AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene035401

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene035401.t1 MTR_8g442750 98.810 252 3 0 1 252 1 252 0.0 506
MS.gene035401.t1 MTR_7g113650 30.859 256 145 9 9 249 34 272 1.20e-23 99.0
MS.gene035401.t1 MTR_4g131740 32.787 244 144 7 14 248 40 272 3.34e-23 97.8
MS.gene035401.t1 MTR_1g082760 30.400 250 154 6 9 249 34 272 9.27e-23 96.3
MS.gene035401.t1 MTR_4g064887 30.242 248 154 6 14 255 15 249 5.16e-21 91.3
MS.gene035401.t1 MTR_7g063270 29.289 239 155 5 14 247 16 245 7.84e-20 87.8
MS.gene035401.t1 MTR_7g063260 28.340 247 164 4 14 255 16 254 2.06e-18 84.0
MS.gene035401.t1 MTR_4g064883 28.395 243 165 4 14 255 14 248 2.89e-18 83.6
MS.gene035401.t1 MTR_4g064887 32.663 199 115 6 14 206 15 200 3.04e-18 82.4
MS.gene035401.t1 MTR_7g063390 28.708 209 138 4 1 206 1 201 3.87e-17 80.1
MS.gene035401.t1 MTR_8g096620 31.390 223 137 6 9 227 40 250 6.71e-17 80.9
MS.gene035401.t1 MTR_8g096580 32.843 204 112 7 12 206 43 230 8.12e-17 80.1
MS.gene035401.t1 MTR_3g068065 26.693 251 159 9 14 255 17 251 1.39e-16 79.0
MS.gene035401.t1 MTR_3g085740 28.455 246 162 5 3 247 67 299 1.67e-16 79.3
MS.gene035401.t1 MTR_3g068070 26.016 246 167 6 14 255 15 249 4.85e-16 77.4
MS.gene035401.t1 MTR_4g052350 30.116 259 153 9 14 262 14 254 5.08e-16 77.0
MS.gene035401.t1 MTR_4g064883 30.890 191 123 4 14 203 14 196 5.43e-16 75.9
MS.gene035401.t1 MTR_4g132850 31.325 249 141 8 11 249 4 232 5.65e-16 76.6
MS.gene035401.t1 MTR_7g063320 26.800 250 164 5 14 255 15 253 8.67e-16 76.3
MS.gene035401.t1 MTR_3g068155 27.016 248 162 7 14 255 19 253 1.97e-15 75.5
MS.gene035401.t1 MTR_7g063360 27.341 267 169 7 1 255 1 254 2.09e-15 75.5
MS.gene035401.t1 MTR_4g052300 29.344 259 155 8 14 262 8 248 2.38e-15 75.1
MS.gene035401.t1 MTR_3g068175 28.000 250 157 8 14 255 17 251 2.47e-15 75.1
MS.gene035401.t1 MTR_7g071680 27.972 286 165 9 4 262 19 290 2.52e-15 75.5
MS.gene035401.t1 MTR_1196s0010 29.707 239 156 5 17 255 277 503 5.48e-15 75.9
MS.gene035401.t1 MTR_7g105590 31.122 196 121 5 14 206 8 192 6.55e-15 72.4
MS.gene035401.t1 MTR_4g052320 29.615 260 154 8 14 262 8 249 6.56e-15 73.9
MS.gene035401.t1 MTR_3g068085 25.820 244 170 5 14 255 15 249 1.18e-14 73.2
MS.gene035401.t1 MTR_4g052340 29.365 252 164 7 14 262 14 254 3.27e-14 72.0
MS.gene035401.t1 MTR_7g105580 29.572 257 142 10 14 262 8 233 5.53e-14 71.2
MS.gene035401.t1 MTR_3g068175 27.600 250 162 8 14 255 17 255 6.10e-14 71.2
MS.gene035401.t1 MTR_1g068955 30.385 260 163 8 1 252 1 250 4.17e-13 68.9
MS.gene035401.t1 MTR_4g058810 29.386 228 146 7 14 234 11 230 2.50e-12 66.6
MS.gene035401.t1 MTR_3g098470 29.932 147 96 2 15 161 33 172 5.60e-12 65.9
MS.gene035401.t1 MTR_4g078630 29.603 277 158 11 1 258 5 263 6.06e-12 65.5
MS.gene035401.t1 MTR_1g051165 30.516 213 125 9 6 204 5 208 6.25e-12 65.5
MS.gene035401.t1 MTR_8g096060 31.293 147 91 3 15 161 35 171 6.08e-11 62.8
MS.gene035401.t1 MTR_1g031180 28.571 147 98 2 15 161 38 177 6.30e-11 62.8
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene035401.t1 AT3G12800 78.516 256 54 1 6 260 2 257 1.45e-132 379
MS.gene035401.t1 AT2G07640 74.046 131 33 1 131 260 1 131 3.48e-57 182
MS.gene035401.t1 AT3G05260 32.016 253 153 6 5 249 27 268 6.56e-27 107
MS.gene035401.t1 AT1G54870 31.967 244 147 6 14 249 82 314 1.58e-26 107
MS.gene035401.t1 AT1G54870 31.967 244 147 6 14 249 84 316 1.64e-26 107
MS.gene035401.t1 AT1G63380 30.739 257 159 9 14 260 19 266 3.52e-21 92.0
MS.gene035401.t1 AT1G63380 30.739 257 159 9 14 260 15 262 3.61e-21 91.7
MS.gene035401.t1 AT1G63380 30.739 257 159 9 14 260 22 269 3.80e-21 92.0
MS.gene035401.t1 AT1G63380 30.739 257 159 9 14 260 17 264 4.20e-21 91.7
MS.gene035401.t1 AT5G50600 32.995 197 120 4 12 206 43 229 3.84e-20 90.1
MS.gene035401.t1 AT5G50700 32.995 197 120 4 12 206 43 229 3.84e-20 90.1
MS.gene035401.t1 AT2G17845 32.308 260 153 10 14 260 47 296 3.91e-20 89.4
MS.gene035401.t1 AT1G62610 30.350 257 160 9 14 260 13 260 2.65e-19 86.7
MS.gene035401.t1 AT1G62610 30.350 257 160 9 14 260 14 261 3.13e-19 86.3
MS.gene035401.t1 AT1G62610 30.350 257 160 9 14 260 19 266 3.14e-19 86.7
MS.gene035401.t1 AT1G62610 30.350 257 160 9 14 260 15 262 3.37e-19 86.3
MS.gene035401.t1 AT1G52340 29.749 279 158 9 14 265 18 285 1.40e-17 82.0
MS.gene035401.t1 AT4G05530 30.041 243 152 4 11 249 6 234 2.72e-17 80.5
MS.gene035401.t1 AT2G29260 28.571 245 162 5 14 255 68 302 4.95e-17 80.9
MS.gene035401.t1 AT5G18210 29.889 271 151 10 14 262 8 261 9.76e-17 79.3
MS.gene035401.t1 AT5G18210 30.469 256 144 9 14 252 8 246 1.19e-16 79.0
MS.gene035401.t1 AT3G55310 30.916 262 151 11 14 260 17 263 1.55e-16 79.0
MS.gene035401.t1 AT3G55290 35.500 200 110 8 14 204 17 206 2.36e-16 78.2
MS.gene035401.t1 AT3G55290 35.294 204 105 9 14 204 18 207 2.37e-16 78.2
MS.gene035401.t1 AT2G29150 26.829 246 164 7 14 255 16 249 7.70e-16 76.6
MS.gene035401.t1 AT3G04000 29.213 267 164 8 1 252 1 257 1.25e-15 76.3
MS.gene035401.t1 AT5G06060 26.829 246 165 5 14 255 9 243 1.43e-15 75.9
MS.gene035401.t1 AT3G46170 30.916 262 151 11 14 260 26 272 1.67e-15 75.9
MS.gene035401.t1 AT2G29290 28.571 245 162 7 14 255 7 241 2.05e-15 75.5
MS.gene035401.t1 AT5G50770 34.518 197 113 5 12 204 43 227 3.71e-15 75.5
MS.gene035401.t1 AT3G47350 31.841 201 119 6 12 207 42 229 7.08e-15 74.3
MS.gene035401.t1 AT3G47350 31.841 201 119 6 12 207 42 229 8.43e-15 74.3
MS.gene035401.t1 AT4G13180 28.340 247 158 9 14 252 13 248 1.83e-14 72.8
MS.gene035401.t1 AT2G29370 25.610 246 168 5 14 255 16 250 3.67e-14 72.0
MS.gene035401.t1 AT3G47360 29.474 190 122 5 17 204 48 227 6.62e-14 71.6
MS.gene035401.t1 AT3G26770 26.820 261 167 9 14 262 41 289 1.33e-13 70.9
MS.gene035401.t1 AT4G10020 28.283 198 124 5 7 198 40 225 3.59e-13 70.1
MS.gene035401.t1 AT3G51680 29.181 281 172 9 1 262 19 291 3.98e-13 69.3
MS.gene035401.t1 AT1G24360 27.823 248 159 5 1 247 70 298 7.15e-13 68.6
MS.gene035401.t1 AT4G03140 30.534 262 155 9 14 262 78 325 9.57e-13 68.6
MS.gene035401.t1 AT2G29310 27.888 251 156 10 14 255 7 241 1.98e-12 66.6
MS.gene035401.t1 AT2G29320 25.610 246 169 4 14 255 13 248 8.85e-12 65.1
MS.gene035401.t1 AT3G47350 36.893 103 64 1 12 113 42 144 1.68e-11 63.9
MS.gene035401.t1 AT2G47140 29.218 243 153 9 14 249 6 236 2.44e-11 63.5
MS.gene035401.t1 AT2G29330 29.644 253 149 10 14 255 7 241 5.51e-11 62.4

Find 105 sgRNAs with CRISPR-Local

Find 267 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CCACTAGTATGAACCATATC+TGG 0.244365 8.2:+52874644 MS.gene035401:CDS
ATTAGTGCTACCTTGCATTA+TGG 0.276429 8.2:+52873451 MS.gene035401:CDS
CGCTTTCGATTCCAGCTGTT+GGG 0.292110 8.2:+52871759 MS.gene035401:CDS
CCTTGCATTATGGAGCTTCT+TGG 0.293806 8.2:+52873461 MS.gene035401:CDS
TTCAAGCCAGAAATCTTAAA+AGG 0.312685 8.2:+52871599 MS.gene035401:CDS
ACTGGCGGAGCGTCGGGAAT+TGG 0.320337 8.2:+52871638 MS.gene035401:CDS
CCACCAGCAGCACCGCCTAT+TGG 0.328189 8.2:-52875026 None:intergenic
GGCAAAGTAGCTTTAATAAC+TGG 0.335212 8.2:+52871620 MS.gene035401:CDS
TGTATAAACTTGGGGAGAAA+TGG 0.343265 8.2:+52873887 MS.gene035401:CDS
CCTCTGCTACCTATTTCTTC+AGG 0.344151 8.2:-52873847 None:intergenic
CAACTCCTCCTGTCATGTTC+TGG 0.359059 8.2:-52874681 None:intergenic
AAGAAACTTGGCCCTGGAAT+GGG 0.360032 8.2:+52873747 MS.gene035401:CDS
GTTTGAAATATCAACGCAAT+TGG 0.363203 8.2:+52871661 MS.gene035401:CDS
AGTTCTTCAATCTGCGGTTT+CGG 0.369174 8.2:+52871727 MS.gene035401:CDS
TGCTTCACTGCTGCCGGTGG+TGG 0.373920 8.2:-52875055 None:intergenic
TTAATAACTGGCGGAGCGTC+GGG 0.374098 8.2:+52871632 MS.gene035401:CDS
CATAATCTGTTCCCCATTCC+AGG 0.380062 8.2:-52873759 None:intergenic
TTTGAAATATCAACGCAATT+GGG 0.380854 8.2:+52871662 MS.gene035401:CDS
GACGACTCCTTTCCCAGATA+TGG 0.389987 8.2:-52874657 None:intergenic
CTGAGGATCTTTCGCCGAAT+GGG 0.391331 8.2:+52871900 MS.gene035401:CDS
TTTAAGATTTCTGGCTTGAA+TGG 0.395494 8.2:-52871596 None:intergenic
CTGGCGGAGCGTCGGGAATT+GGG 0.395868 8.2:+52871639 MS.gene035401:CDS
GATTATGATATTCGAGTCAA+TGG 0.397358 8.2:+52873775 MS.gene035401:CDS
ATTCCAGCTGTTGGGTTTGA+AGG 0.400062 8.2:+52871767 MS.gene035401:CDS
CACTCCTGGCATGAGTAAAC+TGG 0.411577 8.2:+52873822 MS.gene035401:CDS
AAACTGGCTCCTGAAGAAAT+AGG 0.417404 8.2:+52873838 MS.gene035401:CDS
TCGCCGAATGGGTTTCGAAC+AGG 0.420284 8.2:+52871911 MS.gene035401:CDS
GGGATTGCACCGGGTCCAAT+AGG 0.421199 8.2:+52873796 MS.gene035401:CDS
TCGCTTTCGATTCCAGCTGT+TGG 0.427172 8.2:+52871758 MS.gene035401:CDS
GTATAAACTTGGGGAGAAAT+GGG 0.441031 8.2:+52873888 MS.gene035401:CDS
TTTAATAACTGGCGGAGCGT+CGG 0.442410 8.2:+52871631 MS.gene035401:CDS
ATGCCAGGAGTGTCACCTAT+TGG 0.442884 8.2:-52873811 None:intergenic
ACAGGAGGAGTTGCGATTGT+TGG 0.448753 8.2:+52874691 MS.gene035401:CDS
CACTTAAGTATCTGAAGAAA+GGG 0.449824 8.2:+52873386 MS.gene035401:CDS
TTCTGGCTTGAATGGTGATT+CGG 0.451193 8.2:-52871588 None:intergenic
TGAAGGGGATGTGAGGAAGC+AGG 0.455697 8.2:+52871784 MS.gene035401:CDS
GCTGAGGATCTTTCGCCGAA+TGG 0.457228 8.2:+52871899 MS.gene035401:CDS
CGATTGTTGGCGCTGAAAGA+TGG 0.462873 8.2:+52874704 MS.gene035401:CDS
ACCACCACATTCTCCGTGCT+TGG 0.463517 8.2:-52874777 None:intergenic
ATTCTTGTTAATGCTGCTGC+TGG 0.464854 8.2:+52871860 MS.gene035401:CDS
CTCTTCTTAGCATCAGATGC+AGG 0.469651 8.2:+52873928 MS.gene035401:CDS
GAAATGCCTCTGTATAAACT+TGG 0.470825 8.2:+52873877 MS.gene035401:CDS
TGGAGCGTCGGTTGCTGTGA+TGG 0.472642 8.2:+52871691 MS.gene035401:CDS
AGGAACAAAATACTTCCAAT+AGG 0.473944 8.2:+52875011 MS.gene035401:CDS
TTCCAGCTGTTGGGTTTGAA+GGG 0.474545 8.2:+52871768 MS.gene035401:CDS
GCACTTAAGTATCTGAAGAA+AGG 0.480331 8.2:+52873385 MS.gene035401:CDS
CAAGAAACTTGGCCCTGGAA+TGG 0.484527 8.2:+52873746 MS.gene035401:CDS
CAGGGCCAAGTTTCTTGTAG+TGG 0.486821 8.2:-52873740 None:intergenic
CTTCCAATAGGCGGTGCTGC+TGG 0.498753 8.2:+52875023 MS.gene035401:CDS
TCTTTGTGCTTCACTGCTGC+CGG 0.504873 8.2:-52875061 None:intergenic
AAATGCCTCTGTATAAACTT+GGG 0.505018 8.2:+52873878 MS.gene035401:CDS
TCCCCTTCAAACCCAACAGC+TGG 0.506137 8.2:-52871770 None:intergenic
TGATTCCACTACAAGAAACT+TGG 0.513482 8.2:+52873735 MS.gene035401:CDS
ATTATGATATTCGAGTCAAT+GGG 0.519870 8.2:+52873776 MS.gene035401:CDS
GGAGCCAGTTTACTCATGCC+AGG 0.525918 8.2:-52873826 None:intergenic
TCACCTGTTCGAAACCCATT+CGG 0.526674 8.2:-52871914 None:intergenic
AGTCGTCACCAGAACATGAC+AGG 0.532138 8.2:+52874673 MS.gene035401:CDS
CCAGATATGGTTCATACTAG+TGG 0.537115 8.2:-52874644 None:intergenic
CAGGTAGGAACTCTTCTAGT+GGG 0.537627 8.2:+52873413 MS.gene035401:CDS
CACTACAAGAAACTTGGCCC+TGG 0.538124 8.2:+52873741 MS.gene035401:CDS
CGAGTCAATGGGATTGCACC+GGG 0.541053 8.2:+52873787 MS.gene035401:CDS
CAGCGTGTGGGGTCCAAGCA+CGG 0.543542 8.2:+52874764 MS.gene035401:CDS
CTGGTGGCAAATGCCACCAC+CGG 0.548363 8.2:+52875042 MS.gene035401:CDS
TCGAGTCAATGGGATTGCAC+CGG 0.551196 8.2:+52873786 MS.gene035401:CDS
TTGGGTTTGAAGGGGATGTG+AGG 0.552630 8.2:+52871777 MS.gene035401:CDS
CGGTTGCTGTGATGGGTCGT+CGG 0.552646 8.2:+52871699 MS.gene035401:CDS
AATTCATGTATCTGCAGCAA+AGG 0.552785 8.2:+52873489 MS.gene035401:CDS
GGAGCGTCGGTTGCTGTGAT+GGG 0.554476 8.2:+52871692 MS.gene035401:CDS
CCACTAGAAGAGTTCCTACC+TGG 0.554576 8.2:-52873412 None:intergenic
TCCAGCTGTTGGGTTTGAAG+GGG 0.555982 8.2:+52871769 MS.gene035401:CDS
CGAATCTAGAGGCAGCGTGT+GGG 0.556534 8.2:+52874752 MS.gene035401:CDS
TTCTTGTTAATGCTGCTGCT+GGG 0.557653 8.2:+52871861 MS.gene035401:CDS
CCAATAGGCGGTGCTGCTGG+TGG 0.557671 8.2:+52875026 MS.gene035401:CDS
TATCTGAAGAAAGGGGCACC+AGG 0.566045 8.2:+52873394 MS.gene035401:CDS
TCAACGCAATTGGGGAAACA+TGG 0.567028 8.2:+52871671 MS.gene035401:CDS
TTGAAATATCAACGCAATTG+GGG 0.574459 8.2:+52871663 MS.gene035401:CDS
GGGTCCAAGCACGGAGAATG+TGG 0.579699 8.2:+52874773 MS.gene035401:CDS
AGAAACTTGGCCCTGGAATG+GGG 0.582570 8.2:+52873748 MS.gene035401:CDS
CCTGAAGAAATAGGTAGCAG+AGG 0.588385 8.2:+52873847 MS.gene035401:CDS
CACTAGTATGAACCATATCT+GGG 0.588414 8.2:+52874645 MS.gene035401:CDS
GCGAATCTAGAGGCAGCGTG+TGG 0.593354 8.2:+52874751 MS.gene035401:CDS
TTGTGCTTCACTGCTGCCGG+TGG 0.599417 8.2:-52875058 None:intergenic
GTATGAACCATATCTGGGAA+AGG 0.601010 8.2:+52874650 MS.gene035401:CDS
GGTCCAATAGGTGACACTCC+TGG 0.603194 8.2:+52873808 MS.gene035401:CDS
AATGCCTCTGTATAAACTTG+GGG 0.607132 8.2:+52873879 MS.gene035401:CDS
GAATCTAGAGGCAGCGTGTG+GGG 0.608035 8.2:+52874753 MS.gene035401:CDS
CCAAGAAGCTCCATAATGCA+AGG 0.608499 8.2:-52873461 None:intergenic
GAAGCAAGTTCTTCAATCTG+CGG 0.609928 8.2:+52871721 MS.gene035401:CDS
ATAATCTGTTCCCCATTCCA+GGG 0.611081 8.2:-52873758 None:intergenic
TGTGAGGAAGCAGGAAGATG+CGG 0.618720 8.2:+52871793 MS.gene035401:CDS
TTCTCCCCAAGTTTATACAG+AGG 0.622115 8.2:-52873883 None:intergenic
TGAAGAAAGGGGCACCAGGT+AGG 0.625137 8.2:+52873398 MS.gene035401:CDS
GGAGTGTCACCTATTGGACC+CGG 0.626244 8.2:-52873805 None:intergenic
CCAGGTAGGAACTCTTCTAG+TGG 0.630230 8.2:+52873412 MS.gene035401:CDS
TCCAAGCACGGAGAATGTGG+TGG 0.633458 8.2:+52874776 MS.gene035401:CDS
GCTCTCACACGCGAATCTAG+AGG 0.633561 8.2:+52874741 MS.gene035401:CDS
AGGTAGGAACTCTTCTAGTG+GGG 0.641354 8.2:+52873414 MS.gene035401:CDS
ATTGGGGAAACATGGAGCGT+CGG 0.642414 8.2:+52871679 MS.gene035401:CDS
GGAGAAATGGGATATTGCAA+TGG 0.644314 8.2:+52873900 MS.gene035401:CDS
GGTAGGAACTCTTCTAGTGG+GGG 0.667715 8.2:+52873415 MS.gene035401:CDS
AAAGTAGCTTTAATAACTGG+CGG 0.668949 8.2:+52871623 MS.gene035401:CDS
AACAAAATACTTCCAATAGG+CGG 0.675945 8.2:+52875014 MS.gene035401:CDS
TTGTTGGCGCTGAAAGATGG+TGG 0.684828 8.2:+52874707 MS.gene035401:CDS
ACTTAAGTATCTGAAGAAAG+GGG 0.691268 8.2:+52873387 MS.gene035401:CDS
CGTCACCAGAACATGACAGG+AGG 0.707318 8.2:+52874676 MS.gene035401:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AGATATAATTATGTAATTAT+AGG + chr8.2:52874214-52874233 MS.gene035401:intron 10.0%
!! GATATAATTATGTAATTATA+GGG + chr8.2:52874215-52874234 MS.gene035401:intron 10.0%
!! TAAAAATAATAATGCATAAA+AGG - chr8.2:52874250-52874269 None:intergenic 10.0%
!!! ATTTTCATCTTTTTAATTTA+AGG + chr8.2:52873537-52873556 MS.gene035401:intron 10.0%
!!! TAAAATTTTAATTATTCAAC+AGG + chr8.2:52873705-52873724 MS.gene035401:intron 10.0%
!!! TTTATGCATTATTATTTTTA+TGG + chr8.2:52874250-52874269 MS.gene035401:intron 10.0%
!!! TTTTTAATTTAAGGATTTAA+AGG + chr8.2:52873546-52873565 MS.gene035401:intron 10.0%
!!! AATTGATATTTTTGGTATAA+GGG - chr8.2:52874285-52874304 None:intergenic 15.0%
!!! ATATGTAGATTTTAAAATCA+AGG - chr8.2:52872831-52872850 None:intergenic 15.0%
!!! TAAGTATTTCTTTCATTTTA+AGG - chr8.2:52872194-52872213 None:intergenic 15.0%
!! AAAGATGAAAATTAACATCT+AGG - chr8.2:52873529-52873548 None:intergenic 20.0%
!! AAGCTTAAAGTAAGTTTAAT+GGG - chr8.2:52873686-52873705 None:intergenic 20.0%
!! ATTCAATTAACGTATGTATT+TGG + chr8.2:52872008-52872027 MS.gene035401:intron 20.0%
!! ATTTGAATTGCATAAAATCA+TGG + chr8.2:52872858-52872877 MS.gene035401:intron 20.0%
!! GAATCTAAAAAGTAAAATTG+AGG - chr8.2:52871992-52872011 None:intergenic 20.0%
!! GCAAAATAATATATCTTCAT+TGG - chr8.2:52873610-52873629 None:intergenic 20.0%
!! TAAGCTTAAAGTAAGTTTAA+TGG - chr8.2:52873687-52873706 None:intergenic 20.0%
!! TATACCAAAAATATCAATTG+TGG + chr8.2:52874286-52874305 MS.gene035401:intron 20.0%
!! TATTACAAAAATACGCAAAA+TGG - chr8.2:52874336-52874355 None:intergenic 20.0%
!!! AATGATTTTGCAATAACTTA+CGG - chr8.2:52873046-52873065 None:intergenic 20.0%
!!! ATTTGACTTTTAAGCATTTT+GGG + chr8.2:52871828-52871847 MS.gene035401:CDS 20.0%
!!! CAATTGATATTTTTGGTATA+AGG - chr8.2:52874286-52874305 None:intergenic 20.0%
!!! TGTCTATTTAGTAGTTATTT+TGG + chr8.2:52872135-52872154 MS.gene035401:intron 20.0%
!!! TTCATTATTGTTTGAAGTTT+TGG + chr8.2:52873324-52873343 MS.gene035401:intron 20.0%
! AAGTTATGAAAATGTTTCCA+AGG - chr8.2:52874042-52874061 None:intergenic 25.0%
! AATACATTTCTTAGAAATCG+AGG - chr8.2:52872335-52872354 None:intergenic 25.0%
! ACTTACTTAACCGTTTAAAA+AGG - chr8.2:52872435-52872454 None:intergenic 25.0%
! ATTATGATATTCGAGTCAAT+GGG + chr8.2:52873776-52873795 MS.gene035401:CDS 25.0%
! CATCAAATAGCTAATGTATA+TGG - chr8.2:52872047-52872066 None:intergenic 25.0%
! CATGATTAATTAGTAGTGTT+TGG + chr8.2:52874097-52874116 MS.gene035401:intron 25.0%
! CTAAAAAGTAAAATTGAGGA+CGG - chr8.2:52871988-52872007 None:intergenic 25.0%
! GGCTAAACAACTTAAAAAAA+AGG - chr8.2:52872414-52872433 None:intergenic 25.0%
! GGTTAATTAAGTTCAATTGA+TGG + chr8.2:52872879-52872898 MS.gene035401:intron 25.0%
! GTTAATCATGTTTAAATCTG+TGG - chr8.2:52872809-52872828 None:intergenic 25.0%
! TACCATTAATAATCATCTGT+GGG + chr8.2:52874503-52874522 MS.gene035401:intron 25.0%
! TGTAAATTAGATAAGAGTCT+TGG - chr8.2:52873239-52873258 None:intergenic 25.0%
! TTAATTAGTAGTGTTTGGTT+TGG + chr8.2:52874102-52874121 MS.gene035401:intron 25.0%
!! AAATTCTACAACCTTTTGAA+TGG - chr8.2:52872987-52873006 None:intergenic 25.0%
!! AGTATAAATCAGTTTTACAC+TGG + chr8.2:52873581-52873600 MS.gene035401:intron 25.0%
!! ATGCTATTTGAACATCAATT+TGG - chr8.2:52873016-52873035 None:intergenic 25.0%
!! CATTTCTCGTATTCAATTTT+AGG - chr8.2:52873289-52873308 None:intergenic 25.0%
!! TATAAGTTTTTATCCAAGCA+GGG + chr8.2:52872736-52872755 MS.gene035401:intron 25.0%
!! TTATAAGTTTTTATCCAAGC+AGG + chr8.2:52872735-52872754 MS.gene035401:intron 25.0%
!! TTTGAAATATCAACGCAATT+GGG + chr8.2:52871662-52871681 MS.gene035401:CDS 25.0%
!!! AGCTTTGGTTAATAGATTTT+CGG + chr8.2:52872479-52872498 MS.gene035401:intron 25.0%
!!! AGTTGTTTAGCCTTTTTAAA+CGG + chr8.2:52872422-52872441 MS.gene035401:intron 25.0%
!!! CTGTAAATGTTGTATTTTTG+TGG + chr8.2:52874002-52874021 MS.gene035401:intron 25.0%
!!! GATTTGACTTTTAAGCATTT+TGG + chr8.2:52871827-52871846 MS.gene035401:CDS 25.0%
AAATGCCTCTGTATAAACTT+GGG + chr8.2:52873878-52873897 MS.gene035401:CDS 30.0%
AACAAAATACTTCCAATAGG+CGG + chr8.2:52875014-52875033 MS.gene035401:CDS 30.0%
ACTTAAGTATCTGAAGAAAG+GGG + chr8.2:52873387-52873406 MS.gene035401:CDS 30.0%
AGCTTACGAAAACAACTTAT+AGG + chr8.2:52872634-52872653 MS.gene035401:intron 30.0%
AGGAACAAAATACTTCCAAT+AGG + chr8.2:52875011-52875030 MS.gene035401:CDS 30.0%
ATCAGAATCCTTCTATAATG+TGG + chr8.2:52873180-52873199 MS.gene035401:intron 30.0%
ATTTCTTAGAAATCGAGGTT+GGG - chr8.2:52872330-52872349 None:intergenic 30.0%
CACTTAAGTATCTGAAGAAA+GGG + chr8.2:52873386-52873405 MS.gene035401:CDS 30.0%
CTCTAATATGATCCATATGT+GGG + chr8.2:52874579-52874598 MS.gene035401:intron 30.0%
GATTATGATATTCGAGTCAA+TGG + chr8.2:52873775-52873794 MS.gene035401:CDS 30.0%
GTACCATTAATAATCATCTG+TGG + chr8.2:52874502-52874521 MS.gene035401:intron 30.0%
GTAGTGAAATTAGACAGTAT+AGG + chr8.2:52874185-52874204 MS.gene035401:intron 30.0%
TTCAAGCCAGAAATCTTAAA+AGG + chr8.2:52871599-52871618 MS.gene035401:CDS 30.0%
TTCCCACAGATGATTATTAA+TGG - chr8.2:52874508-52874527 None:intergenic 30.0%
TTGAAATATCAACGCAATTG+GGG + chr8.2:52871663-52871682 MS.gene035401:CDS 30.0%
TTGCAATTTCGATGCATTTA+GGG + chr8.2:52872354-52872373 MS.gene035401:intron 30.0%
TTTGCAATTTCGATGCATTT+AGG + chr8.2:52872353-52872372 MS.gene035401:intron 30.0%
! AACCTTTTGAATGGTTAACA+CGG - chr8.2:52872978-52872997 None:intergenic 30.0%
! CACACCACAATTGATATTTT+TGG - chr8.2:52874293-52874312 None:intergenic 30.0%
! GTTTGAAATATCAACGCAAT+TGG + chr8.2:52871661-52871680 MS.gene035401:CDS 30.0%
!! AAAGTAGCTTTAATAACTGG+CGG + chr8.2:52871623-52871642 MS.gene035401:CDS 30.0%
!! ATAAGTTTTGTGAGGTTGTT+TGG + chr8.2:52872539-52872558 MS.gene035401:intron 30.0%
!! CTACTATCATAAGTTTTGTG+AGG + chr8.2:52872531-52872550 MS.gene035401:intron 30.0%
!! GTTGTTTTCGTAAGCTATAT+AGG - chr8.2:52872630-52872649 None:intergenic 30.0%
!! TAAGTTTTGTGAGGTTGTTT+GGG + chr8.2:52872540-52872559 MS.gene035401:intron 30.0%
!! TTTAAGATTTCTGGCTTGAA+TGG - chr8.2:52871599-52871618 None:intergenic 30.0%
!!! ACTTTGCCTTTTAAGATTTC+TGG - chr8.2:52871608-52871627 None:intergenic 30.0%
!!! AGGATTTTTGTTGTTTTCGA+TGG + chr8.2:52871936-52871955 MS.gene035401:intron 30.0%
!!! ATTGGAAGTATTTTGTTCCT+AGG - chr8.2:52875011-52875030 None:intergenic 30.0%
!!! GATATTTTTGGTATAAGGGT+AGG - chr8.2:52874281-52874300 None:intergenic 30.0%
!!! TTGGAAGTATTTTGTTCCTA+GGG - chr8.2:52875010-52875029 None:intergenic 30.0%
AAAAGTAAAATTGAGGACGG+AGG - chr8.2:52871985-52872004 None:intergenic 35.0%
AATGCCTCTGTATAAACTTG+GGG + chr8.2:52873879-52873898 MS.gene035401:CDS 35.0%
AATTCATGTATCTGCAGCAA+AGG + chr8.2:52873489-52873508 MS.gene035401:CDS 35.0%
ACCATCAAAGTGATCATCAA+CGG + chr8.2:52874470-52874489 MS.gene035401:intron 35.0%
ACTAACGAAAAACAGCTTTG+AGG - chr8.2:52872162-52872181 None:intergenic 35.0%
AGGATACTAAAGACACTATG+TGG - chr8.2:52872394-52872413 None:intergenic 35.0%
AGTATCGCATATACCAAGTA+GGG - chr8.2:52873984-52874003 None:intergenic 35.0%
ATATGTCATGTATGCTTCAG+AGG - chr8.2:52874419-52874438 None:intergenic 35.0%
ATTAGTGCTACCTTGCATTA+TGG + chr8.2:52873451-52873470 MS.gene035401:CDS 35.0%
CAATAGCATAGTTCAATGAG+TGG - chr8.2:52872939-52872958 None:intergenic 35.0%
CACTAGTATGAACCATATCT+GGG + chr8.2:52874645-52874664 MS.gene035401:CDS 35.0%
CATTTCTTAGAAATCGAGGT+TGG - chr8.2:52872331-52872350 None:intergenic 35.0%
CCACATATGGATCATATTAG+AGG - chr8.2:52874581-52874600 None:intergenic 35.0%
CCTCTAATATGATCCATATG+TGG + chr8.2:52874578-52874597 MS.gene035401:intron 35.0%
GAAATGCCTCTGTATAAACT+TGG + chr8.2:52873877-52873896 MS.gene035401:CDS 35.0%
GCACTTAAGTATCTGAAGAA+AGG + chr8.2:52873385-52873404 MS.gene035401:CDS 35.0%
GGATACTAAAGACACTATGT+GGG - chr8.2:52872393-52872412 None:intergenic 35.0%
GTATAAACTTGGGGAGAAAT+GGG + chr8.2:52873888-52873907 MS.gene035401:CDS 35.0%
GTTGTTAAAGAGTCTCACAT+CGG + chr8.2:52872219-52872238 MS.gene035401:intron 35.0%
TGATTCCACTACAAGAAACT+TGG + chr8.2:52873735-52873754 MS.gene035401:CDS 35.0%
TGCAATTTCGATGCATTTAG+GGG + chr8.2:52872355-52872374 MS.gene035401:intron 35.0%
TGTATAAACTTGGGGAGAAA+TGG + chr8.2:52873887-52873906 MS.gene035401:CDS 35.0%
! ACTACTCATCTGAAACACAA+TGG - chr8.2:52873212-52873231 None:intergenic 35.0%
! GTGTTTAGGATTCCATGTTT+GGG + chr8.2:52874133-52874152 MS.gene035401:intron 35.0%
! TGACTTTTAAGCATTTTGGG+AGG + chr8.2:52871831-52871850 MS.gene035401:CDS 35.0%
! TTGGTTAATAGATTTTCGGC+TGG + chr8.2:52872483-52872502 MS.gene035401:intron 35.0%
!! CTACTTCTCATTGACTTTGA+AGG - chr8.2:52874065-52874084 None:intergenic 35.0%
!! GCTGCTGTATATTTTTCAGT+TGG - chr8.2:52874988-52875007 None:intergenic 35.0%
!! GGCAAAGTAGCTTTAATAAC+TGG + chr8.2:52871620-52871639 MS.gene035401:CDS 35.0%
!! TAATAGATTTTCGGCTGGTT+TGG + chr8.2:52872488-52872507 MS.gene035401:intron 35.0%
!! TTTTTGGTATAAGGGTAGGA+AGG - chr8.2:52874277-52874296 None:intergenic 35.0%
!!! GTTTTGGATATCGATTCTGT+TGG + chr8.2:52873340-52873359 MS.gene035401:intron 35.0%
AAGTGTCTATACGTGTACGT+GGG + chr8.2:52872260-52872279 MS.gene035401:intron 40.0%
ACCAAAGCAAAACCCAAACA+TGG - chr8.2:52874148-52874167 None:intergenic 40.0%
AGTTCTTCAATCTGCGGTTT+CGG + chr8.2:52871727-52871746 MS.gene035401:CDS 40.0%
ATAATCTGTTCCCCATTCCA+GGG - chr8.2:52873761-52873780 None:intergenic 40.0%
ATATGTGGGAAAGTCACCAT+CGG + chr8.2:52874593-52874612 MS.gene035401:intron 40.0%
ATGCTATTGCTAACCACATG+CGG + chr8.2:52872950-52872969 MS.gene035401:intron 40.0%
ATTCTTGTTAATGCTGCTGC+TGG + chr8.2:52871860-52871879 MS.gene035401:CDS 40.0%
CAGTATCGCATATACCAAGT+AGG - chr8.2:52873985-52874004 None:intergenic 40.0%
CCACTAGTATGAACCATATC+TGG + chr8.2:52874644-52874663 MS.gene035401:CDS 40.0%
CCAGATATGGTTCATACTAG+TGG - chr8.2:52874647-52874666 None:intergenic 40.0%
CCATCAAAGTGATCATCAAC+GGG + chr8.2:52874471-52874490 MS.gene035401:intron 40.0%
CTAATACAACCCCACAAAAC+CGG - chr8.2:52872306-52872325 None:intergenic 40.0%
GAAAAATATACAGCAGCCCT+AGG + chr8.2:52874991-52875010 MS.gene035401:intron 40.0%
GAAGCAAGTTCTTCAATCTG+CGG + chr8.2:52871721-52871740 MS.gene035401:CDS 40.0%
GACCGTGTTAACCATTCAAA+AGG + chr8.2:52872973-52872992 MS.gene035401:intron 40.0%
GGAGAAATGGGATATTGCAA+TGG + chr8.2:52873900-52873919 MS.gene035401:CDS 40.0%
GGTCATTGCCACATTATAGA+AGG - chr8.2:52873191-52873210 None:intergenic 40.0%
GTATGAACCATATCTGGGAA+AGG + chr8.2:52874650-52874669 MS.gene035401:CDS 40.0%
TAAGTGTCTATACGTGTACG+TGG + chr8.2:52872259-52872278 MS.gene035401:intron 40.0%
TATACCAAGTAGGGAACACT+TGG - chr8.2:52873975-52873994 None:intergenic 40.0%
TATCCAAGCAGGGTCATATT+AGG + chr8.2:52872746-52872765 MS.gene035401:intron 40.0%
TGACTCACGTGTAAATGAAG+TGG + chr8.2:52872455-52872474 MS.gene035401:intron 40.0%
TGATCATCAACGGGAAAAGA+AGG + chr8.2:52874480-52874499 MS.gene035401:intron 40.0%
TGTAAATGAAGTGGCAGCTT+TGG + chr8.2:52872464-52872483 MS.gene035401:intron 40.0%
TTAACGAGAGTAGAGTGATG+TGG - chr8.2:52873632-52873651 None:intergenic 40.0%
TTATCCAAGTGTTCCCTACT+TGG + chr8.2:52873968-52873987 MS.gene035401:intron 40.0%
TTCTCCCCAAGTTTATACAG+AGG - chr8.2:52873886-52873905 None:intergenic 40.0%
TTCTTGTTAATGCTGCTGCT+GGG + chr8.2:52871861-52871880 MS.gene035401:CDS 40.0%
TTGTCTGTGACAAGTCTCAA+AGG - chr8.2:52873135-52873154 None:intergenic 40.0%
! AAACTGGCTCCTGAAGAAAT+AGG + chr8.2:52873838-52873857 MS.gene035401:CDS 40.0%
! GGTGTTTAGGATTCCATGTT+TGG + chr8.2:52874132-52874151 MS.gene035401:intron 40.0%
!! TCCATGTTTGGGTTTTGCTT+TGG + chr8.2:52874144-52874163 MS.gene035401:intron 40.0%
!! TTCTGGCTTGAATGGTGATT+CGG - chr8.2:52871591-52871610 None:intergenic 40.0%
AAGAAACTTGGCCCTGGAAT+GGG + chr8.2:52873747-52873766 MS.gene035401:CDS 45.0%
ACACCTAATATGACCCTGCT+TGG - chr8.2:52872752-52872771 None:intergenic 45.0%
ACCACTGGATTAATCGTCGA+TGG + chr8.2:52874543-52874562 MS.gene035401:intron 45.0%
AGGTAGGAACTCTTCTAGTG+GGG + chr8.2:52873414-52873433 MS.gene035401:CDS 45.0%
ATTCCAGCTGTTGGGTTTGA+AGG + chr8.2:52871767-52871786 MS.gene035401:CDS 45.0%
CAGGTAGGAACTCTTCTAGT+GGG + chr8.2:52873413-52873432 MS.gene035401:CDS 45.0%
CATAATCTGTTCCCCATTCC+AGG - chr8.2:52873762-52873781 None:intergenic 45.0%
CCAAGAAGCTCCATAATGCA+AGG - chr8.2:52873464-52873483 None:intergenic 45.0%
CCACTGGATTAATCGTCGAT+GGG + chr8.2:52874544-52874563 MS.gene035401:intron 45.0%
CCTGAAGAAATAGGTAGCAG+AGG + chr8.2:52873847-52873866 MS.gene035401:CDS 45.0%
CCTTGCATTATGGAGCTTCT+TGG + chr8.2:52873461-52873480 MS.gene035401:CDS 45.0%
CGATTAATCCAGTGGTGACT+CGG - chr8.2:52874539-52874558 None:intergenic 45.0%
CTCTTCTTAGCATCAGATGC+AGG + chr8.2:52873928-52873947 MS.gene035401:CDS 45.0%
GATGGTGACTTTCCCACATA+TGG - chr8.2:52874594-52874613 None:intergenic 45.0%
TCAACGCAATTGGGGAAACA+TGG + chr8.2:52871671-52871690 MS.gene035401:CDS 45.0%
TCACCTGTTCGAAACCCATT+CGG - chr8.2:52871917-52871936 None:intergenic 45.0%
TGCTATTGCTAACCACATGC+GGG + chr8.2:52872951-52872970 MS.gene035401:intron 45.0%
TGGTGACTATCTGAAAGCCT+TGG + chr8.2:52874022-52874041 MS.gene035401:intron 45.0%
TTCCAGCTGTTGGGTTTGAA+GGG + chr8.2:52871768-52871787 MS.gene035401:CDS 45.0%
TTTAATAACTGGCGGAGCGT+CGG + chr8.2:52871631-52871650 MS.gene035401:CDS 45.0%
! CCTCTGCTACCTATTTCTTC+AGG - chr8.2:52873850-52873869 None:intergenic 45.0%
! GAATTTTCTTGCTGCTGCTG+AGG + chr8.2:52871883-52871902 MS.gene035401:CDS 45.0%
!! AGTGTTTGGTTTGGACTTGC+TGG + chr8.2:52874111-52874130 MS.gene035401:intron 45.0%
!! CCCGTTGATGATCACTTTGA+TGG - chr8.2:52874474-52874493 None:intergenic 45.0%
!! GTTTGGACTTGCTGGTGTTT+AGG + chr8.2:52874119-52874138 MS.gene035401:intron 45.0%
!! TTGGTGACAGTCTAGCTTTC+TGG + chr8.2:52874163-52874182 MS.gene035401:intron 45.0%
!!! ATAACCAGCTGCCACTTTTC+TGG - chr8.2:52874905-52874924 None:intergenic 45.0%
!!! GATTTTCGGCTGGTTTGGAT+TGG + chr8.2:52872493-52872512 MS.gene035401:intron 45.0%
ACAGGAGGAGTTGCGATTGT+TGG + chr8.2:52874691-52874710 MS.gene035401:CDS 50.0%
ACCATCGGATTGATCGTCGA+TGG + chr8.2:52874608-52874627 MS.gene035401:intron 50.0%
AGAAACTTGGCCCTGGAATG+GGG + chr8.2:52873748-52873767 MS.gene035401:CDS 50.0%
AGTCGTCACCAGAACATGAC+AGG + chr8.2:52874673-52874692 MS.gene035401:CDS 50.0%
ATGGTGTGAAGGAAGGTCAC+TGG + chr8.2:52874938-52874957 MS.gene035401:intron 50.0%
ATTGGGGAAACATGGAGCGT+CGG + chr8.2:52871679-52871698 MS.gene035401:CDS 50.0%
CAACTCCTCCTGTCATGTTC+TGG - chr8.2:52874684-52874703 None:intergenic 50.0%
CAAGAAACTTGGCCCTGGAA+TGG + chr8.2:52873746-52873765 MS.gene035401:CDS 50.0%
CACTACAAGAAACTTGGCCC+TGG + chr8.2:52873741-52873760 MS.gene035401:CDS 50.0%
CACTCCTGGCATGAGTAAAC+TGG + chr8.2:52873822-52873841 MS.gene035401:CDS 50.0%
CAGGGCCAAGTTTCTTGTAG+TGG - chr8.2:52873743-52873762 None:intergenic 50.0%
CCACTAGAAGAGTTCCTACC+TGG - chr8.2:52873415-52873434 None:intergenic 50.0%
CCAGGTAGGAACTCTTCTAG+TGG + chr8.2:52873412-52873431 MS.gene035401:CDS 50.0%
CCATCGGATTGATCGTCGAT+GGG + chr8.2:52874609-52874628 MS.gene035401:intron 50.0%
CCCATCGACGATTAATCCAG+TGG - chr8.2:52874547-52874566 None:intergenic 50.0%
CGCTTTCGATTCCAGCTGTT+GGG + chr8.2:52871759-52871778 MS.gene035401:CDS 50.0%
CTGAGGATCTTTCGCCGAAT+GGG + chr8.2:52871900-52871919 MS.gene035401:CDS 50.0%
GACGACTCCTTTCCCAGATA+TGG - chr8.2:52874660-52874679 None:intergenic 50.0%
GATCGTCGATGGGAAGGAAA+AGG + chr8.2:52874619-52874638 MS.gene035401:intron 50.0%
GGTAGGAACTCTTCTAGTGG+GGG + chr8.2:52873415-52873434 MS.gene035401:CDS 50.0%
GGTTATTGCACAGCGGGAAA+TGG + chr8.2:52874919-52874938 MS.gene035401:intron 50.0%
GTGAAGGAAGGTCACTGGAA+GGG + chr8.2:52874943-52874962 MS.gene035401:intron 50.0%
TATAGTCACCGAGTCACCAC+TGG + chr8.2:52874528-52874547 MS.gene035401:intron 50.0%
TCCAGCTGTTGGGTTTGAAG+GGG + chr8.2:52871769-52871788 MS.gene035401:CDS 50.0%
TCGAGTCAATGGGATTGCAC+CGG + chr8.2:52873786-52873805 MS.gene035401:CDS 50.0%
TCGCTTTCGATTCCAGCTGT+TGG + chr8.2:52871758-52871777 MS.gene035401:CDS 50.0%
TGTGAAGGAAGGTCACTGGA+AGG + chr8.2:52874942-52874961 MS.gene035401:intron 50.0%
TGTGAGGAAGCAGGAAGATG+CGG + chr8.2:52871793-52871812 MS.gene035401:CDS 50.0%
TTGGGTTTGAAGGGGATGTG+AGG + chr8.2:52871777-52871796 MS.gene035401:CDS 50.0%
! CGATTGTTGGCGCTGAAAGA+TGG + chr8.2:52874704-52874723 MS.gene035401:CDS 50.0%
! GAATGGGTTTCGAACAGGTG+AGG + chr8.2:52871916-52871935 MS.gene035401:intron 50.0%
! GTTGGGTTGCACCAGAAAAG+TGG + chr8.2:52874891-52874910 MS.gene035401:intron 50.0%
! TTAATAACTGGCGGAGCGTC+GGG + chr8.2:52871632-52871651 MS.gene035401:CDS 50.0%
! TTGTTGGCGCTGAAAGATGG+TGG + chr8.2:52874707-52874726 MS.gene035401:CDS 50.0%
!! AATCCAGAGGTGGTTGGTGA+CGG + chr8.2:52874860-52874879 MS.gene035401:intron 50.0%
!! ATGCCAGGAGTGTCACCTAT+TGG - chr8.2:52873814-52873833 None:intergenic 50.0%
!! TATCTGAAGAAAGGGGCACC+AGG + chr8.2:52873394-52873413 MS.gene035401:CDS 50.0%
!!! ACCTCACATGCCGGTTTTGT+GGG + chr8.2:52872293-52872312 MS.gene035401:intron 50.0%
ACCACCACATTCTCCGTGCT+TGG - chr8.2:52874780-52874799 None:intergenic 55.0%
CAAAACCGGCATGTGAGGTG+AGG - chr8.2:52872292-52872311 None:intergenic 55.0%
CACAGCGGGAAATGGTGTGA+AGG + chr8.2:52874927-52874946 MS.gene035401:intron 55.0%
CCAACCACCTCTGGATTCTC+CGG - chr8.2:52874857-52874876 None:intergenic 55.0%
CCCATCGACGATCAATCCGA+TGG - chr8.2:52874612-52874631 None:intergenic 55.0%
CGAATCTAGAGGCAGCGTGT+GGG + chr8.2:52874752-52874771 MS.gene035401:CDS 55.0%
CGAGTCAATGGGATTGCACC+GGG + chr8.2:52873787-52873806 MS.gene035401:CDS 55.0%
CGGATTGATCGTCGATGGGA+AGG + chr8.2:52874613-52874632 MS.gene035401:intron 55.0%
CGTCACCAGAACATGACAGG+AGG + chr8.2:52874676-52874695 MS.gene035401:CDS 55.0%
GAATCTAGAGGCAGCGTGTG+GGG + chr8.2:52874753-52874772 MS.gene035401:CDS 55.0%
GCAATCCTCACCTCACATGC+CGG + chr8.2:52872284-52872303 MS.gene035401:intron 55.0%
GCAGCTGGTTATTGCACAGC+GGG + chr8.2:52874913-52874932 MS.gene035401:intron 55.0%
GCGGGAAATGGTGTGAAGGA+AGG + chr8.2:52874931-52874950 MS.gene035401:intron 55.0%
GCTCTCACACGCGAATCTAG+AGG + chr8.2:52874741-52874760 MS.gene035401:CDS 55.0%
GCTGAGGATCTTTCGCCGAA+TGG + chr8.2:52871899-52871918 MS.gene035401:CDS 55.0%
GGAGCCAGTTTACTCATGCC+AGG - chr8.2:52873829-52873848 None:intergenic 55.0%
GGCAGCTGGTTATTGCACAG+CGG + chr8.2:52874912-52874931 MS.gene035401:intron 55.0%
GGTCCAATAGGTGACACTCC+TGG + chr8.2:52873808-52873827 MS.gene035401:CDS 55.0%
TAAAGAACCACCGTGCTCGC+CGG + chr8.2:52874835-52874854 MS.gene035401:intron 55.0%
TCCAAGCACGGAGAATGTGG+TGG + chr8.2:52874776-52874795 MS.gene035401:CDS 55.0%
TCCCCTTCAAACCCAACAGC+TGG - chr8.2:52871773-52871792 None:intergenic 55.0%
TGAAGGGGATGTGAGGAAGC+AGG + chr8.2:52871784-52871803 MS.gene035401:CDS 55.0%
TGCACCAGAAAAGTGGCAGC+TGG + chr8.2:52874898-52874917 MS.gene035401:intron 55.0%
! GAGAATGTGGTGGTGCGTGA+AGG + chr8.2:52874786-52874805 MS.gene035401:intron 55.0%
! GGAGTGTCACCTATTGGACC+CGG - chr8.2:52873808-52873827 None:intergenic 55.0%
! TCGCCGAATGGGTTTCGAAC+AGG + chr8.2:52871911-52871930 MS.gene035401:CDS 55.0%
!! TGAAGAAAGGGGCACCAGGT+AGG + chr8.2:52873398-52873417 MS.gene035401:CDS 55.0%
!!! CACCTCACATGCCGGTTTTG+TGG + chr8.2:52872292-52872311 MS.gene035401:intron 55.0%
!!! CCTCACATGCCGGTTTTGTG+GGG + chr8.2:52872294-52872313 MS.gene035401:intron 55.0%
CCCCACAAAACCGGCATGTG+AGG - chr8.2:52872297-52872316 None:intergenic 60.0%
CCGGAGAATCCAGAGGTGGT+TGG + chr8.2:52874854-52874873 MS.gene035401:intron 60.0%
CTGGTGGCAAATGCCACCAC+CGG + chr8.2:52875042-52875061 MS.gene035401:CDS 60.0%
GCGAATCTAGAGGCAGCGTG+TGG + chr8.2:52874751-52874770 MS.gene035401:CDS 60.0%
GGGATTGCACCGGGTCCAAT+AGG + chr8.2:52873796-52873815 MS.gene035401:CDS 60.0%
GGGTCCAAGCACGGAGAATG+TGG + chr8.2:52874773-52874792 MS.gene035401:CDS 60.0%
GGTTAACACGGTCCCGCATG+TGG - chr8.2:52872966-52872985 None:intergenic 60.0%
TCTGGATTCTCCGGCGAGCA+CGG - chr8.2:52874848-52874867 None:intergenic 60.0%
!! AGGTGGTTGGTGACGGTGCT+CGG + chr8.2:52874867-52874886 MS.gene035401:intron 60.0%
!! CGGTTGCTGTGATGGGTCGT+CGG + chr8.2:52871699-52871718 MS.gene035401:CDS 60.0%
!! CTTCCAATAGGCGGTGCTGC+TGG + chr8.2:52875023-52875042 MS.gene035401:CDS 60.0%
!! GGAGCGTCGGTTGCTGTGAT+GGG + chr8.2:52871692-52871711 MS.gene035401:CDS 60.0%
!! TGGAGCGTCGGTTGCTGTGA+TGG + chr8.2:52871691-52871710 MS.gene035401:CDS 60.0%
!! TGGTGACGGTGCTCGGTGTT+GGG + chr8.2:52874874-52874893 MS.gene035401:intron 60.0%
!! TTGGTGACGGTGCTCGGTGT+TGG + chr8.2:52874873-52874892 MS.gene035401:intron 60.0%
AAGGCGCATGTGGTGGCTGG+TGG + chr8.2:52874805-52874824 MS.gene035401:intron 65.0%
CAGCGTGTGGGGTCCAAGCA+CGG + chr8.2:52874764-52874783 MS.gene035401:CDS 65.0%
CCACCAGCAGCACCGCCTAT+TGG - chr8.2:52875029-52875048 None:intergenic 65.0%
CTCGCCGGAGAATCCAGAGG+TGG + chr8.2:52874850-52874869 MS.gene035401:intron 65.0%
GCACCGTCACCAACCACCTC+TGG - chr8.2:52874866-52874885 None:intergenic 65.0%
GTGCTCGCCGGAGAATCCAG+AGG + chr8.2:52874847-52874866 MS.gene035401:intron 65.0%
! GTGAAGGCGCATGTGGTGGC+TGG + chr8.2:52874802-52874821 MS.gene035401:intron 65.0%
! GTGCGTGAAGGCGCATGTGG+TGG + chr8.2:52874798-52874817 MS.gene035401:intron 65.0%
! GTGGTGCGTGAAGGCGCATG+TGG + chr8.2:52874795-52874814 MS.gene035401:intron 65.0%
!! ACTGGCGGAGCGTCGGGAAT+TGG + chr8.2:52871638-52871657 MS.gene035401:CDS 65.0%
!! CCAATAGGCGGTGCTGCTGG+TGG + chr8.2:52875026-52875045 MS.gene035401:CDS 65.0%
!! CTGGCGGAGCGTCGGGAATT+GGG + chr8.2:52871639-52871658 MS.gene035401:CDS 65.0%
GGATTCTCCGGCGAGCACGG+TGG - chr8.2:52874845-52874864 None:intergenic 70.0%


Chromosome Type Strat End Strand Name
chr8.2 gene 52871575 52875073 52871575 ID=MS.gene035401
chr8.2 mRNA 52871575 52875073 52871575 ID=MS.gene035401.t1;Parent=MS.gene035401
chr8.2 exon 52871575 52871932 52871575 ID=MS.gene035401.t1.exon1;Parent=MS.gene035401.t1
chr8.2 CDS 52871575 52871932 52871575 ID=cds.MS.gene035401.t1;Parent=MS.gene035401.t1
chr8.2 exon 52873341 52873510 52873341 ID=MS.gene035401.t1.exon2;Parent=MS.gene035401.t1
chr8.2 CDS 52873341 52873510 52873341 ID=cds.MS.gene035401.t1;Parent=MS.gene035401.t1
chr8.2 exon 52873727 52873949 52873727 ID=MS.gene035401.t1.exon3;Parent=MS.gene035401.t1
chr8.2 CDS 52873727 52873949 52873727 ID=cds.MS.gene035401.t1;Parent=MS.gene035401.t1
chr8.2 exon 52874635 52874797 52874635 ID=MS.gene035401.t1.exon4;Parent=MS.gene035401.t1
chr8.2 CDS 52874635 52874797 52874635 ID=cds.MS.gene035401.t1;Parent=MS.gene035401.t1
chr8.2 exon 52875004 52875073 52875004 ID=MS.gene035401.t1.exon5;Parent=MS.gene035401.t1
chr8.2 CDS 52875004 52875073 52875004 ID=cds.MS.gene035401.t1;Parent=MS.gene035401.t1
Gene Sequence

>MS.gene035401

ATGGTAGCTTCAACCGAATCACCATTCAAGCCAGAAATCTTAAAAGGCAAAGTAGCTTTAATAACTGGCGGAGCGTCGGGAATTGGGTTTGAAATATCAACGCAATTGGGGAAACATGGAGCGTCGGTTGCTGTGATGGGTCGTCGGAAGCAAGTTCTTCAATCTGCGGTTTCGGTTCTTCAATCGCTTTCGATTCCAGCTGTTGGGTTTGAAGGGGATGTGAGGAAGCAGGAAGATGCGGCGAGAGTTGTTGATTTGACTTTTAAGCATTTTGGGAGGATTGATATTCTTGTTAATGCTGCTGCTGGGAATTTTCTTGCTGCTGCTGAGGATCTTTCGCCGAATGGGTTTCGAACAGGTGAGGATTTTTGTTGTTTTCGATGGAACAGTTGTATTAAACAATTCTTCCTCCGTCCTCAATTTTACTTTTTAGATTCAATTAACGTATGTATTTGGTCTATATTAGAGACCATATACATTAGCTATTTGATGAATCTCAAAAGTGATTTTTTTTGCTTATAATTGAGACTAGATAGAGTATGAATATCTAGCAAATACATTGTCTATTTAGTAGTTATTTTGGTCCTCAAAGCTGTTTTTCGTTAGTCAATCTAGTCCTTAAAATGAAAGAAATACTTATGAATGTTGTTAAAGAGTCTCACATCGGTTGAGAGATGATTTGAATAAGTGTCTATACGTGTACGTGGGAGCAATCCTCACCTCACATGCCGGTTTTGTGGGGTTGTATTAGACCCAACCTCGATTTCTAAGAAATGTATTTGCAATTTCGATGCATTTAGGGGATGACAGAGCGTCCCACATAGTGTCTTTAGTATCCTTTTTTTTAAGTTGTTTAGCCTTTTTAAACGGTTAAGTAAGTTGACTCACGTGTAAATGAAGTGGCAGCTTTGGTTAATAGATTTTCGGCTGGTTTGGATTGGCTTATTTGAGCTTATCTACTATCATAAGTTTTGTGAGGTTGTTTGGGAGAAATTAAGAAACTAACACATGATATGTTCATAAGCTGTTTTCAACTTATTTTCGTTAGTTCTCCTATATAGCTTACGAAAACAACTTATAGGTTATATGAAAACAATTTAAGTTTATTTTATCATGTGCTATAGAAATAGCTTATGCATAAGTGCGTATCATAATAAGTGTTATAAGTTTTTATCCAAGCAGGGTCATATTAGGTGTAATGACTTATGTACAATCTACTGAACTTTATCAACCACAGATTTAAACATGATTAACCTTGATTTTAAAATCTACATATCATTTGAATTTGAATTGCATAAAATCATGGTTAATTAAGTTCAATTGATGGATATTGTGTTATCAGATACTGATATATCTACTAACCACTCATTGAACTATGCTATTGCTAACCACATGCGGGACCGTGTTAACCATTCAAAAGGTTGTAGAATTTTCTTATCCAAATTGATGTTCAAATAGCATTTCTGTTCCGTAAGTTATTGCAAAATCATTTATAGAATTTTCACTAACTCGTTCTACACGAGTACATTTAAAATTTAAAATATGTGTATGATCATTCCTTTGAGACTTGTCACAGACAAAATTTTCATAACATTGCTCATAGAAATCAGAATCCTTCTATAATGTGGCAATGACCATTGTGTTTCAGATGAGTAGTTATTCCAAGACTCTTATCTAATTTACAATTTCTCTTAACAAGATGCAACTTTATCCTAAAATTGAATACGAGAAATGAATTGATGATCAATTTTCATTATTGTTTGAAGTTTTGGATATCGATTCTGTTGGCACATTCACTATGTGTCATGAAGCACTTAAGTATCTGAAGAAAGGGGCACCAGGTAGGAACTCTTCTAGTGGGGGATTAATAATAAACATTAGTGCTACCTTGCATTATGGAGCTTCTTGGTATCAAATTCATGTATCTGCAGCAAAGGTTTGTATCACAGTACCTAGATGTTAATTTTCATCTTTTTAATTTAAGGATTTAAAGGTTATGCACTATCAGTATAAATCAGTTTTACACTGGCATCCAATGAAGATATATTATTTTGCCACATCACTCTACTCTCGTTAAATGTGAGTTTAAATTTGATTTATATTGCATGCCCATTAAACTTACTTTAAGCTTAAAATTTTAATTATTCAACAGGCAGCTGTTGATTCCACTACAAGAAACTTGGCCCTGGAATGGGGAACAGATTATGATATTCGAGTCAATGGGATTGCACCGGGTCCAATAGGTGACACTCCTGGCATGAGTAAACTGGCTCCTGAAGAAATAGGTAGCAGAGGCAGAGATGAAATGCCTCTGTATAAACTTGGGGAGAAATGGGATATTGCAATGGCTGCTCTCTTCTTAGCATCAGATGCAGGTTAGTAACTTTGTGCAGTTATCCAAGTGTTCCCTACTTGGTATATGCGATACTGTAAATGTTGTATTTTTGTGGTGACTATCTGAAAGCCTTGGAAACATTTTCATAACTTCCTTCAAAGTCAATGAGAAGTAGTTAGATTTCTTGCATGATTAATTAGTAGTGTTTGGTTTGGACTTGCTGGTGTTTAGGATTCCATGTTTGGGTTTTGCTTTGGTGACAGTCTAGCTTTCTGGTAGTGAAATTAGACAGTATAGGTTCACAAGATATAATTATGTAATTATAGGGAAGTAAACTCCTTTTATGCATTATTATTTTTATGGTCCTTCCTACCCTTATACCAAAAATATCAATTGTGGTGTGTGTCTTTAGAGAAAATGTATCCATTTTGCGTATTTTTGTAATACGTATTTGTAAAATATGTGAAGTCTGTGTAAACTCTCTGTGTTTAGAATGAGATCACACACCTCTGAAGCATACATGACATATGCATAAAGCTTGTTACAACAAAACAAAAGTCACCATCAAAGTGATCATCAACGGGAAAAGAAGGTACCATTAATAATCATCTGTGGGAATATAGTCACCGAGTCACCACTGGATTAATCGTCGATGGGAAGAAACTGCACCTCTAATATGATCCATATGTGGGAAAGTCACCATCGGATTGATCGTCGATGGGAAGGAAAAGGCACCACTAGTATGAACCATATCTGGGAAAGGAGTCGTCACCAGAACATGACAGGAGGAGTTGCGATTGTTGGCGCTGAAAGATGGTGGCTAGAGAATGTGCTCTCACACGCGAATCTAGAGGCAGCGTGTGGGGTCCAAGCACGGAGAATGTGGTGGTGCGTGAAGGCGCATGTGGTGGCTGGTGGCAGTGATTAAAGAACCACCGTGCTCGCCGGAGAATCCAGAGGTGGTTGGTGACGGTGCTCGGTGTTGGGTTGCACCAGAAAAGTGGCAGCTGGTTATTGCACAGCGGGAAATGGTGTGAAGGAAGGTCACTGGAAGGGATGAGCACAGTGATAAACACCAACTGAAAAATATACAGCAGCCCTAGGAACAAAATACTTCCAATAGGCGGTGCTGCTGGTGGCAAATGCCACCACCGGCAGCAGTGA
Protein sequence

>MS.gene035401.t1

MVASTESPFKPEILKGKVALITGGASGIGFEISTQLGKHGASVAVMGRRKQVLQSAVSVLQSLSIPAVGFEGDVRKQEDAARVVDLTFKHFGRIDILVNAAAGNFLAAAEDLSPNGFRTVLDIDSVGTFTMCHEALKYLKKGAPGRNSSSGGLIINISATLHYGASWYQIHVSAAKAAVDSTTRNLALEWGTDYDIRVNGIAPGPIGDTPGMSKLAPEEIGSRGRDEMPLYKLGEKWDIAMAALFLASDAGKGTTSMNHIWERSRHQNMTGGVAIVGAERWWLENVLSHANLEAACGVQARRMWCSPRNKILPIGGAAGGKCHHRQQ