Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene53170.t1 | XP_003614024.1 | 98.1 | 209 | 4 | 0 | 63 | 271 | 63 | 271 | 2.60E-108 | 401.7 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene53170.t1 | Q9S7P9 | 64.1 | 209 | 75 | 0 | 63 | 271 | 92 | 300 | 2.3e-68 | 260.4 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene53170.t1 | G7JXY1 | 98.1 | 209 | 4 | 0 | 63 | 271 | 63 | 271 | 1.9e-108 | 401.7 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene035217 | MS.gene53170 | PPI |
| MS.gene01756 | MS.gene53170 | PPI |
| MS.gene052542 | MS.gene53170 | PPI |
| MS.gene034736 | MS.gene53170 | PPI |
| MS.gene53170 | MS.gene063476 | PPI |
| MS.gene033077 | MS.gene53170 | PPI |
| MS.gene047508 | MS.gene53170 | PPI |
| MS.gene53170 | MS.gene46442 | PPI |
| MS.gene53170 | MS.gene01347 | PPI |
| MS.gene33736 | MS.gene53170 | PPI |
| MS.gene53170 | MS.gene41022 | PPI |
| MS.gene53170 | MS.gene46918 | PPI |
| MS.gene01343 | MS.gene53170 | PPI |
| MS.gene044431 | MS.gene53170 | PPI |
| MS.gene32192 | MS.gene53170 | PPI |
| MS.gene002374 | MS.gene53170 | PPI |
| MS.gene69311 | MS.gene53170 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene53170.t1 | MTR_5g043850 | 97.786 | 271 | 6 | 0 | 1 | 271 | 1 | 271 | 0.0 | 545 |
| MS.gene53170.t1 | MTR_4g109310 | 56.432 | 241 | 91 | 1 | 45 | 271 | 60 | 300 | 3.82e-90 | 269 |
| MS.gene53170.t1 | MTR_8g021950 | 58.852 | 209 | 86 | 0 | 62 | 270 | 18 | 226 | 1.10e-85 | 255 |
| MS.gene53170.t1 | MTR_3g023720 | 55.714 | 210 | 93 | 0 | 62 | 271 | 87 | 296 | 5.84e-78 | 238 |
| MS.gene53170.t1 | MTR_3g023720 | 54.483 | 145 | 66 | 0 | 62 | 206 | 87 | 231 | 6.97e-50 | 165 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene53170.t1 | AT1G13890 | 62.319 | 276 | 86 | 4 | 1 | 271 | 1 | 263 | 2.89e-111 | 322 |
| MS.gene53170.t1 | AT1G13890 | 62.319 | 276 | 86 | 4 | 1 | 271 | 1 | 263 | 2.89e-111 | 322 |
| MS.gene53170.t1 | AT5G61210 | 53.903 | 269 | 114 | 1 | 13 | 271 | 32 | 300 | 1.30e-92 | 276 |
| MS.gene53170.t1 | AT5G61210 | 53.903 | 269 | 114 | 1 | 13 | 271 | 32 | 300 | 1.30e-92 | 276 |
| MS.gene53170.t1 | AT5G07880 | 54.054 | 222 | 93 | 3 | 52 | 271 | 37 | 251 | 2.41e-75 | 230 |
| MS.gene53170.t1 | AT5G07880 | 54.054 | 222 | 93 | 3 | 52 | 271 | 37 | 251 | 2.41e-75 | 230 |
Find 72 sgRNAs with CRISPR-Local
Find 120 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTTTCCCTTCTTTGGCTTCC+AGG | 0.182763 | 5.4:+33059972 | None:intergenic |
| CTTACTCATTACATCCTTCT+TGG | 0.197030 | 5.4:+33059715 | None:intergenic |
| GAAGGGTATGGCAATTAGTA+TGG | 0.241588 | 5.4:-33059418 | MS.gene53170:CDS |
| GTGATCGCCTTTCCCTTCTT+TGG | 0.255426 | 5.4:+33059964 | None:intergenic |
| ACAGTGTTAATAATTGTTTA+AGG | 0.255903 | 5.4:-33060463 | MS.gene53170:CDS |
| CTCCTACACGTGAAAATGTT+TGG | 0.317144 | 5.4:-33060731 | None:intergenic |
| ATGTAATGAGTAAGGAAGAT+AGG | 0.317440 | 5.4:-33059706 | MS.gene53170:CDS |
| CTCAGAACTCAGCGATATCT+TGG | 0.328955 | 5.4:-33059448 | MS.gene53170:CDS |
| GATGATCAAGAGCTTTGTTT+TGG | 0.338749 | 5.4:+33059000 | None:intergenic |
| ACATGCCACCAAGATTGTTT+AGG | 0.391915 | 5.4:+33060004 | None:intergenic |
| CGATATCTTGGGCGATTTGA+AGG | 0.397316 | 5.4:-33059436 | MS.gene53170:CDS |
| TATTATGAGTCCTTGTAATC+TGG | 0.399198 | 5.4:+33060378 | None:intergenic |
| GATTACAAGGACTCATAATA+TGG | 0.402221 | 5.4:-33060375 | MS.gene53170:CDS |
| TGATGATGACGATGACGATT+GGG | 0.405432 | 5.4:-33060588 | MS.gene53170:CDS |
| TACCCTACTCAAATCCTTCT+CGG | 0.421619 | 5.4:+33060343 | None:intergenic |
| ACTAGAGAATCAAAGTGTTC+AGG | 0.432628 | 5.4:-33060528 | MS.gene53170:CDS |
| TCTGAAGAAGTTCGTCTAGC+TGG | 0.433799 | 5.4:+33060653 | None:intergenic |
| TAGGCGCTGTCAGACTCATT+AGG | 0.450827 | 5.4:+33059629 | None:intergenic |
| TTTCCCTTCTTTGGCTTCCA+GGG | 0.450858 | 5.4:+33059973 | None:intergenic |
| AGGGTTAGCTCCTTTGCCTA+AGG | 0.460085 | 5.4:-33059675 | MS.gene53170:CDS |
| GAGAAACTCCTAAACAATCT+TGG | 0.464269 | 5.4:-33060012 | MS.gene53170:CDS |
| TTTGAAGCCGCTGACGATGC+AGG | 0.466799 | 5.4:+33060557 | None:intergenic |
| GCATCGTCAGCGGCTTCAAA+AGG | 0.467576 | 5.4:-33060554 | MS.gene53170:CDS |
| CAAGAAGGATGTAATGAGTA+AGG | 0.469224 | 5.4:-33059714 | MS.gene53170:CDS |
| TCTTGACATGTTGCACCAGC+AGG | 0.471296 | 5.4:-33060405 | MS.gene53170:CDS |
| ACAGGCCCGGTGATTACATC+AGG | 0.473489 | 5.4:-33059943 | MS.gene53170:intron |
| TTGTAATCTGGTCACCCTGC+TGG | 0.476053 | 5.4:+33060390 | None:intergenic |
| GAATCAAAGTGTTCAGGAGT+TGG | 0.476538 | 5.4:-33060522 | MS.gene53170:CDS |
| ATATTCGAAGTGATGCTTCA+AGG | 0.481846 | 5.4:-33060430 | MS.gene53170:CDS |
| CTTGGGCGATTTGAAGGGTA+TGG | 0.482056 | 5.4:-33059430 | MS.gene53170:CDS |
| GACTTTGGCACTGGTAGGAC+GGG | 0.485010 | 5.4:+33060629 | None:intergenic |
| TGTAATGAGTAAGGAAGATA+GGG | 0.489900 | 5.4:-33059705 | MS.gene53170:CDS |
| GGGAAAGGCGATCACAGGCC+CGG | 0.490693 | 5.4:-33059956 | MS.gene53170:CDS |
| AAGGAAGATAGGGCAAAGCT+AGG | 0.496533 | 5.4:-33059695 | MS.gene53170:CDS |
| TAAACCCTGGAAGCCAAAGA+AGG | 0.503183 | 5.4:-33059977 | MS.gene53170:CDS |
| TCAGAACTCAGCGATATCTT+GGG | 0.512833 | 5.4:-33059447 | MS.gene53170:CDS |
| TAATTTGCGTGCACGCTGGT+TGG | 0.514052 | 5.4:+33058935 | None:intergenic |
| CTACCAGTGCCAAAGTCAAA+AGG | 0.516003 | 5.4:-33060623 | MS.gene53170:CDS |
| TGACTTTGGCACTGGTAGGA+CGG | 0.522101 | 5.4:+33060628 | None:intergenic |
| ATGATGATGACGATGACGAT+TGG | 0.532354 | 5.4:-33060589 | MS.gene53170:CDS |
| AAGAAGGGAAAGGCGATCAC+AGG | 0.534683 | 5.4:-33059961 | MS.gene53170:CDS |
| GGGTTAGCTCCTTTGCCTAA+GGG | 0.540730 | 5.4:-33059674 | MS.gene53170:CDS |
| GATATCTTGGGCGATTTGAA+GGG | 0.544554 | 5.4:-33059435 | MS.gene53170:CDS |
| AGCAGGGTGACCAGATTACA+AGG | 0.546881 | 5.4:-33060388 | MS.gene53170:CDS |
| CTAGTAATTTGCGTGCACGC+TGG | 0.547633 | 5.4:+33058931 | None:intergenic |
| GTATGGGAACTGAACTTGAC+AGG | 0.548017 | 5.4:-33059401 | MS.gene53170:intron |
| AAGGGTATGGCAATTAGTAT+GGG | 0.550887 | 5.4:-33059417 | MS.gene53170:CDS |
| AACAAAGCTCTTGATCATCT+CGG | 0.558049 | 5.4:-33058996 | MS.gene53170:CDS |
| GCAGAACGTCCCTTAGGCAA+AGG | 0.562412 | 5.4:+33059665 | None:intergenic |
| AGGAAGATAGGGCAAAGCTA+GGG | 0.563180 | 5.4:-33059694 | MS.gene53170:CDS |
| AGAAAACCTGATGTAATCAC+CGG | 0.570974 | 5.4:+33059937 | None:intergenic |
| ATCAGATAACACATCCAAGA+AGG | 0.572526 | 5.4:-33059729 | MS.gene53170:intron |
| TCGTCAGCGGCTTCAAAAGG+TGG | 0.573044 | 5.4:-33060551 | MS.gene53170:CDS |
| GGAAAACTATGCAGTGAACA+AGG | 0.575724 | 5.4:-33060501 | MS.gene53170:CDS |
| GTCAGACTCATTAGGAGGCG+TGG | 0.583438 | 5.4:+33059637 | None:intergenic |
| CTGGAAGCCAAAGAAGGGAA+AGG | 0.585814 | 5.4:-33059971 | MS.gene53170:CDS |
| CACCGAGAAGGATTTGAGTA+GGG | 0.586800 | 5.4:-33060345 | MS.gene53170:intron |
| AGTTCGTCTAGCTGGAGTGA+TGG | 0.587136 | 5.4:+33060661 | None:intergenic |
| ACACCGAGAAGGATTTGAGT+AGG | 0.594649 | 5.4:-33060346 | MS.gene53170:CDS |
| AAACCCTGGAAGCCAAAGAA+GGG | 0.600415 | 5.4:-33059976 | MS.gene53170:CDS |
| AAACTCCTAAACAATCTTGG+TGG | 0.601235 | 5.4:-33060009 | MS.gene53170:CDS |
| GTGGCATGTTCTCTAAACCC+TGG | 0.606426 | 5.4:-33059990 | MS.gene53170:CDS |
| GTAGGAGCAGAACGTCCCTT+AGG | 0.612516 | 5.4:+33059659 | None:intergenic |
| GAGCTGAACAATCGAATGAA+AGG | 0.615161 | 5.4:-33058960 | MS.gene53170:CDS |
| GACTCATTAGGAGGCGTGGT+AGG | 0.617743 | 5.4:+33059641 | None:intergenic |
| GATGATGACGATGACGATTG+GGG | 0.625243 | 5.4:-33060587 | MS.gene53170:CDS |
| AAGAAAGCCTGCATCGTCAG+CGG | 0.627229 | 5.4:-33060564 | MS.gene53170:CDS |
| TATGGTTGTCGACACCGAGA+AGG | 0.631327 | 5.4:-33060357 | MS.gene53170:CDS |
| GCGCTGTCAGACTCATTAGG+AGG | 0.647145 | 5.4:+33059632 | None:intergenic |
| CTTGACATGTTGCACCAGCA+GGG | 0.647892 | 5.4:-33060404 | MS.gene53170:CDS |
| GAAAACCTGATGTAATCACC+GGG | 0.660551 | 5.4:+33059938 | None:intergenic |
| TAATTGTTTAAGGATTGCTG+AGG | 0.664442 | 5.4:-33060453 | MS.gene53170:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ACTAATATTATAATTGAATT+TGG | - | chr5.4:33059881-33059900 | MS.gene53170:intron | 10.0% |
| !! | ACAATTAGAATGTAAAATTT+CGG | + | chr5.4:33059599-33059618 | None:intergenic | 15.0% |
| !! | ACAGTGTTAATAATTGTTTA+AGG | - | chr5.4:33059176-33059195 | MS.gene53170:intron | 20.0% |
| !! | CAATTAGAATGTAAAATTTC+GGG | + | chr5.4:33059598-33059617 | None:intergenic | 20.0% |
| !! | TTTAATCATTGTACATCATT+AGG | - | chr5.4:33060278-33060297 | MS.gene53170:intron | 20.0% |
| !!! | TATTGGATTTTATTTTTGAG+AGG | - | chr5.4:33060493-33060512 | MS.gene53170:CDS | 20.0% |
| ! | ATCATAAAATTGCAACATCA+GGG | + | chr5.4:33060609-33060628 | None:intergenic | 25.0% |
| ! | TAAACAAAATGATCAAACCA+AGG | + | chr5.4:33060309-33060328 | None:intergenic | 25.0% |
| ! | TATCATAAAATTGCAACATC+AGG | + | chr5.4:33060610-33060629 | None:intergenic | 25.0% |
| !! | TTAGGGCATATTTGAAATTA+CGG | - | chr5.4:33059435-33059454 | MS.gene53170:CDS | 25.0% |
| !!! | AAATAGTTTCCTTTTGACTT+TGG | + | chr5.4:33059028-33059047 | None:intergenic | 25.0% |
| !!! | ACTTTTTTATCCAAGTAGAT+TGG | - | chr5.4:33059411-33059430 | MS.gene53170:CDS | 25.0% |
| !!! | CTTGTTTCTTTTCTTTTTGT+TGG | - | chr5.4:33059326-33059345 | MS.gene53170:intron | 25.0% |
| ATATACATGATTCGTTATGC+AGG | + | chr5.4:33059861-33059880 | None:intergenic | 30.0% | |
| ATGTAATGAGTAAGGAAGAT+AGG | - | chr5.4:33059933-33059952 | MS.gene53170:intron | 30.0% | |
| ATGTCATGAAATCATGAGAA+TGG | - | chr5.4:33059363-33059382 | MS.gene53170:intron | 30.0% | |
| GAAAAAGCTAAACAAGATGA+TGG | - | chr5.4:33060165-33060184 | MS.gene53170:intron | 30.0% | |
| GATTACAAGGACTCATAATA+TGG | - | chr5.4:33059264-33059283 | MS.gene53170:intron | 30.0% | |
| GGTTGAAATTAGCTCATTAT+TGG | - | chr5.4:33060476-33060495 | MS.gene53170:CDS | 30.0% | |
| GTTAATATTGTTCACTCTAG+AGG | + | chr5.4:33059802-33059821 | None:intergenic | 30.0% | |
| TAAAATTTCGGGATTACATG+AGG | + | chr5.4:33059587-33059606 | None:intergenic | 30.0% | |
| TAATTGTTTAAGGATTGCTG+AGG | - | chr5.4:33059186-33059205 | MS.gene53170:intron | 30.0% | |
| TATTATGAGTCCTTGTAATC+TGG | + | chr5.4:33059264-33059283 | None:intergenic | 30.0% | |
| TGTAATGAGTAAGGAAGATA+GGG | - | chr5.4:33059934-33059953 | MS.gene53170:intron | 30.0% | |
| TTCATACTTACGAGTTATTC+TGG | - | chr5.4:33059732-33059751 | MS.gene53170:intron | 30.0% | |
| TTTACATTCTAATTGTCGCA+GGG | - | chr5.4:33059603-33059622 | MS.gene53170:intron | 30.0% | |
| ! | AACTTGACAGGTACAATTTT+TGG | - | chr5.4:33060250-33060269 | MS.gene53170:intron | 30.0% |
| ! | ACATATTTTTCTACGCACAA+CGG | + | chr5.4:33060435-33060454 | None:intergenic | 30.0% |
| ! | CTAATTTTGCCGTAAATATG+CGG | - | chr5.4:33060516-33060535 | MS.gene53170:CDS | 30.0% |
| ! | TTTTACATTCTAATTGTCGC+AGG | - | chr5.4:33059602-33059621 | MS.gene53170:intron | 30.0% |
| !! | ACCATTGATTTGTTTATCCA+CGG | + | chr5.4:33059824-33059843 | None:intergenic | 30.0% |
| !! | TAGAAGATCGACTTTTGAAA+TGG | - | chr5.4:33060455-33060474 | MS.gene53170:CDS | 30.0% |
| AAACTCCTAAACAATCTTGG+TGG | - | chr5.4:33059630-33059649 | MS.gene53170:CDS | 35.0% | |
| AACAAAGCTCTTGATCATCT+CGG | - | chr5.4:33060643-33060662 | MS.gene53170:CDS | 35.0% | |
| ACCGTGGATAAACAAATCAA+TGG | - | chr5.4:33059820-33059839 | MS.gene53170:intron | 35.0% | |
| AGAAAACCTGATGTAATCAC+CGG | + | chr5.4:33059705-33059724 | None:intergenic | 35.0% | |
| AGAGTGAACAATATTAACCG+TGG | - | chr5.4:33059804-33059823 | MS.gene53170:intron | 35.0% | |
| ATATTCGAAGTGATGCTTCA+AGG | - | chr5.4:33059209-33059228 | MS.gene53170:intron | 35.0% | |
| ATCAGATAACACATCCAAGA+AGG | - | chr5.4:33059910-33059929 | MS.gene53170:intron | 35.0% | |
| CAAGAAGGATGTAATGAGTA+AGG | - | chr5.4:33059925-33059944 | MS.gene53170:intron | 35.0% | |
| CTCAGCATAACACAACTATA+GGG | + | chr5.4:33060568-33060587 | None:intergenic | 35.0% | |
| CTTACTCATTACATCCTTCT+TGG | + | chr5.4:33059927-33059946 | None:intergenic | 35.0% | |
| GAGAAACTCCTAAACAATCT+TGG | - | chr5.4:33059627-33059646 | MS.gene53170:CDS | 35.0% | |
| TCTCAGCATAACACAACTAT+AGG | + | chr5.4:33060569-33060588 | None:intergenic | 35.0% | |
| TGATTCTATCAAACTCACCA+CGG | - | chr5.4:33059527-33059546 | MS.gene53170:intron | 35.0% | |
| TTCATGTGCAAATACGCATT+AGG | - | chr5.4:33059774-33059793 | MS.gene53170:intron | 35.0% | |
| ! | AAGGGTATGGCAATTAGTAT+GGG | - | chr5.4:33060222-33060241 | MS.gene53170:intron | 35.0% |
| ! | ACTAGAGAATCAAAGTGTTC+AGG | - | chr5.4:33059111-33059130 | MS.gene53170:intron | 35.0% |
| ! | ATTTGATTTCGCTAAGCATG+CGG | - | chr5.4:33060390-33060409 | MS.gene53170:CDS | 35.0% |
| !! | TACATCATTAGGAAGTACCT+TGG | - | chr5.4:33060289-33060308 | MS.gene53170:intron | 35.0% |
| !! | TATCCAAGTAGATTGGCTTA+GGG | - | chr5.4:33059418-33059437 | MS.gene53170:CDS | 35.0% |
| !! | TTATCCAAGTAGATTGGCTT+AGG | - | chr5.4:33059417-33059436 | MS.gene53170:CDS | 35.0% |
| !!! | ACATACGTCGATTTTCTGAT+AGG | + | chr5.4:33060032-33060051 | None:intergenic | 35.0% |
| !!! | GATGATCAAGAGCTTTGTTT+TGG | + | chr5.4:33060642-33060661 | None:intergenic | 35.0% |
| ACATGCCACCAAGATTGTTT+AGG | + | chr5.4:33059638-33059657 | None:intergenic | 40.0% | |
| CATTCCTGACCGCATATTTA+CGG | + | chr5.4:33060528-33060547 | None:intergenic | 40.0% | |
| GAAAACCTGATGTAATCACC+GGG | + | chr5.4:33059704-33059723 | None:intergenic | 40.0% | |
| GAGCTGAACAATCGAATGAA+AGG | - | chr5.4:33060679-33060698 | MS.gene53170:CDS | 40.0% | |
| GATATCTTGGGCGATTTGAA+GGG | - | chr5.4:33060204-33060223 | MS.gene53170:intron | 40.0% | |
| GGAAAACTATGCAGTGAACA+AGG | - | chr5.4:33059138-33059157 | MS.gene53170:intron | 40.0% | |
| TACCCTACTCAAATCCTTCT+CGG | + | chr5.4:33059299-33059318 | None:intergenic | 40.0% | |
| TCAGAACTCAGCGATATCTT+GGG | - | chr5.4:33060192-33060211 | MS.gene53170:intron | 40.0% | |
| TGATGCGTTATTTGAATCCG+TGG | + | chr5.4:33059547-33059566 | None:intergenic | 40.0% | |
| ! | ATGATGATGACGATGACGAT+TGG | - | chr5.4:33059050-33059069 | MS.gene53170:intron | 40.0% |
| ! | GAAGGGTATGGCAATTAGTA+TGG | - | chr5.4:33060221-33060240 | MS.gene53170:intron | 40.0% |
| ! | GAATCAAAGTGTTCAGGAGT+TGG | - | chr5.4:33059117-33059136 | MS.gene53170:intron | 40.0% |
| ! | TGATGATGACGATGACGATT+GGG | - | chr5.4:33059051-33059070 | MS.gene53170:intron | 40.0% |
| !!! | TTTCCTTTTGACTTTGGCAC+TGG | + | chr5.4:33059022-33059041 | None:intergenic | 40.0% |
| AAACCCTGGAAGCCAAAGAA+GGG | - | chr5.4:33059663-33059682 | MS.gene53170:CDS | 45.0% | |
| AAGGAAGATAGGGCAAAGCT+AGG | - | chr5.4:33059944-33059963 | MS.gene53170:CDS | 45.0% | |
| ACACCGAGAAGGATTTGAGT+AGG | - | chr5.4:33059293-33059312 | MS.gene53170:intron | 45.0% | |
| AGGAAGATAGGGCAAAGCTA+GGG | - | chr5.4:33059945-33059964 | MS.gene53170:CDS | 45.0% | |
| ATGCCCTAAGCCAATCTACT+TGG | + | chr5.4:33059424-33059443 | None:intergenic | 45.0% | |
| CACCGAGAAGGATTTGAGTA+GGG | - | chr5.4:33059294-33059313 | MS.gene53170:intron | 45.0% | |
| CGATATCTTGGGCGATTTGA+AGG | - | chr5.4:33060203-33060222 | MS.gene53170:intron | 45.0% | |
| CTACCAGTGCCAAAGTCAAA+AGG | - | chr5.4:33059016-33059035 | MS.gene53170:intron | 45.0% | |
| CTCAGAACTCAGCGATATCT+TGG | - | chr5.4:33060191-33060210 | MS.gene53170:intron | 45.0% | |
| GTATGGGAACTGAACTTGAC+AGG | - | chr5.4:33060238-33060257 | MS.gene53170:intron | 45.0% | |
| TAAACCCTGGAAGCCAAAGA+AGG | - | chr5.4:33059662-33059681 | MS.gene53170:CDS | 45.0% | |
| TCTGAAGAAGTTCGTCTAGC+TGG | + | chr5.4:33058989-33059008 | None:intergenic | 45.0% | |
| TTTGCCGTAAATATGCGGTC+AGG | - | chr5.4:33060521-33060540 | MS.gene53170:CDS | 45.0% | |
| ! | GATGATGACGATGACGATTG+GGG | - | chr5.4:33059052-33059071 | MS.gene53170:intron | 45.0% |
| ! | TTTCCCTTCTTTGGCTTCCA+GGG | + | chr5.4:33059669-33059688 | None:intergenic | 45.0% |
| !!! | CTTTTGACTTTGGCACTGGT+AGG | + | chr5.4:33059018-33059037 | None:intergenic | 45.0% |
| AAGAAAGCCTGCATCGTCAG+CGG | - | chr5.4:33059075-33059094 | MS.gene53170:intron | 50.0% | |
| AAGAAGGGAAAGGCGATCAC+AGG | - | chr5.4:33059678-33059697 | MS.gene53170:CDS | 50.0% | |
| AGCAGGGTGACCAGATTACA+AGG | - | chr5.4:33059251-33059270 | MS.gene53170:intron | 50.0% | |
| AGTTCGTCTAGCTGGAGTGA+TGG | + | chr5.4:33058981-33059000 | None:intergenic | 50.0% | |
| ATTTCGCTAAGCATGCGGTC+AGG | - | chr5.4:33060395-33060414 | MS.gene53170:CDS | 50.0% | |
| CTGGAAGCCAAAGAAGGGAA+AGG | - | chr5.4:33059668-33059687 | MS.gene53170:CDS | 50.0% | |
| CTTGACATGTTGCACCAGCA+GGG | - | chr5.4:33059235-33059254 | MS.gene53170:intron | 50.0% | |
| CTTGGGCGATTTGAAGGGTA+TGG | - | chr5.4:33060209-33060228 | MS.gene53170:intron | 50.0% | |
| GTGATCGCCTTTCCCTTCTT+TGG | + | chr5.4:33059678-33059697 | None:intergenic | 50.0% | |
| GTGGCATGTTCTCTAAACCC+TGG | - | chr5.4:33059649-33059668 | MS.gene53170:CDS | 50.0% | |
| TATGGTTGTCGACACCGAGA+AGG | - | chr5.4:33059282-33059301 | MS.gene53170:intron | 50.0% | |
| TCTTGACATGTTGCACCAGC+AGG | - | chr5.4:33059234-33059253 | MS.gene53170:intron | 50.0% | |
| TTGTAATCTGGTCACCCTGC+TGG | + | chr5.4:33059252-33059271 | None:intergenic | 50.0% | |
| ! | CTAGTAATTTGCGTGCACGC+TGG | + | chr5.4:33060711-33060730 | None:intergenic | 50.0% |
| ! | CTTTCCCTTCTTTGGCTTCC+AGG | + | chr5.4:33059670-33059689 | None:intergenic | 50.0% |
| ! | GTGATGGCTGTCGTCTTTTC+TGG | + | chr5.4:33058965-33058984 | None:intergenic | 50.0% |
| ! | TAATTTGCGTGCACGCTGGT+TGG | + | chr5.4:33060707-33060726 | None:intergenic | 50.0% |
| ! | TAGGCGCTGTCAGACTCATT+AGG | + | chr5.4:33060013-33060032 | None:intergenic | 50.0% |
| !! | AGGGTTAGCTCCTTTGCCTA+AGG | - | chr5.4:33059964-33059983 | MS.gene53170:CDS | 50.0% |
| !! | GGGTTAGCTCCTTTGCCTAA+GGG | - | chr5.4:33059965-33059984 | MS.gene53170:CDS | 50.0% |
| !! | TGACTTTGGCACTGGTAGGA+CGG | + | chr5.4:33059014-33059033 | None:intergenic | 50.0% |
| !!! | GGCTGTCGTCTTTTCTGGTT+CGG | + | chr5.4:33058960-33058979 | None:intergenic | 50.0% |
| !!! | GTCTTTTCTGGTTCGGTGGT+TGG | + | chr5.4:33058953-33058972 | None:intergenic | 50.0% |
| !!! | TGTCGTCTTTTCTGGTTCGG+TGG | + | chr5.4:33058957-33058976 | None:intergenic | 50.0% |
| !!! | TTTTCTGGTTCGGTGGTTGG+TGG | + | chr5.4:33058950-33058969 | None:intergenic | 50.0% |
| ACAGGCCCGGTGATTACATC+AGG | - | chr5.4:33059696-33059715 | MS.gene53170:CDS | 55.0% | |
| GCAGAACGTCCCTTAGGCAA+AGG | + | chr5.4:33059977-33059996 | None:intergenic | 55.0% | |
| GCATCGTCAGCGGCTTCAAA+AGG | - | chr5.4:33059085-33059104 | MS.gene53170:intron | 55.0% | |
| GCGCTGTCAGACTCATTAGG+AGG | + | chr5.4:33060010-33060029 | None:intergenic | 55.0% | |
| GTAGGAGCAGAACGTCCCTT+AGG | + | chr5.4:33059983-33060002 | None:intergenic | 55.0% | |
| GTCAGACTCATTAGGAGGCG+TGG | + | chr5.4:33060005-33060024 | None:intergenic | 55.0% | |
| TCGTCAGCGGCTTCAAAAGG+TGG | - | chr5.4:33059088-33059107 | MS.gene53170:intron | 55.0% | |
| ! | GACTCATTAGGAGGCGTGGT+AGG | + | chr5.4:33060001-33060020 | None:intergenic | 55.0% |
| ! | TTTGAAGCCGCTGACGATGC+AGG | + | chr5.4:33059085-33059104 | None:intergenic | 55.0% |
| !! | GACTTTGGCACTGGTAGGAC+GGG | + | chr5.4:33059013-33059032 | None:intergenic | 55.0% |
| GGGAAAGGCGATCACAGGCC+CGG | - | chr5.4:33059683-33059702 | MS.gene53170:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5.4 | gene | 33058923 | 33060738 | 33058923 | ID=MS.gene53170 |
| chr5.4 | mRNA | 33058923 | 33060738 | 33058923 | ID=MS.gene53170.t1;Parent=MS.gene53170 |
| chr5.4 | exon | 33060346 | 33060738 | 33060346 | ID=MS.gene53170.t1.exon1;Parent=MS.gene53170.t1 |
| chr5.4 | CDS | 33060346 | 33060738 | 33060346 | ID=cds.MS.gene53170.t1;Parent=MS.gene53170.t1 |
| chr5.4 | exon | 33059944 | 33060037 | 33059944 | ID=MS.gene53170.t1.exon2;Parent=MS.gene53170.t1 |
| chr5.4 | CDS | 33059944 | 33060037 | 33059944 | ID=cds.MS.gene53170.t1;Parent=MS.gene53170.t1 |
| chr5.4 | exon | 33059616 | 33059746 | 33059616 | ID=MS.gene53170.t1.exon3;Parent=MS.gene53170.t1 |
| chr5.4 | CDS | 33059616 | 33059746 | 33059616 | ID=cds.MS.gene53170.t1;Parent=MS.gene53170.t1 |
| chr5.4 | exon | 33059402 | 33059499 | 33059402 | ID=MS.gene53170.t1.exon4;Parent=MS.gene53170.t1 |
| chr5.4 | CDS | 33059402 | 33059499 | 33059402 | ID=cds.MS.gene53170.t1;Parent=MS.gene53170.t1 |
| chr5.4 | exon | 33058923 | 33059022 | 33058923 | ID=MS.gene53170.t1.exon5;Parent=MS.gene53170.t1 |
| chr5.4 | CDS | 33058923 | 33059022 | 33058923 | ID=cds.MS.gene53170.t1;Parent=MS.gene53170.t1 |
| Gene Sequence |
| Protein sequence |
