AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene036039


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene036039.t1 MTR_1g069575 95.577 407 15 1 1 404 1 407 0.0 801
MS.gene036039.t1 MTR_4g084040 40.964 332 173 5 82 396 30 355 1.88e-77 244
MS.gene036039.t1 MTR_4g084040 41.088 331 172 5 83 396 1 325 2.82e-77 242
MS.gene036039.t1 MTR_4g084040 47.345 226 115 1 171 396 38 259 1.77e-66 212
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene036039.t1 AT5G44000 67.614 352 104 3 57 399 44 394 4.52e-177 499
MS.gene036039.t1 AT4G19880 39.766 342 183 5 71 395 20 355 9.13e-74 234
MS.gene036039.t1 AT5G45020 38.739 333 177 6 83 396 1 325 6.22e-71 226
MS.gene036039.t1 AT5G45020 38.739 333 177 6 83 396 1 325 6.22e-71 226
MS.gene036039.t1 AT5G44990 39.117 317 170 6 96 395 11 321 1.22e-68 221
MS.gene036039.t1 AT5G44990 39.117 317 170 6 96 395 11 321 1.22e-68 221
MS.gene036039.t1 AT4G19880 36.957 368 183 6 71 395 20 381 4.44e-68 220
MS.gene036039.t1 AT5G44990 42.795 229 127 1 171 399 18 242 5.79e-59 193
MS.gene036039.t1 AT4G19880 38.699 292 154 6 71 341 20 307 4.45e-56 187
MS.gene036039.t1 AT5G44990 37.175 269 141 7 96 347 11 268 5.86e-53 177

Find 150 sgRNAs with CRISPR-Local

Find 174 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTGTTTAATTCCGGGTTAAA+TGG 0.145587 1.4:-56314811 MS.gene036039:CDS
CCGCTTTATCATATGCTTCT+TGG 0.182145 1.4:+56314383 None:intergenic
TGAACCAGTATTTGTTAAAT+AGG 0.222094 1.4:-56313895 None:intergenic
AGACTTTGAAGGAAGTTTAT+AGG 0.256685 1.4:-56314933 MS.gene036039:CDS
ATAATTCAATTGTTTAATTC+CGG 0.258778 1.4:-56314820 MS.gene036039:CDS
CTCATTACATACAACATCTT+TGG 0.263092 1.4:+56314852 None:intergenic
ATTACAAGTATCTGCAACTT+TGG 0.276080 1.4:+56314055 None:intergenic
TCTTTCACCACCCGAGTTAA+AGG 0.284660 1.4:-56314764 MS.gene036039:CDS
TACACACCATTGTTCACATT+TGG 0.307861 1.4:+56314709 None:intergenic
TGGACCGGAGAATCGGAATT+TGG 0.312564 1.4:+56315158 None:intergenic
ATTGCCTATTTAACAAATAC+TGG 0.329847 1.4:+56313891 None:intergenic
TAATTCAATTGTTTAATTCC+GGG 0.335485 1.4:-56314819 MS.gene036039:CDS
GAGCTGCCACGTGGAGTTCC+AGG 0.336140 1.4:+56315236 None:intergenic
GTTCTGTTACAAAACTTCTC+TGG 0.344517 1.4:-56315305 MS.gene036039:CDS
TCTGAAGTTGAAGGCATAAT+TGG 0.346959 1.4:+56313969 None:intergenic
GACAAGGTGGTGTGAGGAAG+AGG 0.351548 1.4:+56315440 None:intergenic
TCGGGCAATTAGTCCGAGTT+TGG 0.357269 1.4:-56314974 MS.gene036039:CDS
TCGGAATTTGGAAGCGGGTC+TGG 0.361164 1.4:+56315170 None:intergenic
ATACTCATACAACTTCTTCT+TGG 0.361565 1.4:+56314210 None:intergenic
CGCCGGGAATGGACGGGTCG+TGG 0.375710 1.4:-56315023 MS.gene036039:CDS
TCCCTGGATTGAGAGGAAAA+AGG 0.376331 1.4:+56314000 None:intergenic
AAGATCCAAGTCCGGGTTAT+GGG 0.387190 1.4:+56314783 None:intergenic
TTCAAACGAGTTGGCGATAC+GGG 0.393026 1.4:-56314997 MS.gene036039:CDS
CTGGGGCCGGTCCCTCCCAC+CGG 0.396579 1.4:-56315286 MS.gene036039:CDS
TTACAAGTATCTGCAACTTT+GGG 0.397228 1.4:+56314056 None:intergenic
GGTGGGCCCACGGGCATGGC+AGG 0.401801 1.4:+56315106 None:intergenic
GTCTGTTTACTACTTTGATT+CGG 0.402179 1.4:-56314267 MS.gene036039:CDS
CTACATGCGTCACATTTATC+AGG 0.404982 1.4:-56314173 MS.gene036039:intron
AAAGATCCAAGTCCGGGTTA+TGG 0.407434 1.4:+56314782 None:intergenic
GGAATATCCGCCGGTGGGGT+CGG 0.408123 1.4:+56315191 None:intergenic
TTCTGTTACAAAACTTCTCT+GGG 0.408913 1.4:-56315304 MS.gene036039:CDS
TTCTTTGCATGCCTCATGGC+AGG 0.410450 1.4:-56313938 MS.gene036039:CDS
TCCCACGACCCGTCCATTCC+CGG 0.410480 1.4:+56315021 None:intergenic
CGACAACCACTTTCCGCAAC+CGG 0.426378 1.4:-56315407 MS.gene036039:CDS
ACCGGTGTCAGTGGCATCGC+CGG 0.428200 1.4:-56315040 MS.gene036039:CDS
ATTTCATGCTCTGAAGTTGA+AGG 0.430518 1.4:+56313960 None:intergenic
GAAGACCCGGTGGGAGGGAC+CGG 0.431442 1.4:+56315280 None:intergenic
AATTAGTCCGAGTTTGGATA+AGG 0.434261 1.4:-56314968 MS.gene036039:CDS
TGTTTAATTCCGGGTTAAAT+GGG 0.435774 1.4:-56314810 MS.gene036039:CDS
GTCAGTGGCATCGCCGGGAA+TGG 0.437517 1.4:-56315034 MS.gene036039:CDS
CTGGTTCAGTTGATGATGAT+AGG 0.444961 1.4:+56313910 None:intergenic
AGAACGGATGAGGGAACTTC+CGG 0.445710 1.4:+56315377 None:intergenic
TATCCGCCGGTGGGGTCGGA+GGG 0.453806 1.4:+56315195 None:intergenic
CTGAGAAGTGGTGGGTATGA+TGG 0.455128 1.4:-56314910 MS.gene036039:CDS
TTCCGGTGAGTCTCCGGTTG+CGG 0.460175 1.4:+56315394 None:intergenic
TCACCACCGTCCGCACCGCC+TGG 0.466420 1.4:-56315254 MS.gene036039:CDS
TGTTGTCGAGGGACATAGTC+AGG 0.467332 1.4:+56315352 None:intergenic
GTTGGCCCATAACCCGGACT+TGG 0.471548 1.4:-56314788 MS.gene036039:CDS
ATATCCGCCGGTGGGGTCGG+AGG 0.471724 1.4:+56315194 None:intergenic
ACGAGTTGGCGATACGGGTC+GGG 0.473229 1.4:-56314992 MS.gene036039:CDS
GTGGCATCGCCGGGAATGGA+CGG 0.474114 1.4:-56315030 MS.gene036039:CDS
TCGGCGGTGGACCGGAGAAT+CGG 0.477661 1.4:+56315151 None:intergenic
CTCAATCTTATCCTTTAACT+CGG 0.479397 1.4:+56314753 None:intergenic
TCAATCTTATCCTTTAACTC+GGG 0.490673 1.4:+56314754 None:intergenic
GGGAACTTCCGGTGAGTCTC+CGG 0.493773 1.4:+56315388 None:intergenic
TAATTCCGGGTTAAATGGGT+TGG 0.498858 1.4:-56314806 MS.gene036039:CDS
ATTCAAACGAGTTGGCGATA+CGG 0.505943 1.4:-56314998 MS.gene036039:CDS
TAGTCAGGCGAGAACGGATG+AGG 0.506765 1.4:+56315367 None:intergenic
ATGTGAACAATGGTGTGTAT+AGG 0.507417 1.4:-56314705 MS.gene036039:intron
GTACGGTGGGCCCACGGGCA+TGG 0.510535 1.4:+56315102 None:intergenic
TGGTTCAGTTGATGATGATA+GGG 0.511787 1.4:+56313911 None:intergenic
GAATGGTTGCAAGACTTTGA+AGG 0.514214 1.4:-56314944 MS.gene036039:CDS
TTACAAAACTTCTCTGGGGC+CGG 0.517177 1.4:-56315299 MS.gene036039:CDS
GTTTATAGGCTGAGAAGTGG+TGG 0.517201 1.4:-56314919 MS.gene036039:CDS
GAGACCACTCGGCGGTGGAC+CGG 0.518549 1.4:+56315143 None:intergenic
CGTTGGCCTGCCATGCCCGT+GGG 0.519717 1.4:-56315112 MS.gene036039:CDS
GCCGGGAATGGACGGGTCGT+GGG 0.520755 1.4:-56315022 MS.gene036039:CDS
GACGAGAAGACCCGGTGGGA+GGG 0.521075 1.4:+56315275 None:intergenic
ACGTTGGCCTGCCATGCCCG+TGG 0.522921 1.4:-56315113 MS.gene036039:CDS
ATCTTATCCTTTAACTCGGG+TGG 0.523502 1.4:+56314757 None:intergenic
AGTCCGTGCACTCAAAGGCT+TGG 0.523773 1.4:-56315073 MS.gene036039:CDS
CTGATAAATGTGACGCATGT+AGG 0.524638 1.4:+56314174 None:intergenic
GGTGGTGAAAGATCCAAGTC+CGG 0.525217 1.4:+56314775 None:intergenic
TGGGGCCGGTCCCTCCCACC+GGG 0.526337 1.4:-56315285 MS.gene036039:CDS
GGTCTGGAATATCCGCCGGT+GGG 0.527132 1.4:+56315186 None:intergenic
TGAGAGTACGGTGGGCCCAC+GGG 0.529134 1.4:+56315097 None:intergenic
ATGAGAGTACGGTGGGCCCA+CGG 0.532271 1.4:+56315096 None:intergenic
GGAATTGTTGTTGTTGTCGA+GGG 0.533030 1.4:+56315341 None:intergenic
GCTTCCAAATTCCGATTCTC+CGG 0.533829 1.4:-56315162 MS.gene036039:CDS
TTCCGCAACCGGAGACTCAC+CGG 0.534590 1.4:-56315396 MS.gene036039:CDS
CGGTTGCGGAAAGTGGTTGT+CGG 0.536348 1.4:+56315408 None:intergenic
CTTCCAAGCCTTTGAGTGCA+CGG 0.538720 1.4:+56315070 None:intergenic
TGGCATCGCCGGGAATGGAC+GGG 0.543073 1.4:-56315029 MS.gene036039:CDS
CCGGTGTCAGTGGCATCGCC+GGG 0.544222 1.4:-56315039 MS.gene036039:CDS
CTCATAGTCCGTGCACTCAA+AGG 0.550431 1.4:-56315078 MS.gene036039:CDS
AAATGGGTTGGCCCATAACC+CGG 0.550836 1.4:-56314794 MS.gene036039:CDS
AACGAGTTGGCGATACGGGT+CGG 0.551790 1.4:-56314993 MS.gene036039:CDS
TCAAATTCTCGCTATTTGTG+TGG 0.552114 1.4:-56314316 MS.gene036039:CDS
CTCGCTCCCTCCGACCCCAC+CGG 0.555197 1.4:-56315201 MS.gene036039:CDS
AGGAATTGTTGTTGTTGTCG+AGG 0.555266 1.4:+56315340 None:intergenic
GAGTCTCCGGTTGCGGAAAG+TGG 0.555872 1.4:+56315401 None:intergenic
GTGGTGAAAGATCCAAGTCC+GGG 0.556634 1.4:+56314776 None:intergenic
AGGTGGAGACCACTCGGCGG+TGG 0.556945 1.4:+56315138 None:intergenic
AACAGAACTCAGTAGGGAAG+AGG 0.559020 1.4:+56315320 None:intergenic
GAAATTCTTTGCATGCCTCA+TGG 0.561075 1.4:-56313942 MS.gene036039:CDS
GGGACATAGTCAGGCGAGAA+CGG 0.562237 1.4:+56315361 None:intergenic
CCCGGCGATGCCACTGACAC+CGG 0.564808 1.4:+56315039 None:intergenic
GTTCCAGGCGGTGCGGACGG+TGG 0.565288 1.4:+56315251 None:intergenic
TCTTTGCATGCCTCATGGCA+GGG 0.567304 1.4:-56313937 MS.gene036039:CDS
TTTATAGGCTGAGAAGTGGT+GGG 0.570077 1.4:-56314918 MS.gene036039:CDS
GGAGTTCCAGGCGGTGCGGA+CGG 0.570604 1.4:+56315248 None:intergenic
GAGTCTTTGTTCCACAACAT+TGG 0.572372 1.4:+56314874 None:intergenic
GAGAATCGGAATTTGGAAGC+GGG 0.577136 1.4:+56315165 None:intergenic
CTAATGCTCCCTGGATTGAG+AGG 0.577711 1.4:+56313993 None:intergenic
GTCTGGAATATCCGCCGGTG+GGG 0.581278 1.4:+56315187 None:intergenic
GGAGAATCGGAATTTGGAAG+CGG 0.584387 1.4:+56315164 None:intergenic
AGCGGGTCTGGAATATCCGC+CGG 0.585759 1.4:+56315182 None:intergenic
CGATGCCACTGACACCGGTA+CGG 0.586344 1.4:+56315044 None:intergenic
GGGTCTGGAATATCCGCCGG+TGG 0.588168 1.4:+56315185 None:intergenic
CCATTCGCCTTATCCAAACT+CGG 0.588222 1.4:+56314961 None:intergenic
CCGAGTTTGGATAAGGCGAA+TGG 0.588244 1.4:-56314961 MS.gene036039:CDS
GATCCACTGTGCCAATGTTG+TGG 0.590586 1.4:-56314885 MS.gene036039:CDS
TCGTGGGAATTCAAACGAGT+TGG 0.593252 1.4:-56315006 MS.gene036039:CDS
ACGTAGAGGTGGAGACCACT+CGG 0.594306 1.4:+56315132 None:intergenic
CGAGTTAAAGGATAAGATTG+AGG 0.599820 1.4:-56314752 MS.gene036039:CDS
GAAGTTTATAGGCTGAGAAG+TGG 0.602111 1.4:-56314922 MS.gene036039:CDS
ATAATTGGTCTAATGCTCCC+TGG 0.605043 1.4:+56313984 None:intergenic
AGATTCCGTACCGGTGTCAG+TGG 0.611699 1.4:-56315049 MS.gene036039:CDS
GTGCACGGACTATGAGAGTA+CGG 0.611941 1.4:+56315085 None:intergenic
ACGCATGTAGGCATGTAGAT+TGG 0.613504 1.4:+56314186 None:intergenic
TGACGAGAAGACCCGGTGGG+AGG 0.614676 1.4:+56315274 None:intergenic
ATGGCAGGCCAACGTAGAGG+TGG 0.617427 1.4:+56315121 None:intergenic
ACGGTGGTGACGAGAAGACC+CGG 0.617961 1.4:+56315267 None:intergenic
ATGGGCCAACCCATTTAACC+CGG 0.621534 1.4:+56314801 None:intergenic
CCAAGAAGCATATGATAAAG+CGG 0.622342 1.4:-56314383 MS.gene036039:CDS
GCTCCCTCCGACCCCACCGG+CGG 0.625949 1.4:-56315198 MS.gene036039:CDS
TAAAGGATAAGATTGAGGAA+TGG 0.626039 1.4:-56314747 MS.gene036039:CDS
ACAAGGTGGTGTGAGGAAGA+GGG 0.626050 1.4:+56315441 None:intergenic
AGTGGTCTCCACCTCTACGT+TGG 0.627837 1.4:-56315129 MS.gene036039:CDS
AGTCAGGCGAGAACGGATGA+GGG 0.643628 1.4:+56315368 None:intergenic
GGCATGGCAGGCCAACGTAG+AGG 0.643969 1.4:+56315118 None:intergenic
AGGCTTGGAAGATTCCGTAC+CGG 0.644423 1.4:-56315058 MS.gene036039:CDS
TTGCGGAAAGTGGTTGTCGG+AGG 0.645779 1.4:+56315411 None:intergenic
ACGGACTATGAGAGTACGGT+GGG 0.649294 1.4:+56315089 None:intergenic
AATGACGACAAGGTGGTGTG+AGG 0.649943 1.4:+56315434 None:intergenic
GTTCCACAACATTGGCACAG+TGG 0.661542 1.4:+56314882 None:intergenic
TTGTCGGAGGAATGACGACA+AGG 0.674643 1.4:+56315424 None:intergenic
ACGTGGAGTTCCAGGCGGTG+CGG 0.675896 1.4:+56315244 None:intergenic
TTCTCCGGTCCACCGCCGAG+TGG 0.686008 1.4:-56315147 MS.gene036039:CDS
ATATATCCAAATGTGAACAA+TGG 0.688738 1.4:-56314715 MS.gene036039:CDS
AGACATCATGAGCTGCCACG+TGG 0.697920 1.4:+56315227 None:intergenic
CTGCCACGTGGAGTTCCAGG+CGG 0.705558 1.4:+56315239 None:intergenic
GATAGGGATTCCCTGCCATG+AGG 0.706486 1.4:+56313927 None:intergenic
CACGGACTATGAGAGTACGG+TGG 0.713455 1.4:+56315088 None:intergenic
TGGTGACGAGAAGACCCGGT+GGG 0.717453 1.4:+56315271 None:intergenic
GTGGTGACGAGAAGACCCGG+TGG 0.722463 1.4:+56315270 None:intergenic
TCTGTTACAAAACTTCTCTG+GGG 0.722777 1.4:-56315303 MS.gene036039:CDS
TCGGAGGAATGACGACAAGG+TGG 0.725756 1.4:+56315427 None:intergenic
GCACCGCCTGGAACTCCACG+TGG 0.732654 1.4:-56315242 MS.gene036039:CDS
TAGAGGTGGAGACCACTCGG+CGG 0.783474 1.4:+56315135 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATAATTCAATTGTTTAATTC+CGG - chr1.4:56314538-56314557 MS.gene036039:intron 15.0%
!!! TTGTAATTTTCAAGAAATTA+TGG - chr1.4:56315319-56315338 MS.gene036039:CDS 15.0%
!! TAATTCAATTGTTTAATTCC+GGG - chr1.4:56314539-56314558 MS.gene036039:intron 20.0%
!!! AATTTTCAAGAAATTATGGA+TGG - chr1.4:56315323-56315342 MS.gene036039:CDS 20.0%
!!! TCATCATTGATTATTGAATT+GGG - chr1.4:56314908-56314927 MS.gene036039:CDS 20.0%
! ATATATCCAAATGTGAACAA+TGG - chr1.4:56314643-56314662 MS.gene036039:intron 25.0%
!! GTCATCATTGATTATTGAAT+TGG - chr1.4:56314907-56314926 MS.gene036039:CDS 25.0%
ATACTCATACAACTTCTTCT+TGG + chr1.4:56315151-56315170 None:intergenic 30.0%
ATTACAAGTATCTGCAACTT+TGG + chr1.4:56315306-56315325 None:intergenic 30.0%
CTCAATCTTATCCTTTAACT+CGG + chr1.4:56314608-56314627 None:intergenic 30.0%
CTCATTACATACAACATCTT+TGG + chr1.4:56314509-56314528 None:intergenic 30.0%
GCTTTGCTCAAAAAATGTTT+AGG - chr1.4:56315213-56315232 MS.gene036039:CDS 30.0%
GTCTGTTTACTACTTTGATT+CGG - chr1.4:56315091-56315110 MS.gene036039:CDS 30.0%
TAAAGGATAAGATTGAGGAA+TGG - chr1.4:56314611-56314630 MS.gene036039:intron 30.0%
TCAATCTTATCCTTTAACTC+GGG + chr1.4:56314607-56314626 None:intergenic 30.0%
TGAAAATATTCGAGCATGTT+TGG + chr1.4:56314812-56314831 None:intergenic 30.0%
TGTTTAATTCCGGGTTAAAT+GGG - chr1.4:56314548-56314567 MS.gene036039:intron 30.0%
TTACAAGTATCTGCAACTTT+GGG + chr1.4:56315305-56315324 None:intergenic 30.0%
TTCTGTTACAAAACTTCTCT+GGG - chr1.4:56314054-56314073 MS.gene036039:CDS 30.0%
TTGTTTAATTCCGGGTTAAA+TGG - chr1.4:56314547-56314566 MS.gene036039:intron 30.0%
! AGACTTTGAAGGAAGTTTAT+AGG - chr1.4:56314425-56314444 MS.gene036039:intron 30.0%
! GTTTTGTACATTAGACAAGT+TGG - chr1.4:56315008-56315027 MS.gene036039:CDS 30.0%
! TTTTGTAACAGAACTCAGTA+GGG + chr1.4:56314047-56314066 None:intergenic 30.0%
AATTAGTCCGAGTTTGGATA+AGG - chr1.4:56314390-56314409 MS.gene036039:CDS 35.0%
ATGATGAATGTCTACTCCAA+TGG + chr1.4:56314874-56314893 None:intergenic 35.0%
ATGTGAACAATGGTGTGTAT+AGG - chr1.4:56314653-56314672 MS.gene036039:intron 35.0%
ATTGTTGCAATTTGCATTGC+AGG - chr1.4:56314935-56314954 MS.gene036039:CDS 35.0%
CGAGTTAAAGGATAAGATTG+AGG - chr1.4:56314606-56314625 MS.gene036039:intron 35.0%
CGATGAGTTTGAGAAAATCA+TGG - chr1.4:56314714-56314733 MS.gene036039:CDS 35.0%
GTTCTGTTACAAAACTTCTC+TGG - chr1.4:56314053-56314072 MS.gene036039:CDS 35.0%
TACACACCATTGTTCACATT+TGG + chr1.4:56314652-56314671 None:intergenic 35.0%
TCAAATTCTCGCTATTTGTG+TGG - chr1.4:56315042-56315061 MS.gene036039:CDS 35.0%
TCTGTTACAAAACTTCTCTG+GGG - chr1.4:56314055-56314074 MS.gene036039:CDS 35.0%
! CCAAGAAGCATATGATAAAG+CGG - chr1.4:56314975-56314994 MS.gene036039:CDS 35.0%
! GAAAATCATGGTGACACTTT+TGG - chr1.4:56314726-56314745 MS.gene036039:CDS 35.0%
! GTTTTGTAACAGAACTCAGT+AGG + chr1.4:56314048-56314067 None:intergenic 35.0%
! TCTGAAGTTGAAGGCATAAT+TGG + chr1.4:56315392-56315411 None:intergenic 35.0%
!! ATTTCATGCTCTGAAGTTGA+AGG + chr1.4:56315401-56315420 None:intergenic 35.0%
!! TGGTTCAGTTGATGATGATA+GGG + chr1.4:56315450-56315469 None:intergenic 35.0%
ATCTTATCCTTTAACTCGGG+TGG + chr1.4:56314604-56314623 None:intergenic 40.0%
ATGCTTCCAACTCATACCAT+TGG - chr1.4:56314855-56314874 MS.gene036039:CDS 40.0%
CCGCTTTATCATATGCTTCT+TGG + chr1.4:56314978-56314997 None:intergenic 40.0%
CTACATGCGTCACATTTATC+AGG - chr1.4:56315185-56315204 MS.gene036039:CDS 40.0%
CTGATAAATGTGACGCATGT+AGG + chr1.4:56315187-56315206 None:intergenic 40.0%
GAAATTCTTTGCATGCCTCA+TGG - chr1.4:56315416-56315435 MS.gene036039:CDS 40.0%
GAAGTTTATAGGCTGAGAAG+TGG - chr1.4:56314436-56314455 MS.gene036039:intron 40.0%
GAATGGTTGCAAGACTTTGA+AGG - chr1.4:56314414-56314433 MS.gene036039:intron 40.0%
GAGTCTTTGTTCCACAACAT+TGG + chr1.4:56314487-56314506 None:intergenic 40.0%
TAATTCCGGGTTAAATGGGT+TGG - chr1.4:56314552-56314571 MS.gene036039:intron 40.0%
TCTACTCCAATGGTATGAGT+TGG + chr1.4:56314864-56314883 None:intergenic 40.0%
TTTATAGGCTGAGAAGTGGT+GGG - chr1.4:56314440-56314459 MS.gene036039:intron 40.0%
! AGGAATTGTTGTTGTTGTCG+AGG + chr1.4:56314021-56314040 None:intergenic 40.0%
! ATAATTGGTCTAATGCTCCC+TGG + chr1.4:56315377-56315396 None:intergenic 40.0%
! ATTCAAACGAGTTGGCGATA+CGG - chr1.4:56314360-56314379 MS.gene036039:CDS 40.0%
! GGAATTGTTGTTGTTGTCGA+GGG + chr1.4:56314020-56314039 None:intergenic 40.0%
!! ATGAGTTGGAAGCATCCAAA+GGG + chr1.4:56314850-56314869 None:intergenic 40.0%
!! CTGGTTCAGTTGATGATGAT+AGG + chr1.4:56315451-56315470 None:intergenic 40.0%
!! TATGAGTTGGAAGCATCCAA+AGG + chr1.4:56314851-56314870 None:intergenic 40.0%
AAAGATCCAAGTCCGGGTTA+TGG + chr1.4:56314579-56314598 None:intergenic 45.0%
AACAGAACTCAGTAGGGAAG+AGG + chr1.4:56314041-56314060 None:intergenic 45.0%
AAGATCCAAGTCCGGGTTAT+GGG + chr1.4:56314578-56314597 None:intergenic 45.0%
ACAACAGTTAGACCTCCCTT+TGG - chr1.4:56314832-56314851 MS.gene036039:CDS 45.0%
ACGCATGTAGGCATGTAGAT+TGG + chr1.4:56315175-56315194 None:intergenic 45.0%
CCATTCGCCTTATCCAAACT+CGG + chr1.4:56314400-56314419 None:intergenic 45.0%
CCCTGGATTGAGAGGAAAAA+GGG + chr1.4:56315360-56315379 None:intergenic 45.0%
GAGAATCGGAATTTGGAAGC+GGG + chr1.4:56314196-56314215 None:intergenic 45.0%
GCAATTTGCATTGCAGGTGT+GGG - chr1.4:56314941-56314960 MS.gene036039:CDS 45.0%
GCTTCCAAATTCCGATTCTC+CGG - chr1.4:56314196-56314215 MS.gene036039:CDS 45.0%
GGAGAATCGGAATTTGGAAG+CGG + chr1.4:56314197-56314216 None:intergenic 45.0%
GTTGTATGTGTTTCGTGCCT+TGG - chr1.4:56315272-56315291 MS.gene036039:CDS 45.0%
GTTTATAGGCTGAGAAGTGG+TGG - chr1.4:56314439-56314458 MS.gene036039:intron 45.0%
TCCCTGGATTGAGAGGAAAA+AGG + chr1.4:56315361-56315380 None:intergenic 45.0%
TCGTGGGAATTCAAACGAGT+TGG - chr1.4:56314352-56314371 MS.gene036039:CDS 45.0%
TCTTTCACCACCCGAGTTAA+AGG - chr1.4:56314594-56314613 MS.gene036039:intron 45.0%
TGCAATTTGCATTGCAGGTG+TGG - chr1.4:56314940-56314959 MS.gene036039:CDS 45.0%
! ACCCTTTTTCCTCTCAATCC+AGG - chr1.4:56315356-56315375 MS.gene036039:CDS 45.0%
! CAACTTTGGGAATCTGTCCA+AGG + chr1.4:56315292-56315311 None:intergenic 45.0%
! CCCTTTTTCCTCTCAATCCA+GGG - chr1.4:56315357-56315376 MS.gene036039:CDS 45.0%
! TTCAAACGAGTTGGCGATAC+GGG - chr1.4:56314361-56314380 MS.gene036039:CDS 45.0%
!! TTACAAAACTTCTCTGGGGC+CGG - chr1.4:56314059-56314078 MS.gene036039:CDS 45.0%
AATGACGACAAGGTGGTGTG+AGG + chr1.4:56313927-56313946 None:intergenic 50.0%
ACAAGGTGGTGTGAGGAAGA+GGG + chr1.4:56313920-56313939 None:intergenic 50.0%
AGAACGGATGAGGGAACTTC+CGG + chr1.4:56313984-56314003 None:intergenic 50.0%
AGGCTTGGAAGATTCCGTAC+CGG - chr1.4:56314300-56314319 MS.gene036039:CDS 50.0%
ATGGGCCAACCCATTTAACC+CGG + chr1.4:56314560-56314579 None:intergenic 50.0%
CCGAGTTTGGATAAGGCGAA+TGG - chr1.4:56314397-56314416 MS.gene036039:CDS 50.0%
CTAATGCTCCCTGGATTGAG+AGG + chr1.4:56315368-56315387 None:intergenic 50.0%
CTCATAGTCCGTGCACTCAA+AGG - chr1.4:56314280-56314299 MS.gene036039:CDS 50.0%
CTTCCAAGCCTTTGAGTGCA+CGG + chr1.4:56314291-56314310 None:intergenic 50.0%
GATCCACTGTGCCAATGTTG+TGG - chr1.4:56314473-56314492 MS.gene036039:intron 50.0%
GGTGGTGAAAGATCCAAGTC+CGG + chr1.4:56314586-56314605 None:intergenic 50.0%
GTGGTGAAAGATCCAAGTCC+GGG + chr1.4:56314585-56314604 None:intergenic 50.0%
GTTCCACAACATTGGCACAG+TGG + chr1.4:56314479-56314498 None:intergenic 50.0%
TCGGGCAATTAGTCCGAGTT+TGG - chr1.4:56314384-56314403 MS.gene036039:CDS 50.0%
TCTTTGCATGCCTCATGGCA+GGG - chr1.4:56315421-56315440 MS.gene036039:CDS 50.0%
TGGACCGGAGAATCGGAATT+TGG + chr1.4:56314203-56314222 None:intergenic 50.0%
TGTTGTCGAGGGACATAGTC+AGG + chr1.4:56314009-56314028 None:intergenic 50.0%
TTCTTTGCATGCCTCATGGC+AGG - chr1.4:56315420-56315439 MS.gene036039:CDS 50.0%
TTGTCGGAGGAATGACGACA+AGG + chr1.4:56313937-56313956 None:intergenic 50.0%
! ACGGACTATGAGAGTACGGT+GGG + chr1.4:56314272-56314291 None:intergenic 50.0%
! GTGCACGGACTATGAGAGTA+CGG + chr1.4:56314276-56314295 None:intergenic 50.0%
!! AAATGGGTTGGCCCATAACC+CGG - chr1.4:56314564-56314583 MS.gene036039:intron 50.0%
!! AGTTGGAAGCATCCAAAGGG+AGG + chr1.4:56314847-56314866 None:intergenic 50.0%
!! CTGAGAAGTGGTGGGTATGA+TGG - chr1.4:56314448-56314467 MS.gene036039:intron 50.0%
ACGTAGAGGTGGAGACCACT+CGG + chr1.4:56314229-56314248 None:intergenic 55.0%
AGACATCATGAGCTGCCACG+TGG + chr1.4:56314134-56314153 None:intergenic 55.0%
AGTCAGGCGAGAACGGATGA+GGG + chr1.4:56313993-56314012 None:intergenic 55.0%
AGTCCGTGCACTCAAAGGCT+TGG - chr1.4:56314285-56314304 MS.gene036039:CDS 55.0%
AGTGGTCTCCACCTCTACGT+TGG - chr1.4:56314229-56314248 MS.gene036039:CDS 55.0%
CGACAACCACTTTCCGCAAC+CGG - chr1.4:56313951-56313970 MS.gene036039:CDS 55.0%
CGGTTGCGGAAAGTGGTTGT+CGG + chr1.4:56313953-56313972 None:intergenic 55.0%
GACAAGGTGGTGTGAGGAAG+AGG + chr1.4:56313921-56313940 None:intergenic 55.0%
GATAGGGATTCCCTGCCATG+AGG + chr1.4:56315434-56315453 None:intergenic 55.0%
GGGACATAGTCAGGCGAGAA+CGG + chr1.4:56314000-56314019 None:intergenic 55.0%
TAGTCAGGCGAGAACGGATG+AGG + chr1.4:56313994-56314013 None:intergenic 55.0%
TCGGAATTTGGAAGCGGGTC+TGG + chr1.4:56314191-56314210 None:intergenic 55.0%
TCGGAGGAATGACGACAAGG+TGG + chr1.4:56313934-56313953 None:intergenic 55.0%
TTGCGGAAAGTGGTTGTCGG+AGG + chr1.4:56313950-56313969 None:intergenic 55.0%
! AACGAGTTGGCGATACGGGT+CGG - chr1.4:56314365-56314384 MS.gene036039:CDS 55.0%
! AGATTCCGTACCGGTGTCAG+TGG - chr1.4:56314309-56314328 MS.gene036039:CDS 55.0%
! CACGGACTATGAGAGTACGG+TGG + chr1.4:56314273-56314292 None:intergenic 55.0%
ATGGCAGGCCAACGTAGAGG+TGG + chr1.4:56314240-56314259 None:intergenic 60.0%
CGATGCCACTGACACCGGTA+CGG + chr1.4:56314317-56314336 None:intergenic 60.0%
GAGTCTCCGGTTGCGGAAAG+TGG + chr1.4:56313960-56313979 None:intergenic 60.0%
GGGAACTTCCGGTGAGTCTC+CGG + chr1.4:56313973-56313992 None:intergenic 60.0%
GTTGGCCCATAACCCGGACT+TGG - chr1.4:56314570-56314589 MS.gene036039:intron 60.0%
TAGAGGTGGAGACCACTCGG+CGG + chr1.4:56314226-56314245 None:intergenic 60.0%
TTCCGCAACCGGAGACTCAC+CGG - chr1.4:56313962-56313981 MS.gene036039:CDS 60.0%
TTCCGGTGAGTCTCCGGTTG+CGG + chr1.4:56313967-56313986 None:intergenic 60.0%
! ACGAGTTGGCGATACGGGTC+GGG - chr1.4:56314366-56314385 MS.gene036039:CDS 60.0%
! ACGGTGGTGACGAGAAGACC+CGG + chr1.4:56314094-56314113 None:intergenic 60.0%
! AGCGGGTCTGGAATATCCGC+CGG + chr1.4:56314179-56314198 None:intergenic 60.0%
! ATGAGAGTACGGTGGGCCCA+CGG + chr1.4:56314265-56314284 None:intergenic 60.0%
! GGTCTGGAATATCCGCCGGT+GGG + chr1.4:56314175-56314194 None:intergenic 60.0%
! GTCTGGAATATCCGCCGGTG+GGG + chr1.4:56314174-56314193 None:intergenic 60.0%
! TGGTGACGAGAAGACCCGGT+GGG + chr1.4:56314090-56314109 None:intergenic 60.0%
ACGTGGAGTTCCAGGCGGTG+CGG + chr1.4:56314117-56314136 None:intergenic 65.0%
CTGCCACGTGGAGTTCCAGG+CGG + chr1.4:56314122-56314141 None:intergenic 65.0%
GACGAGAAGACCCGGTGGGA+GGG + chr1.4:56314086-56314105 None:intergenic 65.0%
GAGCTGCCACGTGGAGTTCC+AGG + chr1.4:56314125-56314144 None:intergenic 65.0%
GGAATATCCGCCGGTGGGGT+CGG + chr1.4:56314170-56314189 None:intergenic 65.0%
GGCATGGCAGGCCAACGTAG+AGG + chr1.4:56314243-56314262 None:intergenic 65.0%
GTCAGTGGCATCGCCGGGAA+TGG - chr1.4:56314324-56314343 MS.gene036039:CDS 65.0%
GTGGCATCGCCGGGAATGGA+CGG - chr1.4:56314328-56314347 MS.gene036039:CDS 65.0%
TCCCACGACCCGTCCATTCC+CGG + chr1.4:56314340-56314359 None:intergenic 65.0%
TCGGCGGTGGACCGGAGAAT+CGG + chr1.4:56314210-56314229 None:intergenic 65.0%
TGACGAGAAGACCCGGTGGG+AGG + chr1.4:56314087-56314106 None:intergenic 65.0%
TGGCATCGCCGGGAATGGAC+GGG - chr1.4:56314329-56314348 MS.gene036039:CDS 65.0%
! ACCGGTGTCAGTGGCATCGC+CGG - chr1.4:56314318-56314337 MS.gene036039:CDS 65.0%
! GGGTCTGGAATATCCGCCGG+TGG + chr1.4:56314176-56314195 None:intergenic 65.0%
! GTGGTGACGAGAAGACCCGG+TGG + chr1.4:56314091-56314110 None:intergenic 65.0%
! TGAGAGTACGGTGGGCCCAC+GGG + chr1.4:56314264-56314283 None:intergenic 65.0%
AGGTGGAGACCACTCGGCGG+TGG + chr1.4:56314223-56314242 None:intergenic 70.0%
ATATCCGCCGGTGGGGTCGG+AGG + chr1.4:56314167-56314186 None:intergenic 70.0%
CCCGGCGATGCCACTGACAC+CGG + chr1.4:56314322-56314341 None:intergenic 70.0%
GAAGACCCGGTGGGAGGGAC+CGG + chr1.4:56314081-56314100 None:intergenic 70.0%
GAGACCACTCGGCGGTGGAC+CGG + chr1.4:56314218-56314237 None:intergenic 70.0%
GCACCGCCTGGAACTCCACG+TGG - chr1.4:56314116-56314135 MS.gene036039:intron 70.0%
GCCGGGAATGGACGGGTCGT+GGG - chr1.4:56314336-56314355 MS.gene036039:CDS 70.0%
GGAGTTCCAGGCGGTGCGGA+CGG + chr1.4:56314113-56314132 None:intergenic 70.0%
TATCCGCCGGTGGGGTCGGA+GGG + chr1.4:56314166-56314185 None:intergenic 70.0%
TTCTCCGGTCCACCGCCGAG+TGG - chr1.4:56314211-56314230 MS.gene036039:CDS 70.0%
! ACGTTGGCCTGCCATGCCCG+TGG - chr1.4:56314245-56314264 MS.gene036039:CDS 70.0%
! CCGGTGTCAGTGGCATCGCC+GGG - chr1.4:56314319-56314338 MS.gene036039:CDS 70.0%
! CGTTGGCCTGCCATGCCCGT+GGG - chr1.4:56314246-56314265 MS.gene036039:CDS 70.0%
CGCCGGGAATGGACGGGTCG+TGG - chr1.4:56314335-56314354 MS.gene036039:CDS 75.0%
CTCGCTCCCTCCGACCCCAC+CGG - chr1.4:56314157-56314176 MS.gene036039:intron 75.0%
GTACGGTGGGCCCACGGGCA+TGG + chr1.4:56314259-56314278 None:intergenic 75.0%
GTTCCAGGCGGTGCGGACGG+TGG + chr1.4:56314110-56314129 None:intergenic 75.0%
TCACCACCGTCCGCACCGCC+TGG - chr1.4:56314104-56314123 MS.gene036039:intron 75.0%
! CTGGGGCCGGTCCCTCCCAC+CGG - chr1.4:56314072-56314091 MS.gene036039:intron 80.0%
! GCTCCCTCCGACCCCACCGG+CGG - chr1.4:56314160-56314179 MS.gene036039:intron 80.0%
! GGTGGGCCCACGGGCATGGC+AGG + chr1.4:56314255-56314274 None:intergenic 80.0%
! TGGGGCCGGTCCCTCCCACC+GGG - chr1.4:56314073-56314092 MS.gene036039:intron 80.0%


Chromosome Type Strat End Strand Name
chr1.4 gene 56313896 56315484 56313896 ID=MS.gene036039
chr1.4 mRNA 56313896 56315484 56313896 ID=MS.gene036039.t1;Parent=MS.gene036039
chr1.4 exon 56314706 56315484 56314706 ID=MS.gene036039.t1.exon1;Parent=MS.gene036039.t1
chr1.4 CDS 56314706 56315484 56314706 ID=cds.MS.gene036039.t1;Parent=MS.gene036039.t1
chr1.4 exon 56314174 56314423 56314174 ID=MS.gene036039.t1.exon2;Parent=MS.gene036039.t1
chr1.4 CDS 56314174 56314423 56314174 ID=cds.MS.gene036039.t1;Parent=MS.gene036039.t1
chr1.4 exon 56313896 56314081 56313896 ID=MS.gene036039.t1.exon3;Parent=MS.gene036039.t1
chr1.4 CDS 56313896 56314081 56313896 ID=cds.MS.gene036039.t1;Parent=MS.gene036039.t1
Gene Sequence

>MS.gene036039

ATGTCGATGTTGTGCGCTTCTCCCTCTTCCTCACACCACCTTGTCGTCATTCCTCCGACAACCACTTTCCGCAACCGGAGACTCACCGGAAGTTCCCTCATCCGTTCTCGCCTGACTATGTCCCTCGACAACAACAACAATTCCTCTTCCCTACTGAGTTCTGTTACAAAACTTCTCTGGGGCCGGTCCCTCCCACCGGGTCTTCTCGTCACCACCGTCCGCACCGCCTGGAACTCCACGTGGCAGCTCATGATGTCTCAGCTCGCTCCCTCCGACCCCACCGGCGGATATTCCAGACCCGCTTCCAAATTCCGATTCTCCGGTCCACCGCCGAGTGGTCTCCACCTCTACGTTGGCCTGCCATGCCCGTGGGCCCACCGTACTCTCATAGTCCGTGCACTCAAAGGCTTGGAAGATTCCGTACCGGTGTCAGTGGCATCGCCGGGAATGGACGGGTCGTGGGAATTCAAACGAGTTGGCGATACGGGTCGGGCAATTAGTCCGAGTTTGGATAAGGCGAATGGTTGCAAGACTTTGAAGGAAGTTTATAGGCTGAGAAGTGGTGGGTATGATGGAAGATCCACTGTGCCAATGTTGTGGAACAAAGACTCCAAAGATGTTGTATGTAATGAGAGTTATGATATAATTCAATTGTTTAATTCCGGGTTAAATGGGTTGGCCCATAACCCGGACTTGGATCTTTCACCACCCGAGTTAAAGGATAAGATTGAGGAATGGTATCAAGTGATATATCCAAATGTGAACAATGGTGTGTATAGGTAAGAAATGCTAACAACTGCGTGCAACTTCTGTAATCACGATGAGTTTGAGAAAATCATGGTGACACTTTTGGTTTTGTTCAAAGCATATCATTGTAGCAAGTCATCGTGATTTTGTTTAACTCAGCGTGATTCCAAACATGCTCGAATATTTTCAACAACAGTTAGACCTCCCTTTGGATGCTTCCAACTCATACCATTGGAGTAGACATTCATCATTAATTTTGCTTCTGTCATCATTGATTATTGAATTGGGTATTATTGTTGCAATTTGCATTGCAGGTGTGGGTTTGCACAGAGCCAAGAAGCATATGATAAAGCGGTGAATGAGTTGTTTTGTACATTAGACAAGTTGGAGAATCACTTATCAAATTCTCGCTATTTGTGTGGAGACACGCTCACACTTGTTGATATATGTCTGTTTACTACTTTGATTCGGTTTGATATTGCTTATAATGTTTTGTTTAAATGCACCAAGAAGAAGTTGTATGAGTATACCAATCTACATGCCTACATGCGTCACATTTATCAGGTGCTTGCTTTGCTCAAAAAATGTTTAGGTTTATCTATCATTTGTGTTGTTTGTCTACTAACATAGTTGTATGTGTTTCGTGCCTTGGACAGATTCCCAAAGTTGCAGATACTTGTAATTTTCAAGAAATTATGGATGGTTACTACAAAACCCTTTTTCCTCTCAATCCAGGGAGCATTAGACCAATTATGCCTTCAACTTCAGAGCATGAAATTCTTTGCATGCCTCATGGCAGGGAATCCCTATCATCATCAACTGAACCAGTATTTGTTAAATAG

Protein sequence

>MS.gene036039.t1

MSMLCASPSSSHHLVVIPPTTTFRNRRLTGSSLIRSRLTMSLDNNNNSSSLLSSVTKLLWGRSLPPGLLVTTVRTAWNSTWQLMMSQLAPSDPTGGYSRPASKFRFSGPPPSGLHLYVGLPCPWAHRTLIVRALKGLEDSVPVSVASPGMDGSWEFKRVGDTGRAISPSLDKANGCKTLKEVYRLRSGGYDGRSTVPMLWNKDSKDVVCNESYDIIQLFNSGLNGLAHNPDLDLSPPELKDKIEEWYQVIYPNVNNGVYRCGFAQSQEAYDKAVNELFCTLDKLENHLSNSRYLCGDTLTLVDICLFTTLIRFDIAYNVLFKCTKKKLYEYTNLHAYMRHIYQIPKVADTCNFQEIMDGYYKTLFPLNPGSIRPIMPSTSEHEILCMPHGRESLSSSTEPVFVK