Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene035406.t1 | XP_013445151.1 | 96.7 | 302 | 9 | 1 | 1 | 302 | 1 | 301 | 3.90E-161 | 577.4 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene035406.t1 | Q9LTV6 | 77.9 | 298 | 64 | 2 | 6 | 302 | 2 | 298 | 1.5e-132 | 473.8 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene035406.t1 | A0A072TP38 | 96.7 | 302 | 9 | 1 | 1 | 302 | 1 | 301 | 2.8e-161 | 577.4 |
TFs/TRs:
Gene ID | Type | Classification |
---|
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|
PPI:
Gene1 | Gene2 | Type |
---|---|---|
MS.gene035406 | MS.gene67886 | PPI |
MS.gene035406 | MS.gene55898 | PPI |
MS.gene035406 | MS.gene00059 | PPI |
MS.gene035406 | MS.gene058335 | PPI |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene035406.t1 | MTR_8g442750 | 96.689 | 302 | 9 | 1 | 1 | 302 | 1 | 301 | 0.0 | 592 |
MS.gene035406.t1 | MTR_4g064887 | 31.274 | 259 | 158 | 7 | 14 | 266 | 15 | 259 | 3.98e-25 | 101 |
MS.gene035406.t1 | MTR_7g113650 | 30.147 | 272 | 158 | 9 | 9 | 265 | 34 | 288 | 3.16e-23 | 97.1 |
MS.gene035406.t1 | MTR_7g063270 | 29.845 | 258 | 166 | 6 | 14 | 266 | 16 | 263 | 3.67e-23 | 96.3 |
MS.gene035406.t1 | MTR_4g132850 | 30.469 | 256 | 167 | 3 | 11 | 266 | 4 | 248 | 1.00e-22 | 95.1 |
MS.gene035406.t1 | MTR_4g131740 | 31.203 | 266 | 161 | 9 | 14 | 269 | 40 | 293 | 3.43e-22 | 94.4 |
MS.gene035406.t1 | MTR_1g082760 | 29.323 | 266 | 168 | 6 | 9 | 265 | 34 | 288 | 8.47e-22 | 93.2 |
MS.gene035406.t1 | MTR_4g064883 | 29.528 | 254 | 169 | 5 | 14 | 266 | 14 | 258 | 3.37e-21 | 91.3 |
MS.gene035406.t1 | MTR_7g063260 | 28.409 | 264 | 161 | 7 | 14 | 265 | 16 | 263 | 7.78e-21 | 90.1 |
MS.gene035406.t1 | MTR_3g068070 | 29.008 | 262 | 160 | 9 | 14 | 266 | 15 | 259 | 7.94e-21 | 90.1 |
MS.gene035406.t1 | MTR_3g068065 | 28.517 | 263 | 160 | 11 | 14 | 266 | 17 | 261 | 1.31e-20 | 89.7 |
MS.gene035406.t1 | MTR_3g068155 | 29.771 | 262 | 158 | 10 | 14 | 266 | 19 | 263 | 3.93e-20 | 88.2 |
MS.gene035406.t1 | MTR_7g071680 | 30.314 | 287 | 172 | 8 | 4 | 270 | 19 | 297 | 4.29e-20 | 88.6 |
MS.gene035406.t1 | MTR_3g068175 | 29.771 | 262 | 158 | 10 | 14 | 266 | 17 | 261 | 9.22e-20 | 87.4 |
MS.gene035406.t1 | MTR_4g052350 | 30.970 | 268 | 150 | 10 | 14 | 268 | 14 | 259 | 2.69e-19 | 85.9 |
MS.gene035406.t1 | MTR_7g063330 | 28.137 | 263 | 164 | 8 | 14 | 266 | 15 | 262 | 3.64e-19 | 85.5 |
MS.gene035406.t1 | MTR_7g063320 | 27.839 | 273 | 157 | 8 | 14 | 268 | 15 | 265 | 4.13e-19 | 85.5 |
MS.gene035406.t1 | MTR_4g052320 | 30.292 | 274 | 145 | 9 | 14 | 268 | 8 | 254 | 4.19e-19 | 85.5 |
MS.gene035406.t1 | MTR_1196s0010 | 30.588 | 255 | 157 | 8 | 17 | 268 | 277 | 514 | 6.35e-19 | 87.0 |
MS.gene035406.t1 | MTR_3g068085 | 28.462 | 260 | 164 | 8 | 14 | 266 | 15 | 259 | 6.83e-19 | 84.7 |
MS.gene035406.t1 | MTR_4g052300 | 29.078 | 282 | 155 | 9 | 14 | 277 | 8 | 262 | 9.29e-19 | 84.3 |
MS.gene035406.t1 | MTR_3g085740 | 28.674 | 279 | 161 | 8 | 3 | 268 | 67 | 320 | 1.40e-18 | 84.7 |
MS.gene035406.t1 | MTR_7g063390 | 27.957 | 279 | 173 | 9 | 1 | 266 | 1 | 264 | 1.83e-18 | 83.6 |
MS.gene035406.t1 | MTR_3g068175 | 29.389 | 262 | 163 | 10 | 14 | 266 | 17 | 265 | 3.08e-18 | 83.2 |
MS.gene035406.t1 | MTR_7g094510 | 30.000 | 260 | 162 | 9 | 14 | 265 | 6 | 253 | 3.25e-18 | 82.8 |
MS.gene035406.t1 | MTR_3g020670 | 30.851 | 282 | 158 | 11 | 3 | 266 | 7 | 269 | 7.53e-18 | 82.0 |
MS.gene035406.t1 | MTR_4g052340 | 29.588 | 267 | 159 | 8 | 14 | 270 | 14 | 261 | 1.62e-17 | 80.9 |
MS.gene035406.t1 | MTR_7g063360 | 27.817 | 284 | 167 | 10 | 1 | 266 | 1 | 264 | 5.99e-17 | 79.3 |
MS.gene035406.t1 | MTR_8g096620 | 31.390 | 223 | 138 | 5 | 9 | 228 | 40 | 250 | 7.88e-17 | 80.1 |
MS.gene035406.t1 | MTR_8g096580 | 33.168 | 202 | 115 | 6 | 12 | 207 | 43 | 230 | 1.22e-16 | 79.3 |
MS.gene035406.t1 | MTR_4g064887 | 32.500 | 200 | 115 | 7 | 14 | 207 | 15 | 200 | 2.85e-16 | 76.6 |
MS.gene035406.t1 | MTR_4g058840 | 29.885 | 261 | 164 | 10 | 14 | 265 | 11 | 261 | 4.87e-16 | 77.0 |
MS.gene035406.t1 | MTR_4g058820 | 29.885 | 261 | 164 | 10 | 14 | 265 | 11 | 261 | 4.87e-16 | 77.0 |
MS.gene035406.t1 | MTR_1g068955 | 30.797 | 276 | 164 | 9 | 1 | 264 | 1 | 261 | 1.06e-15 | 76.3 |
MS.gene035406.t1 | MTR_7g105460 | 28.881 | 277 | 157 | 11 | 14 | 273 | 13 | 266 | 1.19e-15 | 75.9 |
MS.gene035406.t1 | MTR_7g105580 | 30.769 | 260 | 140 | 11 | 14 | 265 | 8 | 235 | 5.71e-15 | 73.6 |
MS.gene035406.t1 | MTR_4g078630 | 29.268 | 287 | 161 | 11 | 1 | 266 | 5 | 270 | 2.67e-14 | 72.0 |
MS.gene035406.t1 | MTR_2g090165 | 28.253 | 269 | 172 | 11 | 14 | 275 | 6 | 260 | 3.27e-14 | 71.6 |
MS.gene035406.t1 | MTR_7g110160 | 27.675 | 271 | 161 | 10 | 14 | 279 | 6 | 246 | 3.80e-14 | 71.2 |
MS.gene035406.t1 | MTR_4g064883 | 30.769 | 195 | 125 | 5 | 14 | 207 | 14 | 199 | 1.50e-13 | 68.9 |
MS.gene035406.t1 | MTR_1g051165 | 28.674 | 279 | 172 | 12 | 6 | 268 | 5 | 272 | 1.83e-13 | 69.7 |
MS.gene035406.t1 | MTR_7g110140 | 29.740 | 269 | 171 | 9 | 14 | 275 | 6 | 263 | 3.25e-13 | 68.6 |
MS.gene035406.t1 | MTR_7g083870 | 29.151 | 271 | 155 | 12 | 14 | 266 | 35 | 286 | 6.96e-13 | 68.2 |
MS.gene035406.t1 | MTR_7g105590 | 30.457 | 197 | 124 | 5 | 14 | 208 | 8 | 193 | 7.40e-13 | 66.6 |
MS.gene035406.t1 | MTR_7g110130 | 26.641 | 259 | 173 | 9 | 14 | 266 | 6 | 253 | 5.46e-12 | 65.1 |
MS.gene035406.t1 | MTR_7g063270 | 36.082 | 97 | 56 | 3 | 174 | 266 | 120 | 214 | 2.26e-11 | 62.8 |
MS.gene035406.t1 | MTR_3g098470 | 29.054 | 148 | 97 | 2 | 15 | 162 | 33 | 172 | 6.34e-11 | 62.4 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene035406.t1 | AT3G12800 | 76.510 | 298 | 68 | 2 | 6 | 302 | 2 | 298 | 4.52e-157 | 440 |
MS.gene035406.t1 | AT2G07640 | 75.333 | 150 | 36 | 1 | 132 | 280 | 1 | 150 | 1.07e-69 | 213 |
MS.gene035406.t1 | AT3G05260 | 31.022 | 274 | 168 | 8 | 5 | 269 | 27 | 288 | 1.53e-26 | 106 |
MS.gene035406.t1 | AT1G54870 | 30.769 | 260 | 161 | 6 | 14 | 265 | 82 | 330 | 6.46e-26 | 105 |
MS.gene035406.t1 | AT1G54870 | 30.769 | 260 | 161 | 6 | 14 | 265 | 84 | 332 | 7.15e-26 | 105 |
MS.gene035406.t1 | AT1G63380 | 31.679 | 262 | 159 | 10 | 14 | 265 | 15 | 266 | 2.56e-24 | 99.8 |
MS.gene035406.t1 | AT1G63380 | 31.679 | 262 | 159 | 10 | 14 | 265 | 19 | 270 | 2.83e-24 | 99.8 |
MS.gene035406.t1 | AT1G63380 | 31.679 | 262 | 159 | 10 | 14 | 265 | 22 | 273 | 2.84e-24 | 100 |
MS.gene035406.t1 | AT1G63380 | 31.679 | 262 | 159 | 10 | 14 | 265 | 17 | 268 | 3.15e-24 | 99.8 |
MS.gene035406.t1 | AT2G17845 | 33.962 | 265 | 151 | 11 | 14 | 265 | 47 | 300 | 5.28e-24 | 99.8 |
MS.gene035406.t1 | AT1G36580 | 68.254 | 63 | 20 | 0 | 229 | 291 | 1 | 63 | 1.03e-23 | 96.3 |
MS.gene035406.t1 | AT4G05530 | 30.469 | 256 | 167 | 2 | 11 | 266 | 6 | 250 | 1.67e-23 | 97.1 |
MS.gene035406.t1 | AT1G52340 | 31.522 | 276 | 161 | 10 | 14 | 273 | 18 | 281 | 1.40e-22 | 95.1 |
MS.gene035406.t1 | AT1G62610 | 31.298 | 262 | 160 | 10 | 14 | 265 | 14 | 265 | 2.56e-22 | 94.4 |
MS.gene035406.t1 | AT1G62610 | 31.298 | 262 | 160 | 10 | 14 | 265 | 15 | 266 | 2.74e-22 | 94.4 |
MS.gene035406.t1 | AT1G62610 | 31.298 | 262 | 160 | 10 | 14 | 265 | 19 | 270 | 2.78e-22 | 94.4 |
MS.gene035406.t1 | AT1G62610 | 31.298 | 262 | 160 | 10 | 14 | 265 | 13 | 264 | 2.93e-22 | 94.4 |
MS.gene035406.t1 | AT2G29150 | 28.846 | 260 | 160 | 7 | 14 | 265 | 16 | 258 | 2.43e-21 | 91.7 |
MS.gene035406.t1 | AT2G29290 | 30.451 | 266 | 169 | 9 | 14 | 275 | 7 | 260 | 4.54e-21 | 90.9 |
MS.gene035406.t1 | AT5G50600 | 32.487 | 197 | 122 | 3 | 12 | 207 | 43 | 229 | 1.30e-20 | 90.9 |
MS.gene035406.t1 | AT5G50700 | 32.487 | 197 | 122 | 3 | 12 | 207 | 43 | 229 | 1.30e-20 | 90.9 |
MS.gene035406.t1 | AT2G29260 | 29.688 | 256 | 166 | 6 | 14 | 266 | 68 | 312 | 1.60e-20 | 90.1 |
MS.gene035406.t1 | AT3G55310 | 32.584 | 267 | 149 | 12 | 14 | 265 | 17 | 267 | 2.73e-20 | 89.0 |
MS.gene035406.t1 | AT3G55290 | 32.700 | 263 | 154 | 11 | 14 | 265 | 18 | 268 | 4.45e-20 | 88.2 |
MS.gene035406.t1 | AT3G55290 | 32.700 | 263 | 154 | 11 | 14 | 265 | 17 | 267 | 4.80e-20 | 88.2 |
MS.gene035406.t1 | AT5G18210 | 30.798 | 263 | 161 | 9 | 14 | 266 | 8 | 259 | 5.82e-20 | 87.8 |
MS.gene035406.t1 | AT2G29370 | 27.734 | 256 | 171 | 6 | 14 | 266 | 16 | 260 | 1.01e-19 | 87.0 |
MS.gene035406.t1 | AT2G29360 | 28.519 | 270 | 169 | 9 | 14 | 275 | 16 | 269 | 1.07e-19 | 87.0 |
MS.gene035406.t1 | AT3G46170 | 33.333 | 267 | 147 | 11 | 14 | 265 | 26 | 276 | 1.23e-19 | 87.4 |
MS.gene035406.t1 | AT1G07440 | 28.889 | 270 | 169 | 8 | 14 | 276 | 12 | 265 | 3.78e-19 | 85.5 |
MS.gene035406.t1 | AT2G29310 | 28.676 | 272 | 168 | 10 | 14 | 276 | 7 | 261 | 4.47e-19 | 85.1 |
MS.gene035406.t1 | AT5G06060 | 27.820 | 266 | 178 | 6 | 14 | 276 | 9 | 263 | 4.85e-19 | 85.1 |
MS.gene035406.t1 | AT3G51680 | 30.877 | 285 | 169 | 10 | 5 | 270 | 23 | 298 | 7.30e-19 | 85.5 |
MS.gene035406.t1 | AT2G29340 | 29.391 | 279 | 181 | 7 | 14 | 289 | 7 | 272 | 1.31e-18 | 84.7 |
MS.gene035406.t1 | AT3G04000 | 29.474 | 285 | 171 | 9 | 1 | 268 | 1 | 272 | 3.81e-18 | 82.8 |
MS.gene035406.t1 | AT2G29350 | 27.099 | 262 | 162 | 8 | 14 | 265 | 15 | 257 | 5.01e-18 | 82.4 |
MS.gene035406.t1 | AT2G29320 | 27.715 | 267 | 176 | 6 | 14 | 275 | 13 | 267 | 6.75e-18 | 82.0 |
MS.gene035406.t1 | AT2G29330 | 30.545 | 275 | 157 | 10 | 14 | 275 | 7 | 260 | 1.17e-17 | 81.3 |
MS.gene035406.t1 | AT4G13180 | 29.057 | 265 | 160 | 10 | 14 | 266 | 13 | 261 | 2.37e-17 | 80.5 |
MS.gene035406.t1 | AT2G29340 | 28.947 | 266 | 175 | 6 | 14 | 276 | 7 | 261 | 2.47e-17 | 80.5 |
MS.gene035406.t1 | AT4G03140 | 29.670 | 273 | 168 | 6 | 14 | 275 | 78 | 337 | 4.38e-17 | 80.9 |
MS.gene035406.t1 | AT3G26770 | 26.394 | 269 | 165 | 9 | 14 | 266 | 41 | 292 | 4.96e-17 | 80.1 |
MS.gene035406.t1 | AT1G07450 | 27.407 | 270 | 171 | 8 | 14 | 275 | 8 | 260 | 1.27e-16 | 78.6 |
MS.gene035406.t1 | AT2G30670 | 27.444 | 266 | 179 | 6 | 14 | 276 | 7 | 261 | 1.79e-16 | 78.2 |
MS.gene035406.t1 | AT5G18210 | 31.154 | 260 | 156 | 10 | 14 | 261 | 8 | 256 | 2.60e-16 | 77.8 |
MS.gene035406.t1 | AT3G47350 | 32.338 | 201 | 119 | 5 | 12 | 208 | 42 | 229 | 6.38e-16 | 77.0 |
MS.gene035406.t1 | AT2G47140 | 28.679 | 265 | 169 | 10 | 14 | 271 | 6 | 257 | 7.35e-16 | 76.3 |
MS.gene035406.t1 | AT3G47350 | 32.338 | 201 | 119 | 5 | 12 | 208 | 42 | 229 | 9.28e-16 | 76.6 |
MS.gene035406.t1 | AT1G24360 | 28.148 | 270 | 172 | 7 | 1 | 268 | 70 | 319 | 1.84e-15 | 75.9 |
MS.gene035406.t1 | AT2G29290 | 28.980 | 245 | 158 | 9 | 35 | 275 | 11 | 243 | 2.77e-15 | 74.3 |
MS.gene035406.t1 | AT2G47130 | 28.519 | 270 | 162 | 11 | 14 | 271 | 6 | 256 | 3.76e-15 | 74.3 |
MS.gene035406.t1 | AT3G47360 | 29.534 | 193 | 125 | 4 | 17 | 208 | 48 | 230 | 5.10e-15 | 74.7 |
MS.gene035406.t1 | AT2G29300 | 26.792 | 265 | 163 | 9 | 14 | 266 | 7 | 252 | 6.32e-15 | 73.6 |
MS.gene035406.t1 | AT2G29300 | 26.792 | 265 | 163 | 9 | 14 | 266 | 7 | 252 | 6.56e-15 | 73.9 |
MS.gene035406.t1 | AT2G47120 | 28.102 | 274 | 157 | 11 | 14 | 271 | 7 | 256 | 7.45e-15 | 73.6 |
MS.gene035406.t1 | AT2G47120 | 28.102 | 274 | 157 | 11 | 14 | 271 | 6 | 255 | 8.94e-15 | 73.2 |
MS.gene035406.t1 | AT5G50770 | 34.343 | 198 | 113 | 5 | 12 | 205 | 43 | 227 | 1.05e-14 | 73.9 |
MS.gene035406.t1 | AT3G26760 | 27.372 | 274 | 176 | 8 | 14 | 275 | 36 | 298 | 1.61e-14 | 73.2 |
MS.gene035406.t1 | AT4G10020 | 28.283 | 198 | 125 | 4 | 7 | 199 | 40 | 225 | 2.56e-14 | 73.2 |
MS.gene035406.t1 | AT3G29250 | 29.259 | 270 | 155 | 12 | 12 | 266 | 42 | 290 | 7.13e-14 | 71.2 |
MS.gene035406.t1 | AT3G29250 | 29.044 | 272 | 157 | 12 | 14 | 270 | 6 | 256 | 1.73e-13 | 69.3 |
MS.gene035406.t1 | AT3G29250 | 29.478 | 268 | 153 | 12 | 14 | 266 | 42 | 288 | 3.59e-13 | 68.9 |
MS.gene035406.t1 | AT2G29350 | 25.424 | 236 | 147 | 8 | 40 | 265 | 3 | 219 | 2.70e-12 | 65.5 |
MS.gene035406.t1 | AT3G42960 | 29.699 | 266 | 153 | 11 | 17 | 265 | 11 | 259 | 2.93e-12 | 66.2 |
MS.gene035406.t1 | AT3G29260 | 29.699 | 266 | 152 | 13 | 14 | 265 | 6 | 250 | 5.64e-12 | 65.1 |
MS.gene035406.t1 | AT2G29310 | 26.172 | 256 | 163 | 10 | 30 | 276 | 21 | 259 | 9.10e-12 | 64.7 |
MS.gene035406.t1 | AT3G47350 | 36.893 | 103 | 64 | 1 | 12 | 113 | 42 | 144 | 9.56e-12 | 64.7 |
MS.gene035406.t1 | AT3G03980 | 27.206 | 272 | 167 | 11 | 11 | 265 | 11 | 268 | 1.61e-11 | 63.9 |
MS.gene035406.t1 | AT5G50690 | 28.141 | 199 | 132 | 3 | 12 | 209 | 43 | 231 | 5.83e-11 | 62.8 |
MS.gene035406.t1 | AT5G50590 | 28.141 | 199 | 132 | 3 | 12 | 209 | 43 | 231 | 5.83e-11 | 62.8 |
MS.gene035406.t1 | AT2G29320 | 25.296 | 253 | 168 | 8 | 30 | 275 | 11 | 249 | 6.96e-11 | 62.0 |
MS.gene035406.t1 | AT5G50690 | 33.333 | 132 | 87 | 1 | 12 | 142 | 43 | 174 | 8.02e-11 | 61.6 |
MS.gene035406.t1 | AT5G50590 | 33.333 | 132 | 87 | 1 | 12 | 142 | 43 | 174 | 8.02e-11 | 61.6 |
Find 85 sgRNAs with CRISPR-Local
Find 272 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
AACACCAATTGGTTCATTTC+TGG | 0.141423 | 8.2:-52672813 | None:intergenic |
CGCTTTCGATTCCTGCTGTT+GGG | 0.266199 | 8.2:+52668933 | MS.gene035406:CDS |
ATTAGTGCTACCTTGCATTA+TGG | 0.276429 | 8.2:+52670411 | MS.gene035406:CDS |
ATGCCAGGAGTGTCACTTAT+TGG | 0.283238 | 8.2:-52670775 | None:intergenic |
CCTTGCATTATGGAGCTTCT+TGG | 0.293806 | 8.2:+52670421 | MS.gene035406:CDS |
ACTGGCGGAGCGTCGGGAAT+TGG | 0.320337 | 8.2:+52668812 | MS.gene035406:CDS |
TTCAAACCAGAAATCTTAAA+AGG | 0.320970 | 8.2:+52668773 | MS.gene035406:CDS |
GGCAAAGTAGCTTTAATAAC+TGG | 0.335212 | 8.2:+52668794 | MS.gene035406:CDS |
TGTATAAACTTGGGGAGAAA+TGG | 0.343265 | 8.2:+52670851 | MS.gene035406:CDS |
CCTCTGCTACCTATTTCTTC+AGG | 0.344151 | 8.2:-52670811 | None:intergenic |
AAGAAACTTGGCACTGGAAT+GGG | 0.348357 | 8.2:+52670711 | MS.gene035406:CDS |
ATTCCTGCTGTTGGGTTTGA+AGG | 0.357334 | 8.2:+52668941 | MS.gene035406:CDS |
GTTTGAAATATCAACGCAAT+TGG | 0.363203 | 8.2:+52668835 | MS.gene035406:CDS |
ACCTGTCTCACTGCCTCCTT+TGG | 0.366952 | 8.2:-52672767 | None:intergenic |
TTAATAACTGGCGGAGCGTC+GGG | 0.374098 | 8.2:+52668806 | MS.gene035406:CDS |
AGTTCTTCAATCTGCTGTTT+CGG | 0.377117 | 8.2:+52668901 | MS.gene035406:CDS |
TTTGAAATATCAACGCAATT+GGG | 0.380854 | 8.2:+52668836 | MS.gene035406:CDS |
TCGCTTTCGATTCCTGCTGT+TGG | 0.383020 | 8.2:+52668932 | MS.gene035406:CDS |
CTGAGGATCTTTCGCCGAAT+GGG | 0.391331 | 8.2:+52669074 | MS.gene035406:CDS |
CTGGCGGAGCGTCGGGAATT+GGG | 0.395868 | 8.2:+52668813 | MS.gene035406:CDS |
GATTATGATATTCGAGTCAA+TGG | 0.397358 | 8.2:+52670739 | MS.gene035406:CDS |
TTCTGGTTTGAAGGGTGATT+CGG | 0.401695 | 8.2:-52668762 | None:intergenic |
CACTCCTGGCATGAGTAAAC+TGG | 0.411577 | 8.2:+52670786 | MS.gene035406:CDS |
AAACTGGCTCCTGAAGAAAT+AGG | 0.417404 | 8.2:+52670802 | MS.gene035406:CDS |
TGTGAAGGAAAATACATTAA+CGG | 0.419004 | 8.2:+52672692 | MS.gene035406:intron |
GTATAAACTTGGGGAGAAAT+GGG | 0.441031 | 8.2:+52670852 | MS.gene035406:CDS |
ATGGAGGACTTTGGCTGAGC+CGG | 0.441556 | 8.2:+52672732 | MS.gene035406:CDS |
TTTAATAACTGGCGGAGCGT+CGG | 0.442410 | 8.2:+52668805 | MS.gene035406:CDS |
TGAAGGGGATGTGAGGAAGC+AGG | 0.455697 | 8.2:+52668958 | MS.gene035406:CDS |
GCTGAGGATCTTTCGCCGAA+TGG | 0.457228 | 8.2:+52669073 | MS.gene035406:CDS |
GGAGACACTATGATAGTTGA+TGG | 0.460768 | 8.2:+52672713 | MS.gene035406:CDS |
ATTCTTGTTAATGCTGCTGC+TGG | 0.464854 | 8.2:+52669034 | MS.gene035406:CDS |
CTCTTCTTAGCATCAGATGC+AGG | 0.469651 | 8.2:+52670892 | MS.gene035406:CDS |
TTCCTGCTGTTGGGTTTGAA+GGG | 0.470572 | 8.2:+52668942 | MS.gene035406:CDS |
GAAATGCCTCTGTATAAACT+TGG | 0.470825 | 8.2:+52670841 | MS.gene035406:CDS |
CAGGGTCATATTAGGTGTAA+TGG | 0.474492 | 8.2:+52669714 | MS.gene035406:intron |
CACTTAAGTATCTCAAGAAA+GGG | 0.475461 | 8.2:+52670346 | MS.gene035406:CDS |
GCCAAAGGAGGCAGTGAGAC+AGG | 0.476361 | 8.2:+52672766 | MS.gene035406:CDS |
AGATCCAGAAATGAACCAAT+TGG | 0.476611 | 8.2:+52672809 | MS.gene035406:CDS |
CAAGAAACTTGGCACTGGAA+TGG | 0.477594 | 8.2:+52670710 | MS.gene035406:CDS |
GCACTTAAGTATCTCAAGAA+AGG | 0.480331 | 8.2:+52670345 | MS.gene035406:CDS |
TGGAGCGTCGGTAGCTGTGA+TGG | 0.491004 | 8.2:+52668865 | MS.gene035406:CDS |
TTTAAGATTTCTGGTTTGAA+GGG | 0.496175 | 8.2:-52668770 | None:intergenic |
TCACCAGTTCGAAACCCATT+CGG | 0.500361 | 8.2:-52669088 | None:intergenic |
AAATGCCTCTGTATAAACTT+GGG | 0.505018 | 8.2:+52670842 | MS.gene035406:CDS |
TGATTCTACTACAAGAAACT+TGG | 0.507418 | 8.2:+52670699 | MS.gene035406:CDS |
CCGCTAGAAGAGTTCCTACC+AGG | 0.507529 | 8.2:-52670372 | None:intergenic |
ATTATGATATTCGAGTCAAT+GGG | 0.519870 | 8.2:+52670740 | MS.gene035406:CDS |
TGATAGTTGATGGAGGACTT+TGG | 0.521104 | 8.2:+52672723 | MS.gene035406:CDS |
CTGGTAGGAACTCTTCTAGC+GGG | 0.525188 | 8.2:+52670373 | MS.gene035406:CDS |
GGAGCCAGTTTACTCATGCC+AGG | 0.525918 | 8.2:-52670790 | None:intergenic |
CGAGTCAATGGGATTGCACC+AGG | 0.526292 | 8.2:+52670751 | MS.gene035406:CDS |
TACTACAAGAAACTTGGCAC+TGG | 0.536669 | 8.2:+52670705 | MS.gene035406:CDS |
TTGGGTTTGAAGGGGATGTG+AGG | 0.552630 | 8.2:+52668951 | MS.gene035406:CDS |
AATTCATGTATCTGCAGCAA+AGG | 0.552785 | 8.2:+52670449 | MS.gene035406:CDS |
TATCTCAAGAAAGGGGCACC+TGG | 0.556489 | 8.2:+52670354 | MS.gene035406:CDS |
TTCTTGTTAATGCTGCTGCT+GGG | 0.557653 | 8.2:+52669035 | MS.gene035406:CDS |
TCCCCTTCAAACCCAACAGC+AGG | 0.558276 | 8.2:-52668944 | None:intergenic |
CGGTAGCTGTGATGGGTCGT+CGG | 0.565048 | 8.2:+52668873 | MS.gene035406:CDS |
TCAACGCAATTGGGGAAACA+TGG | 0.567028 | 8.2:+52668845 | MS.gene035406:CDS |
GCCACGTTATTTGCCAAAGG+AGG | 0.568351 | 8.2:+52672754 | MS.gene035406:CDS |
GGAGCGTCGGTAGCTGTGAT+GGG | 0.573283 | 8.2:+52668866 | MS.gene035406:CDS |
TTGAAATATCAACGCAATTG+GGG | 0.574459 | 8.2:+52668837 | MS.gene035406:CDS |
GGAGTGTCACTTATTGGACC+TGG | 0.583283 | 8.2:-52670769 | None:intergenic |
TCCTGCTGTTGGGTTTGAAG+GGG | 0.588047 | 8.2:+52668943 | MS.gene035406:CDS |
CCTGAAGAAATAGGTAGCAG+AGG | 0.588385 | 8.2:+52670811 | MS.gene035406:CDS |
AGAAACTTGGCACTGGAATG+GGG | 0.594972 | 8.2:+52670712 | MS.gene035406:CDS |
CCTTTGGCAAATAACGTGGC+CGG | 0.597655 | 8.2:-52672751 | None:intergenic |
CCGGCCACGTTATTTGCCAA+AGG | 0.598200 | 8.2:+52672751 | MS.gene035406:CDS |
TCAAGAAAGGGGCACCTGGT+AGG | 0.602664 | 8.2:+52670358 | MS.gene035406:CDS |
AATGCCTCTGTATAAACTTG+GGG | 0.607132 | 8.2:+52670843 | MS.gene035406:CDS |
CCAAGAAGCTCCATAATGCA+AGG | 0.608499 | 8.2:-52670421 | None:intergenic |
TGTGAGGAAGCAGGAAGATG+CGG | 0.618720 | 8.2:+52668967 | MS.gene035406:CDS |
TTCTCCCCAAGTTTATACAG+AGG | 0.622115 | 8.2:-52670847 | None:intergenic |
TGGTAGGAACTCTTCTAGCG+GGG | 0.631175 | 8.2:+52670374 | MS.gene035406:CDS |
GCCTCCTTTGGCAAATAACG+TGG | 0.635341 | 8.2:-52672755 | None:intergenic |
GGTCCAATAAGTGACACTCC+TGG | 0.636505 | 8.2:+52670772 | MS.gene035406:CDS |
GGAGAAATGGGATATTGCAA+TGG | 0.644314 | 8.2:+52670864 | MS.gene035406:CDS |
ATTGGGGAAACATGGAGCGT+CGG | 0.649592 | 8.2:+52668853 | MS.gene035406:CDS |
CCTGGTAGGAACTCTTCTAG+CGG | 0.661737 | 8.2:+52670372 | MS.gene035406:CDS |
GGTAGGAACTCTTCTAGCGG+GGG | 0.665696 | 8.2:+52670375 | MS.gene035406:CDS |
GTGTTGGATATCGATTCTGT+TGG | 0.666144 | 8.2:+52670300 | MS.gene035406:intron |
AAAGTAGCTTTAATAACTGG+CGG | 0.668949 | 8.2:+52668797 | MS.gene035406:CDS |
ACTTAAGTATCTCAAGAAAG+GGG | 0.678718 | 8.2:+52670347 | MS.gene035406:CDS |
GACACTATGATAGTTGATGG+AGG | 0.683950 | 8.2:+52672716 | MS.gene035406:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!!! | ATTTTCATCTTTTTAATTTA+AGG | + | chr8.2:52670499-52670518 | MS.gene035406:intron | 10.0% |
!!! | ATTTTTTATTTATTTGTCTA+TGG | + | chr8.2:52672648-52672667 | MS.gene035406:intron | 10.0% |
!!! | TTTTTAATTTAAGGATTTAA+AGG | + | chr8.2:52670508-52670527 | MS.gene035406:intron | 10.0% |
!! | AAAAAAAAAAGGTAAAGATT+TGG | - | chr8.2:52672297-52672316 | None:intergenic | 15.0% |
!! | AAAAAAAAAGGTAAAGATTT+GGG | - | chr8.2:52672296-52672315 | None:intergenic | 15.0% |
!! | AATTTATATTTGTGGTATAA+GGG | - | chr8.2:52671245-52671264 | None:intergenic | 15.0% |
!! | ACAAGATATTATGTAATTAT+AGG | + | chr8.2:52671174-52671193 | MS.gene035406:intron | 15.0% |
!! | CAAGATATTATGTAATTATA+GGG | + | chr8.2:52671175-52671194 | MS.gene035406:intron | 15.0% |
!! | TAAAACAAATAATGCATAAA+AGG | - | chr8.2:52671210-52671229 | None:intergenic | 15.0% |
!!! | ATATGTAGATTTTAAAATCA+AGG | - | chr8.2:52669791-52669810 | None:intergenic | 15.0% |
!!! | CTAAATTTTAATTATTCAAC+AGG | + | chr8.2:52670669-52670688 | MS.gene035406:intron | 15.0% |
!!! | GCAAAATAATATATTTTCAT+TGG | - | chr8.2:52670572-52670591 | None:intergenic | 15.0% |
!!! | TAAGTATTTCTTTCATTTTA+AGG | - | chr8.2:52669160-52669179 | None:intergenic | 15.0% |
!!! | TAATAAATCTAGAATACATA+AGG | - | chr8.2:52672375-52672394 | None:intergenic | 15.0% |
!!! | TTTATGCATTATTTGTTTTA+TGG | + | chr8.2:52671210-52671229 | MS.gene035406:intron | 15.0% |
!! | AAACATTATAAACACTACAT+AGG | + | chr8.2:52672138-52672157 | MS.gene035406:intron | 20.0% |
!! | ATTTGAATTGCATAAAATCA+TGG | + | chr8.2:52669818-52669837 | MS.gene035406:intron | 20.0% |
!! | CAATTTATATTTGTGGTATA+AGG | - | chr8.2:52671246-52671265 | None:intergenic | 20.0% |
!! | GTTAAAAGTAAGAGTTTAAT+AGG | - | chr8.2:52670648-52670667 | None:intergenic | 20.0% |
!! | TATACCACAAATATAAATTG+TGG | + | chr8.2:52671246-52671265 | MS.gene035406:intron | 20.0% |
!! | TATTGCAAAATTATGCAAAA+TGG | - | chr8.2:52671292-52671311 | None:intergenic | 20.0% |
!! | TTAAATAAAACATACGATCA+GGG | - | chr8.2:52671522-52671541 | None:intergenic | 20.0% |
!! | TTAATTCAATCTTACAAAAC+CGG | + | chr8.2:52672094-52672113 | MS.gene035406:intron | 20.0% |
!! | TTTAAATAAAACATACGATC+AGG | - | chr8.2:52671523-52671542 | None:intergenic | 20.0% |
!!! | AAATTCTACAACTTTTTGAA+TGG | - | chr8.2:52669947-52669966 | None:intergenic | 20.0% |
!!! | AATGATTTTGCAATAATCTA+CGG | - | chr8.2:52670006-52670025 | None:intergenic | 20.0% |
!!! | ATGTAGTGTTTATAATGTTT+TGG | - | chr8.2:52672138-52672157 | None:intergenic | 20.0% |
!!! | ATTTGACTTTTAAGCATTTT+GGG | + | chr8.2:52669002-52669021 | MS.gene035406:CDS | 20.0% |
! | AAAGATGAAAATGAACATCT+AGG | - | chr8.2:52670491-52670510 | None:intergenic | 25.0% |
! | AACATCGTTTAAATTTGTGA+AGG | + | chr8.2:52672677-52672696 | MS.gene035406:intron | 25.0% |
! | AAGTTATGAAAATGTTTCCA+AGG | - | chr8.2:52671006-52671025 | None:intergenic | 25.0% |
! | AATACATTTCTTAGAAATCG+AGG | - | chr8.2:52669295-52669314 | None:intergenic | 25.0% |
! | ACTTACTTAACCGTTTAAAA+AGG | - | chr8.2:52669395-52669414 | None:intergenic | 25.0% |
! | AGATGTATAAACTATGAGAA+GGG | - | chr8.2:52671597-52671616 | None:intergenic | 25.0% |
! | AGTATTCAGTGAGTAAAAAT+GGG | - | chr8.2:52672554-52672573 | None:intergenic | 25.0% |
! | ATGATAGCAATGATGAAATA+AGG | - | chr8.2:52672469-52672488 | None:intergenic | 25.0% |
! | ATTATGATATTCGAGTCAAT+GGG | + | chr8.2:52670740-52670759 | MS.gene035406:CDS | 25.0% |
! | CATGATTAATTAGTAGTGTT+CGG | + | chr8.2:52671061-52671080 | MS.gene035406:intron | 25.0% |
! | GGCTAAACAACTTAAAAAAA+AGG | - | chr8.2:52669374-52669393 | None:intergenic | 25.0% |
! | GGTTAATTAAGTTCAATTGA+TGG | + | chr8.2:52669839-52669858 | MS.gene035406:intron | 25.0% |
! | GTTAATCATGTTTAAATCTG+TGG | - | chr8.2:52669769-52669788 | None:intergenic | 25.0% |
! | TAGTATTCAGTGAGTAAAAA+TGG | - | chr8.2:52672555-52672574 | None:intergenic | 25.0% |
! | TGTAAATTAGATAAGAGTCT+TGG | - | chr8.2:52670199-52670218 | None:intergenic | 25.0% |
! | TGTGAAGGAAAATACATTAA+CGG | + | chr8.2:52672692-52672711 | MS.gene035406:intron | 25.0% |
! | TTATGTAATTATAGGGAAGT+AGG | + | chr8.2:52671182-52671201 | MS.gene035406:intron | 25.0% |
! | TTCAAACCAGAAATCTTAAA+AGG | + | chr8.2:52668773-52668792 | MS.gene035406:CDS | 25.0% |
!! | AACTTTTTGAATGGTTAACA+CGG | - | chr8.2:52669938-52669957 | None:intergenic | 25.0% |
!! | AGAAAAAATCAGTTTTACAC+TGG | + | chr8.2:52670543-52670562 | MS.gene035406:intron | 25.0% |
!! | ATGCTATTTGAACATCAATT+TGG | - | chr8.2:52669976-52669995 | None:intergenic | 25.0% |
!! | CATTTCTCGTATTCAATTTT+AGG | - | chr8.2:52670249-52670268 | None:intergenic | 25.0% |
!! | TATAAGTTTTTATCCAAGCA+GGG | + | chr8.2:52669696-52669715 | MS.gene035406:intron | 25.0% |
!! | TCATCACAAATACTCTATTT+TGG | + | chr8.2:52671925-52671944 | MS.gene035406:intron | 25.0% |
!! | TGATAAAAACAACTTTTGCA+AGG | + | chr8.2:52672418-52672437 | MS.gene035406:intron | 25.0% |
!! | TTATAAGTTTTTATCCAAGC+AGG | + | chr8.2:52669695-52669714 | MS.gene035406:intron | 25.0% |
!! | TTTGAAATATCAACGCAATT+GGG | + | chr8.2:52668836-52668855 | MS.gene035406:CDS | 25.0% |
!!! | AAAGTGAAAAGGTTATTTCT+AGG | - | chr8.2:52672031-52672050 | None:intergenic | 25.0% |
!!! | AGCTTTGGTTAATAGATTTT+GGG | + | chr8.2:52669439-52669458 | MS.gene035406:intron | 25.0% |
!!! | AGTTGTTTAGCCTTTTTAAA+CGG | + | chr8.2:52669382-52669401 | MS.gene035406:intron | 25.0% |
!!! | ATAAGTTTTGTAAGGTTGTT+TGG | + | chr8.2:52669499-52669518 | MS.gene035406:intron | 25.0% |
!!! | CTACTATCATAAGTTTTGTA+AGG | + | chr8.2:52669491-52669510 | MS.gene035406:intron | 25.0% |
!!! | CTGTAAATGTTGTATTTTTG+TGG | + | chr8.2:52670966-52670985 | MS.gene035406:intron | 25.0% |
!!! | GATTTGACTTTTAAGCATTT+TGG | + | chr8.2:52669001-52669020 | MS.gene035406:CDS | 25.0% |
!!! | GCTCTAACAAAATTTTAAGA+AGG | - | chr8.2:52672074-52672093 | None:intergenic | 25.0% |
!!! | TAAGTTTTGTAAGGTTGTTT+GGG | + | chr8.2:52669500-52669519 | MS.gene035406:intron | 25.0% |
!!! | TCATGATTTTTTTGACATGT+TGG | + | chr8.2:52671372-52671391 | MS.gene035406:intron | 25.0% |
!!! | TTATTTCTAGGTGATCTAAA+TGG | - | chr8.2:52672019-52672038 | None:intergenic | 25.0% |
!!! | TTTAAGATTTCTGGTTTGAA+GGG | - | chr8.2:52668773-52668792 | None:intergenic | 25.0% |
!!! | TTTTAAGATTTCTGGTTTGA+AGG | - | chr8.2:52668774-52668793 | None:intergenic | 25.0% |
AAATGCCTCTGTATAAACTT+GGG | + | chr8.2:52670842-52670861 | MS.gene035406:CDS | 30.0% | |
ACAAAGACAGTAAAGTGAAA+AGG | - | chr8.2:52672042-52672061 | None:intergenic | 30.0% | |
ACATGACTTAGTTGAATGAA+GGG | - | chr8.2:52671714-52671733 | None:intergenic | 30.0% | |
ACTTAAGTATCTCAAGAAAG+GGG | + | chr8.2:52670347-52670366 | MS.gene035406:CDS | 30.0% | |
AGCTTACGAAAACAACTTAT+AGG | + | chr8.2:52669594-52669613 | MS.gene035406:intron | 30.0% | |
ATACATAAGGCTTCAAAGTT+TGG | - | chr8.2:52672362-52672381 | None:intergenic | 30.0% | |
ATCAGAATCCTTCTATAATG+TGG | + | chr8.2:52670140-52670159 | MS.gene035406:intron | 30.0% | |
ATTAATTAGTAGTGTTCGGT+TGG | + | chr8.2:52671065-52671084 | MS.gene035406:intron | 30.0% | |
ATTTCTTAGAAATCGAGGTT+GGG | - | chr8.2:52669290-52669309 | None:intergenic | 30.0% | |
CACTTAAGTATCTCAAGAAA+GGG | + | chr8.2:52670346-52670365 | MS.gene035406:CDS | 30.0% | |
GACACCACAATTTATATTTG+TGG | - | chr8.2:52671253-52671272 | None:intergenic | 30.0% | |
GAGATGTATAAACTATGAGA+AGG | - | chr8.2:52671598-52671617 | None:intergenic | 30.0% | |
GATTATGATATTCGAGTCAA+TGG | + | chr8.2:52670739-52670758 | MS.gene035406:CDS | 30.0% | |
TAAATGGTCATATACATGAG+AGG | - | chr8.2:52672003-52672022 | None:intergenic | 30.0% | |
TATATTTGTGGTATAAGGGT+AGG | - | chr8.2:52671241-52671260 | None:intergenic | 30.0% | |
TATTAAAGAGTGGAAGACAA+AGG | - | chr8.2:52671838-52671857 | None:intergenic | 30.0% | |
TGATTCTACTACAAGAAACT+TGG | + | chr8.2:52670699-52670718 | MS.gene035406:CDS | 30.0% | |
TGCAATACGTATTTAAACCT+TGG | + | chr8.2:52671305-52671324 | MS.gene035406:intron | 30.0% | |
TTAATTAGTAGTGTTCGGTT+GGG | + | chr8.2:52671066-52671085 | MS.gene035406:intron | 30.0% | |
TTCATTATTGTTTGCAGTGT+TGG | + | chr8.2:52670284-52670303 | MS.gene035406:intron | 30.0% | |
TTGAAATATCAACGCAATTG+GGG | + | chr8.2:52668837-52668856 | MS.gene035406:CDS | 30.0% | |
TTGAATAAGTGTCTATACGT+GGG | + | chr8.2:52669220-52669239 | MS.gene035406:intron | 30.0% | |
TTGCAATTTCGATGCATTTA+GGG | + | chr8.2:52669314-52669333 | MS.gene035406:intron | 30.0% | |
TTTGAATAAGTGTCTATACG+TGG | + | chr8.2:52669219-52669238 | MS.gene035406:intron | 30.0% | |
TTTGCAATTTCGATGCATTT+AGG | + | chr8.2:52669313-52669332 | MS.gene035406:intron | 30.0% | |
! | GTAGTGAAACTAGAAAGTAT+AGG | + | chr8.2:52671148-52671167 | MS.gene035406:intron | 30.0% |
! | GTTTGAAATATCAACGCAAT+TGG | + | chr8.2:52668835-52668854 | MS.gene035406:CDS | 30.0% |
! | TAAAAACAACTTTTGCAAGG+TGG | + | chr8.2:52672421-52672440 | MS.gene035406:intron | 30.0% |
! | TTGGGAAGATATAAAAGTGT+TGG | - | chr8.2:52672278-52672297 | None:intergenic | 30.0% |
!! | AAAGTAGCTTTAATAACTGG+CGG | + | chr8.2:52668797-52668816 | MS.gene035406:CDS | 30.0% |
!! | AATGAAGGGTATTGCAATAT+GGG | - | chr8.2:52671700-52671719 | None:intergenic | 30.0% |
!! | CAGCTTTGGTTAATAGATTT+TGG | + | chr8.2:52669438-52669457 | MS.gene035406:intron | 30.0% |
!! | GTTATGTTTGTTTCTGTTCA+AGG | + | chr8.2:52671485-52671504 | MS.gene035406:intron | 30.0% |
!! | GTTGTTTTCGTAAGCTATAT+AGG | - | chr8.2:52669590-52669609 | None:intergenic | 30.0% |
!!! | ACTTTGCCTTTTAAGATTTC+TGG | - | chr8.2:52668782-52668801 | None:intergenic | 30.0% |
AATGCCTCTGTATAAACTTG+GGG | + | chr8.2:52670843-52670862 | MS.gene035406:CDS | 35.0% | |
AATTCATGTATCTGCAGCAA+AGG | + | chr8.2:52670449-52670468 | MS.gene035406:CDS | 35.0% | |
ACAAAGGCTCTATAAGAGAA+AGG | - | chr8.2:52671822-52671841 | None:intergenic | 35.0% | |
ACTAACGAAAAACAGCTTTG+AGG | - | chr8.2:52669128-52669147 | None:intergenic | 35.0% | |
AGATCCAGAAATGAACCAAT+TGG | + | chr8.2:52672809-52672828 | MS.gene035406:CDS | 35.0% | |
AGCATTTGAAAGTCTATAGC+AGG | - | chr8.2:52671635-52671654 | None:intergenic | 35.0% | |
AGGATACTAAAGACACTATG+TGG | - | chr8.2:52669354-52669373 | None:intergenic | 35.0% | |
ATGAGTCGAGACAATTAAAG+AGG | - | chr8.2:52671901-52671920 | None:intergenic | 35.0% | |
ATTAGTGCTACCTTGCATTA+TGG | + | chr8.2:52670411-52670430 | MS.gene035406:CDS | 35.0% | |
CAATAGCATAGTTCAATGAG+TGG | - | chr8.2:52669899-52669918 | None:intergenic | 35.0% | |
CATAGTTTATACATCTCACC+TGG | + | chr8.2:52671601-52671620 | MS.gene035406:intron | 35.0% | |
CATTTCTTAGAAATCGAGGT+TGG | - | chr8.2:52669291-52669310 | None:intergenic | 35.0% | |
CTGAATACTAACCATGTAGT+TGG | + | chr8.2:52672565-52672584 | MS.gene035406:intron | 35.0% | |
GAAATGCCTCTGTATAAACT+TGG | + | chr8.2:52670841-52670860 | MS.gene035406:CDS | 35.0% | |
GACATGACTTAGTTGAATGA+AGG | - | chr8.2:52671715-52671734 | None:intergenic | 35.0% | |
GCACTTAAGTATCTCAAGAA+AGG | + | chr8.2:52670345-52670364 | MS.gene035406:CDS | 35.0% | |
GGATACTAAAGACACTATGT+GGG | - | chr8.2:52669353-52669372 | None:intergenic | 35.0% | |
GTATAAACTTGGGGAGAAAT+GGG | + | chr8.2:52670852-52670871 | MS.gene035406:CDS | 35.0% | |
GTTGTTAAAGAGTCTCACAT+CGG | + | chr8.2:52669185-52669204 | MS.gene035406:intron | 35.0% | |
TCCATTTCAAACCAACTACA+TGG | - | chr8.2:52672579-52672598 | None:intergenic | 35.0% | |
TGAATAAGTGTCTATACGTG+GGG | + | chr8.2:52669221-52669240 | MS.gene035406:intron | 35.0% | |
TGCAATTTCGATGCATTTAG+GGG | + | chr8.2:52669315-52669334 | MS.gene035406:intron | 35.0% | |
TGTATAAACTTGGGGAGAAA+TGG | + | chr8.2:52670851-52670870 | MS.gene035406:CDS | 35.0% | |
TTAACCGTCATCGAGTAATA+TGG | - | chr8.2:52671868-52671887 | None:intergenic | 35.0% | |
! | AACACCAATTGGTTCATTTC+TGG | - | chr8.2:52672816-52672835 | None:intergenic | 35.0% |
! | ACAAAGGCTCTTTAAGAGAA+AGG | - | chr8.2:52671791-52671810 | None:intergenic | 35.0% |
! | ACTACTCATCTGAAACACAA+TGG | - | chr8.2:52670172-52670191 | None:intergenic | 35.0% |
! | AGAGAAAGGTTTTCATGAGA+TGG | - | chr8.2:52671777-52671796 | None:intergenic | 35.0% |
! | AGTTCTTCAATCTGCTGTTT+CGG | + | chr8.2:52668901-52668920 | MS.gene035406:CDS | 35.0% |
! | CTAGGGGTATACTATATTGA+AGG | + | chr8.2:52672244-52672263 | MS.gene035406:intron | 35.0% |
! | GAACTGGTGAGTAGTTATTT+TGG | + | chr8.2:52669101-52669120 | MS.gene035406:intron | 35.0% |
! | GGTTTTTGAATTCCATGCTT+GGG | + | chr8.2:52671096-52671115 | MS.gene035406:intron | 35.0% |
! | TGACTTTTAAGCATTTTGGG+AGG | + | chr8.2:52669005-52669024 | MS.gene035406:CDS | 35.0% |
! | TGGTTTTTGAATTCCATGCT+TGG | + | chr8.2:52671095-52671114 | MS.gene035406:intron | 35.0% |
! | TTGGTTAATAGATTTTGGGC+TGG | + | chr8.2:52669443-52669462 | MS.gene035406:intron | 35.0% |
!! | ACCATGTAGTTGGTTTGAAA+TGG | + | chr8.2:52672575-52672594 | MS.gene035406:intron | 35.0% |
!! | CTACTTCTCATTGACTTTGA+AGG | - | chr8.2:52671029-52671048 | None:intergenic | 35.0% |
!! | GAATGAAGGGTATTGCAATA+TGG | - | chr8.2:52671701-52671720 | None:intergenic | 35.0% |
!! | GGCAAAGTAGCTTTAATAAC+TGG | + | chr8.2:52668794-52668813 | MS.gene035406:CDS | 35.0% |
!!! | TAATAGATTTTGGGCTGGTT+TGG | + | chr8.2:52669448-52669467 | MS.gene035406:intron | 35.0% |
!!! | TTGCTTTTTGGAACACCAAT+TGG | - | chr8.2:52672827-52672846 | None:intergenic | 35.0% |
AGGCTTCAAAGTTTGGTATC+AGG | - | chr8.2:52672355-52672374 | None:intergenic | 40.0% | |
AGTATCGCATACACCAAGTA+GGG | - | chr8.2:52670948-52670967 | None:intergenic | 40.0% | |
ATGCTATTGCTAACCACATG+CGG | + | chr8.2:52669910-52669929 | MS.gene035406:intron | 40.0% | |
ATGGATGTCTTTGTAACCCT+AGG | + | chr8.2:52672594-52672613 | MS.gene035406:intron | 40.0% | |
ATTCTTGTTAATGCTGCTGC+TGG | + | chr8.2:52669034-52669053 | MS.gene035406:CDS | 40.0% | |
CAGGGTCATATTAGGTGTAA+TGG | + | chr8.2:52669714-52669733 | MS.gene035406:intron | 40.0% | |
GAATAAGTGTCTATACGTGG+GGG | + | chr8.2:52669222-52669241 | MS.gene035406:intron | 40.0% | |
GGAGAAATGGGATATTGCAA+TGG | + | chr8.2:52670864-52670883 | MS.gene035406:CDS | 40.0% | |
GGAGACACTATGATAGTTGA+TGG | + | chr8.2:52672713-52672732 | MS.gene035406:CDS | 40.0% | |
GGTCATTGCCACATTATAGA+AGG | - | chr8.2:52670151-52670170 | None:intergenic | 40.0% | |
GTAGAACTGAAAAGAAGCCA+AGG | - | chr8.2:52671325-52671344 | None:intergenic | 40.0% | |
TACTACAAGAAACTTGGCAC+TGG | + | chr8.2:52670705-52670724 | MS.gene035406:CDS | 40.0% | |
TATCCAAGCAGGGTCATATT+AGG | + | chr8.2:52669706-52669725 | MS.gene035406:intron | 40.0% | |
TCAGGACATATAGACTGCAA+CGG | - | chr8.2:52672337-52672356 | None:intergenic | 40.0% | |
TGACTCACGTGTAAATGAAG+TGG | + | chr8.2:52669415-52669434 | MS.gene035406:intron | 40.0% | |
TGTAAATGAAGTGGCAGCTT+TGG | + | chr8.2:52669424-52669443 | MS.gene035406:intron | 40.0% | |
TTATCCAAGTGTTCCCTACT+TGG | + | chr8.2:52670932-52670951 | MS.gene035406:intron | 40.0% | |
TTCAATCTTACAAAACCGGC+TGG | + | chr8.2:52672098-52672117 | MS.gene035406:intron | 40.0% | |
TTCATTGTGTTGGGTGTGAA+GGG | - | chr8.2:52672197-52672216 | None:intergenic | 40.0% | |
TTCTCCCCAAGTTTATACAG+AGG | - | chr8.2:52670850-52670869 | None:intergenic | 40.0% | |
TTCTTGTTAATGCTGCTGCT+GGG | + | chr8.2:52669035-52669054 | MS.gene035406:CDS | 40.0% | |
TTGTCTGTGACAAGTCTCAA+AGG | - | chr8.2:52670095-52670114 | None:intergenic | 40.0% | |
TTTGTGGTATAAGGGTAGGA+AGG | - | chr8.2:52671237-52671256 | None:intergenic | 40.0% | |
! | AAACTGGCTCCTGAAGAAAT+AGG | + | chr8.2:52670802-52670821 | MS.gene035406:CDS | 40.0% |
! | AAGAAACTTGGCACTGGAAT+GGG | + | chr8.2:52670711-52670730 | MS.gene035406:CDS | 40.0% |
! | AGTCACTGTTTGAGATACCT+AGG | - | chr8.2:52672614-52672633 | None:intergenic | 40.0% |
! | GAGAAAGGTTTTCACGACAA+AGG | - | chr8.2:52671807-52671826 | None:intergenic | 40.0% |
! | GTCACTGTTTGAGATACCTA+GGG | - | chr8.2:52672613-52672632 | None:intergenic | 40.0% |
!! | AAAGAAGTGCTGATGACATG+TGG | - | chr8.2:52671741-52671760 | None:intergenic | 40.0% |
!! | GACACTATGATAGTTGATGG+AGG | + | chr8.2:52672716-52672735 | MS.gene035406:CDS | 40.0% |
!! | GTGTTGGATATCGATTCTGT+TGG | + | chr8.2:52670300-52670319 | MS.gene035406:intron | 40.0% |
!! | TAACGCAGAGAAGCATTGAA+AGG | - | chr8.2:52671347-52671366 | None:intergenic | 40.0% |
!! | TGATAGTTGATGGAGGACTT+TGG | + | chr8.2:52672723-52672742 | MS.gene035406:CDS | 40.0% |
!! | TTCTGGTTTGAAGGGTGATT+CGG | - | chr8.2:52668765-52668784 | None:intergenic | 40.0% |
ACACCTAATATGACCCTGCT+TGG | - | chr8.2:52669712-52669731 | None:intergenic | 45.0% | |
ACCAAAGCAAAACCCAAGCA+TGG | - | chr8.2:52671111-52671130 | None:intergenic | 45.0% | |
ACCGTCATCGAGTAATATGG+TGG | - | chr8.2:52671865-52671884 | None:intergenic | 45.0% | |
ACTACATAGGCCATGTCTCT+AGG | + | chr8.2:52672151-52672170 | MS.gene035406:intron | 45.0% | |
ATATAGACTGCAACGGGAGT+AGG | - | chr8.2:52672330-52672349 | None:intergenic | 45.0% | |
ATTCCTGCTGTTGGGTTTGA+AGG | + | chr8.2:52668941-52668960 | MS.gene035406:CDS | 45.0% | |
CAGGACATATAGACTGCAAC+GGG | - | chr8.2:52672336-52672355 | None:intergenic | 45.0% | |
CAGTATCGCATACACCAAGT+AGG | - | chr8.2:52670949-52670968 | None:intergenic | 45.0% | |
CCAAGAAGCTCCATAATGCA+AGG | - | chr8.2:52670424-52670443 | None:intergenic | 45.0% | |
CCTGAAGAAATAGGTAGCAG+AGG | + | chr8.2:52670811-52670830 | MS.gene035406:CDS | 45.0% | |
CCTTGCATTATGGAGCTTCT+TGG | + | chr8.2:52670421-52670440 | MS.gene035406:CDS | 45.0% | |
CTAACGAGAGTAGAGTGATG+TGG | - | chr8.2:52670594-52670613 | None:intergenic | 45.0% | |
CTAATACAACCCCACGAAAC+CGG | - | chr8.2:52669266-52669285 | None:intergenic | 45.0% | |
CTATAGCAGGATTACAGACC+AGG | - | chr8.2:52671622-52671641 | None:intergenic | 45.0% | |
CTCTTCTTAGCATCAGATGC+AGG | + | chr8.2:52670892-52670911 | MS.gene035406:CDS | 45.0% | |
CTTCACACCCAACACAATGA+AGG | + | chr8.2:52672196-52672215 | MS.gene035406:intron | 45.0% | |
CTTCATTGTGTTGGGTGTGA+AGG | - | chr8.2:52672198-52672217 | None:intergenic | 45.0% | |
GCCACCATATTACTCGATGA+CGG | + | chr8.2:52671861-52671880 | MS.gene035406:intron | 45.0% | |
TACACCAAGTAGGGAACACT+TGG | - | chr8.2:52670939-52670958 | None:intergenic | 45.0% | |
TCAACGCAATTGGGGAAACA+TGG | + | chr8.2:52668845-52668864 | MS.gene035406:CDS | 45.0% | |
TCACCAGTTCGAAACCCATT+CGG | - | chr8.2:52669091-52669110 | None:intergenic | 45.0% | |
TCATTGTGTTGGGTGTGAAG+GGG | - | chr8.2:52672196-52672215 | None:intergenic | 45.0% | |
TCTTACAAAACCGGCTGGTA+AGG | + | chr8.2:52672103-52672122 | MS.gene035406:intron | 45.0% | |
TGCTATTGCTAACCACATGC+GGG | + | chr8.2:52669911-52669930 | MS.gene035406:intron | 45.0% | |
TGGGTTGCCTTCATTGTGTT+GGG | - | chr8.2:52672206-52672225 | None:intergenic | 45.0% | |
TGGTGACTATCTGAAAGCCT+TGG | + | chr8.2:52670986-52671005 | MS.gene035406:intron | 45.0% | |
TGGTGGCAGCTATTAAAGAG+TGG | - | chr8.2:52671848-52671867 | None:intergenic | 45.0% | |
TTCCTGCTGTTGGGTTTGAA+GGG | + | chr8.2:52668942-52668961 | MS.gene035406:CDS | 45.0% | |
TTGCTGCAATTAGGTGGCTA+GGG | + | chr8.2:52672227-52672246 | MS.gene035406:intron | 45.0% | |
TTTAATAACTGGCGGAGCGT+CGG | + | chr8.2:52668805-52668824 | MS.gene035406:CDS | 45.0% | |
! | AGAAACTTGGCACTGGAATG+GGG | + | chr8.2:52670712-52670731 | MS.gene035406:CDS | 45.0% |
! | CAAGAAACTTGGCACTGGAA+TGG | + | chr8.2:52670710-52670729 | MS.gene035406:CDS | 45.0% |
! | CCTCTGCTACCTATTTCTTC+AGG | - | chr8.2:52670814-52670833 | None:intergenic | 45.0% |
! | GAATTTTCTTGCTGCTGCTG+AGG | + | chr8.2:52669057-52669076 | MS.gene035406:CDS | 45.0% |
! | TCCATGCTTGGGTTTTGCTT+TGG | + | chr8.2:52671107-52671126 | MS.gene035406:intron | 45.0% |
!! | ATGCCAGGAGTGTCACTTAT+TGG | - | chr8.2:52670778-52670797 | None:intergenic | 45.0% |
!! | TTGGTGACAGTCTAGCTTTC+TGG | + | chr8.2:52671126-52671145 | MS.gene035406:intron | 45.0% |
!!! | GATTTTGGGCTGGTTTGGAT+TGG | + | chr8.2:52669453-52669472 | MS.gene035406:intron | 45.0% |
!! | ACAAATAAATAAAAAATTAA+AGG | - | chr8.2:52672645-52672664 | None:intergenic | 5.0% |
!! | GAAAAAAAAAAAAAAAAAAA+AGG | - | chr8.2:52672308-52672327 | None:intergenic | 5.0% |
AAAACCGGCTGGTAAGGTGA+AGG | + | chr8.2:52672109-52672128 | MS.gene035406:intron | 50.0% | |
AGCCACCTAATTGCAGCAAG+TGG | - | chr8.2:52672226-52672245 | None:intergenic | 50.0% | |
ATTGGGGAAACATGGAGCGT+CGG | + | chr8.2:52668853-52668872 | MS.gene035406:CDS | 50.0% | |
CACTCCTGGCATGAGTAAAC+TGG | + | chr8.2:52670786-52670805 | MS.gene035406:CDS | 50.0% | |
CCTGGTAGGAACTCTTCTAG+CGG | + | chr8.2:52670372-52670391 | MS.gene035406:CDS | 50.0% | |
CCTTTGGCAAATAACGTGGC+CGG | - | chr8.2:52672754-52672773 | None:intergenic | 50.0% | |
CGCTTTCGATTCCTGCTGTT+GGG | + | chr8.2:52668933-52668952 | MS.gene035406:CDS | 50.0% | |
CTGAGGATCTTTCGCCGAAT+GGG | + | chr8.2:52669074-52669093 | MS.gene035406:CDS | 50.0% | |
CTGGTAGGAACTCTTCTAGC+GGG | + | chr8.2:52670373-52670392 | MS.gene035406:CDS | 50.0% | |
CTTGCTGCAATTAGGTGGCT+AGG | + | chr8.2:52672226-52672245 | MS.gene035406:intron | 50.0% | |
GCCACCTAATTGCAGCAAGT+GGG | - | chr8.2:52672225-52672244 | None:intergenic | 50.0% | |
GCCACGTTATTTGCCAAAGG+AGG | + | chr8.2:52672754-52672773 | MS.gene035406:CDS | 50.0% | |
GCCTCCTTTGGCAAATAACG+TGG | - | chr8.2:52672758-52672777 | None:intergenic | 50.0% | |
GGTCCAATAAGTGACACTCC+TGG | + | chr8.2:52670772-52670791 | MS.gene035406:CDS | 50.0% | |
GTAACCTTCACCTTACCAGC+CGG | - | chr8.2:52672116-52672135 | None:intergenic | 50.0% | |
TCCTGCTGTTGGGTTTGAAG+GGG | + | chr8.2:52668943-52668962 | MS.gene035406:CDS | 50.0% | |
TCGCTTTCGATTCCTGCTGT+TGG | + | chr8.2:52668932-52668951 | MS.gene035406:CDS | 50.0% | |
TCTCATGCTGCCTAGAGACA+TGG | - | chr8.2:52672164-52672183 | None:intergenic | 50.0% | |
TGCTGCAATTAGGTGGCTAG+GGG | + | chr8.2:52672228-52672247 | MS.gene035406:intron | 50.0% | |
TGGTAGGAACTCTTCTAGCG+GGG | + | chr8.2:52670374-52670393 | MS.gene035406:CDS | 50.0% | |
TGTGAGGAAGCAGGAAGATG+CGG | + | chr8.2:52668967-52668986 | MS.gene035406:CDS | 50.0% | |
TTGGGTTTGAAGGGGATGTG+AGG | + | chr8.2:52668951-52668970 | MS.gene035406:CDS | 50.0% | |
! | ACCCACTTGCTGCAATTAGG+TGG | + | chr8.2:52672221-52672240 | MS.gene035406:intron | 50.0% |
! | GCAACCCACTTGCTGCAATT+AGG | + | chr8.2:52672218-52672237 | MS.gene035406:intron | 50.0% |
! | GTGGGTTGCCTTCATTGTGT+TGG | - | chr8.2:52672207-52672226 | None:intergenic | 50.0% |
! | TTAATAACTGGCGGAGCGTC+GGG | + | chr8.2:52668806-52668825 | MS.gene035406:CDS | 50.0% |
!! | GGAGTGTCACTTATTGGACC+TGG | - | chr8.2:52670772-52670791 | None:intergenic | 50.0% |
!! | TATCTCAAGAAAGGGGCACC+TGG | + | chr8.2:52670354-52670373 | MS.gene035406:CDS | 50.0% |
ACCTGTCTCACTGCCTCCTT+TGG | - | chr8.2:52672770-52672789 | None:intergenic | 55.0% | |
AGTGTTCGGTTGGGACTTGC+TGG | + | chr8.2:52671075-52671094 | MS.gene035406:intron | 55.0% | |
CCGCTAGAAGAGTTCCTACC+AGG | - | chr8.2:52670375-52670394 | None:intergenic | 55.0% | |
CCGGCCACGTTATTTGCCAA+AGG | + | chr8.2:52672751-52672770 | MS.gene035406:CDS | 55.0% | |
CGAGTCAATGGGATTGCACC+AGG | + | chr8.2:52670751-52670770 | MS.gene035406:CDS | 55.0% | |
GCAATCCTCACCTCACATGC+CGG | + | chr8.2:52669244-52669263 | MS.gene035406:intron | 55.0% | |
GCTGAGGATCTTTCGCCGAA+TGG | + | chr8.2:52669073-52669092 | MS.gene035406:CDS | 55.0% | |
GGAGCCAGTTTACTCATGCC+AGG | - | chr8.2:52670793-52670812 | None:intergenic | 55.0% | |
GGTAGGAACTCTTCTAGCGG+GGG | + | chr8.2:52670375-52670394 | MS.gene035406:CDS | 55.0% | |
TCCCCTTCAAACCCAACAGC+AGG | - | chr8.2:52668947-52668966 | None:intergenic | 55.0% | |
TGAAGGGGATGTGAGGAAGC+AGG | + | chr8.2:52668958-52668977 | MS.gene035406:CDS | 55.0% | |
TTGTGTTGGGTGTGAAGGGG+TGG | - | chr8.2:52672193-52672212 | None:intergenic | 55.0% | |
! | TCGCCGAATGGGTTTCGAAC+TGG | + | chr8.2:52669085-52669104 | MS.gene035406:intron | 55.0% |
!! | ACCTCACATGCCGGTTTCGT+GGG | + | chr8.2:52669253-52669272 | MS.gene035406:intron | 55.0% |
!! | TCAAGAAAGGGGCACCTGGT+AGG | + | chr8.2:52670358-52670377 | MS.gene035406:CDS | 55.0% |
CGAAACCGGCATGTGAGGTG+AGG | - | chr8.2:52669252-52669271 | None:intergenic | 60.0% | |
GCCAAAGGAGGCAGTGAGAC+AGG | + | chr8.2:52672766-52672785 | MS.gene035406:CDS | 60.0% | |
GGTTAACACGGTCCCGCATG+TGG | - | chr8.2:52669926-52669945 | None:intergenic | 60.0% | |
!! | CACCTCACATGCCGGTTTCG+TGG | + | chr8.2:52669252-52669271 | MS.gene035406:intron | 60.0% |
!! | CCTCACATGCCGGTTTCGTG+GGG | + | chr8.2:52669254-52669273 | MS.gene035406:intron | 60.0% |
!! | CGGTAGCTGTGATGGGTCGT+CGG | + | chr8.2:52668873-52668892 | MS.gene035406:CDS | 60.0% |
!! | GGAGCGTCGGTAGCTGTGAT+GGG | + | chr8.2:52668866-52668885 | MS.gene035406:CDS | 60.0% |
!! | TGGAGCGTCGGTAGCTGTGA+TGG | + | chr8.2:52668865-52668884 | MS.gene035406:CDS | 60.0% |
CCCCACGAAACCGGCATGTG+AGG | - | chr8.2:52669257-52669276 | None:intergenic | 65.0% | |
!! | ACTGGCGGAGCGTCGGGAAT+TGG | + | chr8.2:52668812-52668831 | MS.gene035406:CDS | 65.0% |
!! | CTGGCGGAGCGTCGGGAATT+GGG | + | chr8.2:52668813-52668832 | MS.gene035406:CDS | 65.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr8.2 | gene | 52668749 | 52672853 | 52668749 | ID=MS.gene035406 |
chr8.2 | mRNA | 52668749 | 52672853 | 52668749 | ID=MS.gene035406.t1;Parent=MS.gene035406 |
chr8.2 | exon | 52668749 | 52669095 | 52668749 | ID=MS.gene035406.t1.exon1;Parent=MS.gene035406.t1 |
chr8.2 | CDS | 52668749 | 52669095 | 52668749 | ID=cds.MS.gene035406.t1;Parent=MS.gene035406.t1 |
chr8.2 | exon | 52669728 | 52669741 | 52669728 | ID=MS.gene035406.t1.exon2;Parent=MS.gene035406.t1 |
chr8.2 | CDS | 52669728 | 52669741 | 52669728 | ID=cds.MS.gene035406.t1;Parent=MS.gene035406.t1 |
chr8.2 | exon | 52670301 | 52670470 | 52670301 | ID=MS.gene035406.t1.exon3;Parent=MS.gene035406.t1 |
chr8.2 | CDS | 52670301 | 52670470 | 52670301 | ID=cds.MS.gene035406.t1;Parent=MS.gene035406.t1 |
chr8.2 | exon | 52670691 | 52670913 | 52670691 | ID=MS.gene035406.t1.exon4;Parent=MS.gene035406.t1 |
chr8.2 | CDS | 52670691 | 52670913 | 52670691 | ID=cds.MS.gene035406.t1;Parent=MS.gene035406.t1 |
chr8.2 | exon | 52672699 | 52672853 | 52672699 | ID=MS.gene035406.t1.exon5;Parent=MS.gene035406.t1 |
chr8.2 | CDS | 52672699 | 52672853 | 52672699 | ID=cds.MS.gene035406.t1;Parent=MS.gene035406.t1 |
Gene Sequence |
Protein sequence |