Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene67886.t1 | KEH37120.1 | 96.8 | 281 | 8 | 1 | 1 | 281 | 1 | 280 | 2.10E-145 | 525 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene67886.t1 | Q9P7I6 | 30.1 | 272 | 158 | 9 | 23 | 281 | 2 | 254 | 2.4e-20 | 100.9 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene67886.t1 | A0A072VG12 | 96.8 | 281 | 8 | 1 | 1 | 281 | 1 | 280 | 1.5e-145 | 525.0 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene051228 | MS.gene67886 | 0.807122 | 5.90E-50 | -1.69E-46 |
| MS.gene053384 | MS.gene67886 | 0.821673 | 3.56E-53 | -1.69E-46 |
| MS.gene056609 | MS.gene67886 | 0.821676 | 3.56E-53 | -1.69E-46 |
| MS.gene056719 | MS.gene67886 | 0.821562 | 3.78E-53 | -1.69E-46 |
| MS.gene058082 | MS.gene67886 | 0.806029 | 1.00E-49 | -1.69E-46 |
| MS.gene059676 | MS.gene67886 | 0.808051 | 3.74E-50 | -1.69E-46 |
| MS.gene060818 | MS.gene67886 | 0.809802 | 1.58E-50 | -1.69E-46 |
| MS.gene060981 | MS.gene67886 | 0.809015 | 2.33E-50 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene035406 | MS.gene67886 | PPI |
| MS.gene035412 | MS.gene67886 | PPI |
| MS.gene068987 | MS.gene67886 | PPI |
| MS.gene38834 | MS.gene67886 | PPI |
| MS.gene67886 | MS.gene36124 | PPI |
| MS.gene035401 | MS.gene67886 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene67886.t1 | MTR_2g031990 | 96.797 | 281 | 8 | 1 | 1 | 281 | 1 | 280 | 0.0 | 548 |
| MS.gene67886.t1 | MTR_4g097510 | 27.358 | 212 | 123 | 10 | 28 | 235 | 6 | 190 | 4.67e-11 | 62.4 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene67886.t1 | AT4G20760 | 75.686 | 255 | 62 | 0 | 27 | 281 | 44 | 298 | 9.63e-146 | 410 |
| MS.gene67886.t1 | AT4G20760 | 75.686 | 255 | 62 | 0 | 27 | 281 | 64 | 318 | 8.54e-145 | 409 |
Find 64 sgRNAs with CRISPR-Local
Find 177 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TAATGATGTGCAACAACTTT+TGG | 0.278163 | 2.4:-58095465 | None:intergenic |
| AGAAACCACATTGAACAAAT+TGG | 0.288395 | 2.4:+58094598 | MS.gene67886:intron |
| TTACCTGGTTGCAGCACTTC+AGG | 0.309608 | 2.4:-58094291 | None:intergenic |
| ATCTTTAATGCTTTCATATG+AGG | 0.350695 | 2.4:+58094628 | MS.gene67886:CDS |
| TGAAGAAGAGAATGCTCTTC+TGG | 0.356280 | 2.4:-58092664 | None:intergenic |
| CAGTTGATGCATTAGGATTA+CGG | 0.378721 | 2.4:-58093037 | None:intergenic |
| AGTGCAAGGGTTGCATCTAT+TGG | 0.379178 | 2.4:+58094921 | MS.gene67886:CDS |
| CATTAATGAGAAGGTTTAGA+TGG | 0.381244 | 2.4:-58094248 | None:intergenic |
| CGTAATCCTAATGCATCAAC+TGG | 0.384959 | 2.4:+58093038 | MS.gene67886:CDS |
| AACTGGGCTTCTTCATTTGA+AGG | 0.387513 | 2.4:+58093055 | MS.gene67886:CDS |
| TCATCATCTTCTCAAGCTAA+TGG | 0.389755 | 2.4:+58092687 | MS.gene67886:CDS |
| CTTAAAGCTGGAGGTGGCAT+TGG | 0.391361 | 2.4:+58094864 | MS.gene67886:CDS |
| AACCTTCTCATTAATGCATC+TGG | 0.398628 | 2.4:+58094255 | MS.gene67886:CDS |
| AGAAGCCCAGTTGATGCATT+AGG | 0.400206 | 2.4:-58093044 | None:intergenic |
| TGCAATAGAATACATATGAT+TGG | 0.426249 | 2.4:-58095358 | None:intergenic |
| TAATGCCGTCGGTCCTATCT+TGG | 0.436507 | 2.4:+58094652 | MS.gene67886:CDS |
| CAATGGCAAGTTCTTTGCTT+GGG | 0.439897 | 2.4:+58095507 | MS.gene67886:CDS |
| AATGGAGTTTCCTTAGTTCA+AGG | 0.442154 | 2.4:+58092705 | MS.gene67886:CDS |
| TTAAAGCTGGAGGTGGCATT+GGG | 0.448490 | 2.4:+58094865 | MS.gene67886:CDS |
| TTGTGGCTAGTTTGAGTGCA+AGG | 0.455555 | 2.4:+58094907 | MS.gene67886:CDS |
| TCTGGAAGCTCCTTGAACTA+AGG | 0.459833 | 2.4:-58092715 | None:intergenic |
| CTATTGGCGATAATCGTCTC+GGG | 0.464427 | 2.4:+58094937 | MS.gene67886:CDS |
| GGCAAGTTCTTTGCTTGGGA+TGG | 0.471669 | 2.4:+58095511 | MS.gene67886:CDS |
| GTTACCTTGATAACCAAGAT+AGG | 0.479512 | 2.4:-58094665 | None:intergenic |
| CGGTCCTATCTTGGTTATCA+AGG | 0.479719 | 2.4:+58094661 | MS.gene67886:CDS |
| CAAGGAGCTTCCAGAGGAAT+CGG | 0.479788 | 2.4:+58092723 | MS.gene67886:CDS |
| ACAATGGCAAGTTCTTTGCT+TGG | 0.481131 | 2.4:+58095506 | MS.gene67886:CDS |
| GACTGTTGAAAGTTCTATTG+AGG | 0.482023 | 2.4:+58093118 | MS.gene67886:CDS |
| ATGTGGCCTCTTCTTAAAGC+TGG | 0.492856 | 2.4:+58094852 | MS.gene67886:CDS |
| GAATTCAAGACCGATTCCTC+TGG | 0.498734 | 2.4:-58092733 | None:intergenic |
| CCATGGCTTCACGTTCCCCT+CGG | 0.507270 | 2.4:+58092628 | None:intergenic |
| GGGATGGTCAAGAAATTCCT+TGG | 0.508072 | 2.4:+58095527 | MS.gene67886:CDS |
| AGATCTGTGTCAACTGTACC+AGG | 0.510748 | 2.4:-58095382 | None:intergenic |
| GTTGGAGTTTGCGAGGAAGA+AGG | 0.522651 | 2.4:+58095333 | MS.gene67886:CDS |
| TTGTCAATAAAAGAGACATA+TGG | 0.523455 | 2.4:+58094225 | MS.gene67886:CDS |
| CTTCTCCAATTTGTTCAATG+TGG | 0.532375 | 2.4:-58094603 | None:intergenic |
| GGAAAGAAGTGGTGCAGTTG+TGG | 0.541874 | 2.4:+58094890 | MS.gene67886:CDS |
| CCGAGGGGAACGTGAAGCCA+TGG | 0.545507 | 2.4:-58092628 | None:intergenic |
| TCTATTGGCGATAATCGTCT+CGG | 0.545892 | 2.4:+58094936 | MS.gene67886:CDS |
| TGCCAGATGCATTAATGAGA+AGG | 0.549104 | 2.4:-58094257 | None:intergenic |
| TGTGGCTAGTTTGAGTGCAA+GGG | 0.561568 | 2.4:+58094908 | MS.gene67886:CDS |
| CCTCTTCTTAAAGCTGGAGG+TGG | 0.561667 | 2.4:+58094858 | MS.gene67886:CDS |
| TCATATGAGGTTAATGCCGT+CGG | 0.567166 | 2.4:+58094641 | MS.gene67886:CDS |
| CCACCTCCAGCTTTAAGAAG+AGG | 0.569003 | 2.4:-58094858 | None:intergenic |
| AGCTGGAGGTGGCATTGGGA+CGG | 0.573880 | 2.4:+58094869 | MS.gene67886:CDS |
| ATATGTATTCTATTGCATCC+TGG | 0.575422 | 2.4:+58095364 | MS.gene67886:CDS |
| TGGCCTCTTCTTAAAGCTGG+AGG | 0.586099 | 2.4:+58094855 | MS.gene67886:CDS |
| TGGCTAGTGATAGAAGCCGA+GGG | 0.589776 | 2.4:-58092644 | None:intergenic |
| CAAAGAACTTGCCATTGTCA+TGG | 0.596876 | 2.4:-58095501 | None:intergenic |
| CGATCTCGTTGGAGTTTGCG+AGG | 0.597005 | 2.4:+58095326 | MS.gene67886:CDS |
| CTGGCTAGTGATAGAAGCCG+AGG | 0.605793 | 2.4:-58092645 | None:intergenic |
| ATACCTGAAGTGCTGCAACC+AGG | 0.607063 | 2.4:+58094288 | MS.gene67886:CDS |
| TATTGGCGATAATCGTCTCG+GGG | 0.615665 | 2.4:+58094938 | MS.gene67886:CDS |
| AATTTCTAAATCAGCACATG+TGG | 0.616873 | 2.4:+58094835 | MS.gene67886:intron |
| AGTGTCAAAGACGATCTCGT+TGG | 0.626216 | 2.4:+58095315 | MS.gene67886:intron |
| GGCATTGGGACGGAAAGAAG+TGG | 0.627744 | 2.4:+58094879 | MS.gene67886:CDS |
| CTTTCAACAGTCAAATCCAA+AGG | 0.633353 | 2.4:-58093107 | None:intergenic |
| TTAGTTCAAGGAGCTTCCAG+AGG | 0.637415 | 2.4:+58092717 | MS.gene67886:CDS |
| AATGTCAAGAGCCATGACAA+TGG | 0.667426 | 2.4:+58095490 | MS.gene67886:CDS |
| GATAACCAAGATAGGACCGA+CGG | 0.679582 | 2.4:-58094657 | None:intergenic |
| ACAAATATGACAGATTACCA+AGG | 0.689876 | 2.4:-58095544 | None:intergenic |
| GTAATCCTAATGCATCAACT+GGG | 0.689940 | 2.4:+58093039 | MS.gene67886:CDS |
| ATTGGCGATAATCGTCTCGG+GGG | 0.707865 | 2.4:+58094939 | MS.gene67886:CDS |
| GGCTAGTGATAGAAGCCGAG+GGG | 0.717127 | 2.4:-58092643 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TGTATTTATTATAATATTTC+AGG | + | chr2.4:58094194-58094213 | MS.gene67886:intron | 10.0% |
| !!! | ATAATTTTAGAAGTAAAATT+GGG | + | chr2.4:58094738-58094757 | MS.gene67886:intron | 10.0% |
| !!! | ATCAAATGAAAAAAATATTT+TGG | - | chr2.4:58093579-58093598 | None:intergenic | 10.0% |
| !! | AAAACAACTTATAGATTATA+TGG | + | chr2.4:58095193-58095212 | MS.gene67886:intron | 15.0% |
| !! | TTTATTTGTTTATCTATTTG+TGG | + | chr2.4:58094715-58094734 | MS.gene67886:intron | 15.0% |
| !!! | AAAAAAATTACTTTTCTTCA+TGG | + | chr2.4:58092819-58092838 | MS.gene67886:intron | 15.0% |
| !!! | AAAAAATTACTTTTCTTCAT+GGG | + | chr2.4:58092820-58092839 | MS.gene67886:intron | 15.0% |
| !!! | ATGAAGAAAAGTAATTTTTT+TGG | - | chr2.4:58092820-58092839 | None:intergenic | 15.0% |
| !!! | GATAATTTTAGAAGTAAAAT+TGG | + | chr2.4:58094737-58094756 | MS.gene67886:intron | 15.0% |
| !!! | TTAGCAATATTTTTTTGAAA+TGG | - | chr2.4:58095415-58095434 | None:intergenic | 15.0% |
| !!! | TTTAGCTAATATTTAACTTT+AGG | + | chr2.4:58093320-58093339 | MS.gene67886:intron | 15.0% |
| !! | AAAAAGTAATATGTGTGTAA+TGG | + | chr2.4:58094474-58094493 | MS.gene67886:intron | 20.0% |
| !! | AAAGAAAGAAAACAATGAAT+GGG | - | chr2.4:58093157-58093176 | None:intergenic | 20.0% |
| !! | AAGCACTTATAGAATTATTT+GGG | + | chr2.4:58095101-58095120 | MS.gene67886:intron | 20.0% |
| !! | ATTCTTAGTTGTATCAAAAT+GGG | + | chr2.4:58093710-58093729 | MS.gene67886:intron | 20.0% |
| !! | CTAAAAACAGAATAATCAAA+AGG | + | chr2.4:58094392-58094411 | MS.gene67886:intron | 20.0% |
| !! | CTTATCATATTGAATATAAC+AGG | - | chr2.4:58095033-58095052 | None:intergenic | 20.0% |
| !! | TTATATCCTCAAATAATCTT+TGG | + | chr2.4:58093442-58093461 | MS.gene67886:intron | 20.0% |
| !!! | AAAAATTACTTTTCTTCATG+GGG | + | chr2.4:58092821-58092840 | MS.gene67886:intron | 20.0% |
| !!! | AAAGAAAAACATTGTTTTCA+AGG | - | chr2.4:58092774-58092793 | None:intergenic | 20.0% |
| !!! | ATGAAAAAAATATTTTGGCA+AGG | - | chr2.4:58093574-58093593 | None:intergenic | 20.0% |
| !!! | TAAAGATTTGTTTCATTCTT+TGG | + | chr2.4:58094311-58094330 | MS.gene67886:intron | 20.0% |
| !!! | TTAACAAATGAATAGGTTTT+TGG | - | chr2.4:58094168-58094187 | None:intergenic | 20.0% |
| !!! | TTGTGTTTTGTATTGTATAT+AGG | + | chr2.4:58092965-58092984 | MS.gene67886:intron | 20.0% |
| ! | ACAAAGCTTAACAAATGAAT+AGG | - | chr2.4:58094175-58094194 | None:intergenic | 25.0% |
| ! | ATACAATACAAAACACAACA+CGG | - | chr2.4:58092963-58092982 | None:intergenic | 25.0% |
| ! | ATATGATAAACTGTTTGAGA+TGG | + | chr2.4:58095254-58095273 | MS.gene67886:intron | 25.0% |
| ! | ATCTTTAATGCTTTCATATG+AGG | + | chr2.4:58094628-58094647 | MS.gene67886:CDS | 25.0% |
| ! | CATTCTTAGTTGTATCAAAA+TGG | + | chr2.4:58093709-58093728 | MS.gene67886:intron | 25.0% |
| ! | GAAAGAAAGAAAACAATGAA+TGG | - | chr2.4:58093158-58093177 | None:intergenic | 25.0% |
| ! | GAATACATGAAGAAAAACTT+GGG | - | chr2.4:58094355-58094374 | None:intergenic | 25.0% |
| ! | TGCAATAGAATACATATGAT+TGG | - | chr2.4:58095361-58095380 | None:intergenic | 25.0% |
| ! | TTCTTAGTTGTATCAAAATG+GGG | + | chr2.4:58093711-58093730 | MS.gene67886:intron | 25.0% |
| ! | TTGTCAATAAAAGAGACATA+TGG | + | chr2.4:58094225-58094244 | MS.gene67886:CDS | 25.0% |
| ! | TTTGTTTCATTCTTTGGTAA+TGG | + | chr2.4:58094317-58094336 | MS.gene67886:intron | 25.0% |
| !! | ATGTTATAAGCTATTTCCAT+AGG | - | chr2.4:58095131-58095150 | None:intergenic | 25.0% |
| !! | GAAGCACTTATAGAATTATT+TGG | + | chr2.4:58095100-58095119 | MS.gene67886:intron | 25.0% |
| !!! | CATTTTGATACAACTAAGAA+TGG | - | chr2.4:58093711-58093730 | None:intergenic | 25.0% |
| !!! | TGTTTTTTATCTTAACCTTC+CGG | - | chr2.4:58093526-58093545 | None:intergenic | 25.0% |
| !!! | TTCTAGTCTTGTAACTAAAA+GGG | - | chr2.4:58093234-58093253 | None:intergenic | 25.0% |
| !!! | TTTTCTCTGTTTTTTAGTCT+AGG | + | chr2.4:58092852-58092871 | MS.gene67886:intron | 25.0% |
| AACTAAAAACTCAATACCAC+CGG | - | chr2.4:58092939-58092958 | None:intergenic | 30.0% | |
| AAGTAATATGTGTGTAATGG+AGG | + | chr2.4:58094477-58094496 | MS.gene67886:intron | 30.0% | |
| AATACCAGTCTTGATAGAAA+AGG | - | chr2.4:58094051-58094070 | None:intergenic | 30.0% | |
| AATTTAACGTGATCAGCTAT+AGG | + | chr2.4:58094098-58094117 | MS.gene67886:intron | 30.0% | |
| AATTTCTAAATCAGCACATG+TGG | + | chr2.4:58094835-58094854 | MS.gene67886:intron | 30.0% | |
| ACATTTCAACAATGCTACAT+TGG | + | chr2.4:58093618-58093637 | MS.gene67886:intron | 30.0% | |
| AGAAACCACATTGAACAAAT+TGG | + | chr2.4:58094598-58094617 | MS.gene67886:intron | 30.0% | |
| ATATGTATTCTATTGCATCC+TGG | + | chr2.4:58095364-58095383 | MS.gene67886:CDS | 30.0% | |
| ATGAAGAAAAACTTGGGAAA+TGG | - | chr2.4:58094349-58094368 | None:intergenic | 30.0% | |
| ATTGAGTCTAACAACATAGA+AGG | - | chr2.4:58093380-58093399 | None:intergenic | 30.0% | |
| CAATATGATAAGTGCATCAT+TGG | + | chr2.4:58095041-58095060 | MS.gene67886:intron | 30.0% | |
| CATTAATGAGAAGGTTTAGA+TGG | - | chr2.4:58094251-58094270 | None:intergenic | 30.0% | |
| CTATAGCGAATTTGAACAAA+TGG | - | chr2.4:58093936-58093955 | None:intergenic | 30.0% | |
| CTTATCAGCGTAGTAAATAA+TGG | - | chr2.4:58093787-58093806 | None:intergenic | 30.0% | |
| GAATGAAACAAATCTTTACC+TGG | - | chr2.4:58094309-58094328 | None:intergenic | 30.0% | |
| GGAAGGATTAACAAATATAG+CGG | + | chr2.4:58094025-58094044 | MS.gene67886:intron | 30.0% | |
| GGAATACATGAAGAAAAACT+TGG | - | chr2.4:58094356-58094375 | None:intergenic | 30.0% | |
| GGTAGATGCTAAAGTTAATA+TGG | + | chr2.4:58093254-58093273 | MS.gene67886:intron | 30.0% | |
| GTGATTTCAATTGTATATCG+CGG | + | chr2.4:58093806-58093825 | MS.gene67886:intron | 30.0% | |
| GTTCAAATTCTACTATGCTA+TGG | + | chr2.4:58093842-58093861 | MS.gene67886:intron | 30.0% | |
| TAGATATGAGATTTGTGACA+AGG | + | chr2.4:58093284-58093303 | MS.gene67886:intron | 30.0% | |
| TCTATGTTGTTAGACTCAAT+TGG | + | chr2.4:58093380-58093399 | MS.gene67886:intron | 30.0% | |
| TCTTAGTTGTATCAAAATGG+GGG | + | chr2.4:58093712-58093731 | MS.gene67886:intron | 30.0% | |
| TGACACTGTTTGAATATAAG+CGG | - | chr2.4:58095302-58095321 | None:intergenic | 30.0% | |
| TTTCTATCAAGACTGGTATT+AGG | + | chr2.4:58094051-58094070 | MS.gene67886:intron | 30.0% | |
| ! | TAATGATGTGCAACAACTTT+TGG | - | chr2.4:58095468-58095487 | None:intergenic | 30.0% |
| ! | TGCAATATCTTTTATGCTCA+AGG | - | chr2.4:58093756-58093775 | None:intergenic | 30.0% |
| !! | CTTCTAGTCTTGTAACTAAA+AGG | - | chr2.4:58093235-58093254 | None:intergenic | 30.0% |
| !! | CTTTTAGTTACAAGACTAGA+AGG | + | chr2.4:58093233-58093252 | MS.gene67886:intron | 30.0% |
| !!! | TTTTTTGGCAATGTAGTGAA+TGG | - | chr2.4:58092805-58092824 | None:intergenic | 30.0% |
| AACCTTCTCATTAATGCATC+TGG | + | chr2.4:58094255-58094274 | MS.gene67886:CDS | 35.0% | |
| AATGCTACATTGGATAAGTG+AGG | + | chr2.4:58093628-58093647 | MS.gene67886:intron | 35.0% | |
| AATGGAGTTTCCTTAGTTCA+AGG | + | chr2.4:58092705-58092724 | MS.gene67886:CDS | 35.0% | |
| ATCAGCGTAGTAAATAATGG+TGG | - | chr2.4:58093784-58093803 | None:intergenic | 35.0% | |
| ATGAGGTTATAGAAGCCTTA+GGG | + | chr2.4:58094774-58094793 | MS.gene67886:intron | 35.0% | |
| CTTTCAACAGTCAAATCCAA+AGG | - | chr2.4:58093110-58093129 | None:intergenic | 35.0% | |
| GAATTATTTGGGAGAACCTA+TGG | + | chr2.4:58095112-58095131 | MS.gene67886:intron | 35.0% | |
| GACTGTTGAAAGTTCTATTG+AGG | + | chr2.4:58093118-58093137 | MS.gene67886:CDS | 35.0% | |
| GATACAACTAAGAATGGCAA+TGG | - | chr2.4:58093705-58093724 | None:intergenic | 35.0% | |
| GTAATCCTAATGCATCAACT+GGG | + | chr2.4:58093039-58093058 | MS.gene67886:CDS | 35.0% | |
| GTCTGACCAAAGATTATTTG+AGG | - | chr2.4:58093451-58093470 | None:intergenic | 35.0% | |
| TATGAGGTTATAGAAGCCTT+AGG | + | chr2.4:58094773-58094792 | MS.gene67886:intron | 35.0% | |
| TCATCATCTTCTCAAGCTAA+TGG | + | chr2.4:58092687-58092706 | MS.gene67886:CDS | 35.0% | |
| TGGGTTTCTTTATGTGTATG+AGG | + | chr2.4:58094757-58094776 | MS.gene67886:intron | 35.0% | |
| ! | CAGTTGATGCATTAGGATTA+CGG | - | chr2.4:58093040-58093059 | None:intergenic | 35.0% |
| ! | CTCTTTTATTGACAATGCAG+AGG | - | chr2.4:58094220-58094239 | None:intergenic | 35.0% |
| ! | CTTCTCCAATTTGTTCAATG+TGG | - | chr2.4:58094606-58094625 | None:intergenic | 35.0% |
| ! | GTTACCTTGATAACCAAGAT+AGG | - | chr2.4:58094668-58094687 | None:intergenic | 35.0% |
| ! | TCGACTTCAAATTTTGCCTT+TGG | + | chr2.4:58093091-58093110 | MS.gene67886:CDS | 35.0% |
| ! | TTAGACACCAAGTTGAGATT+TGG | + | chr2.4:58093205-58093224 | MS.gene67886:intron | 35.0% |
| !! | ACAAGTGGGTTAACTTAATC+AGG | - | chr2.4:58093980-58093999 | None:intergenic | 35.0% |
| !! | ATCAGCTATAGGCTTTGTTT+AGG | + | chr2.4:58094109-58094128 | MS.gene67886:intron | 35.0% |
| !! | CAAGTGGGTTAACTTAATCA+GGG | - | chr2.4:58093979-58093998 | None:intergenic | 35.0% |
| AACTGGGCTTCTTCATTTGA+AGG | + | chr2.4:58093055-58093074 | MS.gene67886:CDS | 40.0% | |
| AATGTCAAGAGCCATGACAA+TGG | + | chr2.4:58095490-58095509 | MS.gene67886:CDS | 40.0% | |
| ACAATGGCAAGTTCTTTGCT+TGG | + | chr2.4:58095506-58095525 | MS.gene67886:CDS | 40.0% | |
| ATATGTCAGCTACTAGTTGG+AGG | - | chr2.4:58093662-58093681 | None:intergenic | 40.0% | |
| CAAAGAACTTGCCATTGTCA+TGG | - | chr2.4:58095504-58095523 | None:intergenic | 40.0% | |
| CAATGGCAAGTTCTTTGCTT+GGG | + | chr2.4:58095507-58095526 | MS.gene67886:CDS | 40.0% | |
| CCACTTGTCAGTTTCGAAAT+GGG | + | chr2.4:58093992-58094011 | MS.gene67886:intron | 40.0% | |
| CCATTTCGAAACTGACAAGT+GGG | - | chr2.4:58093994-58094013 | None:intergenic | 40.0% | |
| CGTAATCCTAATGCATCAAC+TGG | + | chr2.4:58093038-58093057 | MS.gene67886:CDS | 40.0% | |
| GAATGGCAATGGTTATAGTG+TGG | - | chr2.4:58093694-58093713 | None:intergenic | 40.0% | |
| GACATTGGACACAATTGTTG+CGG | + | chr2.4:58092900-58092919 | MS.gene67886:intron | 40.0% | |
| TCATATGAGGTTAATGCCGT+CGG | + | chr2.4:58094641-58094660 | MS.gene67886:CDS | 40.0% | |
| TCCAACTAGTAGCTGACATA+TGG | + | chr2.4:58093661-58093680 | MS.gene67886:intron | 40.0% | |
| TCCATATGTCAGCTACTAGT+TGG | - | chr2.4:58093665-58093684 | None:intergenic | 40.0% | |
| TCTATTGGCGATAATCGTCT+CGG | + | chr2.4:58094936-58094955 | MS.gene67886:CDS | 40.0% | |
| TGAAGAAGAGAATGCTCTTC+TGG | - | chr2.4:58092667-58092686 | None:intergenic | 40.0% | |
| TGCCAGATGCATTAATGAGA+AGG | - | chr2.4:58094260-58094279 | None:intergenic | 40.0% | |
| TTGTACCAAATAGCACATCG+CGG | + | chr2.4:58093902-58093921 | MS.gene67886:intron | 40.0% | |
| ! | CAGTAATCTGGAATTCGTCT+GGG | - | chr2.4:58093485-58093504 | None:intergenic | 40.0% |
| ! | CTTTTGGACTGAGTACTCTT+TGG | - | chr2.4:58095452-58095471 | None:intergenic | 40.0% |
| AAATGGGAACGTGTCTAGGA+AGG | + | chr2.4:58094008-58094027 | MS.gene67886:intron | 45.0% | |
| ACAGACATAGACACGGACAT+TGG | + | chr2.4:58092885-58092904 | MS.gene67886:intron | 45.0% | |
| AGATCTGTGTCAACTGTACC+AGG | - | chr2.4:58095385-58095404 | None:intergenic | 45.0% | |
| AGGGTCACCAAATCTCAACT+TGG | - | chr2.4:58093215-58093234 | None:intergenic | 45.0% | |
| AGTGCAAGGGTTGCATCTAT+TGG | + | chr2.4:58094921-58094940 | MS.gene67886:CDS | 45.0% | |
| AGTGTCAAAGACGATCTCGT+TGG | + | chr2.4:58095315-58095334 | MS.gene67886:intron | 45.0% | |
| ATGTGGCCTCTTCTTAAAGC+TGG | + | chr2.4:58094852-58094871 | MS.gene67886:CDS | 45.0% | |
| CACTGACACAGACATAGACA+CGG | + | chr2.4:58092878-58092897 | MS.gene67886:intron | 45.0% | |
| CCCACTTGTCAGTTTCGAAA+TGG | + | chr2.4:58093991-58094010 | MS.gene67886:intron | 45.0% | |
| CCCATTTCGAAACTGACAAG+TGG | - | chr2.4:58093995-58094014 | None:intergenic | 45.0% | |
| CGGTCCTATCTTGGTTATCA+AGG | + | chr2.4:58094661-58094680 | MS.gene67886:CDS | 45.0% | |
| CTATTGGCGATAATCGTCTC+GGG | + | chr2.4:58094937-58094956 | MS.gene67886:CDS | 45.0% | |
| GACTCAAACTACATGCCCTA+AGG | - | chr2.4:58094792-58094811 | None:intergenic | 45.0% | |
| GATAACCAAGATAGGACCGA+CGG | - | chr2.4:58094660-58094679 | None:intergenic | 45.0% | |
| GCAGCAGATTTGTGAGAACA+CGG | + | chr2.4:58094450-58094469 | MS.gene67886:intron | 45.0% | |
| GGGATGGTCAAGAAATTCCT+TGG | + | chr2.4:58095527-58095546 | MS.gene67886:CDS | 45.0% | |
| TATTGGCGATAATCGTCTCG+GGG | + | chr2.4:58094938-58094957 | MS.gene67886:CDS | 45.0% | |
| TCTGGAAGCTCCTTGAACTA+AGG | - | chr2.4:58092718-58092737 | None:intergenic | 45.0% | |
| TTAAAGCTGGAGGTGGCATT+GGG | + | chr2.4:58094865-58094884 | MS.gene67886:CDS | 45.0% | |
| TTAGTTCAAGGAGCTTCCAG+AGG | + | chr2.4:58092717-58092736 | MS.gene67886:CDS | 45.0% | |
| TTCGAAATGGGAACGTGTCT+AGG | + | chr2.4:58094004-58094023 | MS.gene67886:intron | 45.0% | |
| ! | AGAAGCCCAGTTGATGCATT+AGG | - | chr2.4:58093047-58093066 | None:intergenic | 45.0% |
| ! | GAATTCAAGACCGATTCCTC+TGG | - | chr2.4:58092736-58092755 | None:intergenic | 45.0% |
| ! | GCAGTAATCTGGAATTCGTC+TGG | - | chr2.4:58093486-58093505 | None:intergenic | 45.0% |
| ! | TTGTTCCGCGATGTGCTATT+TGG | - | chr2.4:58093910-58093929 | None:intergenic | 45.0% |
| !! | TGTGGCTAGTTTGAGTGCAA+GGG | + | chr2.4:58094908-58094927 | MS.gene67886:CDS | 45.0% |
| !! | TTGTGGCTAGTTTGAGTGCA+AGG | + | chr2.4:58094907-58094926 | MS.gene67886:CDS | 45.0% |
| !!! | CTGTTTTTAGTGCGTGCAAG+CGG | - | chr2.4:58094382-58094401 | None:intergenic | 45.0% |
| !!! | TGTTTTTAGTGCGTGCAAGC+GGG | - | chr2.4:58094381-58094400 | None:intergenic | 45.0% |
| ATCTTAACCTTCCGGCACCA+AGG | - | chr2.4:58093518-58093537 | None:intergenic | 50.0% | |
| ATTACTGCTGCCCTCTTCCT+TGG | + | chr2.4:58093498-58093517 | MS.gene67886:intron | 50.0% | |
| ATTGGCGATAATCGTCTCGG+GGG | + | chr2.4:58094939-58094958 | MS.gene67886:CDS | 50.0% | |
| CAAGGAGCTTCCAGAGGAAT+CGG | + | chr2.4:58092723-58092742 | MS.gene67886:CDS | 50.0% | |
| CCTCTTCTTAAAGCTGGAGG+TGG | + | chr2.4:58094858-58094877 | MS.gene67886:CDS | 50.0% | |
| CTTAAAGCTGGAGGTGGCAT+TGG | + | chr2.4:58094864-58094883 | MS.gene67886:CDS | 50.0% | |
| GACACAATTGTTGCGGACAC+CGG | + | chr2.4:58092907-58092926 | MS.gene67886:intron | 50.0% | |
| GGAAAGAAGTGGTGCAGTTG+TGG | + | chr2.4:58094890-58094909 | MS.gene67886:CDS | 50.0% | |
| GGCAAGTTCTTTGCTTGGGA+TGG | + | chr2.4:58095511-58095530 | MS.gene67886:CDS | 50.0% | |
| GTTGGAGTTTGCGAGGAAGA+AGG | + | chr2.4:58095333-58095352 | MS.gene67886:CDS | 50.0% | |
| TAATGCCGTCGGTCCTATCT+TGG | + | chr2.4:58094652-58094671 | MS.gene67886:CDS | 50.0% | |
| TGGCCTCTTCTTAAAGCTGG+AGG | + | chr2.4:58094855-58094874 | MS.gene67886:CDS | 50.0% | |
| TGGCTAGTGATAGAAGCCGA+GGG | - | chr2.4:58092647-58092666 | None:intergenic | 50.0% | |
| TTACCTGGTTGCAGCACTTC+AGG | - | chr2.4:58094294-58094313 | None:intergenic | 50.0% | |
| ! | GCGGCCTTTTCTATCAAGAC+TGG | + | chr2.4:58094044-58094063 | MS.gene67886:intron | 50.0% |
| ! | TCGGGGGTTGGCATTCATAT+CGG | + | chr2.4:58094955-58094974 | MS.gene67886:CDS | 50.0% |
| !! | ATACCTGAAGTGCTGCAACC+AGG | + | chr2.4:58094288-58094307 | MS.gene67886:CDS | 50.0% |
| !! | CCACCTCCAGCTTTAAGAAG+AGG | - | chr2.4:58094861-58094880 | None:intergenic | 50.0% |
| !!! | GTTTTTAGTGCGTGCAAGCG+GGG | - | chr2.4:58094380-58094399 | None:intergenic | 50.0% |
| CGATCTCGTTGGAGTTTGCG+AGG | + | chr2.4:58095326-58095345 | MS.gene67886:CDS | 55.0% | |
| CTGGCTAGTGATAGAAGCCG+AGG | - | chr2.4:58092648-58092667 | None:intergenic | 55.0% | |
| GGAAGAGGGCAGCAGTAATC+TGG | - | chr2.4:58093497-58093516 | None:intergenic | 55.0% | |
| GGCTAGTGATAGAAGCCGAG+GGG | - | chr2.4:58092646-58092665 | None:intergenic | 55.0% | |
| ! | GGCATTGGGACGGAAAGAAG+TGG | + | chr2.4:58094879-58094898 | MS.gene67886:CDS | 55.0% |
| ACCTTCCGGCACCAAGGAAG+AGG | - | chr2.4:58093512-58093531 | None:intergenic | 60.0% | |
| CCTTCCGGCACCAAGGAAGA+GGG | - | chr2.4:58093511-58093530 | None:intergenic | 60.0% | |
| GCGATAATCGTCTCGGGGGT+TGG | + | chr2.4:58094943-58094962 | MS.gene67886:CDS | 60.0% | |
| TCAATACCACCGGCACGTGC+CGG | - | chr2.4:58092929-58092948 | None:intergenic | 60.0% | |
| TTTAGTGCGTGCAAGCGGGG+TGG | - | chr2.4:58094377-58094396 | None:intergenic | 60.0% | |
| ! | AGCTGGAGGTGGCATTGGGA+CGG | + | chr2.4:58094869-58094888 | MS.gene67886:CDS | 60.0% |
| ! | GCTGCCCTCTTCCTTGGTGC+CGG | + | chr2.4:58093504-58093523 | MS.gene67886:intron | 65.0% |
| !! | CCCTCTTCCTTGGTGCCGGA+AGG | + | chr2.4:58093508-58093527 | MS.gene67886:intron | 65.0% |
| TTGCGGACACCGGCACGTGC+CGG | + | chr2.4:58092917-58092936 | MS.gene67886:intron | 70.0% | |
| ! | CGGACACCGGCACGTGCCGG+TGG | + | chr2.4:58092920-58092939 | MS.gene67886:intron | 80.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr2.4 | gene | 58092630 | 58095552 | 58092630 | ID=MS.gene67886 |
| chr2.4 | mRNA | 58092630 | 58095552 | 58092630 | ID=MS.gene67886.t1;Parent=MS.gene67886 |
| chr2.4 | exon | 58092630 | 58092755 | 58092630 | ID=MS.gene67886.t1.exon1;Parent=MS.gene67886.t1 |
| chr2.4 | CDS | 58092630 | 58092755 | 58092630 | ID=cds.MS.gene67886.t1;Parent=MS.gene67886.t1 |
| chr2.4 | exon | 58092987 | 58093139 | 58092987 | ID=MS.gene67886.t1.exon2;Parent=MS.gene67886.t1 |
| chr2.4 | CDS | 58092987 | 58093139 | 58092987 | ID=cds.MS.gene67886.t1;Parent=MS.gene67886.t1 |
| chr2.4 | exon | 58094216 | 58094309 | 58094216 | ID=MS.gene67886.t1.exon3;Parent=MS.gene67886.t1 |
| chr2.4 | CDS | 58094216 | 58094309 | 58094216 | ID=cds.MS.gene67886.t1;Parent=MS.gene67886.t1 |
| chr2.4 | exon | 58094600 | 58094682 | 58094600 | ID=MS.gene67886.t1.exon4;Parent=MS.gene67886.t1 |
| chr2.4 | CDS | 58094600 | 58094682 | 58094600 | ID=cds.MS.gene67886.t1;Parent=MS.gene67886.t1 |
| chr2.4 | exon | 58094849 | 58095002 | 58094849 | ID=MS.gene67886.t1.exon5;Parent=MS.gene67886.t1 |
| chr2.4 | CDS | 58094849 | 58095002 | 58094849 | ID=cds.MS.gene67886.t1;Parent=MS.gene67886.t1 |
| chr2.4 | exon | 58095317 | 58095552 | 58095317 | ID=MS.gene67886.t1.exon6;Parent=MS.gene67886.t1 |
| chr2.4 | CDS | 58095317 | 58095552 | 58095317 | ID=cds.MS.gene67886.t1;Parent=MS.gene67886.t1 |
| Gene Sequence |
| Protein sequence |
