | chr5.3:31370631-31370650 | MS.gene99692:CDS | 35.0% | |
| ACCGTGGATAAACAAATCAA+CGG | - | chr5.3:31369795-31369814 | MS.gene99692:intron | 35.0% | |
| AGAAAACCTGATGTAATCAC+CGG | + | chr5.3:31369680-31369699 | None:intergenic | 35.0% | |
| AGAGTGAACAATATTAACCG+TGG | - | chr5.3:31369779-31369798 | MS.gene99692:intron | 35.0% | |
| ATATTCGAAGTGATGCTTCA+AGG | - | chr5.3:31369411-31369430 | MS.gene99692:intron | 35.0% | |
| ATCAGATAACACATCCAAGA+AGG | - | chr5.3:31369885-31369904 | MS.gene99692:CDS | 35.0% | |
| CAAGAAGGATGTAATGAGTA+AGG | - | chr5.3:31369900-31369919 | MS.gene99692:CDS | 35.0% | |
| CTTACTCATTACATCCTTCT+TGG | + | chr5.3:31369902-31369921 | None:intergenic | 35.0% | |
| GAAAAGGCTAAACAAGATGA+TGG | - | chr5.3:31370140-31370159 | MS.gene99692:intron | 35.0% | |
| GATATCTTGGGTGATTTGAA+GGG | - | chr5.3:31370179-31370198 | MS.gene99692:CDS | 35.0% | |
| GGTTGAAATTAGCTCGTTAT+TGG | - | chr5.3:31370473-31370492 | MS.gene99692:CDS | 35.0% | |
| GTGCATCGAAGATATATATG+AGG | - | chr5.3:31370295-31370314 | MS.gene99692:intron | 35.0% | |
| TAATTGTTTGAGGATTGCTG+AGG | - | chr5.3:31369388-31369407 | MS.gene99692:intron | 35.0% | |
| TGATATCTTGGGTGATTTGA+AGG | - | chr5.3:31370178-31370197 | MS.gene99692:CDS | 35.0% | |
| ! | AAGGGTATGGCAATTAGTAT+GGG | - | chr5.3:31370197-31370216 | MS.gene99692:CDS | 35.0% |
| ! | ATTTGATTTCGCTAAGCATG+CGG | - | chr5.3:31370385-31370404 | MS.gene99692:CDS | 35.0% |
| !! | ACCGTTGATTTGTTTATCCA+CGG | + | chr5.3:31369799-31369818 | None:intergenic | 35.0% |
| !!! | ACATACGTCGATTTTCTGAT+AGG | + | chr5.3:31370007-31370026 | None:intergenic | 35.0% |
| !!! | GATGATCAAGAGCTTTGTTT+TGG | + | chr5.3:31370630-31370649 | None:intergenic | 35.0% |
| ACATGCCACCAAGATTGTTT+AGG | + | chr5.3:31369613-31369632 | None:intergenic | 40.0% | |
| GAAAACCTGATGTAATCACC+GGG | + | chr5.3:31369679-31369698 | None:intergenic | 40.0% | |
| GAGCTGAACAATCGAATGAA+AGG | - | chr5.3:31370667-31370686 | MS.gene99692:CDS | 40.0% | |
| GGAAAACTATGCAGTGAACA+AGG | - | chr5.3:31369340-31369359 | MS.gene99692:intron | 40.0% | |
| TACCCTACTCAAATCCTTCT+CGG | + | chr5.3:31369501-31369520 | None:intergenic | 40.0% | |
| TCAGAGCTCAGTGATATCTT+GGG | - | chr5.3:31370167-31370186 | MS.gene99692:CDS | 40.0% | |
| TTCATGCGCAAATACGCATT+AGG | - | chr5.3:31369749-31369768 | MS.gene99692:intron | 40.0% | |
| ! | ACTAGAGAATCAAAGCGTTC+AGG | - | chr5.3:31369313-31369332 | MS.gene99692:intron | 40.0% |
| ! | ATGATGATGATGACGACGAT+TGG | - | chr5.3:31369252-31369271 | MS.gene99692:intron | 40.0% |
| ! | GAAGGGTATGGCAATTAGTA+TGG | - | chr5.3:31370196-31370215 | MS.gene99692:CDS | 40.0% |
| ! | TGATGATGATGACGACGATT+GGG | - | chr5.3:31369253-31369272 | MS.gene99692:intron | 40.0% |
| !!! | TTTCCTTTTGACTTTGGCAC+TGG | + | chr5.3:31369224-31369243 | None:intergenic | 40.0% |
| AAACCCTGGAAGCCAAAGAA+GGG | - | chr5.3:31369638-31369657 | MS.gene99692:CDS | 45.0% | |
| AAGGAAGATAGGGCAAAGCT+AGG | - | chr5.3:31369919-31369938 | MS.gene99692:CDS | 45.0% | |
| ACACCGAGAAGGATTTGAGT+AGG | - | chr5.3:31369495-31369514 | MS.gene99692:intron | 45.0% | |
| AGGAAGATAGGGCAAAGCTA+GGG | - | chr5.3:31369920-31369939 | MS.gene99692:CDS | 45.0% | |
| CACCGAGAAGGATTTGAGTA+GGG | - | chr5.3:31369496-31369515 | MS.gene99692:intron | 45.0% | |
| CTACCAGTGCCAAAGTCAAA+AGG | - | chr5.3:31369218-31369237 | MS.gene99692:intron | 45.0% | |
| CTCAGAGCTCAGTGATATCT+TGG | - | chr5.3:31370166-31370185 | MS.gene99692:CDS | 45.0% | |
| CTTGGGTGATTTGAAGGGTA+TGG | - | chr5.3:31370184-31370203 | MS.gene99692:CDS | 45.0% | |
| GTATGGGAACTGAACTTGAC+AGG | - | chr5.3:31370213-31370232 | MS.gene99692:CDS | 45.0% | |
| TAAACCCTGGAAGCCAAAGA+AGG | - | chr5.3:31369637-31369656 | MS.gene99692:CDS | 45.0% | |
| TCCAAAGAAGTTCGTCTAGC+TGG | + | chr5.3:31369191-31369210 | None:intergenic | 45.0% | |
| TCCAGCTAGACGAACTTCTT+TGG | - | chr5.3:31369187-31369206 | MS.gene99692:CDS | 45.0% | |
| ! | GAATCAAAGCGTTCAGGAGT+TGG | - | chr5.3:31369319-31369338 | MS.gene99692:intron | 45.0% |
| ! | GATGATGATGACGACGATTG+GGG | - | chr5.3:31369254-31369273 | MS.gene99692:intron | 45.0% |
| ! | TAGGCACTGTCAGACTCATT+AGG | + | chr5.3:31369988-31370007 | None:intergenic | 45.0% |
| ! | TTTCCCTTCTTTGGCTTCCA+GGG | + | chr5.3:31369644-31369663 | None:intergenic | 45.0% |
| !!! | CTTTTGACTTTGGCACTGGT+AGG | + | chr5.3:31369220-31369239 | None:intergenic | 45.0% |
| !!! | TGTGCTCTTTTCTGGTTCAG+CGG | + | chr5.3:31369159-31369178 | None:intergenic | 45.0% |
| AAGAAAGCCTGCATCGTCAG+CGG | - | chr5.3:31369277-31369296 | MS.gene99692:intron | 50.0% | |
| AAGAAGGGAAAGGCGATCAC+AGG | - | chr5.3:31369653-31369672 | MS.gene99692:CDS | 50.0% | |
| AGCAGGGTGACCAGATTACA+AGG | - | chr5.3:31369453-31369472 | MS.gene99692:intron | 50.0% | |
| AGTTCGTCTAGCTGGAGTGA+TGG | + | chr5.3:31369183-31369202 | None:intergenic | 50.0% | |
| ATTTCGCTAAGCATGCGGTC+AGG | - | chr5.3:31370390-31370409 | MS.gene99692:CDS | 50.0% | |
| CTATGCAGTGAACAAGGCTG+AGG | - | chr5.3:31369346-31369365 | MS.gene99692:intron | 50.0% | |
| CTGGAAGCCAAAGAAGGGAA+AGG | - | chr5.3:31369643-31369662 | MS.gene99692:CDS | 50.0% | |
| CTTGACATGTTGCACCAGCA+GGG | - | chr5.3:31369437-31369456 | MS.gene99692:intron | 50.0% | |
| GCACTGTCAGACTCATTAGG+AGG | + | chr5.3:31369985-31370004 | None:intergenic | 50.0% | |
| GTGATCGCCTTTCCCTTCTT+TGG | + | chr5.3:31369653-31369672 | None:intergenic | 50.0% | |
| GTGGCATGTTCTCTAAACCC+TGG | - | chr5.3:31369624-31369643 | MS.gene99692:CDS | 50.0% | |
| TATGGTTGTCGACACCGAGA+AGG | - | chr5.3:31369484-31369503 | MS.gene99692:intron | 50.0% | |
| TCTTGACATGTTGCACCAGC+AGG | - | chr5.3:31369436-31369455 | MS.gene99692:intron | 50.0% | |
| TTGTAATCTGGTCACCCTGC+TGG | + | chr5.3:31369454-31369473 | None:intergenic | 50.0% | |
| ! | CTAGTAATTTGCGTGCACGC+TGG | + | chr5.3:31370699-31370718 | None:intergenic | 50.0% |
| ! | CTTTCCCTTCTTTGGCTTCC+AGG | + | chr5.3:31369645-31369664 | None:intergenic | 50.0% |
| ! | GTGATGGCTGTGCTCTTTTC+TGG | + | chr5.3:31369167-31369186 | None:intergenic | 50.0% |
| ! | TAATTTGCGTGCACGCTGGT+TGG | + | chr5.3:31370695-31370714 | None:intergenic | 50.0% |
| !! | AGGGTTAGCTCCTTTGCCTA+AGG | - | chr5.3:31369939-31369958 | MS.gene99692:CDS | 50.0% |
| !! | GGGTTAGCTCCTTTGCCTAA+GGG | - | chr5.3:31369940-31369959 | MS.gene99692:CDS | 50.0% |
| !! | TGACTTTGGCACTGGTAGGA+CGG | + | chr5.3:31369216-31369235 | None:intergenic | 50.0% |
| !!! | CTCTTTTCTGGTTCAGCGGT+TGG | + | chr5.3:31369155-31369174 | None:intergenic | 50.0% |
| !!! | TTTTCTGGTTCAGCGGTTGG+TGG | + | chr5.3:31369152-31369171 | None:intergenic | 50.0% |
| ACAGGCCCGGTGATTACATC+AGG | - | chr5.3:31369671-31369690 | MS.gene99692:CDS | 55.0% | |
| GCAGAACGTCCCTTAGGCAA+AGG | + | chr5.3:31369952-31369971 | None:intergenic | 55.0% | |
| GCATCGTCAGCGGCTTCAAA+AGG | - | chr5.3:31369287-31369306 | MS.gene99692:intron | 55.0% | |
| GTAGGAGCAGAACGTCCCTT+AGG | + | chr5.3:31369958-31369977 | None:intergenic | 55.0% | |
| GTCAGACTCATTAGGAGGCG+TGG | + | chr5.3:31369980-31369999 | None:intergenic | 55.0% | |
| TCGTCAGCGGCTTCAAAAGG+TGG | - | chr5.3:31369290-31369309 | MS.gene99692:intron | 55.0% | |
| ! | GACTCATTAGGAGGCGTGGT+AGG | + | chr5.3:31369976-31369995 | None:intergenic | 55.0% |
| ! | TTTGAAGCCGCTGACGATGC+AGG | + | chr5.3:31369287-31369306 | None:intergenic | 55.0% |
| !! | GACTTTGGCACTGGTAGGAC+GGG | + | chr5.3:31369215-31369234 | None:intergenic | 55.0% |
| GGGAAAGGCGATCACAGGCC+CGG | - | chr5.3:31369658-31369677 | MS.gene99692:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5.3 | gene | 31369125 | 31370726 | 31369125 | ID=MS.gene99692 |
| chr5.3 | mRNA | 31369125 | 31370726 | 31369125 | ID=MS.gene99692.t1;Parent=MS.gene99692 |
| chr5.3 | exon | 31370334 | 31370726 | 31370334 | ID=MS.gene99692.t1.exon1;Parent=MS.gene99692.t1 |
| chr5.3 | CDS | 31370334 | 31370726 | 31370334 | ID=cds.MS.gene99692.t1;Parent=MS.gene99692.t1 |
| chr5.3 | exon | 31370159 | 31370252 | 31370159 | ID=MS.gene99692.t1.exon2;Parent=MS.gene99692.t1 |
| chr5.3 | CDS | 31370159 | 31370252 | 31370159 | ID=cds.MS.gene99692.t1;Parent=MS.gene99692.t1 |
| chr5.3 | exon | 31369831 | 31369961 | 31369831 | ID=MS.gene99692.t1.exon3;Parent=MS.gene99692.t1 |
| chr5.3 | CDS | 31369831 | 31369961 | 31369831 | ID=cds.MS.gene99692.t1;Parent=MS.gene99692.t1 |
| chr5.3 | exon | 31369617 | 31369714 | 31369617 | ID=MS.gene99692.t1.exon4;Parent=MS.gene99692.t1 |
| chr5.3 | CDS | 31369617 | 31369714 | 31369617 | ID=cds.MS.gene99692.t1;Parent=MS.gene99692.t1 |
| chr5.3 | exon | 31369125 | 31369224 | 31369125 | ID=MS.gene99692.t1.exon5;Parent=MS.gene99692.t1 |
| chr5.3 | CDS | 31369125 | 31369224 | 31369125 | ID=cds.MS.gene99692.t1;Parent=MS.gene99692.t1 |
| Gene Sequence |
| Protein sequence |
