Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene036039.t1 | KEH42477.1 | 96.3 | 349 | 13 | 0 | 56 | 404 | 59 | 407 | 2.50E-200 | 708 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene036039.t1 | P42620 | 41.5 | 335 | 158 | 9 | 77 | 392 | 9 | 324 | 1.9e-58 | 228.0 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene036039.t1 | A0A072VKZ5 | 96.3 | 349 | 13 | 0 | 56 | 404 | 59 | 407 | 1.8e-200 | 708.0 |
TFs/TRs:
Gene ID | Type | Classification |
---|
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|
PPI:
Gene1 | Gene2 | Type |
---|---|---|
MS.gene036039 | MS.gene56426 | PPI |
MS.gene036039 | MS.gene067562 | PPI |
MS.gene036039 | MS.gene006897 | PPI |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene036039.t1 | MTR_1g069575 | 95.577 | 407 | 15 | 1 | 1 | 404 | 1 | 407 | 0.0 | 801 |
MS.gene036039.t1 | MTR_4g084040 | 40.964 | 332 | 173 | 5 | 82 | 396 | 30 | 355 | 1.88e-77 | 244 |
MS.gene036039.t1 | MTR_4g084040 | 41.088 | 331 | 172 | 5 | 83 | 396 | 1 | 325 | 2.82e-77 | 242 |
MS.gene036039.t1 | MTR_4g084040 | 47.345 | 226 | 115 | 1 | 171 | 396 | 38 | 259 | 1.77e-66 | 212 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene036039.t1 | AT5G44000 | 67.614 | 352 | 104 | 3 | 57 | 399 | 44 | 394 | 4.52e-177 | 499 |
MS.gene036039.t1 | AT4G19880 | 39.766 | 342 | 183 | 5 | 71 | 395 | 20 | 355 | 9.13e-74 | 234 |
MS.gene036039.t1 | AT5G45020 | 38.739 | 333 | 177 | 6 | 83 | 396 | 1 | 325 | 6.22e-71 | 226 |
MS.gene036039.t1 | AT5G45020 | 38.739 | 333 | 177 | 6 | 83 | 396 | 1 | 325 | 6.22e-71 | 226 |
MS.gene036039.t1 | AT5G44990 | 39.117 | 317 | 170 | 6 | 96 | 395 | 11 | 321 | 1.22e-68 | 221 |
MS.gene036039.t1 | AT5G44990 | 39.117 | 317 | 170 | 6 | 96 | 395 | 11 | 321 | 1.22e-68 | 221 |
MS.gene036039.t1 | AT4G19880 | 36.957 | 368 | 183 | 6 | 71 | 395 | 20 | 381 | 4.44e-68 | 220 |
MS.gene036039.t1 | AT5G44990 | 42.795 | 229 | 127 | 1 | 171 | 399 | 18 | 242 | 5.79e-59 | 193 |
MS.gene036039.t1 | AT4G19880 | 38.699 | 292 | 154 | 6 | 71 | 341 | 20 | 307 | 4.45e-56 | 187 |
MS.gene036039.t1 | AT5G44990 | 37.175 | 269 | 141 | 7 | 96 | 347 | 11 | 268 | 5.86e-53 | 177 |
Find 150 sgRNAs with CRISPR-Local
Find 174 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
TTGTTTAATTCCGGGTTAAA+TGG | 0.145587 | 1.4:-56314811 | MS.gene036039:CDS |
CCGCTTTATCATATGCTTCT+TGG | 0.182145 | 1.4:+56314383 | None:intergenic |
TGAACCAGTATTTGTTAAAT+AGG | 0.222094 | 1.4:-56313895 | None:intergenic |
AGACTTTGAAGGAAGTTTAT+AGG | 0.256685 | 1.4:-56314933 | MS.gene036039:CDS |
ATAATTCAATTGTTTAATTC+CGG | 0.258778 | 1.4:-56314820 | MS.gene036039:CDS |
CTCATTACATACAACATCTT+TGG | 0.263092 | 1.4:+56314852 | None:intergenic |
ATTACAAGTATCTGCAACTT+TGG | 0.276080 | 1.4:+56314055 | None:intergenic |
TCTTTCACCACCCGAGTTAA+AGG | 0.284660 | 1.4:-56314764 | MS.gene036039:CDS |
TACACACCATTGTTCACATT+TGG | 0.307861 | 1.4:+56314709 | None:intergenic |
TGGACCGGAGAATCGGAATT+TGG | 0.312564 | 1.4:+56315158 | None:intergenic |
ATTGCCTATTTAACAAATAC+TGG | 0.329847 | 1.4:+56313891 | None:intergenic |
TAATTCAATTGTTTAATTCC+GGG | 0.335485 | 1.4:-56314819 | MS.gene036039:CDS |
GAGCTGCCACGTGGAGTTCC+AGG | 0.336140 | 1.4:+56315236 | None:intergenic |
GTTCTGTTACAAAACTTCTC+TGG | 0.344517 | 1.4:-56315305 | MS.gene036039:CDS |
TCTGAAGTTGAAGGCATAAT+TGG | 0.346959 | 1.4:+56313969 | None:intergenic |
GACAAGGTGGTGTGAGGAAG+AGG | 0.351548 | 1.4:+56315440 | None:intergenic |
TCGGGCAATTAGTCCGAGTT+TGG | 0.357269 | 1.4:-56314974 | MS.gene036039:CDS |
TCGGAATTTGGAAGCGGGTC+TGG | 0.361164 | 1.4:+56315170 | None:intergenic |
ATACTCATACAACTTCTTCT+TGG | 0.361565 | 1.4:+56314210 | None:intergenic |
CGCCGGGAATGGACGGGTCG+TGG | 0.375710 | 1.4:-56315023 | MS.gene036039:CDS |
TCCCTGGATTGAGAGGAAAA+AGG | 0.376331 | 1.4:+56314000 | None:intergenic |
AAGATCCAAGTCCGGGTTAT+GGG | 0.387190 | 1.4:+56314783 | None:intergenic |
TTCAAACGAGTTGGCGATAC+GGG | 0.393026 | 1.4:-56314997 | MS.gene036039:CDS |
CTGGGGCCGGTCCCTCCCAC+CGG | 0.396579 | 1.4:-56315286 | MS.gene036039:CDS |
TTACAAGTATCTGCAACTTT+GGG | 0.397228 | 1.4:+56314056 | None:intergenic |
GGTGGGCCCACGGGCATGGC+AGG | 0.401801 | 1.4:+56315106 | None:intergenic |
GTCTGTTTACTACTTTGATT+CGG | 0.402179 | 1.4:-56314267 | MS.gene036039:CDS |
CTACATGCGTCACATTTATC+AGG | 0.404982 | 1.4:-56314173 | MS.gene036039:intron |
AAAGATCCAAGTCCGGGTTA+TGG | 0.407434 | 1.4:+56314782 | None:intergenic |
GGAATATCCGCCGGTGGGGT+CGG | 0.408123 | 1.4:+56315191 | None:intergenic |
TTCTGTTACAAAACTTCTCT+GGG | 0.408913 | 1.4:-56315304 | MS.gene036039:CDS |
TTCTTTGCATGCCTCATGGC+AGG | 0.410450 | 1.4:-56313938 | MS.gene036039:CDS |
TCCCACGACCCGTCCATTCC+CGG | 0.410480 | 1.4:+56315021 | None:intergenic |
CGACAACCACTTTCCGCAAC+CGG | 0.426378 | 1.4:-56315407 | MS.gene036039:CDS |
ACCGGTGTCAGTGGCATCGC+CGG | 0.428200 | 1.4:-56315040 | MS.gene036039:CDS |
ATTTCATGCTCTGAAGTTGA+AGG | 0.430518 | 1.4:+56313960 | None:intergenic |
GAAGACCCGGTGGGAGGGAC+CGG | 0.431442 | 1.4:+56315280 | None:intergenic |
AATTAGTCCGAGTTTGGATA+AGG | 0.434261 | 1.4:-56314968 | MS.gene036039:CDS |
TGTTTAATTCCGGGTTAAAT+GGG | 0.435774 | 1.4:-56314810 | MS.gene036039:CDS |
GTCAGTGGCATCGCCGGGAA+TGG | 0.437517 | 1.4:-56315034 | MS.gene036039:CDS |
CTGGTTCAGTTGATGATGAT+AGG | 0.444961 | 1.4:+56313910 | None:intergenic |
AGAACGGATGAGGGAACTTC+CGG | 0.445710 | 1.4:+56315377 | None:intergenic |
TATCCGCCGGTGGGGTCGGA+GGG | 0.453806 | 1.4:+56315195 | None:intergenic |
CTGAGAAGTGGTGGGTATGA+TGG | 0.455128 | 1.4:-56314910 | MS.gene036039:CDS |
TTCCGGTGAGTCTCCGGTTG+CGG | 0.460175 | 1.4:+56315394 | None:intergenic |
TCACCACCGTCCGCACCGCC+TGG | 0.466420 | 1.4:-56315254 | MS.gene036039:CDS |
TGTTGTCGAGGGACATAGTC+AGG | 0.467332 | 1.4:+56315352 | None:intergenic |
GTTGGCCCATAACCCGGACT+TGG | 0.471548 | 1.4:-56314788 | MS.gene036039:CDS |
ATATCCGCCGGTGGGGTCGG+AGG | 0.471724 | 1.4:+56315194 | None:intergenic |
ACGAGTTGGCGATACGGGTC+GGG | 0.473229 | 1.4:-56314992 | MS.gene036039:CDS |
GTGGCATCGCCGGGAATGGA+CGG | 0.474114 | 1.4:-56315030 | MS.gene036039:CDS |
TCGGCGGTGGACCGGAGAAT+CGG | 0.477661 | 1.4:+56315151 | None:intergenic |
CTCAATCTTATCCTTTAACT+CGG | 0.479397 | 1.4:+56314753 | None:intergenic |
TCAATCTTATCCTTTAACTC+GGG | 0.490673 | 1.4:+56314754 | None:intergenic |
GGGAACTTCCGGTGAGTCTC+CGG | 0.493773 | 1.4:+56315388 | None:intergenic |
TAATTCCGGGTTAAATGGGT+TGG | 0.498858 | 1.4:-56314806 | MS.gene036039:CDS |
ATTCAAACGAGTTGGCGATA+CGG | 0.505943 | 1.4:-56314998 | MS.gene036039:CDS |
TAGTCAGGCGAGAACGGATG+AGG | 0.506765 | 1.4:+56315367 | None:intergenic |
ATGTGAACAATGGTGTGTAT+AGG | 0.507417 | 1.4:-56314705 | MS.gene036039:intron |
GTACGGTGGGCCCACGGGCA+TGG | 0.510535 | 1.4:+56315102 | None:intergenic |
TGGTTCAGTTGATGATGATA+GGG | 0.511787 | 1.4:+56313911 | None:intergenic |
GAATGGTTGCAAGACTTTGA+AGG | 0.514214 | 1.4:-56314944 | MS.gene036039:CDS |
TTACAAAACTTCTCTGGGGC+CGG | 0.517177 | 1.4:-56315299 | MS.gene036039:CDS |
GTTTATAGGCTGAGAAGTGG+TGG | 0.517201 | 1.4:-56314919 | MS.gene036039:CDS |
GAGACCACTCGGCGGTGGAC+CGG | 0.518549 | 1.4:+56315143 | None:intergenic |
CGTTGGCCTGCCATGCCCGT+GGG | 0.519717 | 1.4:-56315112 | MS.gene036039:CDS |
GCCGGGAATGGACGGGTCGT+GGG | 0.520755 | 1.4:-56315022 | MS.gene036039:CDS |
GACGAGAAGACCCGGTGGGA+GGG | 0.521075 | 1.4:+56315275 | None:intergenic |
ACGTTGGCCTGCCATGCCCG+TGG | 0.522921 | 1.4:-56315113 | MS.gene036039:CDS |
ATCTTATCCTTTAACTCGGG+TGG | 0.523502 | 1.4:+56314757 | None:intergenic |
AGTCCGTGCACTCAAAGGCT+TGG | 0.523773 | 1.4:-56315073 | MS.gene036039:CDS |
CTGATAAATGTGACGCATGT+AGG | 0.524638 | 1.4:+56314174 | None:intergenic |
GGTGGTGAAAGATCCAAGTC+CGG | 0.525217 | 1.4:+56314775 | None:intergenic |
TGGGGCCGGTCCCTCCCACC+GGG | 0.526337 | 1.4:-56315285 | MS.gene036039:CDS |
GGTCTGGAATATCCGCCGGT+GGG | 0.527132 | 1.4:+56315186 | None:intergenic |
TGAGAGTACGGTGGGCCCAC+GGG | 0.529134 | 1.4:+56315097 | None:intergenic |
ATGAGAGTACGGTGGGCCCA+CGG | 0.532271 | 1.4:+56315096 | None:intergenic |
GGAATTGTTGTTGTTGTCGA+GGG | 0.533030 | 1.4:+56315341 | None:intergenic |
GCTTCCAAATTCCGATTCTC+CGG | 0.533829 | 1.4:-56315162 | MS.gene036039:CDS |
TTCCGCAACCGGAGACTCAC+CGG | 0.534590 | 1.4:-56315396 | MS.gene036039:CDS |
CGGTTGCGGAAAGTGGTTGT+CGG | 0.536348 | 1.4:+56315408 | None:intergenic |
CTTCCAAGCCTTTGAGTGCA+CGG | 0.538720 | 1.4:+56315070 | None:intergenic |
TGGCATCGCCGGGAATGGAC+GGG | 0.543073 | 1.4:-56315029 | MS.gene036039:CDS |
CCGGTGTCAGTGGCATCGCC+GGG | 0.544222 | 1.4:-56315039 | MS.gene036039:CDS |
CTCATAGTCCGTGCACTCAA+AGG | 0.550431 | 1.4:-56315078 | MS.gene036039:CDS |
AAATGGGTTGGCCCATAACC+CGG | 0.550836 | 1.4:-56314794 | MS.gene036039:CDS |
AACGAGTTGGCGATACGGGT+CGG | 0.551790 | 1.4:-56314993 | MS.gene036039:CDS |
TCAAATTCTCGCTATTTGTG+TGG | 0.552114 | 1.4:-56314316 | MS.gene036039:CDS |
CTCGCTCCCTCCGACCCCAC+CGG | 0.555197 | 1.4:-56315201 | MS.gene036039:CDS |
AGGAATTGTTGTTGTTGTCG+AGG | 0.555266 | 1.4:+56315340 | None:intergenic |
GAGTCTCCGGTTGCGGAAAG+TGG | 0.555872 | 1.4:+56315401 | None:intergenic |
GTGGTGAAAGATCCAAGTCC+GGG | 0.556634 | 1.4:+56314776 | None:intergenic |
AGGTGGAGACCACTCGGCGG+TGG | 0.556945 | 1.4:+56315138 | None:intergenic |
AACAGAACTCAGTAGGGAAG+AGG | 0.559020 | 1.4:+56315320 | None:intergenic |
GAAATTCTTTGCATGCCTCA+TGG | 0.561075 | 1.4:-56313942 | MS.gene036039:CDS |
GGGACATAGTCAGGCGAGAA+CGG | 0.562237 | 1.4:+56315361 | None:intergenic |
CCCGGCGATGCCACTGACAC+CGG | 0.564808 | 1.4:+56315039 | None:intergenic |
GTTCCAGGCGGTGCGGACGG+TGG | 0.565288 | 1.4:+56315251 | None:intergenic |
TCTTTGCATGCCTCATGGCA+GGG | 0.567304 | 1.4:-56313937 | MS.gene036039:CDS |
TTTATAGGCTGAGAAGTGGT+GGG | 0.570077 | 1.4:-56314918 | MS.gene036039:CDS |
GGAGTTCCAGGCGGTGCGGA+CGG | 0.570604 | 1.4:+56315248 | None:intergenic |
GAGTCTTTGTTCCACAACAT+TGG | 0.572372 | 1.4:+56314874 | None:intergenic |
GAGAATCGGAATTTGGAAGC+GGG | 0.577136 | 1.4:+56315165 | None:intergenic |
CTAATGCTCCCTGGATTGAG+AGG | 0.577711 | 1.4:+56313993 | None:intergenic |
GTCTGGAATATCCGCCGGTG+GGG | 0.581278 | 1.4:+56315187 | None:intergenic |
GGAGAATCGGAATTTGGAAG+CGG | 0.584387 | 1.4:+56315164 | None:intergenic |
AGCGGGTCTGGAATATCCGC+CGG | 0.585759 | 1.4:+56315182 | None:intergenic |
CGATGCCACTGACACCGGTA+CGG | 0.586344 | 1.4:+56315044 | None:intergenic |
GGGTCTGGAATATCCGCCGG+TGG | 0.588168 | 1.4:+56315185 | None:intergenic |
CCATTCGCCTTATCCAAACT+CGG | 0.588222 | 1.4:+56314961 | None:intergenic |
CCGAGTTTGGATAAGGCGAA+TGG | 0.588244 | 1.4:-56314961 | MS.gene036039:CDS |
GATCCACTGTGCCAATGTTG+TGG | 0.590586 | 1.4:-56314885 | MS.gene036039:CDS |
TCGTGGGAATTCAAACGAGT+TGG | 0.593252 | 1.4:-56315006 | MS.gene036039:CDS |
ACGTAGAGGTGGAGACCACT+CGG | 0.594306 | 1.4:+56315132 | None:intergenic |
CGAGTTAAAGGATAAGATTG+AGG | 0.599820 | 1.4:-56314752 | MS.gene036039:CDS |
GAAGTTTATAGGCTGAGAAG+TGG | 0.602111 | 1.4:-56314922 | MS.gene036039:CDS |
ATAATTGGTCTAATGCTCCC+TGG | 0.605043 | 1.4:+56313984 | None:intergenic |
AGATTCCGTACCGGTGTCAG+TGG | 0.611699 | 1.4:-56315049 | MS.gene036039:CDS |
GTGCACGGACTATGAGAGTA+CGG | 0.611941 | 1.4:+56315085 | None:intergenic |
ACGCATGTAGGCATGTAGAT+TGG | 0.613504 | 1.4:+56314186 | None:intergenic |
TGACGAGAAGACCCGGTGGG+AGG | 0.614676 | 1.4:+56315274 | None:intergenic |
ATGGCAGGCCAACGTAGAGG+TGG | 0.617427 | 1.4:+56315121 | None:intergenic |
ACGGTGGTGACGAGAAGACC+CGG | 0.617961 | 1.4:+56315267 | None:intergenic |
ATGGGCCAACCCATTTAACC+CGG | 0.621534 | 1.4:+56314801 | None:intergenic |
CCAAGAAGCATATGATAAAG+CGG | 0.622342 | 1.4:-56314383 | MS.gene036039:CDS |
GCTCCCTCCGACCCCACCGG+CGG | 0.625949 | 1.4:-56315198 | MS.gene036039:CDS |
TAAAGGATAAGATTGAGGAA+TGG | 0.626039 | 1.4:-56314747 | MS.gene036039:CDS |
ACAAGGTGGTGTGAGGAAGA+GGG | 0.626050 | 1.4:+56315441 | None:intergenic |
AGTGGTCTCCACCTCTACGT+TGG | 0.627837 | 1.4:-56315129 | MS.gene036039:CDS |
AGTCAGGCGAGAACGGATGA+GGG | 0.643628 | 1.4:+56315368 | None:intergenic |
GGCATGGCAGGCCAACGTAG+AGG | 0.643969 | 1.4:+56315118 | None:intergenic |
AGGCTTGGAAGATTCCGTAC+CGG | 0.644423 | 1.4:-56315058 | MS.gene036039:CDS |
TTGCGGAAAGTGGTTGTCGG+AGG | 0.645779 | 1.4:+56315411 | None:intergenic |
ACGGACTATGAGAGTACGGT+GGG | 0.649294 | 1.4:+56315089 | None:intergenic |
AATGACGACAAGGTGGTGTG+AGG | 0.649943 | 1.4:+56315434 | None:intergenic |
GTTCCACAACATTGGCACAG+TGG | 0.661542 | 1.4:+56314882 | None:intergenic |
TTGTCGGAGGAATGACGACA+AGG | 0.674643 | 1.4:+56315424 | None:intergenic |
ACGTGGAGTTCCAGGCGGTG+CGG | 0.675896 | 1.4:+56315244 | None:intergenic |
TTCTCCGGTCCACCGCCGAG+TGG | 0.686008 | 1.4:-56315147 | MS.gene036039:CDS |
ATATATCCAAATGTGAACAA+TGG | 0.688738 | 1.4:-56314715 | MS.gene036039:CDS |
AGACATCATGAGCTGCCACG+TGG | 0.697920 | 1.4:+56315227 | None:intergenic |
CTGCCACGTGGAGTTCCAGG+CGG | 0.705558 | 1.4:+56315239 | None:intergenic |
GATAGGGATTCCCTGCCATG+AGG | 0.706486 | 1.4:+56313927 | None:intergenic |
CACGGACTATGAGAGTACGG+TGG | 0.713455 | 1.4:+56315088 | None:intergenic |
TGGTGACGAGAAGACCCGGT+GGG | 0.717453 | 1.4:+56315271 | None:intergenic |
GTGGTGACGAGAAGACCCGG+TGG | 0.722463 | 1.4:+56315270 | None:intergenic |
TCTGTTACAAAACTTCTCTG+GGG | 0.722777 | 1.4:-56315303 | MS.gene036039:CDS |
TCGGAGGAATGACGACAAGG+TGG | 0.725756 | 1.4:+56315427 | None:intergenic |
GCACCGCCTGGAACTCCACG+TGG | 0.732654 | 1.4:-56315242 | MS.gene036039:CDS |
TAGAGGTGGAGACCACTCGG+CGG | 0.783474 | 1.4:+56315135 | None:intergenic |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!! | ATAATTCAATTGTTTAATTC+CGG | - | chr1.4:56314538-56314557 | MS.gene036039:intron | 15.0% |
!!! | TTGTAATTTTCAAGAAATTA+TGG | - | chr1.4:56315319-56315338 | MS.gene036039:CDS | 15.0% |
!! | TAATTCAATTGTTTAATTCC+GGG | - | chr1.4:56314539-56314558 | MS.gene036039:intron | 20.0% |
!!! | AATTTTCAAGAAATTATGGA+TGG | - | chr1.4:56315323-56315342 | MS.gene036039:CDS | 20.0% |
!!! | TCATCATTGATTATTGAATT+GGG | - | chr1.4:56314908-56314927 | MS.gene036039:CDS | 20.0% |
! | ATATATCCAAATGTGAACAA+TGG | - | chr1.4:56314643-56314662 | MS.gene036039:intron | 25.0% |
!! | GTCATCATTGATTATTGAAT+TGG | - | chr1.4:56314907-56314926 | MS.gene036039:CDS | 25.0% |
ATACTCATACAACTTCTTCT+TGG | + | chr1.4:56315151-56315170 | None:intergenic | 30.0% | |
ATTACAAGTATCTGCAACTT+TGG | + | chr1.4:56315306-56315325 | None:intergenic | 30.0% | |
CTCAATCTTATCCTTTAACT+CGG | + | chr1.4:56314608-56314627 | None:intergenic | 30.0% | |
CTCATTACATACAACATCTT+TGG | + | chr1.4:56314509-56314528 | None:intergenic | 30.0% | |
GCTTTGCTCAAAAAATGTTT+AGG | - | chr1.4:56315213-56315232 | MS.gene036039:CDS | 30.0% | |
GTCTGTTTACTACTTTGATT+CGG | - | chr1.4:56315091-56315110 | MS.gene036039:CDS | 30.0% | |
TAAAGGATAAGATTGAGGAA+TGG | - | chr1.4:56314611-56314630 | MS.gene036039:intron | 30.0% | |
TCAATCTTATCCTTTAACTC+GGG | + | chr1.4:56314607-56314626 | None:intergenic | 30.0% | |
TGAAAATATTCGAGCATGTT+TGG | + | chr1.4:56314812-56314831 | None:intergenic | 30.0% | |
TGTTTAATTCCGGGTTAAAT+GGG | - | chr1.4:56314548-56314567 | MS.gene036039:intron | 30.0% | |
TTACAAGTATCTGCAACTTT+GGG | + | chr1.4:56315305-56315324 | None:intergenic | 30.0% | |
TTCTGTTACAAAACTTCTCT+GGG | - | chr1.4:56314054-56314073 | MS.gene036039:CDS | 30.0% | |
TTGTTTAATTCCGGGTTAAA+TGG | - | chr1.4:56314547-56314566 | MS.gene036039:intron | 30.0% | |
! | AGACTTTGAAGGAAGTTTAT+AGG | - | chr1.4:56314425-56314444 | MS.gene036039:intron | 30.0% |
! | GTTTTGTACATTAGACAAGT+TGG | - | chr1.4:56315008-56315027 | MS.gene036039:CDS | 30.0% |
! | TTTTGTAACAGAACTCAGTA+GGG | + | chr1.4:56314047-56314066 | None:intergenic | 30.0% |
AATTAGTCCGAGTTTGGATA+AGG | - | chr1.4:56314390-56314409 | MS.gene036039:CDS | 35.0% | |
ATGATGAATGTCTACTCCAA+TGG | + | chr1.4:56314874-56314893 | None:intergenic | 35.0% | |
ATGTGAACAATGGTGTGTAT+AGG | - | chr1.4:56314653-56314672 | MS.gene036039:intron | 35.0% | |
ATTGTTGCAATTTGCATTGC+AGG | - | chr1.4:56314935-56314954 | MS.gene036039:CDS | 35.0% | |
CGAGTTAAAGGATAAGATTG+AGG | - | chr1.4:56314606-56314625 | MS.gene036039:intron | 35.0% | |
CGATGAGTTTGAGAAAATCA+TGG | - | chr1.4:56314714-56314733 | MS.gene036039:CDS | 35.0% | |
GTTCTGTTACAAAACTTCTC+TGG | - | chr1.4:56314053-56314072 | MS.gene036039:CDS | 35.0% | |
TACACACCATTGTTCACATT+TGG | + | chr1.4:56314652-56314671 | None:intergenic | 35.0% | |
TCAAATTCTCGCTATTTGTG+TGG | - | chr1.4:56315042-56315061 | MS.gene036039:CDS | 35.0% | |
TCTGTTACAAAACTTCTCTG+GGG | - | chr1.4:56314055-56314074 | MS.gene036039:CDS | 35.0% | |
! | CCAAGAAGCATATGATAAAG+CGG | - | chr1.4:56314975-56314994 | MS.gene036039:CDS | 35.0% |
! | GAAAATCATGGTGACACTTT+TGG | - | chr1.4:56314726-56314745 | MS.gene036039:CDS | 35.0% |
! | GTTTTGTAACAGAACTCAGT+AGG | + | chr1.4:56314048-56314067 | None:intergenic | 35.0% |
! | TCTGAAGTTGAAGGCATAAT+TGG | + | chr1.4:56315392-56315411 | None:intergenic | 35.0% |
!! | ATTTCATGCTCTGAAGTTGA+AGG | + | chr1.4:56315401-56315420 | None:intergenic | 35.0% |
!! | TGGTTCAGTTGATGATGATA+GGG | + | chr1.4:56315450-56315469 | None:intergenic | 35.0% |
ATCTTATCCTTTAACTCGGG+TGG | + | chr1.4:56314604-56314623 | None:intergenic | 40.0% | |
ATGCTTCCAACTCATACCAT+TGG | - | chr1.4:56314855-56314874 | MS.gene036039:CDS | 40.0% | |
CCGCTTTATCATATGCTTCT+TGG | + | chr1.4:56314978-56314997 | None:intergenic | 40.0% | |
CTACATGCGTCACATTTATC+AGG | - | chr1.4:56315185-56315204 | MS.gene036039:CDS | 40.0% | |
CTGATAAATGTGACGCATGT+AGG | + | chr1.4:56315187-56315206 | None:intergenic | 40.0% | |
GAAATTCTTTGCATGCCTCA+TGG | - | chr1.4:56315416-56315435 | MS.gene036039:CDS | 40.0% | |
GAAGTTTATAGGCTGAGAAG+TGG | - | chr1.4:56314436-56314455 | MS.gene036039:intron | 40.0% | |
GAATGGTTGCAAGACTTTGA+AGG | - | chr1.4:56314414-56314433 | MS.gene036039:intron | 40.0% | |
GAGTCTTTGTTCCACAACAT+TGG | + | chr1.4:56314487-56314506 | None:intergenic | 40.0% | |
TAATTCCGGGTTAAATGGGT+TGG | - | chr1.4:56314552-56314571 | MS.gene036039:intron | 40.0% | |
TCTACTCCAATGGTATGAGT+TGG | + | chr1.4:56314864-56314883 | None:intergenic | 40.0% | |
TTTATAGGCTGAGAAGTGGT+GGG | - | chr1.4:56314440-56314459 | MS.gene036039:intron | 40.0% | |
! | AGGAATTGTTGTTGTTGTCG+AGG | + | chr1.4:56314021-56314040 | None:intergenic | 40.0% |
! | ATAATTGGTCTAATGCTCCC+TGG | + | chr1.4:56315377-56315396 | None:intergenic | 40.0% |
! | ATTCAAACGAGTTGGCGATA+CGG | - | chr1.4:56314360-56314379 | MS.gene036039:CDS | 40.0% |
! | GGAATTGTTGTTGTTGTCGA+GGG | + | chr1.4:56314020-56314039 | None:intergenic | 40.0% |
!! | ATGAGTTGGAAGCATCCAAA+GGG | + | chr1.4:56314850-56314869 | None:intergenic | 40.0% |
!! | CTGGTTCAGTTGATGATGAT+AGG | + | chr1.4:56315451-56315470 | None:intergenic | 40.0% |
!! | TATGAGTTGGAAGCATCCAA+AGG | + | chr1.4:56314851-56314870 | None:intergenic | 40.0% |
AAAGATCCAAGTCCGGGTTA+TGG | + | chr1.4:56314579-56314598 | None:intergenic | 45.0% | |
AACAGAACTCAGTAGGGAAG+AGG | + | chr1.4:56314041-56314060 | None:intergenic | 45.0% | |
AAGATCCAAGTCCGGGTTAT+GGG | + | chr1.4:56314578-56314597 | None:intergenic | 45.0% | |
ACAACAGTTAGACCTCCCTT+TGG | - | chr1.4:56314832-56314851 | MS.gene036039:CDS | 45.0% | |
ACGCATGTAGGCATGTAGAT+TGG | + | chr1.4:56315175-56315194 | None:intergenic | 45.0% | |
CCATTCGCCTTATCCAAACT+CGG | + | chr1.4:56314400-56314419 | None:intergenic | 45.0% | |
CCCTGGATTGAGAGGAAAAA+GGG | + | chr1.4:56315360-56315379 | None:intergenic | 45.0% | |
GAGAATCGGAATTTGGAAGC+GGG | + | chr1.4:56314196-56314215 | None:intergenic | 45.0% | |
GCAATTTGCATTGCAGGTGT+GGG | - | chr1.4:56314941-56314960 | MS.gene036039:CDS | 45.0% | |
GCTTCCAAATTCCGATTCTC+CGG | - | chr1.4:56314196-56314215 | MS.gene036039:CDS | 45.0% | |
GGAGAATCGGAATTTGGAAG+CGG | + | chr1.4:56314197-56314216 | None:intergenic | 45.0% | |
GTTGTATGTGTTTCGTGCCT+TGG | - | chr1.4:56315272-56315291 | MS.gene036039:CDS | 45.0% | |
GTTTATAGGCTGAGAAGTGG+TGG | - | chr1.4:56314439-56314458 | MS.gene036039:intron | 45.0% | |
TCCCTGGATTGAGAGGAAAA+AGG | + | chr1.4:56315361-56315380 | None:intergenic | 45.0% | |
TCGTGGGAATTCAAACGAGT+TGG | - | chr1.4:56314352-56314371 | MS.gene036039:CDS | 45.0% | |
TCTTTCACCACCCGAGTTAA+AGG | - | chr1.4:56314594-56314613 | MS.gene036039:intron | 45.0% | |
TGCAATTTGCATTGCAGGTG+TGG | - | chr1.4:56314940-56314959 | MS.gene036039:CDS | 45.0% | |
! | ACCCTTTTTCCTCTCAATCC+AGG | - | chr1.4:56315356-56315375 | MS.gene036039:CDS | 45.0% |
! | CAACTTTGGGAATCTGTCCA+AGG | + | chr1.4:56315292-56315311 | None:intergenic | 45.0% |
! | CCCTTTTTCCTCTCAATCCA+GGG | - | chr1.4:56315357-56315376 | MS.gene036039:CDS | 45.0% |
! | TTCAAACGAGTTGGCGATAC+GGG | - | chr1.4:56314361-56314380 | MS.gene036039:CDS | 45.0% |
!! | TTACAAAACTTCTCTGGGGC+CGG | - | chr1.4:56314059-56314078 | MS.gene036039:CDS | 45.0% |
AATGACGACAAGGTGGTGTG+AGG | + | chr1.4:56313927-56313946 | None:intergenic | 50.0% | |
ACAAGGTGGTGTGAGGAAGA+GGG | + | chr1.4:56313920-56313939 | None:intergenic | 50.0% | |
AGAACGGATGAGGGAACTTC+CGG | + | chr1.4:56313984-56314003 | None:intergenic | 50.0% | |
AGGCTTGGAAGATTCCGTAC+CGG | - | chr1.4:56314300-56314319 | MS.gene036039:CDS | 50.0% | |
ATGGGCCAACCCATTTAACC+CGG | + | chr1.4:56314560-56314579 | None:intergenic | 50.0% | |
CCGAGTTTGGATAAGGCGAA+TGG | - | chr1.4:56314397-56314416 | MS.gene036039:CDS | 50.0% | |
CTAATGCTCCCTGGATTGAG+AGG | + | chr1.4:56315368-56315387 | None:intergenic | 50.0% | |
CTCATAGTCCGTGCACTCAA+AGG | - | chr1.4:56314280-56314299 | MS.gene036039:CDS | 50.0% | |
CTTCCAAGCCTTTGAGTGCA+CGG | + | chr1.4:56314291-56314310 | None:intergenic | 50.0% | |
GATCCACTGTGCCAATGTTG+TGG | - | chr1.4:56314473-56314492 | MS.gene036039:intron | 50.0% | |
GGTGGTGAAAGATCCAAGTC+CGG | + | chr1.4:56314586-56314605 | None:intergenic | 50.0% | |
GTGGTGAAAGATCCAAGTCC+GGG | + | chr1.4:56314585-56314604 | None:intergenic | 50.0% | |
GTTCCACAACATTGGCACAG+TGG | + | chr1.4:56314479-56314498 | None:intergenic | 50.0% | |
TCGGGCAATTAGTCCGAGTT+TGG | - | chr1.4:56314384-56314403 | MS.gene036039:CDS | 50.0% | |
TCTTTGCATGCCTCATGGCA+GGG | - | chr1.4:56315421-56315440 | MS.gene036039:CDS | 50.0% | |
TGGACCGGAGAATCGGAATT+TGG | + | chr1.4:56314203-56314222 | None:intergenic | 50.0% | |
TGTTGTCGAGGGACATAGTC+AGG | + | chr1.4:56314009-56314028 | None:intergenic | 50.0% | |
TTCTTTGCATGCCTCATGGC+AGG | - | chr1.4:56315420-56315439 | MS.gene036039:CDS | 50.0% | |
TTGTCGGAGGAATGACGACA+AGG | + | chr1.4:56313937-56313956 | None:intergenic | 50.0% | |
! | ACGGACTATGAGAGTACGGT+GGG | + | chr1.4:56314272-56314291 | None:intergenic | 50.0% |
! | GTGCACGGACTATGAGAGTA+CGG | + | chr1.4:56314276-56314295 | None:intergenic | 50.0% |
!! | AAATGGGTTGGCCCATAACC+CGG | - | chr1.4:56314564-56314583 | MS.gene036039:intron | 50.0% |
!! | AGTTGGAAGCATCCAAAGGG+AGG | + | chr1.4:56314847-56314866 | None:intergenic | 50.0% |
!! | CTGAGAAGTGGTGGGTATGA+TGG | - | chr1.4:56314448-56314467 | MS.gene036039:intron | 50.0% |
ACGTAGAGGTGGAGACCACT+CGG | + | chr1.4:56314229-56314248 | None:intergenic | 55.0% | |
AGACATCATGAGCTGCCACG+TGG | + | chr1.4:56314134-56314153 | None:intergenic | 55.0% | |
AGTCAGGCGAGAACGGATGA+GGG | + | chr1.4:56313993-56314012 | None:intergenic | 55.0% | |
AGTCCGTGCACTCAAAGGCT+TGG | - | chr1.4:56314285-56314304 | MS.gene036039:CDS | 55.0% | |
AGTGGTCTCCACCTCTACGT+TGG | - | chr1.4:56314229-56314248 | MS.gene036039:CDS | 55.0% | |
CGACAACCACTTTCCGCAAC+CGG | - | chr1.4:56313951-56313970 | MS.gene036039:CDS | 55.0% | |
CGGTTGCGGAAAGTGGTTGT+CGG | + | chr1.4:56313953-56313972 | None:intergenic | 55.0% | |
GACAAGGTGGTGTGAGGAAG+AGG | + | chr1.4:56313921-56313940 | None:intergenic | 55.0% | |
GATAGGGATTCCCTGCCATG+AGG | + | chr1.4:56315434-56315453 | None:intergenic | 55.0% | |
GGGACATAGTCAGGCGAGAA+CGG | + | chr1.4:56314000-56314019 | None:intergenic | 55.0% | |
TAGTCAGGCGAGAACGGATG+AGG | + | chr1.4:56313994-56314013 | None:intergenic | 55.0% | |
TCGGAATTTGGAAGCGGGTC+TGG | + | chr1.4:56314191-56314210 | None:intergenic | 55.0% | |
TCGGAGGAATGACGACAAGG+TGG | + | chr1.4:56313934-56313953 | None:intergenic | 55.0% | |
TTGCGGAAAGTGGTTGTCGG+AGG | + | chr1.4:56313950-56313969 | None:intergenic | 55.0% | |
! | AACGAGTTGGCGATACGGGT+CGG | - | chr1.4:56314365-56314384 | MS.gene036039:CDS | 55.0% |
! | AGATTCCGTACCGGTGTCAG+TGG | - | chr1.4:56314309-56314328 | MS.gene036039:CDS | 55.0% |
! | CACGGACTATGAGAGTACGG+TGG | + | chr1.4:56314273-56314292 | None:intergenic | 55.0% |
ATGGCAGGCCAACGTAGAGG+TGG | + | chr1.4:56314240-56314259 | None:intergenic | 60.0% | |
CGATGCCACTGACACCGGTA+CGG | + | chr1.4:56314317-56314336 | None:intergenic | 60.0% | |
GAGTCTCCGGTTGCGGAAAG+TGG | + | chr1.4:56313960-56313979 | None:intergenic | 60.0% | |
GGGAACTTCCGGTGAGTCTC+CGG | + | chr1.4:56313973-56313992 | None:intergenic | 60.0% | |
GTTGGCCCATAACCCGGACT+TGG | - | chr1.4:56314570-56314589 | MS.gene036039:intron | 60.0% | |
TAGAGGTGGAGACCACTCGG+CGG | + | chr1.4:56314226-56314245 | None:intergenic | 60.0% | |
TTCCGCAACCGGAGACTCAC+CGG | - | chr1.4:56313962-56313981 | MS.gene036039:CDS | 60.0% | |
TTCCGGTGAGTCTCCGGTTG+CGG | + | chr1.4:56313967-56313986 | None:intergenic | 60.0% | |
! | ACGAGTTGGCGATACGGGTC+GGG | - | chr1.4:56314366-56314385 | MS.gene036039:CDS | 60.0% |
! | ACGGTGGTGACGAGAAGACC+CGG | + | chr1.4:56314094-56314113 | None:intergenic | 60.0% |
! | AGCGGGTCTGGAATATCCGC+CGG | + | chr1.4:56314179-56314198 | None:intergenic | 60.0% |
! | ATGAGAGTACGGTGGGCCCA+CGG | + | chr1.4:56314265-56314284 | None:intergenic | 60.0% |
! | GGTCTGGAATATCCGCCGGT+GGG | + | chr1.4:56314175-56314194 | None:intergenic | 60.0% |
! | GTCTGGAATATCCGCCGGTG+GGG | + | chr1.4:56314174-56314193 | None:intergenic | 60.0% |
! | TGGTGACGAGAAGACCCGGT+GGG | + | chr1.4:56314090-56314109 | None:intergenic | 60.0% |
ACGTGGAGTTCCAGGCGGTG+CGG | + | chr1.4:56314117-56314136 | None:intergenic | 65.0% | |
CTGCCACGTGGAGTTCCAGG+CGG | + | chr1.4:56314122-56314141 | None:intergenic | 65.0% | |
GACGAGAAGACCCGGTGGGA+GGG | + | chr1.4:56314086-56314105 | None:intergenic | 65.0% | |
GAGCTGCCACGTGGAGTTCC+AGG | + | chr1.4:56314125-56314144 | None:intergenic | 65.0% | |
GGAATATCCGCCGGTGGGGT+CGG | + | chr1.4:56314170-56314189 | None:intergenic | 65.0% | |
GGCATGGCAGGCCAACGTAG+AGG | + | chr1.4:56314243-56314262 | None:intergenic | 65.0% | |
GTCAGTGGCATCGCCGGGAA+TGG | - | chr1.4:56314324-56314343 | MS.gene036039:CDS | 65.0% | |
GTGGCATCGCCGGGAATGGA+CGG | - | chr1.4:56314328-56314347 | MS.gene036039:CDS | 65.0% | |
TCCCACGACCCGTCCATTCC+CGG | + | chr1.4:56314340-56314359 | None:intergenic | 65.0% | |
TCGGCGGTGGACCGGAGAAT+CGG | + | chr1.4:56314210-56314229 | None:intergenic | 65.0% | |
TGACGAGAAGACCCGGTGGG+AGG | + | chr1.4:56314087-56314106 | None:intergenic | 65.0% | |
TGGCATCGCCGGGAATGGAC+GGG | - | chr1.4:56314329-56314348 | MS.gene036039:CDS | 65.0% | |
! | ACCGGTGTCAGTGGCATCGC+CGG | - | chr1.4:56314318-56314337 | MS.gene036039:CDS | 65.0% |
! | GGGTCTGGAATATCCGCCGG+TGG | + | chr1.4:56314176-56314195 | None:intergenic | 65.0% |
! | GTGGTGACGAGAAGACCCGG+TGG | + | chr1.4:56314091-56314110 | None:intergenic | 65.0% |
! | TGAGAGTACGGTGGGCCCAC+GGG | + | chr1.4:56314264-56314283 | None:intergenic | 65.0% |
AGGTGGAGACCACTCGGCGG+TGG | + | chr1.4:56314223-56314242 | None:intergenic | 70.0% | |
ATATCCGCCGGTGGGGTCGG+AGG | + | chr1.4:56314167-56314186 | None:intergenic | 70.0% | |
CCCGGCGATGCCACTGACAC+CGG | + | chr1.4:56314322-56314341 | None:intergenic | 70.0% | |
GAAGACCCGGTGGGAGGGAC+CGG | + | chr1.4:56314081-56314100 | None:intergenic | 70.0% | |
GAGACCACTCGGCGGTGGAC+CGG | + | chr1.4:56314218-56314237 | None:intergenic | 70.0% | |
GCACCGCCTGGAACTCCACG+TGG | - | chr1.4:56314116-56314135 | MS.gene036039:intron | 70.0% | |
GCCGGGAATGGACGGGTCGT+GGG | - | chr1.4:56314336-56314355 | MS.gene036039:CDS | 70.0% | |
GGAGTTCCAGGCGGTGCGGA+CGG | + | chr1.4:56314113-56314132 | None:intergenic | 70.0% | |
TATCCGCCGGTGGGGTCGGA+GGG | + | chr1.4:56314166-56314185 | None:intergenic | 70.0% | |
TTCTCCGGTCCACCGCCGAG+TGG | - | chr1.4:56314211-56314230 | MS.gene036039:CDS | 70.0% | |
! | ACGTTGGCCTGCCATGCCCG+TGG | - | chr1.4:56314245-56314264 | MS.gene036039:CDS | 70.0% |
! | CCGGTGTCAGTGGCATCGCC+GGG | - | chr1.4:56314319-56314338 | MS.gene036039:CDS | 70.0% |
! | CGTTGGCCTGCCATGCCCGT+GGG | - | chr1.4:56314246-56314265 | MS.gene036039:CDS | 70.0% |
CGCCGGGAATGGACGGGTCG+TGG | - | chr1.4:56314335-56314354 | MS.gene036039:CDS | 75.0% | |
CTCGCTCCCTCCGACCCCAC+CGG | - | chr1.4:56314157-56314176 | MS.gene036039:intron | 75.0% | |
GTACGGTGGGCCCACGGGCA+TGG | + | chr1.4:56314259-56314278 | None:intergenic | 75.0% | |
GTTCCAGGCGGTGCGGACGG+TGG | + | chr1.4:56314110-56314129 | None:intergenic | 75.0% | |
TCACCACCGTCCGCACCGCC+TGG | - | chr1.4:56314104-56314123 | MS.gene036039:intron | 75.0% | |
! | CTGGGGCCGGTCCCTCCCAC+CGG | - | chr1.4:56314072-56314091 | MS.gene036039:intron | 80.0% |
! | GCTCCCTCCGACCCCACCGG+CGG | - | chr1.4:56314160-56314179 | MS.gene036039:intron | 80.0% |
! | GGTGGGCCCACGGGCATGGC+AGG | + | chr1.4:56314255-56314274 | None:intergenic | 80.0% |
! | TGGGGCCGGTCCCTCCCACC+GGG | - | chr1.4:56314073-56314092 | MS.gene036039:intron | 80.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr1.4 | gene | 56313896 | 56315484 | 56313896 | ID=MS.gene036039 |
chr1.4 | mRNA | 56313896 | 56315484 | 56313896 | ID=MS.gene036039.t1;Parent=MS.gene036039 |
chr1.4 | exon | 56314706 | 56315484 | 56314706 | ID=MS.gene036039.t1.exon1;Parent=MS.gene036039.t1 |
chr1.4 | CDS | 56314706 | 56315484 | 56314706 | ID=cds.MS.gene036039.t1;Parent=MS.gene036039.t1 |
chr1.4 | exon | 56314174 | 56314423 | 56314174 | ID=MS.gene036039.t1.exon2;Parent=MS.gene036039.t1 |
chr1.4 | CDS | 56314174 | 56314423 | 56314174 | ID=cds.MS.gene036039.t1;Parent=MS.gene036039.t1 |
chr1.4 | exon | 56313896 | 56314081 | 56313896 | ID=MS.gene036039.t1.exon3;Parent=MS.gene036039.t1 |
chr1.4 | CDS | 56313896 | 56314081 | 56313896 | ID=cds.MS.gene036039.t1;Parent=MS.gene036039.t1 |
Gene Sequence |
Protein sequence |