Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene035175.t1 | XP_003630676.1 | 97.2 | 316 | 9 | 0 | 1 | 316 | 1 | 316 | 1.70E-183 | 651.7 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene035175.t1 | O82200 | 77.3 | 317 | 71 | 1 | 1 | 316 | 1 | 317 | 6.8e-149 | 528.1 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene035175.t1 | G7LJN9 | 97.2 | 316 | 9 | 0 | 1 | 316 | 1 | 316 | 1.2e-183 | 651.7 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene035175 | MS.gene36707 | PPI |
| MS.gene011102 | MS.gene035175 | PPI |
| MS.gene072181 | MS.gene035175 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene035175.t1 | MTR_8g102150 | 97.152 | 316 | 9 | 0 | 1 | 316 | 1 | 316 | 0.0 | 642 |
| MS.gene035175.t1 | MTR_8g015220 | 74.448 | 317 | 68 | 3 | 1 | 316 | 1 | 305 | 6.19e-175 | 486 |
| MS.gene035175.t1 | MTR_8g015220 | 72.598 | 281 | 64 | 3 | 1 | 280 | 1 | 269 | 5.63e-150 | 422 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene035175.t1 | AT2G19800 | 77.287 | 317 | 71 | 1 | 1 | 316 | 1 | 317 | 0.0 | 518 |
| MS.gene035175.t1 | AT4G26260 | 78.302 | 318 | 67 | 1 | 1 | 316 | 1 | 318 | 0.0 | 513 |
| MS.gene035175.t1 | AT4G26260 | 78.438 | 320 | 62 | 3 | 1 | 316 | 1 | 317 | 0.0 | 510 |
| MS.gene035175.t1 | AT5G56640 | 77.778 | 297 | 64 | 2 | 22 | 316 | 18 | 314 | 1.58e-173 | 483 |
| MS.gene035175.t1 | AT5G56640 | 80.000 | 280 | 55 | 1 | 38 | 316 | 5 | 284 | 2.66e-170 | 474 |
| MS.gene035175.t1 | AT1G14520 | 70.807 | 322 | 77 | 3 | 1 | 316 | 1 | 311 | 8.20e-168 | 469 |
| MS.gene035175.t1 | AT1G14520 | 70.807 | 322 | 77 | 3 | 1 | 316 | 1 | 311 | 8.20e-168 | 469 |
| MS.gene035175.t1 | AT1G14520 | 71.562 | 320 | 76 | 4 | 1 | 316 | 1 | 309 | 2.09e-167 | 468 |
| MS.gene035175.t1 | AT1G14520 | 70.701 | 314 | 75 | 3 | 1 | 308 | 1 | 303 | 9.85e-161 | 452 |
Find 63 sgRNAs with CRISPR-Local
Find 127 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATTCTTCTGCTTCCTAAATT+TGG | 0.129202 | 5.3:-35073962 | MS.gene035175:CDS |
| TGAGGTAATTCACCAAATTT+AGG | 0.223539 | 5.3:+35073950 | None:intergenic |
| TGGCCAAATGAATTGATTTC+AGG | 0.232542 | 5.3:+35074704 | None:intergenic |
| ACGAAAATGCTTACGGTAAA+AGG | 0.245636 | 5.3:+35073257 | None:intergenic |
| ACAAAGCAGAAATGAGTATA+TGG | 0.246822 | 5.3:-35074339 | MS.gene035175:CDS |
| TAAGCAGGGGATTTGATATC+AGG | 0.289677 | 5.3:+35073632 | None:intergenic |
| CATTTGACTGCTCTCATTCA+TGG | 0.300205 | 5.3:-35074190 | MS.gene035175:intron |
| TCAATAAGTGATAGATAATA+TGG | 0.308416 | 5.3:+35072924 | None:intergenic |
| GAAGAAAGTGAAAGGCAAAA+AGG | 0.312701 | 5.3:-35074553 | MS.gene035175:CDS |
| ATTCATTTGGCCATGCCTTC+AGG | 0.318144 | 5.3:-35074694 | MS.gene035175:intron |
| GTGCAGGTTGCTAAGGAAAA+TGG | 0.342888 | 5.3:-35073324 | MS.gene035175:intron |
| TGCTTACAAAATCATATGTT+TGG | 0.344683 | 5.3:+35074497 | None:intergenic |
| TATCACCATCTAAGCTTTGC+TGG | 0.359991 | 5.3:+35072798 | None:intergenic |
| ATTTCCCAGCAAAGCTTAGA+TGG | 0.363074 | 5.3:-35072803 | MS.gene035175:CDS |
| GCCCCTGAAATCAATTCATT+TGG | 0.364619 | 5.3:-35074707 | MS.gene035175:CDS |
| ATTTGTGGTTCATCCAAATC+AGG | 0.380292 | 5.3:+35074274 | None:intergenic |
| GTGTCTGCTGCAGTATTTCA+AGG | 0.386731 | 5.3:-35073660 | MS.gene035175:intron |
| GGCTCCACTTTGCCAAATGC+TGG | 0.389898 | 5.3:-35073303 | MS.gene035175:CDS |
| ATTGTCTTGCTTCAGATCTT+GGG | 0.404763 | 5.3:-35073988 | MS.gene035175:intron |
| AAGATTATCCTAATGAAGAT+TGG | 0.408744 | 5.3:-35074216 | MS.gene035175:CDS |
| GGATGAAAGTGATCCTGATT+TGG | 0.408862 | 5.3:-35074287 | MS.gene035175:CDS |
| ATTTGGTGAATTACCTCAAT+GGG | 0.414194 | 5.3:-35073945 | MS.gene035175:CDS |
| ATCAATGAACTTGTTCTTGA+TGG | 0.416085 | 5.3:-35074773 | MS.gene035175:CDS |
| ATAATGAACAATCCAGCATT+TGG | 0.417188 | 5.3:+35073291 | None:intergenic |
| AAATGTAACCAATCTTCATT+AGG | 0.423631 | 5.3:+35074208 | None:intergenic |
| GTCCACATGCTCAACAAGTA+TGG | 0.432050 | 5.3:+35074926 | None:intergenic |
| TTACCTTGCAGCTTTGCATA+AGG | 0.435788 | 5.3:-35073170 | MS.gene035175:intron |
| TGCAGCAAATGTTGAATTTG+TGG | 0.449869 | 5.3:+35074259 | None:intergenic |
| AAGGGGTTGAGGAATTCTAT+AGG | 0.455597 | 5.3:-35074534 | MS.gene035175:CDS |
| TTCATCAAAGGCACAACCTA+AGG | 0.469206 | 5.3:+35073789 | None:intergenic |
| GCAGGAGACACATTTCCCTT+AGG | 0.472594 | 5.3:-35073805 | MS.gene035175:intron |
| AATTTGGTGAATTACCTCAA+TGG | 0.484943 | 5.3:-35073946 | MS.gene035175:CDS |
| ATCTAATGTGCAGGTTGCTA+AGG | 0.496415 | 5.3:-35073331 | MS.gene035175:intron |
| CTTGTTGAGCATGTGGACTT+TGG | 0.499354 | 5.3:-35074921 | MS.gene035175:intron |
| TGAATTGCTGAATGAGGTTG+TGG | 0.499420 | 5.3:-35074308 | MS.gene035175:CDS |
| GGCCAAATGAATTGATTTCA+GGG | 0.508703 | 5.3:+35074705 | None:intergenic |
| TAATGTAGGTGAAGAAAATG+AGG | 0.510914 | 5.3:-35074381 | MS.gene035175:intron |
| ACATGATGATTATATGTGTA+TGG | 0.511397 | 5.3:-35073546 | MS.gene035175:intron |
| TAGAAAATGTGATGATGTCA+TGG | 0.518307 | 5.3:-35073571 | MS.gene035175:CDS |
| TTACCTCAATGGGCTGTTGT+TGG | 0.522851 | 5.3:-35073935 | MS.gene035175:intron |
| CAAAGCAGAAATGAGTATAT+GGG | 0.524713 | 5.3:-35074338 | MS.gene035175:CDS |
| AATGAACTTGTTCTTGATGG+TGG | 0.532274 | 5.3:-35074770 | MS.gene035175:CDS |
| CTTGCAGCTTTGCATAAGGA+AGG | 0.535318 | 5.3:-35073166 | MS.gene035175:intron |
| CAATCCAGCATTTGGCAAAG+TGG | 0.546474 | 5.3:+35073299 | None:intergenic |
| ATCACCATCTAAGCTTTGCT+GGG | 0.549776 | 5.3:+35072799 | None:intergenic |
| TTATCTATCACTTATTGAGA+AGG | 0.553529 | 5.3:-35072919 | MS.gene035175:intron |
| AAGCAGGGGATTTGATATCA+GGG | 0.566312 | 5.3:+35073633 | None:intergenic |
| GGGATCTACAATGAAGGGTG+TGG | 0.566729 | 5.3:-35073596 | MS.gene035175:CDS |
| GTGAACATTTGATTCATCAA+AGG | 0.571274 | 5.3:+35073777 | None:intergenic |
| AAAATGGGATCTACAATGAA+GGG | 0.582573 | 5.3:-35073601 | MS.gene035175:CDS |
| ATTATGATGAAGAAAGTGAA+AGG | 0.589249 | 5.3:-35074561 | MS.gene035175:CDS |
| TCATCAAAGGCACAACCTAA+GGG | 0.592008 | 5.3:+35073790 | None:intergenic |
| TTGGAAATAACCTGAAGGCA+TGG | 0.600865 | 5.3:+35074684 | None:intergenic |
| ATGTTGTGAATTGCTGAATG+AGG | 0.601153 | 5.3:-35074314 | MS.gene035175:CDS |
| TGATCTCTACAGCAAAAGCA+AGG | 0.624334 | 5.3:-35072973 | MS.gene035175:CDS |
| GCCAAATGAATTGATTTCAG+GGG | 0.627992 | 5.3:+35074706 | None:intergenic |
| GACCATACTTGTTGAGCATG+TGG | 0.630105 | 5.3:-35074928 | MS.gene035175:CDS |
| AATGTAGGTGAAGAAAATGA+GGG | 0.632828 | 5.3:-35074380 | MS.gene035175:intron |
| TAACCAACAACAGCCCATTG+AGG | 0.638571 | 5.3:+35073932 | None:intergenic |
| AGAAAATGTGATGATGTCAT+GGG | 0.639421 | 5.3:-35073570 | MS.gene035175:CDS |
| TGAATCAAATGTTCACCACA+AGG | 0.666189 | 5.3:-35073770 | MS.gene035175:intron |
| GTAGGTGAAGAAAATGAGGG+AGG | 0.669919 | 5.3:-35074377 | MS.gene035175:intron |
| GAAAATGTGATGATGTCATG+GGG | 0.759969 | 5.3:-35073569 | MS.gene035175:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAATGTTAATTAATTAATGT+AGG | - | chr5.3:35073335-35073354 | MS.gene035175:intron | 10.0% |
| !! | AAAAAACAATGAAATAGAAT+TGG | + | chr5.3:35073068-35073087 | None:intergenic | 15.0% |
| !! | TTAGTAATTATTATGTAATG+AGG | + | chr5.3:35074712-35074731 | None:intergenic | 15.0% |
| !!! | TTAATTAACATTTTGCAAAT+TGG | + | chr5.3:35073328-35073347 | None:intergenic | 15.0% |
| !! | AAAGATCATTTACAATTTCA+AGG | - | chr5.3:35073624-35073643 | MS.gene035175:CDS | 20.0% |
| !! | AGATATTTATAATTACCTTG+TGG | + | chr5.3:35073978-35073997 | None:intergenic | 20.0% |
| !! | ATCATATGAAAATAAGTGTA+AGG | + | chr5.3:35073833-35073852 | None:intergenic | 20.0% |
| !! | TCAATAAGTGATAGATAATA+TGG | + | chr5.3:35074809-35074828 | None:intergenic | 20.0% |
| !!! | AATTCAACATTTTAACTGAA+TGG | - | chr5.3:35073888-35073907 | MS.gene035175:intron | 20.0% |
| !!! | CACATTTTTATCATCAAATT+GGG | + | chr5.3:35072925-35072944 | None:intergenic | 20.0% |
| !!! | TTGTGTTACTTATTTTGTTT+TGG | - | chr5.3:35074889-35074908 | MS.gene035175:intron | 20.0% |
| ! | AAATGTAACCAATCTTCATT+AGG | + | chr5.3:35073525-35073544 | None:intergenic | 25.0% |
| ! | AAGATTATCCTAATGAAGAT+TGG | - | chr5.3:35073514-35073533 | MS.gene035175:intron | 25.0% |
| ! | ACAAGATGATTGGAATTATT+TGG | - | chr5.3:35073141-35073160 | MS.gene035175:CDS | 25.0% |
| ! | ACATGATGATTATATGTGTA+TGG | - | chr5.3:35074184-35074203 | MS.gene035175:intron | 25.0% |
| ! | AGAAATTAACACAAGATGAT+TGG | - | chr5.3:35073131-35073150 | MS.gene035175:CDS | 25.0% |
| ! | AGTAACACAAAAAAACAATG+AGG | + | chr5.3:35074879-35074898 | None:intergenic | 25.0% |
| ! | ATCGTGTGATGAATTATTTA+CGG | + | chr5.3:35074215-35074234 | None:intergenic | 25.0% |
| ! | ATTATGATGAAGAAAGTGAA+AGG | - | chr5.3:35073169-35073188 | MS.gene035175:intron | 25.0% |
| ! | CATAATAACGAAAATGCTTA+CGG | + | chr5.3:35074483-35074502 | None:intergenic | 25.0% |
| ! | CTGCTTATAACACTAAAAAT+GGG | - | chr5.3:35074114-35074133 | MS.gene035175:intron | 25.0% |
| ! | GAACAAAAAAAAAACATGAC+CGG | + | chr5.3:35074856-35074875 | None:intergenic | 25.0% |
| ! | GTAACACAAAAAAACAATGA+GGG | + | chr5.3:35074878-35074897 | None:intergenic | 25.0% |
| ! | TGAAATAGACACAAATTTGA+TGG | + | chr5.3:35073275-35073294 | None:intergenic | 25.0% |
| ! | TGATGATAAAAATGTGCATT+TGG | - | chr5.3:35072929-35072948 | MS.gene035175:CDS | 25.0% |
| ! | TGCTTACAAAATCATATGTT+TGG | + | chr5.3:35073236-35073255 | None:intergenic | 25.0% |
| ! | TTATCTATCACTTATTGAGA+AGG | - | chr5.3:35074811-35074830 | MS.gene035175:CDS | 25.0% |
| !! | AAATTTTCTGTACAGAGAAT+GGG | + | chr5.3:35074517-35074536 | None:intergenic | 25.0% |
| !! | CATTTTGCAAATTGGAATTT+TGG | + | chr5.3:35073320-35073339 | None:intergenic | 25.0% |
| !! | GCACATTTTTATCATCAAAT+TGG | + | chr5.3:35072926-35072945 | None:intergenic | 25.0% |
| !! | TAAATTTTCTGTACAGAGAA+TGG | + | chr5.3:35074518-35074537 | None:intergenic | 25.0% |
| !! | TTTTACTGAATCGTTTGAAT+TGG | - | chr5.3:35074255-35074274 | MS.gene035175:CDS | 25.0% |
| !!! | AAGATTTTGAGAATTTGAAG+TGG | - | chr5.3:35074613-35074632 | MS.gene035175:intron | 25.0% |
| !!! | ATAAAGTATCGTTGAATCAT+CGG | + | chr5.3:35074358-35074377 | None:intergenic | 25.0% |
| !!! | ATTTTTAGTGTTATAAGCAG+GGG | + | chr5.3:35074114-35074133 | None:intergenic | 25.0% |
| !!! | CATTTTTAGTGTTATAAGCA+GGG | + | chr5.3:35074115-35074134 | None:intergenic | 25.0% |
| !!! | TGTAAATGATCTTTTTTGTC+AGG | + | chr5.3:35073618-35073637 | None:intergenic | 25.0% |
| AAAAATGGGATCTACAATGA+AGG | - | chr5.3:35074128-35074147 | MS.gene035175:intron | 30.0% | |
| AAAATGGGATCTACAATGAA+GGG | - | chr5.3:35074129-35074148 | MS.gene035175:intron | 30.0% | |
| AAGAAAGTGAAAGGCAAAAA+GGG | - | chr5.3:35073178-35073197 | MS.gene035175:intron | 30.0% | |
| AATGTAGGTGAAGAAAATGA+GGG | - | chr5.3:35073350-35073369 | MS.gene035175:intron | 30.0% | |
| ACAAAGCAGAAATGAGTATA+TGG | - | chr5.3:35073391-35073410 | MS.gene035175:intron | 30.0% | |
| ACCTTTCTAAATGGATATCA+TGG | - | chr5.3:35073688-35073707 | MS.gene035175:intron | 30.0% | |
| ATAATGAACAATCCAGCATT+TGG | + | chr5.3:35074442-35074461 | None:intergenic | 30.0% | |
| ATGGTTAATGACATATTTGC+AGG | - | chr5.3:35073907-35073926 | MS.gene035175:intron | 30.0% | |
| ATTCTTCTGCTTCCTAAATT+TGG | - | chr5.3:35073768-35073787 | MS.gene035175:intron | 30.0% | |
| CAAAGCAGAAATGAGTATAT+GGG | - | chr5.3:35073392-35073411 | MS.gene035175:intron | 30.0% | |
| CCTGCTTATAACACTAAAAA+TGG | - | chr5.3:35074113-35074132 | MS.gene035175:intron | 30.0% | |
| CCTTTCTAAATGGATATCAT+GGG | - | chr5.3:35073689-35073708 | MS.gene035175:intron | 30.0% | |
| GAATCATCGGAAAATTGATT+CGG | + | chr5.3:35074345-35074364 | None:intergenic | 30.0% | |
| GTGAACATTTGATTCATCAA+AGG | + | chr5.3:35073956-35073975 | None:intergenic | 30.0% | |
| TAACACCAATCTTTATGAAC+CGG | - | chr5.3:35074834-35074853 | MS.gene035175:intron | 30.0% | |
| TAATGTAGGTGAAGAAAATG+AGG | - | chr5.3:35073349-35073368 | MS.gene035175:intron | 30.0% | |
| TAGAATTGGAAATAACCTGA+AGG | + | chr5.3:35073054-35073073 | None:intergenic | 30.0% | |
| TGAGGTAATTCACCAAATTT+AGG | + | chr5.3:35073783-35073802 | None:intergenic | 30.0% | |
| TTTGTGTCTATTTCACATGA+AGG | - | chr5.3:35073280-35073299 | MS.gene035175:CDS | 30.0% | |
| ! | AATTTGGTGAATTACCTCAA+TGG | - | chr5.3:35073784-35073803 | MS.gene035175:CDS | 30.0% |
| ! | AATTTTCTGTACAGAGAATG+GGG | + | chr5.3:35074516-35074535 | None:intergenic | 30.0% |
| ! | AGAAAATGTGATGATGTCAT+GGG | - | chr5.3:35074160-35074179 | MS.gene035175:intron | 30.0% |
| ! | ATCAATGAACTTGTTCTTGA+TGG | - | chr5.3:35072957-35072976 | MS.gene035175:CDS | 30.0% |
| ! | ATGTCAGACTTGTTCAAATT+AGG | + | chr5.3:35073668-35073687 | None:intergenic | 30.0% |
| ! | ATTTGGTGAATTACCTCAAT+GGG | - | chr5.3:35073785-35073804 | MS.gene035175:CDS | 30.0% |
| ! | GACTTGTTCAAATTAGGATA+TGG | + | chr5.3:35073662-35073681 | None:intergenic | 30.0% |
| ! | TAGAAAATGTGATGATGTCA+TGG | - | chr5.3:35074159-35074178 | MS.gene035175:intron | 30.0% |
| !! | AAAATTGATTCGGATTTCCT+CGG | + | chr5.3:35074335-35074354 | None:intergenic | 30.0% |
| !!! | CCATTTTTAGTGTTATAAGC+AGG | + | chr5.3:35074116-35074135 | None:intergenic | 30.0% |
| ACGAAAATGCTTACGGTAAA+AGG | + | chr5.3:35074476-35074495 | None:intergenic | 35.0% | |
| AGAAAGTGAAAGGCAAAAAG+GGG | - | chr5.3:35073179-35073198 | MS.gene035175:intron | 35.0% | |
| ATAACAAGCCACGTTATTAC+AGG | - | chr5.3:35072897-35072916 | MS.gene035175:intron | 35.0% | |
| ATGTTGTGAATTGCTGAATG+AGG | - | chr5.3:35073416-35073435 | MS.gene035175:intron | 35.0% | |
| ATTGTCTTGCTTCAGATCTT+GGG | - | chr5.3:35073742-35073761 | MS.gene035175:intron | 35.0% | |
| ATTTGTGGTTCATCCAAATC+AGG | + | chr5.3:35073459-35073478 | None:intergenic | 35.0% | |
| CCCATGATATCCATTTAGAA+AGG | + | chr5.3:35073692-35073711 | None:intergenic | 35.0% | |
| GAAGAAAGTGAAAGGCAAAA+AGG | - | chr5.3:35073177-35073196 | MS.gene035175:intron | 35.0% | |
| GATGATTGGAATTATTTGGC+AGG | - | chr5.3:35073145-35073164 | MS.gene035175:CDS | 35.0% | |
| GTCTGACATACCTTTCTAAA+TGG | - | chr5.3:35073679-35073698 | MS.gene035175:intron | 35.0% | |
| TAACAAGCCACGTTATTACA+GGG | - | chr5.3:35072898-35072917 | MS.gene035175:intron | 35.0% | |
| TATTGTCTTGCTTCAGATCT+TGG | - | chr5.3:35073741-35073760 | MS.gene035175:intron | 35.0% | |
| TGAATCAAATGTTCACCACA+AGG | - | chr5.3:35073960-35073979 | MS.gene035175:CDS | 35.0% | |
| TGCAGCAAATGTTGAATTTG+TGG | + | chr5.3:35073474-35073493 | None:intergenic | 35.0% | |
| ! | AATGAACTTGTTCTTGATGG+TGG | - | chr5.3:35072960-35072979 | MS.gene035175:CDS | 35.0% |
| ! | GAAAATGTGATGATGTCATG+GGG | - | chr5.3:35074161-35074180 | MS.gene035175:intron | 35.0% |
| ! | GCCAAATGAATTGATTTCAG+GGG | + | chr5.3:35073027-35073046 | None:intergenic | 35.0% |
| ! | GGCCAAATGAATTGATTTCA+GGG | + | chr5.3:35073028-35073047 | None:intergenic | 35.0% |
| ! | TGGCCAAATGAATTGATTTC+AGG | + | chr5.3:35073029-35073048 | None:intergenic | 35.0% |
| !! | AACGTGGCTTGTTATATGAT+GGG | + | chr5.3:35072892-35072911 | None:intergenic | 35.0% |
| !! | TAACGTGGCTTGTTATATGA+TGG | + | chr5.3:35072893-35072912 | None:intergenic | 35.0% |
| !!! | GCATTCTGAGAAGCATTTTT+TGG | + | chr5.3:35072996-35073015 | None:intergenic | 35.0% |
| !!! | TGAGAAGCATTTTTTGGTAG+AGG | + | chr5.3:35072990-35073009 | None:intergenic | 35.0% |
| AAGCAGGGGATTTGATATCA+GGG | + | chr5.3:35074100-35074119 | None:intergenic | 40.0% | |
| AAGGGGTTGAGGAATTCTAT+AGG | - | chr5.3:35073196-35073215 | MS.gene035175:intron | 40.0% | |
| ACATTGTGCATCTAATGTGC+AGG | - | chr5.3:35074390-35074409 | MS.gene035175:intron | 40.0% | |
| ATCTAATGTGCAGGTTGCTA+AGG | - | chr5.3:35074399-35074418 | MS.gene035175:intron | 40.0% | |
| ATTTCCCAGCAAAGCTTAGA+TGG | - | chr5.3:35074927-35074946 | MS.gene035175:CDS | 40.0% | |
| CATTTGACTGCTCTCATTCA+TGG | - | chr5.3:35073540-35073559 | MS.gene035175:intron | 40.0% | |
| GCCCCTGAAATCAATTCATT+TGG | - | chr5.3:35073023-35073042 | MS.gene035175:intron | 40.0% | |
| GGATGAAAGTGATCCTGATT+TGG | - | chr5.3:35073443-35073462 | MS.gene035175:intron | 40.0% | |
| TAAGCAGGGGATTTGATATC+AGG | + | chr5.3:35074101-35074120 | None:intergenic | 40.0% | |
| TGAATTGCTGAATGAGGTTG+TGG | - | chr5.3:35073422-35073441 | MS.gene035175:intron | 40.0% | |
| TGATCTCTACAGCAAAAGCA+AGG | - | chr5.3:35074757-35074776 | MS.gene035175:CDS | 40.0% | |
| TTACCTTGCAGCTTTGCATA+AGG | - | chr5.3:35074560-35074579 | MS.gene035175:CDS | 40.0% | |
| TTATGCAAAGCTGCAAGGTA+AGG | + | chr5.3:35074561-35074580 | None:intergenic | 40.0% | |
| TTGGAAATAACCTGAAGGCA+TGG | + | chr5.3:35073049-35073068 | None:intergenic | 40.0% | |
| ! | CATGACCGGTTCATAAAGAT+TGG | + | chr5.3:35074842-35074861 | None:intergenic | 40.0% |
| ! | TCATCAAAGGCACAACCTAA+GGG | + | chr5.3:35073943-35073962 | None:intergenic | 40.0% |
| ! | TTCATCAAAGGCACAACCTA+AGG | + | chr5.3:35073944-35073963 | None:intergenic | 40.0% |
| ATTCATTTGGCCATGCCTTC+AGG | - | chr5.3:35073036-35073055 | MS.gene035175:intron | 45.0% | |
| ATTGGGACCCTGTAATAACG+TGG | + | chr5.3:35072908-35072927 | None:intergenic | 45.0% | |
| CAATCCAGCATTTGGCAAAG+TGG | + | chr5.3:35074434-35074453 | None:intergenic | 45.0% | |
| CTGCAGCAGACACAAGATTT+AGG | + | chr5.3:35074063-35074082 | None:intergenic | 45.0% | |
| CTTCCTTATGCAAAGCTGCA+AGG | + | chr5.3:35074566-35074585 | None:intergenic | 45.0% | |
| CTTGCAGCTTTGCATAAGGA+AGG | - | chr5.3:35074564-35074583 | MS.gene035175:CDS | 45.0% | |
| CTTGTTGAGCATGTGGACTT+TGG | - | chr5.3:35072809-35072828 | MS.gene035175:intron | 45.0% | |
| GTAGGTGAAGAAAATGAGGG+AGG | - | chr5.3:35073353-35073372 | MS.gene035175:intron | 45.0% | |
| GTCCACATGCTCAACAAGTA+TGG | + | chr5.3:35072807-35072826 | None:intergenic | 45.0% | |
| GTGCAGGTTGCTAAGGAAAA+TGG | - | chr5.3:35074406-35074425 | MS.gene035175:intron | 45.0% | |
| GTGTCTGCTGCAGTATTTCA+AGG | - | chr5.3:35074070-35074089 | MS.gene035175:intron | 45.0% | |
| TAACCAACAACAGCCCATTG+AGG | + | chr5.3:35073801-35073820 | None:intergenic | 45.0% | |
| TGAAAGGCAAAAAGGGGTTG+AGG | - | chr5.3:35073185-35073204 | MS.gene035175:intron | 45.0% | |
| ! | GACCATACTTGTTGAGCATG+TGG | - | chr5.3:35072802-35072821 | MS.gene035175:CDS | 45.0% |
| !! | TTACCTCAATGGGCTGTTGT+TGG | - | chr5.3:35073795-35073814 | MS.gene035175:CDS | 45.0% |
| !! | AAATAATATAAATATTGAAA+AGG | + | chr5.3:35073576-35073595 | None:intergenic | 5.0% |
| !! | TTTCAAAAAAAATAAAATTA+TGG | + | chr5.3:35073104-35073123 | None:intergenic | 5.0% |
| GCAGGAGACACATTTCCCTT+AGG | - | chr5.3:35073925-35073944 | MS.gene035175:intron | 50.0% | |
| GGGATCTACAATGAAGGGTG+TGG | - | chr5.3:35074134-35074153 | MS.gene035175:intron | 50.0% | |
| GGCTCCACTTTGCCAAATGC+TGG | - | chr5.3:35074427-35074446 | MS.gene035175:intron | 55.0% | |
| ! | GTGTGATGTGCTAGCTTCCG+AGG | - | chr5.3:35074315-35074334 | MS.gene035175:CDS | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5.3 | gene | 35072800 | 35074952 | 35072800 | ID=MS.gene035175 |
| chr5.3 | mRNA | 35072800 | 35074952 | 35072800 | ID=MS.gene035175.t1;Parent=MS.gene035175 |
| chr5.3 | exon | 35074922 | 35074952 | 35074922 | ID=MS.gene035175.t1.exon1;Parent=MS.gene035175.t1 |
| chr5.3 | CDS | 35074922 | 35074952 | 35074922 | ID=cds.MS.gene035175.t1;Parent=MS.gene035175.t1 |
| chr5.3 | exon | 35074695 | 35074833 | 35074695 | ID=MS.gene035175.t1.exon2;Parent=MS.gene035175.t1 |
| chr5.3 | CDS | 35074695 | 35074833 | 35074695 | ID=cds.MS.gene035175.t1;Parent=MS.gene035175.t1 |
| chr5.3 | exon | 35074504 | 35074585 | 35074504 | ID=MS.gene035175.t1.exon3;Parent=MS.gene035175.t1 |
| chr5.3 | CDS | 35074504 | 35074585 | 35074504 | ID=cds.MS.gene035175.t1;Parent=MS.gene035175.t1 |
| chr5.3 | exon | 35074191 | 35074395 | 35074191 | ID=MS.gene035175.t1.exon4;Parent=MS.gene035175.t1 |
| chr5.3 | CDS | 35074191 | 35074395 | 35074191 | ID=cds.MS.gene035175.t1;Parent=MS.gene035175.t1 |
| chr5.3 | exon | 35073936 | 35073995 | 35073936 | ID=MS.gene035175.t1.exon5;Parent=MS.gene035175.t1 |
| chr5.3 | CDS | 35073936 | 35073995 | 35073936 | ID=cds.MS.gene035175.t1;Parent=MS.gene035175.t1 |
| chr5.3 | exon | 35073771 | 35073823 | 35073771 | ID=MS.gene035175.t1.exon6;Parent=MS.gene035175.t1 |
| chr5.3 | CDS | 35073771 | 35073823 | 35073771 | ID=cds.MS.gene035175.t1;Parent=MS.gene035175.t1 |
| chr5.3 | exon | 35073547 | 35073669 | 35073547 | ID=MS.gene035175.t1.exon7;Parent=MS.gene035175.t1 |
| chr5.3 | CDS | 35073547 | 35073669 | 35073547 | ID=cds.MS.gene035175.t1;Parent=MS.gene035175.t1 |
| chr5.3 | exon | 35073271 | 35073340 | 35073271 | ID=MS.gene035175.t1.exon8;Parent=MS.gene035175.t1 |
| chr5.3 | CDS | 35073271 | 35073340 | 35073271 | ID=cds.MS.gene035175.t1;Parent=MS.gene035175.t1 |
| chr5.3 | exon | 35073103 | 35073181 | 35073103 | ID=MS.gene035175.t1.exon9;Parent=MS.gene035175.t1 |
| chr5.3 | CDS | 35073103 | 35073181 | 35073103 | ID=cds.MS.gene035175.t1;Parent=MS.gene035175.t1 |
| chr5.3 | exon | 35072920 | 35073001 | 35072920 | ID=MS.gene035175.t1.exon10;Parent=MS.gene035175.t1 |
| chr5.3 | CDS | 35072920 | 35073001 | 35072920 | ID=cds.MS.gene035175.t1;Parent=MS.gene035175.t1 |
| chr5.3 | exon | 35072800 | 35072826 | 35072800 | ID=MS.gene035175.t1.exon11;Parent=MS.gene035175.t1 |
| chr5.3 | CDS | 35072800 | 35072826 | 35072800 | ID=cds.MS.gene035175.t1;Parent=MS.gene035175.t1 |
| Gene Sequence |
| Protein sequence |
