Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene035574.t1 | XP_003610360.1 | 96.6 | 531 | 17 | 1 | 1 | 531 | 1 | 530 | 6.30E-292 | 1012.7 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene035574.t1 | Q59S63 | 31.4 | 439 | 251 | 7 | 51 | 483 | 145 | 539 | 3.5e-49 | 197.6 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene035574.t1 | G7JGU0 | 96.6 | 531 | 17 | 1 | 1 | 531 | 1 | 530 | 4.6e-292 | 1012.7 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene60517 | MS.gene035574 | PPI |
| MS.gene68085 | MS.gene035574 | PPI |
| MS.gene59369 | MS.gene035574 | PPI |
| MS.gene035574 | MS.gene09988 | PPI |
| MS.gene005792 | MS.gene035574 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene035574.t1 | MTR_4g131270 | 96.610 | 531 | 17 | 1 | 1 | 531 | 1 | 530 | 0.0 | 1056 |
| MS.gene035574.t1 | MTR_4g131220 | 96.422 | 531 | 18 | 1 | 1 | 531 | 1 | 530 | 0.0 | 1055 |
| MS.gene035574.t1 | MTR_4g131200 | 96.221 | 344 | 13 | 0 | 188 | 531 | 18 | 361 | 0.0 | 680 |
| MS.gene035574.t1 | MTR_4g131205 | 98.485 | 132 | 2 | 0 | 32 | 163 | 1 | 132 | 4.40e-90 | 272 |
| MS.gene035574.t1 | MTR_5g074640 | 24.401 | 459 | 253 | 11 | 52 | 477 | 54 | 451 | 7.11e-26 | 111 |
| MS.gene035574.t1 | MTR_5g074620 | 30.968 | 155 | 94 | 3 | 33 | 175 | 36 | 189 | 6.67e-16 | 80.9 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene035574.t1 | AT1G20370 | 57.426 | 505 | 172 | 8 | 16 | 502 | 12 | 491 | 0.0 | 562 |
| MS.gene035574.t1 | AT1G76120 | 59.322 | 472 | 155 | 8 | 32 | 501 | 1 | 437 | 0.0 | 547 |
| MS.gene035574.t1 | AT1G76120 | 56.777 | 391 | 132 | 8 | 32 | 420 | 1 | 356 | 6.47e-143 | 416 |
| MS.gene035574.t1 | AT2G30320 | 37.143 | 140 | 76 | 3 | 52 | 179 | 60 | 199 | 5.05e-19 | 90.5 |
Find 118 sgRNAs with CRISPR-Local
Find 137 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GAAGAAGCTTTGTATGTTTC+TGG | 0.086550 | 8.4:+2161599 | MS.gene035574:CDS |
| CTTACCTTCGTTGTCATAAA+TGG | 0.165687 | 8.4:-2162143 | None:intergenic |
| CATGGGTATCTTTCCACTTC+TGG | 0.173591 | 8.4:-2162787 | None:intergenic |
| TGCTGTTGGTCAGGTTGTTT+CGG | 0.216572 | 8.4:+2161700 | MS.gene035574:CDS |
| GCTGTTGGTCAGGTTGTTTC+GGG | 0.226417 | 8.4:+2161701 | MS.gene035574:CDS |
| TTACTGCGGTGTTGGTTATC+AGG | 0.256135 | 8.4:+2161532 | MS.gene035574:CDS |
| GTGAGGGAAGGTTTGAATTA+AGG | 0.305638 | 8.4:-2161760 | None:intergenic |
| GGTAGACATCTTAACCTTCT+TGG | 0.314194 | 8.4:-2161426 | None:intergenic |
| CCCTCACAGATACGAATCTT+TGG | 0.317752 | 8.4:+2161776 | MS.gene035574:CDS |
| TATTGCTTCCACGGAATATA+AGG | 0.334001 | 8.4:+2162877 | MS.gene035574:CDS |
| CTTTCATTGACACCTCTTCA+TGG | 0.363909 | 8.4:-2162805 | None:intergenic |
| GAGACTGTATTGGCTAGTTT+AGG | 0.366065 | 8.4:+2161908 | MS.gene035574:CDS |
| GAAAGTCCACGATCCTGTTC+AGG | 0.366757 | 8.4:-2161629 | None:intergenic |
| GCAGATCTGGATAGTTTCTA+TGG | 0.367344 | 8.4:-2162934 | None:intergenic |
| TAAAACTGTGGTTTCTGATC+AGG | 0.376101 | 8.4:+2162189 | MS.gene035574:CDS |
| GGTGGATCTGAGAATAATTT+AGG | 0.393164 | 8.4:+2162232 | MS.gene035574:CDS |
| CCGTCAAGGATGCGCAGATC+TGG | 0.394239 | 8.4:-2162947 | None:intergenic |
| TTAGAATTTACTTCTTCAAC+TGG | 0.399023 | 8.4:-2162169 | None:intergenic |
| TTCTTTGCTTACTGCGGTGT+TGG | 0.404138 | 8.4:+2161524 | MS.gene035574:CDS |
| AGGAAGGAACTGTTGGTCTA+TGG | 0.410886 | 8.4:+2162897 | MS.gene035574:CDS |
| AGGAGTTAGTGCTGTTGGTC+AGG | 0.420318 | 8.4:+2161691 | MS.gene035574:CDS |
| CGGTCAGCTAGAACTGATAA+AGG | 0.424782 | 8.4:+2161671 | MS.gene035574:CDS |
| CCAGATCTGCGCATCCTTGA+CGG | 0.424998 | 8.4:+2162947 | MS.gene035574:CDS |
| TTCTGGAGCTGTACCTGAAC+AGG | 0.432347 | 8.4:+2161616 | MS.gene035574:CDS |
| GACTTTCTAAACGCTATGAC+TGG | 0.432785 | 8.4:+2161645 | MS.gene035574:CDS |
| TTATTCTGGTCGTGAAGTTA+TGG | 0.445236 | 8.4:-2162381 | None:intergenic |
| CAGATCTGCGCATCCTTGAC+GGG | 0.449223 | 8.4:+2162948 | MS.gene035574:CDS |
| CCTTCAATAGTCTTTGCACC+AGG | 0.460741 | 8.4:-2161569 | None:intergenic |
| TTACTTCATATAACCAGAAG+TGG | 0.464262 | 8.4:+2162774 | MS.gene035574:CDS |
| TTCAGTAGCCGCTGAAGAGC+CGG | 0.467878 | 8.4:+2161400 | MS.gene035574:CDS |
| CCTGGTGCAAAGACTATTGA+AGG | 0.472541 | 8.4:+2161569 | MS.gene035574:CDS |
| CACAACTGCTGAAGGAAGTA+AGG | 0.474747 | 8.4:+2161472 | MS.gene035574:CDS |
| GATACGGCTGCCAATGGAAG+TGG | 0.482571 | 8.4:+2162286 | MS.gene035574:CDS |
| GTGCCTACTGCACCCGAGGT+TGG | 0.486292 | 8.4:+2162728 | MS.gene035574:CDS |
| AATGAAAGCATATGAGAAAG+AGG | 0.488811 | 8.4:+2162820 | MS.gene035574:CDS |
| TACTGCGGTGTTGGTTATCA+GGG | 0.489262 | 8.4:+2161533 | MS.gene035574:CDS |
| TCATCAGATACGGAAGATGA+TGG | 0.493754 | 8.4:+2162519 | MS.gene035574:CDS |
| GGCCCGAAGAAAATTTCATT+CGG | 0.495388 | 8.4:-2163041 | None:intergenic |
| CAAAGAAAATCGCTACCTTA+CGG | 0.496906 | 8.4:-2161508 | None:intergenic |
| ATTTGTGAAGTGTGAGATTG+TGG | 0.497348 | 8.4:+2162480 | MS.gene035574:CDS |
| ATCTTAACCTTCTTGGCCAC+CGG | 0.498713 | 8.4:-2161419 | None:intergenic |
| GAGAGGAAGAAAAGTGGAAG+GGG | 0.504504 | 8.4:+2161970 | MS.gene035574:CDS |
| CATCAGATACGGAAGATGAT+GGG | 0.507228 | 8.4:+2162520 | MS.gene035574:CDS |
| AGAAAAGTGGAAGGGGTGGT+TGG | 0.512312 | 8.4:+2161977 | MS.gene035574:CDS |
| CACTGTTGTAGTTGAGGGCA+TGG | 0.514451 | 8.4:+2162456 | MS.gene035574:CDS |
| AAAAGTGAACGGAGAGGATA+CGG | 0.517227 | 8.4:+2162270 | MS.gene035574:CDS |
| CTAAACGCTATGACTGGGCT+CGG | 0.517397 | 8.4:+2161651 | MS.gene035574:CDS |
| AGCACCACTGTTGTAGTTGA+GGG | 0.518752 | 8.4:+2162451 | MS.gene035574:CDS |
| ATCTAAATATAATCCAACCT+CGG | 0.518807 | 8.4:-2162741 | None:intergenic |
| TGAAGAGCCGGTGGCCAAGA+AGG | 0.518853 | 8.4:+2161412 | MS.gene035574:CDS |
| CGATTCTATATTGATCCACC+TGG | 0.519143 | 8.4:+2161725 | MS.gene035574:CDS |
| AGGAAGAAAAGTGGAAGGGG+TGG | 0.523374 | 8.4:+2161973 | MS.gene035574:CDS |
| TCTAAATATAATCCAACCTC+GGG | 0.523459 | 8.4:-2162740 | None:intergenic |
| GAGAGAGGAAGAAAAGTGGA+AGG | 0.524603 | 8.4:+2161968 | MS.gene035574:CDS |
| TTCTGAGAGAGGAAGAAAAG+TGG | 0.528778 | 8.4:+2161964 | MS.gene035574:CDS |
| GTTGAGGTTTCTTTAAGCAA+AGG | 0.530209 | 8.4:+2162094 | MS.gene035574:CDS |
| AGCATATGAGAAAGAGGCTG+AGG | 0.533806 | 8.4:+2162826 | MS.gene035574:CDS |
| AGAGAGGAAGAAAAGTGGAA+GGG | 0.535330 | 8.4:+2161969 | MS.gene035574:CDS |
| CACTGTGCCTACTGCACCCG+AGG | 0.538197 | 8.4:+2162724 | MS.gene035574:CDS |
| TTTCATTGACACCTCTTCAT+GGG | 0.538326 | 8.4:-2162804 | None:intergenic |
| CATTTATGACAACGAAGGTA+AGG | 0.539430 | 8.4:+2162144 | MS.gene035574:CDS |
| AGAAGTAAATTCTAAAACTG+TGG | 0.542353 | 8.4:+2162177 | MS.gene035574:CDS |
| CAGGTGGATCAATATAGAAT+CGG | 0.544533 | 8.4:-2161724 | None:intergenic |
| GATAAAGGAGTTAGTGCTGT+TGG | 0.545304 | 8.4:+2161686 | MS.gene035574:CDS |
| GCTTCATGCTTCATCAGATA+CGG | 0.547048 | 8.4:+2162509 | MS.gene035574:CDS |
| CCAAAGATTCGTATCTGTGA+GGG | 0.547978 | 8.4:-2161776 | None:intergenic |
| TATTCCGTGGAAGCAATATG+AGG | 0.551226 | 8.4:-2162872 | None:intergenic |
| TTAAGGCGATCAACGAAGCC+AGG | 0.552578 | 8.4:-2161743 | None:intergenic |
| ATAACAAAACCCACTTCCAT+TGG | 0.552929 | 8.4:-2162296 | None:intergenic |
| TTGTTATGGTGAGAAGGAGA+GGG | 0.555405 | 8.4:+2162312 | MS.gene035574:CDS |
| AAGCACCACTGTTGTAGTTG+AGG | 0.555686 | 8.4:+2162450 | MS.gene035574:CDS |
| ATATCCTCATATTGCTTCCA+CGG | 0.557563 | 8.4:+2162868 | MS.gene035574:CDS |
| TGGAGTTACAAAGGATGTTG+AGG | 0.558784 | 8.4:+2162078 | MS.gene035574:CDS |
| AGTTCCTTCCTTATATTCCG+TGG | 0.559973 | 8.4:-2162885 | None:intergenic |
| TTTCTTCCTCTCTCAGAACA+TGG | 0.560829 | 8.4:-2161959 | None:intergenic |
| AATCCAACCTCGGGTGCAGT+AGG | 0.564016 | 8.4:-2162731 | None:intergenic |
| CTGCGCATCCTTGACGGGGA+AGG | 0.565379 | 8.4:+2162953 | MS.gene035574:CDS |
| GAATATAAGGAAGGAACTGT+TGG | 0.566213 | 8.4:+2162890 | MS.gene035574:CDS |
| ACCACTACTTCTGATGATGA+AGG | 0.569745 | 8.4:+2161446 | MS.gene035574:CDS |
| GCTACTGAAAGTAACGGCGC+TGG | 0.570669 | 8.4:-2161386 | None:intergenic |
| GATGAGGTTGCTGCTACAAA+TGG | 0.573318 | 8.4:+2162211 | MS.gene035574:CDS |
| TCCTTCATCATCAGAAGTAG+TGG | 0.575739 | 8.4:-2161447 | None:intergenic |
| GGAGAGGATACGGCTGCCAA+TGG | 0.576386 | 8.4:+2162280 | MS.gene035574:CDS |
| CTTGGCCACCGGCTCTTCAG+CGG | 0.594829 | 8.4:-2161408 | None:intergenic |
| TCGCGATAGAGAGACTGTAT+TGG | 0.594900 | 8.4:+2161898 | MS.gene035574:CDS |
| TTTGTTATGGTGAGAAGGAG+AGG | 0.595584 | 8.4:+2162311 | MS.gene035574:CDS |
| GCTGGAGATGATGAAGTTGA+CGG | 0.600440 | 8.4:-2161368 | None:intergenic |
| GCTTTCTCGATAAGTGACTC+AGG | 0.601494 | 8.4:-2162574 | None:intergenic |
| GAAGCTGATGATGTTGAGAA+TGG | 0.601511 | 8.4:+2162025 | MS.gene035574:CDS |
| ATCAGATACGGAAGATGATG+GGG | 0.604058 | 8.4:+2162521 | MS.gene035574:CDS |
| TCGTGACACCTTCCCCGTCA+AGG | 0.607550 | 8.4:-2162961 | None:intergenic |
| CTTCAATAGTCTTTGCACCA+GGG | 0.608022 | 8.4:-2161568 | None:intergenic |
| GGTAAGATACAAGCGCCGTA+AGG | 0.609527 | 8.4:+2161493 | MS.gene035574:CDS |
| TCTCTATCGCGATGACAACA+TGG | 0.610304 | 8.4:-2161887 | None:intergenic |
| GAAGATGATGGGGCTTGCCG+TGG | 0.611519 | 8.4:+2162531 | MS.gene035574:CDS |
| TTTGTGAAGTGTGAGATTGT+GGG | 0.614643 | 8.4:+2162481 | MS.gene035574:CDS |
| GAGGTTGCTGCTACAAATGG+TGG | 0.614830 | 8.4:+2162214 | MS.gene035574:CDS |
| ACTTTCTAAACGCTATGACT+GGG | 0.615231 | 8.4:+2161646 | MS.gene035574:CDS |
| GAAGGATGCACAACTGCTGA+AGG | 0.618950 | 8.4:+2161464 | MS.gene035574:CDS |
| ACAATTTCTCATAATTGCCA+CGG | 0.619993 | 8.4:-2162548 | None:intergenic |
| GTGGAAAGATACCCATGAAG+AGG | 0.624853 | 8.4:+2162793 | MS.gene035574:CDS |
| TGTTTGCCATGTTCTGAGAG+AGG | 0.628824 | 8.4:+2161953 | MS.gene035574:CDS |
| TGTGGTTTCTGATCAGGATG+AGG | 0.630641 | 8.4:+2162195 | MS.gene035574:CDS |
| GCTTCCACGGAATATAAGGA+AGG | 0.632416 | 8.4:+2162881 | MS.gene035574:CDS |
| AGTAGCCGCTGAAGAGCCGG+TGG | 0.636551 | 8.4:+2161403 | MS.gene035574:CDS |
| CATGCCCTCAACTACAACAG+TGG | 0.639893 | 8.4:-2162455 | None:intergenic |
| GCTGTACCTGAACAGGATCG+TGG | 0.643569 | 8.4:+2161623 | MS.gene035574:CDS |
| ACCAAAGATTCGTATCTGTG+AGG | 0.646180 | 8.4:-2161777 | None:intergenic |
| AGATCTGCGCATCCTTGACG+GGG | 0.657312 | 8.4:+2162949 | MS.gene035574:CDS |
| ATACGGCTGCCAATGGAAGT+GGG | 0.658422 | 8.4:+2162287 | MS.gene035574:CDS |
| AGATTCGTATCTGTGAGGGA+AGG | 0.664361 | 8.4:-2161772 | None:intergenic |
| GAATAATTTAGGCATTCTCG+AGG | 0.670398 | 8.4:+2162243 | MS.gene035574:CDS |
| AGGCGATCAACGAAGCCAGG+TGG | 0.685026 | 8.4:-2161740 | None:intergenic |
| GAATCCATTTATGACAACGA+AGG | 0.693322 | 8.4:+2162139 | MS.gene035574:CDS |
| TCAGCGGCTACTGAAAGTAA+CGG | 0.694289 | 8.4:-2161392 | None:intergenic |
| GGTTGACTCTGGAGTTACAA+AGG | 0.706513 | 8.4:+2162069 | MS.gene035574:CDS |
| CACGACCAGAATAAAACCCG+AGG | 0.709736 | 8.4:+2162390 | MS.gene035574:CDS |
| CATGGATCAAGAGCAAACAC+AGG | 0.714774 | 8.4:-2161869 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | CATTATTTCAAATATAAAGT+TGG | - | chr8.4:2162640-2162659 | None:intergenic | 15.0% |
| !!! | AATATTTTGAAGTGTTATGT+TGG | + | chr8.4:2162346-2162365 | MS.gene035574:CDS | 20.0% |
| !!! | ATATTTTGAAGTGTTATGTT+GGG | + | chr8.4:2162347-2162366 | MS.gene035574:CDS | 20.0% |
| ! | ATCTAAATATAATCCAACCT+CGG | - | chr8.4:2162744-2162763 | None:intergenic | 25.0% |
| ! | TTAGAATTTACTTCTTCAAC+TGG | - | chr8.4:2162172-2162191 | None:intergenic | 25.0% |
| ! | TTCATCAAACAAAAATGATG+TGG | + | chr8.4:2162048-2162067 | MS.gene035574:CDS | 25.0% |
| !!! | AGAAGTAAATTCTAAAACTG+TGG | + | chr8.4:2162177-2162196 | MS.gene035574:CDS | 25.0% |
| ACAATTTCTCATAATTGCCA+CGG | - | chr8.4:2162551-2162570 | None:intergenic | 30.0% | |
| TCTAAATATAATCCAACCTC+GGG | - | chr8.4:2162743-2162762 | None:intergenic | 30.0% | |
| TTACTTCATATAACCAGAAG+TGG | + | chr8.4:2162774-2162793 | MS.gene035574:CDS | 30.0% | |
| ! | AATGAAAGCATATGAGAAAG+AGG | + | chr8.4:2162820-2162839 | MS.gene035574:CDS | 30.0% |
| ! | ATAATGAAACGTTTTGCAGA+AGG | - | chr8.4:2162418-2162437 | None:intergenic | 30.0% |
| ACTTTCTAAACGCTATGACT+GGG | + | chr8.4:2161646-2161665 | MS.gene035574:CDS | 35.0% | |
| ATAACAAAACCCACTTCCAT+TGG | - | chr8.4:2162299-2162318 | None:intergenic | 35.0% | |
| ATATCCTCATATTGCTTCCA+CGG | + | chr8.4:2162868-2162887 | MS.gene035574:CDS | 35.0% | |
| ATTGTTTCGTCCAAAATGCA+GGG | + | chr8.4:2162691-2162710 | MS.gene035574:intron | 35.0% | |
| ATTTGTGAAGTGTGAGATTG+TGG | + | chr8.4:2162480-2162499 | MS.gene035574:CDS | 35.0% | |
| CAAAGAAAATCGCTACCTTA+CGG | - | chr8.4:2161511-2161530 | None:intergenic | 35.0% | |
| CAGGTGGATCAATATAGAAT+CGG | - | chr8.4:2161727-2161746 | None:intergenic | 35.0% | |
| CATTTATGACAACGAAGGTA+AGG | + | chr8.4:2162144-2162163 | MS.gene035574:CDS | 35.0% | |
| CTTACCTTCGTTGTCATAAA+TGG | - | chr8.4:2162146-2162165 | None:intergenic | 35.0% | |
| GAATAATTTAGGCATTCTCG+AGG | + | chr8.4:2162243-2162262 | MS.gene035574:CDS | 35.0% | |
| GAATATAAGGAAGGAACTGT+TGG | + | chr8.4:2162890-2162909 | MS.gene035574:CDS | 35.0% | |
| GAATCCATTTATGACAACGA+AGG | + | chr8.4:2162139-2162158 | MS.gene035574:CDS | 35.0% | |
| GGTGGATCTGAGAATAATTT+AGG | + | chr8.4:2162232-2162251 | MS.gene035574:CDS | 35.0% | |
| GTTGAGGTTTCTTTAAGCAA+AGG | + | chr8.4:2162094-2162113 | MS.gene035574:CDS | 35.0% | |
| TAAAACTGTGGTTTCTGATC+AGG | + | chr8.4:2162189-2162208 | MS.gene035574:CDS | 35.0% | |
| TATTGCTTCCACGGAATATA+AGG | + | chr8.4:2162877-2162896 | MS.gene035574:CDS | 35.0% | |
| TTATTCTGGTCGTGAAGTTA+TGG | - | chr8.4:2162384-2162403 | None:intergenic | 35.0% | |
| TTTCATTGACACCTCTTCAT+GGG | - | chr8.4:2162807-2162826 | None:intergenic | 35.0% | |
| TTTGTGAAGTGTGAGATTGT+GGG | + | chr8.4:2162481-2162500 | MS.gene035574:CDS | 35.0% | |
| ! | AAAAATGATGTGGTTGACTC+TGG | + | chr8.4:2162058-2162077 | MS.gene035574:CDS | 35.0% |
| ! | GAAGAAGCTTTGTATGTTTC+TGG | + | chr8.4:2161599-2161618 | MS.gene035574:CDS | 35.0% |
| !! | CTAAGAAGTTTTGTGATCGT+AGG | + | chr8.4:2161828-2161847 | MS.gene035574:CDS | 35.0% |
| !!! | AATGGAAGTGGGTTTTGTTA+TGG | + | chr8.4:2162298-2162317 | MS.gene035574:CDS | 35.0% |
| AAAAGTGAACGGAGAGGATA+CGG | + | chr8.4:2162270-2162289 | MS.gene035574:CDS | 40.0% | |
| ACCAAAGATTCGTATCTGTG+AGG | - | chr8.4:2161780-2161799 | None:intergenic | 40.0% | |
| AGAGAGGAAGAAAAGTGGAA+GGG | + | chr8.4:2161969-2161988 | MS.gene035574:CDS | 40.0% | |
| AGTTCCTTCCTTATATTCCG+TGG | - | chr8.4:2162888-2162907 | None:intergenic | 40.0% | |
| ATCAGATACGGAAGATGATG+GGG | + | chr8.4:2162521-2162540 | MS.gene035574:CDS | 40.0% | |
| CATCAGATACGGAAGATGAT+GGG | + | chr8.4:2162520-2162539 | MS.gene035574:CDS | 40.0% | |
| CCAAAGATTCGTATCTGTGA+GGG | - | chr8.4:2161779-2161798 | None:intergenic | 40.0% | |
| CGATTCTATATTGATCCACC+TGG | + | chr8.4:2161725-2161744 | MS.gene035574:CDS | 40.0% | |
| CTCGAGGAAGAAAAAGTGAA+CGG | + | chr8.4:2162259-2162278 | MS.gene035574:CDS | 40.0% | |
| CTTCAATAGTCTTTGCACCA+GGG | - | chr8.4:2161571-2161590 | None:intergenic | 40.0% | |
| CTTTCATTGACACCTCTTCA+TGG | - | chr8.4:2162808-2162827 | None:intergenic | 40.0% | |
| GACTTTCTAAACGCTATGAC+TGG | + | chr8.4:2161645-2161664 | MS.gene035574:CDS | 40.0% | |
| GATAAAGGAGTTAGTGCTGT+TGG | + | chr8.4:2161686-2161705 | MS.gene035574:CDS | 40.0% | |
| GATTGTTTCGTCCAAAATGC+AGG | + | chr8.4:2162690-2162709 | MS.gene035574:intron | 40.0% | |
| GCAGATCTGGATAGTTTCTA+TGG | - | chr8.4:2162937-2162956 | None:intergenic | 40.0% | |
| GCTTCATGCTTCATCAGATA+CGG | + | chr8.4:2162509-2162528 | MS.gene035574:CDS | 40.0% | |
| GGTAGACATCTTAACCTTCT+TGG | - | chr8.4:2161429-2161448 | None:intergenic | 40.0% | |
| GTGAGGGAAGGTTTGAATTA+AGG | - | chr8.4:2161763-2161782 | None:intergenic | 40.0% | |
| TATTCCGTGGAAGCAATATG+AGG | - | chr8.4:2162875-2162894 | None:intergenic | 40.0% | |
| TCATCAGATACGGAAGATGA+TGG | + | chr8.4:2162519-2162538 | MS.gene035574:CDS | 40.0% | |
| TCCTTCATCATCAGAAGTAG+TGG | - | chr8.4:2161450-2161469 | None:intergenic | 40.0% | |
| TGGAGTTACAAAGGATGTTG+AGG | + | chr8.4:2162078-2162097 | MS.gene035574:CDS | 40.0% | |
| TTGTTATGGTGAGAAGGAGA+GGG | + | chr8.4:2162312-2162331 | MS.gene035574:CDS | 40.0% | |
| TTTCTTCCTCTCTCAGAACA+TGG | - | chr8.4:2161962-2161981 | None:intergenic | 40.0% | |
| ! | ACCACTACTTCTGATGATGA+AGG | + | chr8.4:2161446-2161465 | MS.gene035574:CDS | 40.0% |
| ! | ATGCTAACATCCCTGCATTT+TGG | - | chr8.4:2162704-2162723 | None:intergenic | 40.0% |
| ! | GAAGCTGATGATGTTGAGAA+TGG | + | chr8.4:2162025-2162044 | MS.gene035574:CDS | 40.0% |
| ! | GCGATTTTCTTTGCTTACTG+CGG | + | chr8.4:2161518-2161537 | MS.gene035574:CDS | 40.0% |
| ! | TTCTGAGAGAGGAAGAAAAG+TGG | + | chr8.4:2161964-2161983 | MS.gene035574:CDS | 40.0% |
| ! | TTTGTTATGGTGAGAAGGAG+AGG | + | chr8.4:2162311-2162330 | MS.gene035574:CDS | 40.0% |
| !! | AGAAGTTTTGTGATCGTAGG+AGG | + | chr8.4:2161831-2161850 | MS.gene035574:CDS | 40.0% |
| !! | GAGACTGTATTGGCTAGTTT+AGG | + | chr8.4:2161908-2161927 | MS.gene035574:CDS | 40.0% |
| !!! | TGGGTTTTGTTATGGTGAGA+AGG | + | chr8.4:2162306-2162325 | MS.gene035574:CDS | 40.0% |
| AAGCACCACTGTTGTAGTTG+AGG | + | chr8.4:2162450-2162469 | MS.gene035574:CDS | 45.0% | |
| AGATTCGTATCTGTGAGGGA+AGG | - | chr8.4:2161775-2161794 | None:intergenic | 45.0% | |
| AGCACCACTGTTGTAGTTGA+GGG | + | chr8.4:2162451-2162470 | MS.gene035574:CDS | 45.0% | |
| AGCATATGAGAAAGAGGCTG+AGG | + | chr8.4:2162826-2162845 | MS.gene035574:CDS | 45.0% | |
| ATCTTAACCTTCTTGGCCAC+CGG | - | chr8.4:2161422-2161441 | None:intergenic | 45.0% | |
| CACAACTGCTGAAGGAAGTA+AGG | + | chr8.4:2161472-2161491 | MS.gene035574:CDS | 45.0% | |
| CATGGATCAAGAGCAAACAC+AGG | - | chr8.4:2161872-2161891 | None:intergenic | 45.0% | |
| CATGGGTATCTTTCCACTTC+TGG | - | chr8.4:2162790-2162809 | None:intergenic | 45.0% | |
| CCCTCACAGATACGAATCTT+TGG | + | chr8.4:2161776-2161795 | MS.gene035574:CDS | 45.0% | |
| CCTGGTGCAAAGACTATTGA+AGG | + | chr8.4:2161569-2161588 | MS.gene035574:CDS | 45.0% | |
| CCTTCAATAGTCTTTGCACC+AGG | - | chr8.4:2161572-2161591 | None:intergenic | 45.0% | |
| CGGTCAGCTAGAACTGATAA+AGG | + | chr8.4:2161671-2161690 | MS.gene035574:CDS | 45.0% | |
| GAGAGAGGAAGAAAAGTGGA+AGG | + | chr8.4:2161968-2161987 | MS.gene035574:CDS | 45.0% | |
| GAGAGGAAGAAAAGTGGAAG+GGG | + | chr8.4:2161970-2161989 | MS.gene035574:CDS | 45.0% | |
| GATGAGGTTGCTGCTACAAA+TGG | + | chr8.4:2162211-2162230 | MS.gene035574:CDS | 45.0% | |
| GCTGGAGATGATGAAGTTGA+CGG | - | chr8.4:2161371-2161390 | None:intergenic | 45.0% | |
| GCTTCCACGGAATATAAGGA+AGG | + | chr8.4:2162881-2162900 | MS.gene035574:CDS | 45.0% | |
| GCTTTCTCGATAAGTGACTC+AGG | - | chr8.4:2162577-2162596 | None:intergenic | 45.0% | |
| GGAAGAAAAAGTGAACGGAG+AGG | + | chr8.4:2162264-2162283 | MS.gene035574:CDS | 45.0% | |
| GTGGAAAGATACCCATGAAG+AGG | + | chr8.4:2162793-2162812 | MS.gene035574:CDS | 45.0% | |
| TCAGCGGCTACTGAAAGTAA+CGG | - | chr8.4:2161395-2161414 | None:intergenic | 45.0% | |
| TCGCGATAGAGAGACTGTAT+TGG | + | chr8.4:2161898-2161917 | MS.gene035574:CDS | 45.0% | |
| TCTCTATCGCGATGACAACA+TGG | - | chr8.4:2161890-2161909 | None:intergenic | 45.0% | |
| TGTGGTTTCTGATCAGGATG+AGG | + | chr8.4:2162195-2162214 | MS.gene035574:CDS | 45.0% | |
| TTCTTTGCTTACTGCGGTGT+TGG | + | chr8.4:2161524-2161543 | MS.gene035574:CDS | 45.0% | |
| ! | ACGTTTTGCAGAAGGATCCT+CGG | - | chr8.4:2162410-2162429 | None:intergenic | 45.0% |
| ! | AGGAAGGAACTGTTGGTCTA+TGG | + | chr8.4:2162897-2162916 | MS.gene035574:CDS | 45.0% |
| ! | TGCTGTTGGTCAGGTTGTTT+CGG | + | chr8.4:2161700-2161719 | MS.gene035574:CDS | 45.0% |
| !! | GGTTGACTCTGGAGTTACAA+AGG | + | chr8.4:2162069-2162088 | MS.gene035574:CDS | 45.0% |
| !! | TACTGCGGTGTTGGTTATCA+GGG | + | chr8.4:2161533-2161552 | MS.gene035574:CDS | 45.0% |
| !! | TGTTTGCCATGTTCTGAGAG+AGG | + | chr8.4:2161953-2161972 | MS.gene035574:CDS | 45.0% |
| !! | TTACTGCGGTGTTGGTTATC+AGG | + | chr8.4:2161532-2161551 | MS.gene035574:CDS | 45.0% |
| !!! | AGGATCCTCGGGTTTTATTC+TGG | - | chr8.4:2162398-2162417 | None:intergenic | 45.0% |
| AGAAAAGTGGAAGGGGTGGT+TGG | + | chr8.4:2161977-2161996 | MS.gene035574:CDS | 50.0% | |
| AGGAAGAAAAGTGGAAGGGG+TGG | + | chr8.4:2161973-2161992 | MS.gene035574:CDS | 50.0% | |
| ATACGGCTGCCAATGGAAGT+GGG | + | chr8.4:2162287-2162306 | MS.gene035574:CDS | 50.0% | |
| CACGACCAGAATAAAACCCG+AGG | + | chr8.4:2162390-2162409 | MS.gene035574:CDS | 50.0% | |
| CACTGTTGTAGTTGAGGGCA+TGG | + | chr8.4:2162456-2162475 | MS.gene035574:CDS | 50.0% | |
| CAGGGTATGCAGAAAAACCC+TGG | + | chr8.4:2161551-2161570 | MS.gene035574:CDS | 50.0% | |
| CATGCCCTCAACTACAACAG+TGG | - | chr8.4:2162458-2162477 | None:intergenic | 50.0% | |
| CTAAACGCTATGACTGGGCT+CGG | + | chr8.4:2161651-2161670 | MS.gene035574:CDS | 50.0% | |
| GAAAGTCCACGATCCTGTTC+AGG | - | chr8.4:2161632-2161651 | None:intergenic | 50.0% | |
| GAAGGATGCACAACTGCTGA+AGG | + | chr8.4:2161464-2161483 | MS.gene035574:CDS | 50.0% | |
| GAGGTTGCTGCTACAAATGG+TGG | + | chr8.4:2162214-2162233 | MS.gene035574:CDS | 50.0% | |
| TTAAGGCGATCAACGAAGCC+AGG | - | chr8.4:2161746-2161765 | None:intergenic | 50.0% | |
| ! | AGGAGTTAGTGCTGTTGGTC+AGG | + | chr8.4:2161691-2161710 | MS.gene035574:CDS | 50.0% |
| ! | CGTTTTGCAGAAGGATCCTC+GGG | - | chr8.4:2162409-2162428 | None:intergenic | 50.0% |
| ! | GCTGTTGGTCAGGTTGTTTC+GGG | + | chr8.4:2161701-2161720 | MS.gene035574:CDS | 50.0% |
| ! | GGTAAGATACAAGCGCCGTA+AGG | + | chr8.4:2161493-2161512 | MS.gene035574:CDS | 50.0% |
| !! | TTCTGGAGCTGTACCTGAAC+AGG | + | chr8.4:2161616-2161635 | MS.gene035574:CDS | 50.0% |
| AATCCAACCTCGGGTGCAGT+AGG | - | chr8.4:2162734-2162753 | None:intergenic | 55.0% | |
| AGATCTGCGCATCCTTGACG+GGG | + | chr8.4:2162949-2162968 | MS.gene035574:CDS | 55.0% | |
| CAGATCTGCGCATCCTTGAC+GGG | + | chr8.4:2162948-2162967 | MS.gene035574:CDS | 55.0% | |
| CCAGATCTGCGCATCCTTGA+CGG | + | chr8.4:2162947-2162966 | MS.gene035574:CDS | 55.0% | |
| GATACGGCTGCCAATGGAAG+TGG | + | chr8.4:2162286-2162305 | MS.gene035574:CDS | 55.0% | |
| GCTACTGAAAGTAACGGCGC+TGG | - | chr8.4:2161389-2161408 | None:intergenic | 55.0% | |
| GCTGTACCTGAACAGGATCG+TGG | + | chr8.4:2161623-2161642 | MS.gene035574:CDS | 55.0% | |
| TTCAGTAGCCGCTGAAGAGC+CGG | + | chr8.4:2161400-2161419 | MS.gene035574:CDS | 55.0% | |
| AGGCGATCAACGAAGCCAGG+TGG | - | chr8.4:2161743-2161762 | None:intergenic | 60.0% | |
| CCGTCAAGGATGCGCAGATC+TGG | - | chr8.4:2162950-2162969 | None:intergenic | 60.0% | |
| GGAGAGGATACGGCTGCCAA+TGG | + | chr8.4:2162280-2162299 | MS.gene035574:CDS | 60.0% | |
| TCGTGACACCTTCCCCGTCA+AGG | - | chr8.4:2162964-2162983 | None:intergenic | 60.0% | |
| TGAAGAGCCGGTGGCCAAGA+AGG | + | chr8.4:2161412-2161431 | MS.gene035574:CDS | 60.0% | |
| !! | GAAGATGATGGGGCTTGCCG+TGG | + | chr8.4:2162531-2162550 | MS.gene035574:CDS | 60.0% |
| AGTAGCCGCTGAAGAGCCGG+TGG | + | chr8.4:2161403-2161422 | MS.gene035574:CDS | 65.0% | |
| CACTGTGCCTACTGCACCCG+AGG | + | chr8.4:2162724-2162743 | MS.gene035574:CDS | 65.0% | |
| CTGCGCATCCTTGACGGGGA+AGG | + | chr8.4:2162953-2162972 | MS.gene035574:CDS | 65.0% | |
| GTGCCTACTGCACCCGAGGT+TGG | + | chr8.4:2162728-2162747 | MS.gene035574:CDS | 65.0% | |
| !! | CTTGGCCACCGGCTCTTCAG+CGG | - | chr8.4:2161411-2161430 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8.4 | gene | 2161347 | 2163048 | 2161347 | ID=MS.gene035574 |
| chr8.4 | mRNA | 2161347 | 2163048 | 2161347 | ID=MS.gene035574.t1;Parent=MS.gene035574 |
| chr8.4 | exon | 2161347 | 2162605 | 2161347 | ID=MS.gene035574.t1.exon1;Parent=MS.gene035574.t1 |
| chr8.4 | CDS | 2161347 | 2162605 | 2161347 | ID=cds.MS.gene035574.t1;Parent=MS.gene035574.t1 |
| chr8.4 | exon | 2162712 | 2163048 | 2162712 | ID=MS.gene035574.t1.exon2;Parent=MS.gene035574.t1 |
| chr8.4 | CDS | 2162712 | 2163048 | 2162712 | ID=cds.MS.gene035574.t1;Parent=MS.gene035574.t1 |
| Gene Sequence |
| Protein sequence |
