Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene55383.t1 | XP_003614024.1 | 98.1 | 209 | 4 | 0 | 63 | 271 | 63 | 271 | 2.60E-108 | 401.7 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene55383.t1 | Q9S7P9 | 64.1 | 209 | 75 | 0 | 63 | 271 | 92 | 300 | 2.3e-68 | 260.4 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene55383.t1 | G7JXY1 | 98.1 | 209 | 4 | 0 | 63 | 271 | 63 | 271 | 1.9e-108 | 401.7 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene034736 | MS.gene55383 | PPI |
| MS.gene33736 | MS.gene55383 | PPI |
| MS.gene01343 | MS.gene55383 | PPI |
| MS.gene41022 | MS.gene55383 | PPI |
| MS.gene32192 | MS.gene55383 | PPI |
| MS.gene047508 | MS.gene55383 | PPI |
| MS.gene46442 | MS.gene55383 | PPI |
| MS.gene002374 | MS.gene55383 | PPI |
| MS.gene063476 | MS.gene55383 | PPI |
| MS.gene044431 | MS.gene55383 | PPI |
| MS.gene01756 | MS.gene55383 | PPI |
| MS.gene69311 | MS.gene55383 | PPI |
| MS.gene035217 | MS.gene55383 | PPI |
| MS.gene46918 | MS.gene55383 | PPI |
| MS.gene052542 | MS.gene55383 | PPI |
| MS.gene01347 | MS.gene55383 | PPI |
| MS.gene033077 | MS.gene55383 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene55383.t1 | MTR_5g043850 | 97.786 | 271 | 6 | 0 | 1 | 271 | 1 | 271 | 0.0 | 545 |
| MS.gene55383.t1 | MTR_4g109310 | 56.432 | 241 | 91 | 1 | 45 | 271 | 60 | 300 | 3.82e-90 | 269 |
| MS.gene55383.t1 | MTR_8g021950 | 58.852 | 209 | 86 | 0 | 62 | 270 | 18 | 226 | 1.10e-85 | 255 |
| MS.gene55383.t1 | MTR_3g023720 | 55.714 | 210 | 93 | 0 | 62 | 271 | 87 | 296 | 5.84e-78 | 238 |
| MS.gene55383.t1 | MTR_3g023720 | 54.483 | 145 | 66 | 0 | 62 | 206 | 87 | 231 | 6.97e-50 | 165 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene55383.t1 | AT1G13890 | 62.319 | 276 | 86 | 4 | 1 | 271 | 1 | 263 | 2.89e-111 | 322 |
| MS.gene55383.t1 | AT1G13890 | 62.319 | 276 | 86 | 4 | 1 | 271 | 1 | 263 | 2.89e-111 | 322 |
| MS.gene55383.t1 | AT5G61210 | 53.903 | 269 | 114 | 1 | 13 | 271 | 32 | 300 | 1.30e-92 | 276 |
| MS.gene55383.t1 | AT5G61210 | 53.903 | 269 | 114 | 1 | 13 | 271 | 32 | 300 | 1.30e-92 | 276 |
| MS.gene55383.t1 | AT5G07880 | 54.054 | 222 | 93 | 3 | 52 | 271 | 37 | 251 | 2.41e-75 | 230 |
| MS.gene55383.t1 | AT5G07880 | 54.054 | 222 | 93 | 3 | 52 | 271 | 37 | 251 | 2.41e-75 | 230 |
Find 73 sgRNAs with CRISPR-Local
Find 112 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTTTCCCTTCTTTGGCTTCC+AGG | 0.182763 | 5.2:+33883517 | None:intergenic |
| CTTACTCATTACATCCTTCT+TGG | 0.197030 | 5.2:+33883260 | None:intergenic |
| GAAGGGTATGGCAATTAGTA+TGG | 0.241588 | 5.2:-33882963 | MS.gene55383:CDS |
| GTGATCGCCTTTCCCTTCTT+TGG | 0.255426 | 5.2:+33883509 | None:intergenic |
| ACAGTGTTAATAATTGTTTA+AGG | 0.255903 | 5.2:-33883780 | MS.gene55383:CDS |
| CTCCTACACGTGAAAATGTT+TGG | 0.317144 | 5.2:-33884048 | None:intergenic |
| ATGTAATGAGTAAGGAAGAT+AGG | 0.317440 | 5.2:-33883251 | MS.gene55383:CDS |
| CTCAGAACTCAGCGATATCT+TGG | 0.328955 | 5.2:-33882993 | MS.gene55383:CDS |
| GATGATCAAGAGCTTTGTTT+TGG | 0.338749 | 5.2:+33882569 | None:intergenic |
| ACATGCCACCAAGATTGTTT+AGG | 0.391915 | 5.2:+33883549 | None:intergenic |
| CGATATCTTGGGCGATTTGA+AGG | 0.397316 | 5.2:-33882981 | MS.gene55383:CDS |
| TATTATGAGTCCTTGTAATC+TGG | 0.399198 | 5.2:+33883695 | None:intergenic |
| GATTACAAGGACTCATAATA+TGG | 0.402221 | 5.2:-33883692 | MS.gene55383:CDS |
| TGATGATGATGACGACGATT+GGG | 0.405432 | 5.2:-33883905 | MS.gene55383:CDS |
| TCCGAAGAAGTTCGTCTAGC+TGG | 0.411811 | 5.2:+33883970 | None:intergenic |
| TACCCTACTCAAATCCTTCT+CGG | 0.421619 | 5.2:+33883660 | None:intergenic |
| ACTAGAGAATCAAAGTGTTC+AGG | 0.432628 | 5.2:-33883845 | MS.gene55383:CDS |
| TTTCCCTTCTTTGGCTTCCA+GGG | 0.450858 | 5.2:+33883518 | None:intergenic |
| TCCAGCTAGACGAACTTCTT+CGG | 0.457258 | 5.2:-33883971 | MS.gene55383:CDS |
| AGGGTTAGCTCCTTTGCCTA+AGG | 0.460085 | 5.2:-33883220 | MS.gene55383:CDS |
| TTTGAAGCCGCTGACGATGC+AGG | 0.466799 | 5.2:+33883874 | None:intergenic |
| GCATCGTCAGCGGCTTCAAA+AGG | 0.467576 | 5.2:-33883871 | MS.gene55383:CDS |
| CAAGAAGGATGTAATGAGTA+AGG | 0.469224 | 5.2:-33883259 | MS.gene55383:CDS |
| TCTTGACATGTTGCACCAGC+AGG | 0.471296 | 5.2:-33883722 | MS.gene55383:CDS |
| ACAGGCCCGGTGATTACATC+AGG | 0.473489 | 5.2:-33883488 | MS.gene55383:intron |
| TTGTAATCTGGTCACCCTGC+TGG | 0.476053 | 5.2:+33883707 | None:intergenic |
| GAATCAAAGTGTTCAGGAGT+TGG | 0.476538 | 5.2:-33883839 | MS.gene55383:CDS |
| ATATTCGAAGTGATGCTTCA+AGG | 0.481846 | 5.2:-33883747 | MS.gene55383:CDS |
| CTTGGGCGATTTGAAGGGTA+TGG | 0.482056 | 5.2:-33882975 | MS.gene55383:CDS |
| GACTTTGGCACTGGTAGGAC+GGG | 0.485010 | 5.2:+33883946 | None:intergenic |
| TAGGCACTGTCAGACTCATT+AGG | 0.486687 | 5.2:+33883174 | None:intergenic |
| TGTAATGAGTAAGGAAGATA+GGG | 0.489900 | 5.2:-33883250 | MS.gene55383:CDS |
| GGGAAAGGCGATCACAGGCC+CGG | 0.490693 | 5.2:-33883501 | MS.gene55383:CDS |
| AAGGAAGATAGGGCAAAGCT+AGG | 0.496533 | 5.2:-33883240 | MS.gene55383:CDS |
| TAAACCCTGGAAGCCAAAGA+AGG | 0.503183 | 5.2:-33883522 | MS.gene55383:CDS |
| TCAGAACTCAGCGATATCTT+GGG | 0.512833 | 5.2:-33882992 | MS.gene55383:CDS |
| TAATTTGCGTGCACGCTGGT+TGG | 0.514052 | 5.2:+33882504 | None:intergenic |
| CTACCAGTGCCAAAGTCAAA+AGG | 0.516003 | 5.2:-33883940 | MS.gene55383:CDS |
| TGACTTTGGCACTGGTAGGA+CGG | 0.522101 | 5.2:+33883945 | None:intergenic |
| ATGATGATGATGACGACGAT+TGG | 0.527333 | 5.2:-33883906 | MS.gene55383:CDS |
| AAGAAGGGAAAGGCGATCAC+AGG | 0.534683 | 5.2:-33883506 | MS.gene55383:CDS |
| GGGTTAGCTCCTTTGCCTAA+GGG | 0.540730 | 5.2:-33883219 | MS.gene55383:CDS |
| GATATCTTGGGCGATTTGAA+GGG | 0.544554 | 5.2:-33882980 | MS.gene55383:CDS |
| AGCAGGGTGACCAGATTACA+AGG | 0.546881 | 5.2:-33883705 | MS.gene55383:CDS |
| CTAGTAATTTGCGTGCACGC+TGG | 0.547633 | 5.2:+33882500 | None:intergenic |
| GTATGGGAACTGAACTTGAC+AGG | 0.548017 | 5.2:-33882946 | MS.gene55383:intron |
| AAGGGTATGGCAATTAGTAT+GGG | 0.550887 | 5.2:-33882962 | MS.gene55383:CDS |
| AACAAAGCTCTTGATCATCT+CGG | 0.558049 | 5.2:-33882565 | MS.gene55383:CDS |
| GCAGAACGTCCCTTAGGCAA+AGG | 0.562412 | 5.2:+33883210 | None:intergenic |
| AGGAAGATAGGGCAAAGCTA+GGG | 0.563180 | 5.2:-33883239 | MS.gene55383:CDS |
| AGAAAACCTGATGTAATCAC+CGG | 0.570974 | 5.2:+33883482 | None:intergenic |
| ATCAGATAACACATCCAAGA+AGG | 0.572526 | 5.2:-33883274 | MS.gene55383:intron |
| TCGTCAGCGGCTTCAAAAGG+TGG | 0.573044 | 5.2:-33883868 | MS.gene55383:CDS |
| GGAAAACTATGCAGTGAACA+AGG | 0.575724 | 5.2:-33883818 | MS.gene55383:CDS |
| CTGGAAGCCAAAGAAGGGAA+AGG | 0.585814 | 5.2:-33883516 | MS.gene55383:CDS |
| CACCGAGAAGGATTTGAGTA+GGG | 0.586800 | 5.2:-33883662 | MS.gene55383:intron |
| AGTTCGTCTAGCTGGAGTGA+TGG | 0.587136 | 5.2:+33883978 | None:intergenic |
| AAACTCCTAAACAATCTTGG+TGG | 0.591477 | 5.2:-33883554 | MS.gene55383:CDS |
| GTCAGACTCATTAGGAGGCG+TGG | 0.594482 | 5.2:+33883182 | None:intergenic |
| ACACCGAGAAGGATTTGAGT+AGG | 0.594649 | 5.2:-33883663 | MS.gene55383:CDS |
| AAACCCTGGAAGCCAAAGAA+GGG | 0.600415 | 5.2:-33883521 | MS.gene55383:CDS |
| GATGATGATGACGACGATTG+GGG | 0.605563 | 5.2:-33883904 | MS.gene55383:CDS |
| GTGGCATGTTCTCTAAACCC+TGG | 0.606426 | 5.2:-33883535 | MS.gene55383:CDS |
| GTAGGAGCAGAACGTCCCTT+AGG | 0.612516 | 5.2:+33883204 | None:intergenic |
| GAGCTGAACAATCGAATGAA+AGG | 0.615161 | 5.2:-33882529 | MS.gene55383:CDS |
| GACTCATTAGGAGGCGTGGT+AGG | 0.617743 | 5.2:+33883186 | None:intergenic |
| AAGAAAGCCTGCATCGTCAG+CGG | 0.627229 | 5.2:-33883881 | MS.gene55383:CDS |
| TATGGTTGTCGACACCGAGA+AGG | 0.631327 | 5.2:-33883674 | MS.gene55383:CDS |
| TCTAGCTGGAGTGATGGCTG+TGG | 0.642668 | 5.2:+33883984 | None:intergenic |
| CTTGACATGTTGCACCAGCA+GGG | 0.647892 | 5.2:-33883721 | MS.gene55383:CDS |
| GAAAACCTGATGTAATCACC+GGG | 0.660551 | 5.2:+33883483 | None:intergenic |
| GCACTGTCAGACTCATTAGG+AGG | 0.663531 | 5.2:+33883177 | None:intergenic |
| TAATTGTTTAAGGATTGCTG+AGG | 0.664442 | 5.2:-33883770 | MS.gene55383:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ACTAATATTATAATTGAATT+TGG | - | chr5.2:33883222-33883241 | MS.gene55383:CDS | 10.0% |
| !! | ACAGTGTTAATAATTGTTTA+AGG | - | chr5.2:33882745-33882764 | MS.gene55383:intron | 20.0% |
| !! | TTTAATCATTGTACATCATT+AGG | - | chr5.2:33883619-33883638 | MS.gene55383:intron | 20.0% |
| !!! | AGAGTTAGAATGTAAAATTT+TGG | + | chr5.2:33882940-33882959 | None:intergenic | 20.0% |
| !!! | GAGTTAGAATGTAAAATTTT+GGG | + | chr5.2:33882939-33882958 | None:intergenic | 20.0% |
| !!! | TATTGGATTTTATTTTTGAG+AGG | - | chr5.2:33883836-33883855 | MS.gene55383:CDS | 20.0% |
| ! | ATAATAACTCATAAGCATGA+AGG | + | chr5.2:33883074-33883093 | None:intergenic | 25.0% |
| ! | TAAACAAAATGATCAAACCA+AGG | + | chr5.2:33883650-33883669 | None:intergenic | 25.0% |
| ! | TTCATGCTTATGAGTTATTA+TGG | - | chr5.2:33883073-33883092 | MS.gene55383:intron | 25.0% |
| !!! | AAATAGTTTCCTTTTGACTT+TGG | + | chr5.2:33882597-33882616 | None:intergenic | 25.0% |
| !!! | ATATACATGATTTGTTATGC+AGG | + | chr5.2:33883202-33883221 | None:intergenic | 25.0% |
| !!! | CTTGTTTCTTTTCTTTTTGT+TGG | - | chr5.2:33882895-33882914 | MS.gene55383:intron | 25.0% |
| ATGTAATGAGTAAGGAAGAT+AGG | - | chr5.2:33883274-33883293 | MS.gene55383:intron | 30.0% | |
| GAAAAACTCCTAAACAATCT+TGG | - | chr5.2:33882968-33882987 | MS.gene55383:CDS | 30.0% | |
| GAAAAAGCTAAACAAGATGA+TGG | - | chr5.2:33883506-33883525 | MS.gene55383:CDS | 30.0% | |
| GATTACAAGGACTCATAATA+TGG | - | chr5.2:33882833-33882852 | MS.gene55383:intron | 30.0% | |
| GGTTGAAATTAGCTCATTAT+TGG | - | chr5.2:33883819-33883838 | MS.gene55383:CDS | 30.0% | |
| GTTAATATTGTTCACTCTAG+AGG | + | chr5.2:33883143-33883162 | None:intergenic | 30.0% | |
| TAATTGTTTAAGGATTGCTG+AGG | - | chr5.2:33882755-33882774 | MS.gene55383:intron | 30.0% | |
| TATTATGAGTCCTTGTAATC+TGG | + | chr5.2:33882833-33882852 | None:intergenic | 30.0% | |
| TGTAATGAGTAAGGAAGATA+GGG | - | chr5.2:33883275-33883294 | MS.gene55383:intron | 30.0% | |
| TTACAACATTCCGTTCTTTA+CGG | + | chr5.2:33883871-33883890 | None:intergenic | 30.0% | |
| TTTACATTCTAACTCTCACA+GGG | - | chr5.2:33882944-33882963 | MS.gene55383:intron | 30.0% | |
| ! | AACTTGACAGGTACAATTTT+TGG | - | chr5.2:33883591-33883610 | MS.gene55383:intron | 30.0% |
| ! | ACATATTTTTCTACGCACAA+CGG | + | chr5.2:33883776-33883795 | None:intergenic | 30.0% |
| ! | TTTTACATTCTAACTCTCAC+AGG | - | chr5.2:33882943-33882962 | MS.gene55383:intron | 30.0% |
| !! | ACCATTGATTTGTTTATCCA+CGG | + | chr5.2:33883165-33883184 | None:intergenic | 30.0% |
| !!! | ACATACGTCGATTTTTTGAT+AGG | + | chr5.2:33883373-33883392 | None:intergenic | 30.0% |
| AAACTCCTAAACAATCTTGG+TGG | - | chr5.2:33882971-33882990 | MS.gene55383:CDS | 35.0% | |
| AACAAAGCTCTTGATCATCT+CGG | - | chr5.2:33883960-33883979 | MS.gene55383:CDS | 35.0% | |
| ACCGTGGATAAACAAATCAA+TGG | - | chr5.2:33883161-33883180 | MS.gene55383:CDS | 35.0% | |
| AGAAAACCTGATGTAATCAC+CGG | + | chr5.2:33883046-33883065 | None:intergenic | 35.0% | |
| AGAGTGAACAATATTAACCG+TGG | - | chr5.2:33883145-33883164 | MS.gene55383:intron | 35.0% | |
| ATATTCGAAGTGATGCTTCA+AGG | - | chr5.2:33882778-33882797 | MS.gene55383:intron | 35.0% | |
| ATCAGATAACACATCCAAGA+AGG | - | chr5.2:33883251-33883270 | MS.gene55383:CDS | 35.0% | |
| CAAGAAGGATGTAATGAGTA+AGG | - | chr5.2:33883266-33883285 | MS.gene55383:CDS | 35.0% | |
| CTCAGCATAACACAACTATA+GGG | + | chr5.2:33883905-33883924 | None:intergenic | 35.0% | |
| CTTACTCATTACATCCTTCT+TGG | + | chr5.2:33883268-33883287 | None:intergenic | 35.0% | |
| TCTCAGCATAACACAACTAT+AGG | + | chr5.2:33883906-33883925 | None:intergenic | 35.0% | |
| TTCATGTGCAAATACGCATT+AGG | - | chr5.2:33883115-33883134 | MS.gene55383:intron | 35.0% | |
| ! | AAGGGTATGGCAATTAGTAT+GGG | - | chr5.2:33883563-33883582 | MS.gene55383:CDS | 35.0% |
| ! | ACTAGAGAATCAAAGTGTTC+AGG | - | chr5.2:33882680-33882699 | MS.gene55383:intron | 35.0% |
| ! | ATTTGATTTCGCTAAGCATG+CGG | - | chr5.2:33883731-33883750 | MS.gene55383:CDS | 35.0% |
| ! | GCTAATTTTGCCGTAAAGAA+CGG | - | chr5.2:33883858-33883877 | MS.gene55383:CDS | 35.0% |
| !! | GAAGAGATCGACTTTTGAAA+TGG | - | chr5.2:33883798-33883817 | MS.gene55383:CDS | 35.0% |
| !! | TACATCATTAGGAAGTACCT+TGG | - | chr5.2:33883630-33883649 | MS.gene55383:intron | 35.0% |
| !!! | GATGATCAAGAGCTTTGTTT+TGG | + | chr5.2:33883959-33883978 | None:intergenic | 35.0% |
| ACATGCCACCAAGATTGTTT+AGG | + | chr5.2:33882979-33882998 | None:intergenic | 40.0% | |
| GAAAACCTGATGTAATCACC+GGG | + | chr5.2:33883045-33883064 | None:intergenic | 40.0% | |
| GAGCTGAACAATCGAATGAA+AGG | - | chr5.2:33883996-33884015 | MS.gene55383:CDS | 40.0% | |
| GATATCTTGGGCGATTTGAA+GGG | - | chr5.2:33883545-33883564 | MS.gene55383:CDS | 40.0% | |
| GGAAAACTATGCAGTGAACA+AGG | - | chr5.2:33882707-33882726 | MS.gene55383:intron | 40.0% | |
| TACCCTACTCAAATCCTTCT+CGG | + | chr5.2:33882868-33882887 | None:intergenic | 40.0% | |
| TCAGAACTCAGCGATATCTT+GGG | - | chr5.2:33883533-33883552 | MS.gene55383:CDS | 40.0% | |
| ! | ATGATGATGATGACGACGAT+TGG | - | chr5.2:33882619-33882638 | MS.gene55383:intron | 40.0% |
| ! | GAAGGGTATGGCAATTAGTA+TGG | - | chr5.2:33883562-33883581 | MS.gene55383:CDS | 40.0% |
| ! | GAATCAAAGTGTTCAGGAGT+TGG | - | chr5.2:33882686-33882705 | MS.gene55383:intron | 40.0% |
| ! | TGATGATGATGACGACGATT+GGG | - | chr5.2:33882620-33882639 | MS.gene55383:intron | 40.0% |
| !!! | TTTCCTTTTGACTTTGGCAC+TGG | + | chr5.2:33882591-33882610 | None:intergenic | 40.0% |
| !!! | TTTGTTTTGGCTGCAACATC+AGG | + | chr5.2:33883946-33883965 | None:intergenic | 40.0% |
| AAACCCTGGAAGCCAAAGAA+GGG | - | chr5.2:33883004-33883023 | MS.gene55383:CDS | 45.0% | |
| AAGGAAGATAGGGCAAAGCT+AGG | - | chr5.2:33883285-33883304 | MS.gene55383:intron | 45.0% | |
| ACACCGAGAAGGATTTGAGT+AGG | - | chr5.2:33882862-33882881 | MS.gene55383:intron | 45.0% | |
| AGGAAGATAGGGCAAAGCTA+GGG | - | chr5.2:33883286-33883305 | MS.gene55383:intron | 45.0% | |
| CACCGAGAAGGATTTGAGTA+GGG | - | chr5.2:33882863-33882882 | MS.gene55383:intron | 45.0% | |
| CGATATCTTGGGCGATTTGA+AGG | - | chr5.2:33883544-33883563 | MS.gene55383:CDS | 45.0% | |
| CTACCAGTGCCAAAGTCAAA+AGG | - | chr5.2:33882585-33882604 | MS.gene55383:intron | 45.0% | |
| CTCAGAACTCAGCGATATCT+TGG | - | chr5.2:33883532-33883551 | MS.gene55383:CDS | 45.0% | |
| GTATGGGAACTGAACTTGAC+AGG | - | chr5.2:33883579-33883598 | MS.gene55383:intron | 45.0% | |
| TAAACCCTGGAAGCCAAAGA+AGG | - | chr5.2:33883003-33883022 | MS.gene55383:CDS | 45.0% | |
| TCCAGCTAGACGAACTTCTT+CGG | - | chr5.2:33882554-33882573 | MS.gene55383:CDS | 45.0% | |
| ! | GATGATGATGACGACGATTG+GGG | - | chr5.2:33882621-33882640 | MS.gene55383:intron | 45.0% |
| ! | TAGGCACTGTCAGACTCATT+AGG | + | chr5.2:33883354-33883373 | None:intergenic | 45.0% |
| ! | TTTCCCTTCTTTGGCTTCCA+GGG | + | chr5.2:33883010-33883029 | None:intergenic | 45.0% |
| !!! | CTTTTGACTTTGGCACTGGT+AGG | + | chr5.2:33882587-33882606 | None:intergenic | 45.0% |
| AAGAAAGCCTGCATCGTCAG+CGG | - | chr5.2:33882644-33882663 | MS.gene55383:intron | 50.0% | |
| AAGAAGGGAAAGGCGATCAC+AGG | - | chr5.2:33883019-33883038 | MS.gene55383:CDS | 50.0% | |
| AGCAGGGTGACCAGATTACA+AGG | - | chr5.2:33882820-33882839 | MS.gene55383:intron | 50.0% | |
| AGTTCGTCTAGCTGGAGTGA+TGG | + | chr5.2:33882550-33882569 | None:intergenic | 50.0% | |
| ATTTCGCTAAGCATGCGGTC+AGG | - | chr5.2:33883736-33883755 | MS.gene55383:CDS | 50.0% | |
| CTGGAAGCCAAAGAAGGGAA+AGG | - | chr5.2:33883009-33883028 | MS.gene55383:CDS | 50.0% | |
| CTTGACATGTTGCACCAGCA+GGG | - | chr5.2:33882804-33882823 | MS.gene55383:intron | 50.0% | |
| CTTGGGCGATTTGAAGGGTA+TGG | - | chr5.2:33883550-33883569 | MS.gene55383:CDS | 50.0% | |
| GCACTGTCAGACTCATTAGG+AGG | + | chr5.2:33883351-33883370 | None:intergenic | 50.0% | |
| GTGATCGCCTTTCCCTTCTT+TGG | + | chr5.2:33883019-33883038 | None:intergenic | 50.0% | |
| GTGGCATGTTCTCTAAACCC+TGG | - | chr5.2:33882990-33883009 | MS.gene55383:CDS | 50.0% | |
| TATGGTTGTCGACACCGAGA+AGG | - | chr5.2:33882851-33882870 | MS.gene55383:intron | 50.0% | |
| TCCGAAGAAGTTCGTCTAGC+TGG | + | chr5.2:33882558-33882577 | None:intergenic | 50.0% | |
| TCTTGACATGTTGCACCAGC+AGG | - | chr5.2:33882803-33882822 | MS.gene55383:intron | 50.0% | |
| TTGTAATCTGGTCACCCTGC+TGG | + | chr5.2:33882821-33882840 | None:intergenic | 50.0% | |
| ! | CTAGTAATTTGCGTGCACGC+TGG | + | chr5.2:33884028-33884047 | None:intergenic | 50.0% |
| ! | CTTTCCCTTCTTTGGCTTCC+AGG | + | chr5.2:33883011-33883030 | None:intergenic | 50.0% |
| ! | GTGATGGCTGTGGTCTTTTC+TGG | + | chr5.2:33882534-33882553 | None:intergenic | 50.0% |
| ! | TAATTTGCGTGCACGCTGGT+TGG | + | chr5.2:33884024-33884043 | None:intergenic | 50.0% |
| !! | AGGGTTAGCTCCTTTGCCTA+AGG | - | chr5.2:33883305-33883324 | MS.gene55383:intron | 50.0% |
| !! | GGGTTAGCTCCTTTGCCTAA+GGG | - | chr5.2:33883306-33883325 | MS.gene55383:intron | 50.0% |
| !! | TGACTTTGGCACTGGTAGGA+CGG | + | chr5.2:33882583-33882602 | None:intergenic | 50.0% |
| !!! | GGCTGTGGTCTTTTCTGGTT+CGG | + | chr5.2:33882529-33882548 | None:intergenic | 50.0% |
| !!! | GTCTTTTCTGGTTCGGTGGT+TGG | + | chr5.2:33882522-33882541 | None:intergenic | 50.0% |
| !!! | TGTGGTCTTTTCTGGTTCGG+TGG | + | chr5.2:33882526-33882545 | None:intergenic | 50.0% |
| !!! | TTTTCTGGTTCGGTGGTTGG+TGG | + | chr5.2:33882519-33882538 | None:intergenic | 50.0% |
| ACAGGCCCGGTGATTACATC+AGG | - | chr5.2:33883037-33883056 | MS.gene55383:intron | 55.0% | |
| GCAGAACGTCCCTTAGGCAA+AGG | + | chr5.2:33883318-33883337 | None:intergenic | 55.0% | |
| GCATCGTCAGCGGCTTCAAA+AGG | - | chr5.2:33882654-33882673 | MS.gene55383:intron | 55.0% | |
| GTAGGAGCAGAACGTCCCTT+AGG | + | chr5.2:33883324-33883343 | None:intergenic | 55.0% | |
| GTCAGACTCATTAGGAGGCG+TGG | + | chr5.2:33883346-33883365 | None:intergenic | 55.0% | |
| TCGTCAGCGGCTTCAAAAGG+TGG | - | chr5.2:33882657-33882676 | MS.gene55383:intron | 55.0% | |
| TCTAGCTGGAGTGATGGCTG+TGG | + | chr5.2:33882544-33882563 | None:intergenic | 55.0% | |
| ! | GACTCATTAGGAGGCGTGGT+AGG | + | chr5.2:33883342-33883361 | None:intergenic | 55.0% |
| ! | TTTGAAGCCGCTGACGATGC+AGG | + | chr5.2:33882654-33882673 | None:intergenic | 55.0% |
| !! | GACTTTGGCACTGGTAGGAC+GGG | + | chr5.2:33882582-33882601 | None:intergenic | 55.0% |
| GGGAAAGGCGATCACAGGCC+CGG | - | chr5.2:33883024-33883043 | MS.gene55383:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5.2 | gene | 33882492 | 33884055 | 33882492 | ID=MS.gene55383 |
| chr5.2 | mRNA | 33882492 | 33884055 | 33882492 | ID=MS.gene55383.t1;Parent=MS.gene55383 |
| chr5.2 | exon | 33883663 | 33884055 | 33883663 | ID=MS.gene55383.t1.exon1;Parent=MS.gene55383.t1 |
| chr5.2 | CDS | 33883663 | 33884055 | 33883663 | ID=cds.MS.gene55383.t1;Parent=MS.gene55383.t1 |
| chr5.2 | exon | 33883489 | 33883582 | 33883489 | ID=MS.gene55383.t1.exon2;Parent=MS.gene55383.t1 |
| chr5.2 | CDS | 33883489 | 33883582 | 33883489 | ID=cds.MS.gene55383.t1;Parent=MS.gene55383.t1 |
| chr5.2 | exon | 33883161 | 33883291 | 33883161 | ID=MS.gene55383.t1.exon3;Parent=MS.gene55383.t1 |
| chr5.2 | CDS | 33883161 | 33883291 | 33883161 | ID=cds.MS.gene55383.t1;Parent=MS.gene55383.t1 |
| chr5.2 | exon | 33882947 | 33883044 | 33882947 | ID=MS.gene55383.t1.exon4;Parent=MS.gene55383.t1 |
| chr5.2 | CDS | 33882947 | 33883044 | 33882947 | ID=cds.MS.gene55383.t1;Parent=MS.gene55383.t1 |
| chr5.2 | exon | 33882492 | 33882591 | 33882492 | ID=MS.gene55383.t1.exon5;Parent=MS.gene55383.t1 |
| chr5.2 | CDS | 33882492 | 33882591 | 33882492 | ID=cds.MS.gene55383.t1;Parent=MS.gene55383.t1 |
| Gene Sequence |
| Protein sequence |
