Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene55898.t1 | XP_013463075.2 | 95.7 | 300 | 10 | 2 | 1 | 298 | 1 | 299 | 9.10E-155 | 556.2 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene55898.t1 | Q9P7I6 | 30.1 | 272 | 158 | 9 | 40 | 298 | 2 | 254 | 2.5e-20 | 100.9 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene55898.t1 | A0A396J962 | 95.7 | 300 | 10 | 2 | 1 | 298 | 1 | 299 | 6.6e-155 | 556.2 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049217 | MS.gene55898 | 0.809217 | 2.11E-50 | -1.69E-46 |
| MS.gene049222 | MS.gene55898 | 0.814359 | 1.60E-51 | -1.69E-46 |
| MS.gene049427 | MS.gene55898 | 0.802773 | 4.78E-49 | -1.69E-46 |
| MS.gene049633 | MS.gene55898 | 0.830284 | 3.20E-55 | -1.69E-46 |
| MS.gene050593 | MS.gene55898 | 0.806501 | 7.98E-50 | -1.69E-46 |
| MS.gene050772 | MS.gene55898 | 0.808368 | 3.21E-50 | -1.69E-46 |
| MS.gene05080 | MS.gene55898 | 0.8149 | 1.22E-51 | -1.69E-46 |
| MS.gene050950 | MS.gene55898 | 0.81442 | 1.55E-51 | -1.69E-46 |
| MS.gene051228 | MS.gene55898 | 0.821279 | 4.39E-53 | -1.69E-46 |
| MS.gene051617 | MS.gene55898 | 0.812311 | 4.52E-51 | -1.69E-46 |
| MS.gene051734 | MS.gene55898 | 0.807617 | 4.63E-50 | -1.69E-46 |
| MS.gene051810 | MS.gene55898 | 0.813841 | 2.09E-51 | -1.69E-46 |
| MS.gene051858 | MS.gene55898 | 0.806081 | 9.78E-50 | -1.69E-46 |
| MS.gene052379 | MS.gene55898 | 0.815847 | 7.49E-52 | -1.69E-46 |
| MS.gene052870 | MS.gene55898 | 0.843371 | 1.46E-58 | -1.69E-46 |
| MS.gene052872 | MS.gene55898 | 0.840222 | 9.90E-58 | -1.69E-46 |
| MS.gene053574 | MS.gene55898 | 0.806326 | 8.69E-50 | -1.69E-46 |
| MS.gene054642 | MS.gene55898 | 0.810397 | 1.18E-50 | -1.69E-46 |
| MS.gene055206 | MS.gene55898 | 0.819241 | 1.29E-52 | -1.69E-46 |
| MS.gene055722 | MS.gene55898 | 0.804566 | 2.03E-49 | -1.69E-46 |
| MS.gene056897 | MS.gene55898 | 0.811927 | 5.48E-51 | -1.69E-46 |
| MS.gene057076 | MS.gene55898 | 0.817262 | 3.61E-52 | -1.69E-46 |
| MS.gene057331 | MS.gene55898 | 0.807425 | 5.09E-50 | -1.69E-46 |
| MS.gene059023 | MS.gene55898 | 0.801506 | 8.72E-49 | -1.69E-46 |
| MS.gene059029 | MS.gene55898 | 0.818345 | 2.06E-52 | -1.69E-46 |
| MS.gene05913 | MS.gene55898 | 0.802036 | 6.79E-49 | -1.69E-46 |
| MS.gene059181 | MS.gene55898 | 0.803082 | 4.13E-49 | -1.69E-46 |
| MS.gene05934 | MS.gene55898 | 0.811328 | 7.40E-51 | -1.69E-46 |
| MS.gene059536 | MS.gene55898 | 0.801515 | 8.68E-49 | -1.69E-46 |
| MS.gene059718 | MS.gene55898 | 0.80134 | 9.43E-49 | -1.69E-46 |
| MS.gene059902 | MS.gene55898 | 0.801483 | 8.82E-49 | -1.69E-46 |
| MS.gene060762 | MS.gene55898 | 0.822509 | 2.28E-53 | -1.69E-46 |
| MS.gene060804 | MS.gene55898 | 0.803722 | 3.04E-49 | -1.69E-46 |
| MS.gene060818 | MS.gene55898 | 0.839383 | 1.64E-57 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene035406 | MS.gene55898 | PPI |
| MS.gene068987 | MS.gene55898 | PPI |
| MS.gene38834 | MS.gene55898 | PPI |
| MS.gene035401 | MS.gene55898 | PPI |
| MS.gene55898 | MS.gene36124 | PPI |
| MS.gene035412 | MS.gene55898 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene55898.t1 | MTR_2g031990 | 96.441 | 281 | 9 | 1 | 18 | 298 | 1 | 280 | 0.0 | 547 |
| MS.gene55898.t1 | MTR_4g097510 | 27.358 | 212 | 123 | 10 | 45 | 252 | 6 | 190 | 8.13e-11 | 62.0 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene55898.t1 | AT4G20760 | 75.686 | 255 | 62 | 0 | 44 | 298 | 44 | 298 | 3.89e-145 | 410 |
| MS.gene55898.t1 | AT4G20760 | 75.686 | 255 | 62 | 0 | 44 | 298 | 64 | 318 | 1.75e-144 | 409 |
Find 71 sgRNAs with CRISPR-Local
Find 186 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TAATGATGTGCAACAACTTT+TGG | 0.278163 | 2.3:-58113635 | None:intergenic |
| AGAAACCACATTGAACAAAT+TGG | 0.288395 | 2.3:+58112768 | MS.gene55898:intron |
| TTACCTGGTTGCAGCACTTC+AGG | 0.309608 | 2.3:-58112461 | None:intergenic |
| ATCTTTAATGCTTTCTTATG+AGG | 0.347301 | 2.3:+58112798 | MS.gene55898:CDS |
| TGAAGAAGAGAATGCTCTTC+TGG | 0.356280 | 2.3:-58110847 | None:intergenic |
| CAGTTGATGCATTAGGATTA+CGG | 0.378721 | 2.3:-58111206 | None:intergenic |
| AGTGCAAGGGTTGCATCTAT+TGG | 0.379178 | 2.3:+58113091 | MS.gene55898:CDS |
| CATTAATGAGAAGGTTTAGA+TGG | 0.381244 | 2.3:-58112418 | None:intergenic |
| CGTAATCCTAATGCATCAAC+TGG | 0.384959 | 2.3:+58111207 | MS.gene55898:CDS |
| AACTGGGCTTCTTCATTTGA+AGG | 0.387513 | 2.3:+58111224 | MS.gene55898:CDS |
| CTTAAAGCTGGAGGTGGCAT+TGG | 0.391361 | 2.3:+58113034 | MS.gene55898:CDS |
| AACCTTCTCATTAATGCATC+TGG | 0.398628 | 2.3:+58112425 | MS.gene55898:CDS |
| AGAAGCCCAGTTGATGCATT+AGG | 0.400206 | 2.3:-58111213 | None:intergenic |
| TCATCATCTTCTCAAGCTAA+TGG | 0.425069 | 2.3:+58110870 | MS.gene55898:CDS |
| TGCAATAGAATACATATGAT+TGG | 0.426249 | 2.3:-58113528 | None:intergenic |
| TAATGCCGTCGGTCCTATCT+TGG | 0.436507 | 2.3:+58112822 | MS.gene55898:CDS |
| CAATGGCAAGTTCTTTGCTT+GGG | 0.439897 | 2.3:+58113677 | MS.gene55898:CDS |
| AATGGTGTTTCCTTAGTTCA+AGG | 0.447999 | 2.3:+58110888 | MS.gene55898:CDS |
| TTAAAGCTGGAGGTGGCATT+GGG | 0.448490 | 2.3:+58113035 | MS.gene55898:CDS |
| TTGTGGCTAGTTTGAGTGCA+AGG | 0.455555 | 2.3:+58113077 | MS.gene55898:CDS |
| TCTGGAAGCTCCTTGAACTA+AGG | 0.459833 | 2.3:-58110898 | None:intergenic |
| CTATTGGCGATAATCGTCTC+GGG | 0.464427 | 2.3:+58113107 | MS.gene55898:CDS |
| GGCAAGTTCTTTGCTTGGGA+TGG | 0.471669 | 2.3:+58113681 | MS.gene55898:CDS |
| GTTACCTTGATAACCAAGAT+AGG | 0.479512 | 2.3:-58112835 | None:intergenic |
| CGGTCCTATCTTGGTTATCA+AGG | 0.479719 | 2.3:+58112831 | MS.gene55898:CDS |
| CAAGGAGCTTCCAGAGGAAT+CGG | 0.479788 | 2.3:+58110906 | MS.gene55898:CDS |
| ACAATGGCAAGTTCTTTGCT+TGG | 0.481131 | 2.3:+58113676 | MS.gene55898:CDS |
| GACTGTTGAAAGTTCTATTG+AGG | 0.482023 | 2.3:+58111287 | MS.gene55898:CDS |
| ATGTGGCCTCTTCTTAAAGC+TGG | 0.492856 | 2.3:+58113022 | MS.gene55898:CDS |
| GAATTCAAGACCGATTCCTC+TGG | 0.498734 | 2.3:-58110916 | None:intergenic |
| CCATGGCTTCACGTTCCCCT+CGG | 0.507270 | 2.3:+58110811 | MS.gene55898:CDS |
| GGGATGGTCAAGAAATTCCT+TGG | 0.508072 | 2.3:+58113697 | MS.gene55898:CDS |
| AGATCTGTGTCAACTGTACC+AGG | 0.510748 | 2.3:-58113552 | None:intergenic |
| GTTGGAGTTTGCGAGGAAGA+AGG | 0.522651 | 2.3:+58113503 | MS.gene55898:CDS |
| TTGTCAATAAAAGAGACATA+TGG | 0.523455 | 2.3:+58112395 | MS.gene55898:CDS |
| CTTCTCCAATTTGTTCAATG+TGG | 0.532375 | 2.3:-58112773 | None:intergenic |
| GCCATGGAAGTGTTAAGAGT+GGG | 0.537228 | 2.3:-58110795 | None:intergenic |
| GGAAAGAAGTGGTGCAGTTG+TGG | 0.541874 | 2.3:+58113060 | MS.gene55898:CDS |
| CCCCACTCTTAACACTTCCA+TGG | 0.544148 | 2.3:+58110794 | MS.gene55898:CDS |
| CCGAGGGGAACGTGAAGCCA+TGG | 0.545507 | 2.3:-58110811 | None:intergenic |
| TCTATTGGCGATAATCGTCT+CGG | 0.545892 | 2.3:+58113106 | MS.gene55898:CDS |
| TGCCAGATGCATTAATGAGA+AGG | 0.549104 | 2.3:-58112427 | None:intergenic |
| TGTGGCTAGTTTGAGTGCAA+GGG | 0.561568 | 2.3:+58113078 | MS.gene55898:CDS |
| CCTCTTCTTAAAGCTGGAGG+TGG | 0.561667 | 2.3:+58113028 | MS.gene55898:CDS |
| TCTTATGAGGTTAATGCCGT+CGG | 0.566525 | 2.3:+58112811 | MS.gene55898:CDS |
| CCACCTCCAGCTTTAAGAAG+AGG | 0.569003 | 2.3:-58113028 | None:intergenic |
| AGCTGGAGGTGGCATTGGGA+CGG | 0.573880 | 2.3:+58113039 | MS.gene55898:CDS |
| ATATGTATTCTATTGCATCC+TGG | 0.575422 | 2.3:+58113534 | MS.gene55898:CDS |
| TGGCCTCTTCTTAAAGCTGG+AGG | 0.586099 | 2.3:+58113025 | MS.gene55898:CDS |
| TGGCTACTGATAGAAGCCGA+GGG | 0.589366 | 2.3:-58110827 | None:intergenic |
| CTGGCTACTGATAGAAGCCG+AGG | 0.596454 | 2.3:-58110828 | None:intergenic |
| CAAAGAACTTGCCATTGTCA+TGG | 0.596876 | 2.3:-58113671 | None:intergenic |
| CGATCTCGTTGGAGTTTGCG+AGG | 0.597005 | 2.3:+58113496 | MS.gene55898:CDS |
| ATACCTGAAGTGCTGCAACC+AGG | 0.607063 | 2.3:+58112458 | MS.gene55898:CDS |
| TATTGGCGATAATCGTCTCG+GGG | 0.615665 | 2.3:+58113108 | MS.gene55898:CDS |
| AATTTCTAAATCAGCACATG+TGG | 0.616873 | 2.3:+58113005 | MS.gene55898:intron |
| AGTGTCAAAGACGATCTCGT+TGG | 0.626216 | 2.3:+58113485 | MS.gene55898:intron |
| GGCATTGGGACGGAAAGAAG+TGG | 0.627744 | 2.3:+58113049 | MS.gene55898:CDS |
| CTTTCAACAGTCAAATCCAA+AGG | 0.633353 | 2.3:-58111276 | None:intergenic |
| CATGGAAGTGTTAAGAGTGG+GGG | 0.635596 | 2.3:-58110793 | None:intergenic |
| TTAGTTCAAGGAGCTTCCAG+AGG | 0.637415 | 2.3:+58110900 | MS.gene55898:CDS |
| ATGGAAGTGTTAAGAGTGGG+GGG | 0.648435 | 2.3:-58110792 | None:intergenic |
| CCATGGAAGTGTTAAGAGTG+GGG | 0.656286 | 2.3:-58110794 | None:intergenic |
| AGCCATGGAAGTGTTAAGAG+TGG | 0.666238 | 2.3:-58110796 | None:intergenic |
| AATGTCAAGAGCCATGACAA+TGG | 0.667426 | 2.3:+58113660 | MS.gene55898:CDS |
| GATAACCAAGATAGGACCGA+CGG | 0.679582 | 2.3:-58112827 | None:intergenic |
| ACAAATATGACAGATTACCA+AGG | 0.689876 | 2.3:-58113714 | None:intergenic |
| GTAATCCTAATGCATCAACT+GGG | 0.689940 | 2.3:+58111208 | MS.gene55898:CDS |
| ATTGGCGATAATCGTCTCGG+GGG | 0.707865 | 2.3:+58113109 | MS.gene55898:CDS |
| GGCTACTGATAGAAGCCGAG+GGG | 0.732723 | 2.3:-58110826 | None:intergenic |
| TGGAAGTGTTAAGAGTGGGG+GGG | 0.744712 | 2.3:-58110791 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TGTATTTATTATAATATTTC+AGG | + | chr2.3:58112364-58112383 | MS.gene55898:intron | 10.0% |
| !!! | ATAATTTTAGAAGTAAAATT+GGG | + | chr2.3:58112908-58112927 | MS.gene55898:intron | 10.0% |
| !!! | ATCAAATGAAAAAAATATTT+TGG | - | chr2.3:58111749-58111768 | None:intergenic | 10.0% |
| !! | AAAACAACTTATAGATTATA+TGG | + | chr2.3:58113363-58113382 | MS.gene55898:intron | 15.0% |
| !! | TTTATTTGTTTATCTATTTG+TGG | + | chr2.3:58112885-58112904 | MS.gene55898:intron | 15.0% |
| !!! | AAAAAAATTACTTTTCTTCA+TGG | + | chr2.3:58111002-58111021 | MS.gene55898:intron | 15.0% |
| !!! | AAAAAATTACTTTTCTTCAT+GGG | + | chr2.3:58111003-58111022 | MS.gene55898:intron | 15.0% |
| !!! | AAAGAAAAACATTGTTTTTA+AGG | - | chr2.3:58110957-58110976 | None:intergenic | 15.0% |
| !!! | ATGAAGAAAAGTAATTTTTT+TGG | - | chr2.3:58111003-58111022 | None:intergenic | 15.0% |
| !!! | GATAATTTTAGAAGTAAAAT+TGG | + | chr2.3:58112907-58112926 | MS.gene55898:intron | 15.0% |
| !!! | TTAGCAATATTTTTTTGAAA+TGG | - | chr2.3:58113585-58113604 | None:intergenic | 15.0% |
| !!! | TTTAGCTAATATTTAACTTT+AGG | + | chr2.3:58111490-58111509 | MS.gene55898:intron | 15.0% |
| !! | AAAGAAAGAAAAACAATGAA+TGG | - | chr2.3:58111327-58111346 | None:intergenic | 20.0% |
| !! | AAGAAAGAAAAACAATGAAT+GGG | - | chr2.3:58111326-58111345 | None:intergenic | 20.0% |
| !! | AAGCACTTATAGAATTATTT+GGG | + | chr2.3:58113271-58113290 | MS.gene55898:intron | 20.0% |
| !! | ATATGATAAACTGTTTGAAA+TGG | + | chr2.3:58113424-58113443 | MS.gene55898:intron | 20.0% |
| !! | ATTCTTAGTTGTATCAAAAT+GGG | + | chr2.3:58111880-58111899 | MS.gene55898:intron | 20.0% |
| !! | CTAAAAACAGAATAATCAAA+AGG | + | chr2.3:58112562-58112581 | MS.gene55898:intron | 20.0% |
| !! | CTTATCATATTGAATATAAC+AGG | - | chr2.3:58113203-58113222 | None:intergenic | 20.0% |
| !! | TTATATCCTCAAATAATCTT+TGG | + | chr2.3:58111612-58111631 | MS.gene55898:intron | 20.0% |
| !!! | AAAAATTACTTTTCTTCATG+GGG | + | chr2.3:58111004-58111023 | MS.gene55898:intron | 20.0% |
| !!! | ATGAAAAAAATATTTTGGCA+AGG | - | chr2.3:58111744-58111763 | None:intergenic | 20.0% |
| !!! | TAAAGATTTGTTTCATTCTT+TGG | + | chr2.3:58112481-58112500 | MS.gene55898:intron | 20.0% |
| !!! | TTAACAAATGAATAGGTTTT+TGG | - | chr2.3:58112338-58112357 | None:intergenic | 20.0% |
| ! | AAAAAGTAATGAGTGTGTAA+TGG | + | chr2.3:58112644-58112663 | MS.gene55898:intron | 25.0% |
| ! | ACAAAGCTTAACAAATGAAT+AGG | - | chr2.3:58112345-58112364 | None:intergenic | 25.0% |
| ! | ATACAATACAAAACACAACA+CGG | - | chr2.3:58111134-58111153 | None:intergenic | 25.0% |
| ! | ATCTTTAATGCTTTCTTATG+AGG | + | chr2.3:58112798-58112817 | MS.gene55898:CDS | 25.0% |
| ! | CATTCTTAGTTGTATCAAAA+TGG | + | chr2.3:58111879-58111898 | MS.gene55898:intron | 25.0% |
| ! | GAATACATGAAGAAAAACTT+GGG | - | chr2.3:58112525-58112544 | None:intergenic | 25.0% |
| ! | TGCAATAGAATACATATGAT+TGG | - | chr2.3:58113531-58113550 | None:intergenic | 25.0% |
| ! | TTCTTAGTTGTATCAAAATG+GGG | + | chr2.3:58111881-58111900 | MS.gene55898:intron | 25.0% |
| ! | TTGTCAATAAAAGAGACATA+TGG | + | chr2.3:58112395-58112414 | MS.gene55898:CDS | 25.0% |
| ! | TTTGTTTCATTCTTTGGTAA+TGG | + | chr2.3:58112487-58112506 | MS.gene55898:intron | 25.0% |
| !! | ATGTTATAAGCTATTTCCAT+AGG | - | chr2.3:58113301-58113320 | None:intergenic | 25.0% |
| !! | GAAGCACTTATAGAATTATT+TGG | + | chr2.3:58113270-58113289 | MS.gene55898:intron | 25.0% |
| !! | TGTTGTGTTTTGTATTGTAT+AGG | + | chr2.3:58111134-58111153 | MS.gene55898:intron | 25.0% |
| !!! | CATTTTGATACAACTAAGAA+TGG | - | chr2.3:58111881-58111900 | None:intergenic | 25.0% |
| !!! | TGTTTTTTATCTTAACCTTC+CGG | - | chr2.3:58111696-58111715 | None:intergenic | 25.0% |
| !!! | TTCTAGTCTTGTAACTAAAA+GGG | - | chr2.3:58111404-58111423 | None:intergenic | 25.0% |
| !!! | TTTTCTCTGTTTTTTAGTCT+AGG | + | chr2.3:58111035-58111054 | MS.gene55898:intron | 25.0% |
| AACTAAAAACTCTATACCAC+CGG | - | chr2.3:58111110-58111129 | None:intergenic | 30.0% | |
| AATACCAGTCTTGATAGAAA+AGG | - | chr2.3:58112221-58112240 | None:intergenic | 30.0% | |
| AATTTAACGTGATCAGCTAT+AGG | + | chr2.3:58112268-58112287 | MS.gene55898:intron | 30.0% | |
| AATTTCTAAATCAGCACATG+TGG | + | chr2.3:58113005-58113024 | MS.gene55898:intron | 30.0% | |
| ACATTTCAACAATGCTACAT+TGG | + | chr2.3:58111788-58111807 | MS.gene55898:intron | 30.0% | |
| AGAAACCACATTGAACAAAT+TGG | + | chr2.3:58112768-58112787 | MS.gene55898:intron | 30.0% | |
| ATATGTATTCTATTGCATCC+TGG | + | chr2.3:58113534-58113553 | MS.gene55898:CDS | 30.0% | |
| ATGAAGAAAAACTTGGGAAA+TGG | - | chr2.3:58112519-58112538 | None:intergenic | 30.0% | |
| ATTGAGTCTAACAACATAGA+AGG | - | chr2.3:58111550-58111569 | None:intergenic | 30.0% | |
| CAATATGATAAGTGCATCAT+TGG | + | chr2.3:58113211-58113230 | MS.gene55898:intron | 30.0% | |
| CATTAATGAGAAGGTTTAGA+TGG | - | chr2.3:58112421-58112440 | None:intergenic | 30.0% | |
| CTATAGCGAATTTGAACAAA+TGG | - | chr2.3:58112106-58112125 | None:intergenic | 30.0% | |
| CTTATCAGCGTAGTAAATAA+TGG | - | chr2.3:58111957-58111976 | None:intergenic | 30.0% | |
| GAATGAAACAAATCTTTACC+TGG | - | chr2.3:58112479-58112498 | None:intergenic | 30.0% | |
| GGAAGGATTAACAAATATAG+CGG | + | chr2.3:58112195-58112214 | MS.gene55898:intron | 30.0% | |
| GGAATACATGAAGAAAAACT+TGG | - | chr2.3:58112526-58112545 | None:intergenic | 30.0% | |
| GGTAGATGCTAAAGTTAATA+TGG | + | chr2.3:58111424-58111443 | MS.gene55898:intron | 30.0% | |
| GTGATTTCAATTGTATATCG+CGG | + | chr2.3:58111976-58111995 | MS.gene55898:intron | 30.0% | |
| GTTCAAATTCTACTATGCTA+TGG | + | chr2.3:58112012-58112031 | MS.gene55898:intron | 30.0% | |
| TAGATATGAGATTTGTGACA+AGG | + | chr2.3:58111454-58111473 | MS.gene55898:intron | 30.0% | |
| TCTATGTTGTTAGACTCAAT+TGG | + | chr2.3:58111550-58111569 | MS.gene55898:intron | 30.0% | |
| TCTTAGTTGTATCAAAATGG+GGG | + | chr2.3:58111882-58111901 | MS.gene55898:intron | 30.0% | |
| TGACACTGTTTGAATATAAG+CGG | - | chr2.3:58113472-58113491 | None:intergenic | 30.0% | |
| TTTCTATCAAGACTGGTATT+AGG | + | chr2.3:58112221-58112240 | MS.gene55898:intron | 30.0% | |
| ! | TAATGATGTGCAACAACTTT+TGG | - | chr2.3:58113638-58113657 | None:intergenic | 30.0% |
| ! | TGCAATATCTTTTATGCTCA+AGG | - | chr2.3:58111926-58111945 | None:intergenic | 30.0% |
| !! | CTTCTAGTCTTGTAACTAAA+AGG | - | chr2.3:58111405-58111424 | None:intergenic | 30.0% |
| !! | CTTTTAGTTACAAGACTAGA+AGG | + | chr2.3:58111403-58111422 | MS.gene55898:intron | 30.0% |
| !!! | TTTTTTGGCAATGTAGTGAA+TGG | - | chr2.3:58110988-58111007 | None:intergenic | 30.0% |
| AACCTTCTCATTAATGCATC+TGG | + | chr2.3:58112425-58112444 | MS.gene55898:CDS | 35.0% | |
| AAGTAATGAGTGTGTAATGG+AGG | + | chr2.3:58112647-58112666 | MS.gene55898:intron | 35.0% | |
| AATGCTACATTGGATAAGTG+AGG | + | chr2.3:58111798-58111817 | MS.gene55898:intron | 35.0% | |
| AATGGTGTTTCCTTAGTTCA+AGG | + | chr2.3:58110888-58110907 | MS.gene55898:CDS | 35.0% | |
| ATCAGCGTAGTAAATAATGG+TGG | - | chr2.3:58111954-58111973 | None:intergenic | 35.0% | |
| ATGAGGTTATAGAAGCCTTA+GGG | + | chr2.3:58112944-58112963 | MS.gene55898:intron | 35.0% | |
| CTTTCAACAGTCAAATCCAA+AGG | - | chr2.3:58111279-58111298 | None:intergenic | 35.0% | |
| GAATTATTTGGGAGAACCTA+TGG | + | chr2.3:58113282-58113301 | MS.gene55898:intron | 35.0% | |
| GACTGTTGAAAGTTCTATTG+AGG | + | chr2.3:58111287-58111306 | MS.gene55898:CDS | 35.0% | |
| GATACAACTAAGAATGGCAA+TGG | - | chr2.3:58111875-58111894 | None:intergenic | 35.0% | |
| GTAATCCTAATGCATCAACT+GGG | + | chr2.3:58111208-58111227 | MS.gene55898:CDS | 35.0% | |
| GTCTGACCAAAGATTATTTG+AGG | - | chr2.3:58111621-58111640 | None:intergenic | 35.0% | |
| TATGAGGTTATAGAAGCCTT+AGG | + | chr2.3:58112943-58112962 | MS.gene55898:intron | 35.0% | |
| TCATCATCTTCTCAAGCTAA+TGG | + | chr2.3:58110870-58110889 | MS.gene55898:CDS | 35.0% | |
| TGGGTTTCTTTATGTGTATG+AGG | + | chr2.3:58112927-58112946 | MS.gene55898:intron | 35.0% | |
| ! | CAGTTGATGCATTAGGATTA+CGG | - | chr2.3:58111209-58111228 | None:intergenic | 35.0% |
| ! | CTCTTTTATTGACAATGCAG+AGG | - | chr2.3:58112390-58112409 | None:intergenic | 35.0% |
| ! | CTTCTCCAATTTGTTCAATG+TGG | - | chr2.3:58112776-58112795 | None:intergenic | 35.0% |
| ! | GTTACCTTGATAACCAAGAT+AGG | - | chr2.3:58112838-58112857 | None:intergenic | 35.0% |
| ! | TCGACTTCAAATTTTGCCTT+TGG | + | chr2.3:58111260-58111279 | MS.gene55898:CDS | 35.0% |
| ! | TTAGACACCAAGTTGAGATT+TGG | + | chr2.3:58111375-58111394 | MS.gene55898:intron | 35.0% |
| !! | ACAAGTGGGTTAACTTAATC+AGG | - | chr2.3:58112150-58112169 | None:intergenic | 35.0% |
| !! | ATCAGCTATAGGCTTTGTTT+AGG | + | chr2.3:58112279-58112298 | MS.gene55898:intron | 35.0% |
| !! | CAAGTGGGTTAACTTAATCA+GGG | - | chr2.3:58112149-58112168 | None:intergenic | 35.0% |
| AACTGGGCTTCTTCATTTGA+AGG | + | chr2.3:58111224-58111243 | MS.gene55898:CDS | 40.0% | |
| AATGTCAAGAGCCATGACAA+TGG | + | chr2.3:58113660-58113679 | MS.gene55898:CDS | 40.0% | |
| ACAATGGCAAGTTCTTTGCT+TGG | + | chr2.3:58113676-58113695 | MS.gene55898:CDS | 40.0% | |
| ATATGTCAGCTACTAGTTGG+AGG | - | chr2.3:58111832-58111851 | None:intergenic | 40.0% | |
| CAAAGAACTTGCCATTGTCA+TGG | - | chr2.3:58113674-58113693 | None:intergenic | 40.0% | |
| CAATGGCAAGTTCTTTGCTT+GGG | + | chr2.3:58113677-58113696 | MS.gene55898:CDS | 40.0% | |
| CCACTTGTCAGTTTCGAAAT+GGG | + | chr2.3:58112162-58112181 | MS.gene55898:intron | 40.0% | |
| CCATTTCGAAACTGACAAGT+GGG | - | chr2.3:58112164-58112183 | None:intergenic | 40.0% | |
| CGTAATCCTAATGCATCAAC+TGG | + | chr2.3:58111207-58111226 | MS.gene55898:CDS | 40.0% | |
| GAATGGCAATGGTTATAGTG+TGG | - | chr2.3:58111864-58111883 | None:intergenic | 40.0% | |
| GACATTGGACACAATTGTTG+TGG | + | chr2.3:58111071-58111090 | MS.gene55898:intron | 40.0% | |
| TCCAACTAGTAGCTGACATA+TGG | + | chr2.3:58111831-58111850 | MS.gene55898:intron | 40.0% | |
| TCCATATGTCAGCTACTAGT+TGG | - | chr2.3:58111835-58111854 | None:intergenic | 40.0% | |
| TCTATTGGCGATAATCGTCT+CGG | + | chr2.3:58113106-58113125 | MS.gene55898:CDS | 40.0% | |
| TCTTATGAGGTTAATGCCGT+CGG | + | chr2.3:58112811-58112830 | MS.gene55898:CDS | 40.0% | |
| TGAAGAAGAGAATGCTCTTC+TGG | - | chr2.3:58110850-58110869 | None:intergenic | 40.0% | |
| TGCCAGATGCATTAATGAGA+AGG | - | chr2.3:58112430-58112449 | None:intergenic | 40.0% | |
| TTGTACCAAATAGCACATCG+CGG | + | chr2.3:58112072-58112091 | MS.gene55898:intron | 40.0% | |
| ! | CAGTAATCTGGAATTCGTCT+GGG | - | chr2.3:58111655-58111674 | None:intergenic | 40.0% |
| ! | CTTTTGGACTGAGTACTCTT+TGG | - | chr2.3:58113622-58113641 | None:intergenic | 40.0% |
| AAATGGGAACGTGTCTAGGA+AGG | + | chr2.3:58112178-58112197 | MS.gene55898:intron | 45.0% | |
| AGATCTGTGTCAACTGTACC+AGG | - | chr2.3:58113555-58113574 | None:intergenic | 45.0% | |
| AGGGTCACCAAATCTCAACT+TGG | - | chr2.3:58111385-58111404 | None:intergenic | 45.0% | |
| AGTGCAAGGGTTGCATCTAT+TGG | + | chr2.3:58113091-58113110 | MS.gene55898:CDS | 45.0% | |
| AGTGTCAAAGACGATCTCGT+TGG | + | chr2.3:58113485-58113504 | MS.gene55898:intron | 45.0% | |
| ATGTGGCCTCTTCTTAAAGC+TGG | + | chr2.3:58113022-58113041 | MS.gene55898:CDS | 45.0% | |
| CCCACTTGTCAGTTTCGAAA+TGG | + | chr2.3:58112161-58112180 | MS.gene55898:intron | 45.0% | |
| CCCATTTCGAAACTGACAAG+TGG | - | chr2.3:58112165-58112184 | None:intergenic | 45.0% | |
| CGGTCCTATCTTGGTTATCA+AGG | + | chr2.3:58112831-58112850 | MS.gene55898:CDS | 45.0% | |
| CTATTGGCGATAATCGTCTC+GGG | + | chr2.3:58113107-58113126 | MS.gene55898:CDS | 45.0% | |
| GACACAATTGTTGTGGACAC+CGG | + | chr2.3:58111078-58111097 | MS.gene55898:intron | 45.0% | |
| GACTCAAACTACATGCCCTA+AGG | - | chr2.3:58112962-58112981 | None:intergenic | 45.0% | |
| GATAACCAAGATAGGACCGA+CGG | - | chr2.3:58112830-58112849 | None:intergenic | 45.0% | |
| GCAGCAGATTTGTGAGAACA+CGG | + | chr2.3:58112620-58112639 | MS.gene55898:intron | 45.0% | |
| GGGATGGTCAAGAAATTCCT+TGG | + | chr2.3:58113697-58113716 | MS.gene55898:CDS | 45.0% | |
| TATTGGCGATAATCGTCTCG+GGG | + | chr2.3:58113108-58113127 | MS.gene55898:CDS | 45.0% | |
| TCTGGAAGCTCCTTGAACTA+AGG | - | chr2.3:58110901-58110920 | None:intergenic | 45.0% | |
| TTAAAGCTGGAGGTGGCATT+GGG | + | chr2.3:58113035-58113054 | MS.gene55898:CDS | 45.0% | |
| TTAGTTCAAGGAGCTTCCAG+AGG | + | chr2.3:58110900-58110919 | MS.gene55898:CDS | 45.0% | |
| TTCGAAATGGGAACGTGTCT+AGG | + | chr2.3:58112174-58112193 | MS.gene55898:intron | 45.0% | |
| ! | AGAAGCCCAGTTGATGCATT+AGG | - | chr2.3:58111216-58111235 | None:intergenic | 45.0% |
| ! | GAATTCAAGACCGATTCCTC+TGG | - | chr2.3:58110919-58110938 | None:intergenic | 45.0% |
| ! | GCAGTAATCTGGAATTCGTC+TGG | - | chr2.3:58111656-58111675 | None:intergenic | 45.0% |
| ! | TTGTTCCGCGATGTGCTATT+TGG | - | chr2.3:58112080-58112099 | None:intergenic | 45.0% |
| !! | AGCCATGGAAGTGTTAAGAG+TGG | - | chr2.3:58110799-58110818 | None:intergenic | 45.0% |
| !! | ATGGAAGTGTTAAGAGTGGG+GGG | - | chr2.3:58110795-58110814 | None:intergenic | 45.0% |
| !! | CATGGAAGTGTTAAGAGTGG+GGG | - | chr2.3:58110796-58110815 | None:intergenic | 45.0% |
| !! | CCATGGAAGTGTTAAGAGTG+GGG | - | chr2.3:58110797-58110816 | None:intergenic | 45.0% |
| !! | GCCATGGAAGTGTTAAGAGT+GGG | - | chr2.3:58110798-58110817 | None:intergenic | 45.0% |
| !! | TGTGGCTAGTTTGAGTGCAA+GGG | + | chr2.3:58113078-58113097 | MS.gene55898:CDS | 45.0% |
| !! | TTGTGGCTAGTTTGAGTGCA+AGG | + | chr2.3:58113077-58113096 | MS.gene55898:CDS | 45.0% |
| !!! | CTGTTTTTAGTGCGTGCAAG+CGG | - | chr2.3:58112552-58112571 | None:intergenic | 45.0% |
| !!! | TGTTTTTAGTGCGTGCAAGC+GGG | - | chr2.3:58112551-58112570 | None:intergenic | 45.0% |
| ATCTTAACCTTCCGGCACCA+AGG | - | chr2.3:58111688-58111707 | None:intergenic | 50.0% | |
| ATTACTGCTGCCCTCTTCCT+TGG | + | chr2.3:58111668-58111687 | MS.gene55898:intron | 50.0% | |
| ATTGGCGATAATCGTCTCGG+GGG | + | chr2.3:58113109-58113128 | MS.gene55898:CDS | 50.0% | |
| CAAGGAGCTTCCAGAGGAAT+CGG | + | chr2.3:58110906-58110925 | MS.gene55898:CDS | 50.0% | |
| CCCCACTCTTAACACTTCCA+TGG | + | chr2.3:58110794-58110813 | MS.gene55898:CDS | 50.0% | |
| CCTCTTCTTAAAGCTGGAGG+TGG | + | chr2.3:58113028-58113047 | MS.gene55898:CDS | 50.0% | |
| CTTAAAGCTGGAGGTGGCAT+TGG | + | chr2.3:58113034-58113053 | MS.gene55898:CDS | 50.0% | |
| GGAAAGAAGTGGTGCAGTTG+TGG | + | chr2.3:58113060-58113079 | MS.gene55898:CDS | 50.0% | |
| GGCAAGTTCTTTGCTTGGGA+TGG | + | chr2.3:58113681-58113700 | MS.gene55898:CDS | 50.0% | |
| GTTGGAGTTTGCGAGGAAGA+AGG | + | chr2.3:58113503-58113522 | MS.gene55898:CDS | 50.0% | |
| TAATGCCGTCGGTCCTATCT+TGG | + | chr2.3:58112822-58112841 | MS.gene55898:CDS | 50.0% | |
| TGGCCTCTTCTTAAAGCTGG+AGG | + | chr2.3:58113025-58113044 | MS.gene55898:CDS | 50.0% | |
| TGGCTACTGATAGAAGCCGA+GGG | - | chr2.3:58110830-58110849 | None:intergenic | 50.0% | |
| TTACCTGGTTGCAGCACTTC+AGG | - | chr2.3:58112464-58112483 | None:intergenic | 50.0% | |
| ! | GCGGCCTTTTCTATCAAGAC+TGG | + | chr2.3:58112214-58112233 | MS.gene55898:intron | 50.0% |
| ! | TCGGGGGTTGGCATTCATAT+CGG | + | chr2.3:58113125-58113144 | MS.gene55898:CDS | 50.0% |
| !! | ATACCTGAAGTGCTGCAACC+AGG | + | chr2.3:58112458-58112477 | MS.gene55898:CDS | 50.0% |
| !! | CCACCTCCAGCTTTAAGAAG+AGG | - | chr2.3:58113031-58113050 | None:intergenic | 50.0% |
| !! | GGAAGCACTGACACAGACAT+TGG | + | chr2.3:58111056-58111075 | MS.gene55898:intron | 50.0% |
| !! | TGGAAGTGTTAAGAGTGGGG+GGG | - | chr2.3:58110794-58110813 | None:intergenic | 50.0% |
| !!! | GTTTTTAGTGCGTGCAAGCG+GGG | - | chr2.3:58112550-58112569 | None:intergenic | 50.0% |
| AAGTGTTAAGAGTGGGGGGG+TGG | - | chr2.3:58110791-58110810 | None:intergenic | 55.0% | |
| CGATCTCGTTGGAGTTTGCG+AGG | + | chr2.3:58113496-58113515 | MS.gene55898:CDS | 55.0% | |
| CTGGCTACTGATAGAAGCCG+AGG | - | chr2.3:58110831-58110850 | None:intergenic | 55.0% | |
| GGAAGAGGGCAGCAGTAATC+TGG | - | chr2.3:58111667-58111686 | None:intergenic | 55.0% | |
| GGCTACTGATAGAAGCCGAG+GGG | - | chr2.3:58110829-58110848 | None:intergenic | 55.0% | |
| ! | GGCATTGGGACGGAAAGAAG+TGG | + | chr2.3:58113049-58113068 | MS.gene55898:CDS | 55.0% |
| ACCTTCCGGCACCAAGGAAG+AGG | - | chr2.3:58111682-58111701 | None:intergenic | 60.0% | |
| CCATGGCTTCACGTTCCCCT+CGG | + | chr2.3:58110811-58110830 | MS.gene55898:CDS | 60.0% | |
| CCTTCCGGCACCAAGGAAGA+GGG | - | chr2.3:58111681-58111700 | None:intergenic | 60.0% | |
| GCGATAATCGTCTCGGGGGT+TGG | + | chr2.3:58113113-58113132 | MS.gene55898:CDS | 60.0% | |
| TCTATACCACCGGCACGTGC+CGG | - | chr2.3:58111100-58111119 | None:intergenic | 60.0% | |
| TTTAGTGCGTGCAAGCGGGG+TGG | - | chr2.3:58112547-58112566 | None:intergenic | 60.0% | |
| ! | AGCTGGAGGTGGCATTGGGA+CGG | + | chr2.3:58113039-58113058 | MS.gene55898:CDS | 60.0% |
| CCGAGGGGAACGTGAAGCCA+TGG | - | chr2.3:58110814-58110833 | None:intergenic | 65.0% | |
| TTGTGGACACCGGCACGTGC+CGG | + | chr2.3:58111088-58111107 | MS.gene55898:intron | 65.0% | |
| ! | GCTGCCCTCTTCCTTGGTGC+CGG | + | chr2.3:58111674-58111693 | MS.gene55898:intron | 65.0% |
| !! | CCCTCTTCCTTGGTGCCGGA+AGG | + | chr2.3:58111678-58111697 | MS.gene55898:intron | 65.0% |
| TGGACACCGGCACGTGCCGG+TGG | + | chr2.3:58111091-58111110 | MS.gene55898:intron | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr2.3 | gene | 58110762 | 58113722 | 58110762 | ID=MS.gene55898 |
| chr2.3 | mRNA | 58110762 | 58113722 | 58110762 | ID=MS.gene55898.t1;Parent=MS.gene55898 |
| chr2.3 | exon | 58110762 | 58110938 | 58110762 | ID=MS.gene55898.t1.exon1;Parent=MS.gene55898.t1 |
| chr2.3 | CDS | 58110762 | 58110938 | 58110762 | ID=cds.MS.gene55898.t1;Parent=MS.gene55898.t1 |
| chr2.3 | exon | 58111156 | 58111308 | 58111156 | ID=MS.gene55898.t1.exon2;Parent=MS.gene55898.t1 |
| chr2.3 | CDS | 58111156 | 58111308 | 58111156 | ID=cds.MS.gene55898.t1;Parent=MS.gene55898.t1 |
| chr2.3 | exon | 58112386 | 58112479 | 58112386 | ID=MS.gene55898.t1.exon3;Parent=MS.gene55898.t1 |
| chr2.3 | CDS | 58112386 | 58112479 | 58112386 | ID=cds.MS.gene55898.t1;Parent=MS.gene55898.t1 |
| chr2.3 | exon | 58112770 | 58112852 | 58112770 | ID=MS.gene55898.t1.exon4;Parent=MS.gene55898.t1 |
| chr2.3 | CDS | 58112770 | 58112852 | 58112770 | ID=cds.MS.gene55898.t1;Parent=MS.gene55898.t1 |
| chr2.3 | exon | 58113019 | 58113172 | 58113019 | ID=MS.gene55898.t1.exon5;Parent=MS.gene55898.t1 |
| chr2.3 | CDS | 58113019 | 58113172 | 58113019 | ID=cds.MS.gene55898.t1;Parent=MS.gene55898.t1 |
| chr2.3 | exon | 58113487 | 58113722 | 58113487 | ID=MS.gene55898.t1.exon6;Parent=MS.gene55898.t1 |
| chr2.3 | CDS | 58113487 | 58113722 | 58113487 | ID=cds.MS.gene55898.t1;Parent=MS.gene55898.t1 |
| Gene Sequence |
| Protein sequence |
