Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene56426.t1 | XP_003607882.1 | 98 | 355 | 7 | 0 | 1 | 355 | 1 | 355 | 1.80E-205 | 724.9 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene56426.t1 | P42620 | 48.0 | 321 | 150 | 4 | 37 | 351 | 15 | 324 | 9.8e-80 | 298.5 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene56426.t1 | G7JIT9 | 98.0 | 355 | 7 | 0 | 1 | 355 | 1 | 355 | 1.3e-205 | 724.9 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene23985 | MS.gene56426 | PPI |
| MS.gene036039 | MS.gene56426 | PPI |
| MS.gene038064 | MS.gene56426 | PPI |
| MS.gene56426 | MS.gene006897 | PPI |
| MS.gene56426 | MS.gene23985 | PPI |
| MS.gene56426 | MS.gene067562 | PPI |
| MS.gene89555 | MS.gene56426 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene56426.t1 | MTR_4g084040 | 98.028 | 355 | 7 | 0 | 1 | 355 | 1 | 355 | 0.0 | 727 |
| MS.gene56426.t1 | MTR_4g084040 | 98.769 | 325 | 4 | 0 | 31 | 355 | 1 | 325 | 0.0 | 671 |
| MS.gene56426.t1 | MTR_4g084040 | 98.824 | 255 | 3 | 0 | 101 | 355 | 5 | 259 | 0.0 | 529 |
| MS.gene56426.t1 | MTR_1g069575 | 42.470 | 332 | 168 | 6 | 30 | 355 | 85 | 399 | 2.45e-80 | 251 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene56426.t1 | AT4G19880 | 82.515 | 326 | 57 | 0 | 29 | 354 | 30 | 355 | 0.0 | 578 |
| MS.gene56426.t1 | AT4G19880 | 76.420 | 352 | 57 | 1 | 29 | 354 | 30 | 381 | 0.0 | 565 |
| MS.gene56426.t1 | AT5G45020 | 77.231 | 325 | 74 | 0 | 31 | 355 | 1 | 325 | 0.0 | 550 |
| MS.gene56426.t1 | AT5G45020 | 77.231 | 325 | 74 | 0 | 31 | 355 | 1 | 325 | 0.0 | 550 |
| MS.gene56426.t1 | AT5G44990 | 74.194 | 310 | 80 | 0 | 45 | 354 | 12 | 321 | 7.32e-178 | 497 |
| MS.gene56426.t1 | AT5G44990 | 74.194 | 310 | 80 | 0 | 45 | 354 | 12 | 321 | 7.32e-178 | 497 |
| MS.gene56426.t1 | AT4G19880 | 77.863 | 262 | 58 | 0 | 18 | 279 | 19 | 280 | 2.75e-153 | 434 |
| MS.gene56426.t1 | AT5G44990 | 76.170 | 235 | 56 | 0 | 45 | 279 | 12 | 246 | 1.42e-135 | 387 |
| MS.gene56426.t1 | AT5G44990 | 73.109 | 238 | 64 | 0 | 117 | 354 | 1 | 238 | 2.22e-131 | 376 |
| MS.gene56426.t1 | AT5G44000 | 39.879 | 331 | 188 | 3 | 25 | 351 | 64 | 387 | 1.93e-78 | 246 |
Find 80 sgRNAs with CRISPR-Local
Find 178 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ACTCATTAGTCTCATCAATT+TGG | 0.137715 | 4.4:-28850227 | None:intergenic |
| TTTCTGACTCAGCTGGAAAT+TGG | 0.186959 | 4.4:-28849602 | None:intergenic |
| TCAGCTGGAAATTGGGAATT+TGG | 0.189302 | 4.4:-28849594 | None:intergenic |
| ATCAGTCGGTCAAACCTATA+TGG | 0.237836 | 4.4:+28849812 | MS.gene56426:intron |
| TAAACACCGTTGTTTATATT+AGG | 0.242592 | 4.4:-28850258 | None:intergenic |
| TTGGTGTAATTGAAGATATT+TGG | 0.251559 | 4.4:-28851426 | None:intergenic |
| TAAAGAATCAGATGAATATA+TGG | 0.262799 | 4.4:+28849843 | MS.gene56426:CDS |
| CTCATTAGTCTCATCAATTT+GGG | 0.279709 | 4.4:-28850226 | None:intergenic |
| TACTGCTAATGCCAGGGATT+TGG | 0.306689 | 4.4:-28851458 | None:intergenic |
| TACAGGAACAGTGAACTTTC+CGG | 0.323413 | 4.4:-28849974 | None:intergenic |
| CATCCTTCTATCAATCCATT+TGG | 0.329006 | 4.4:+28851522 | MS.gene56426:CDS |
| CATATAAAGTTGCATTACTA+TGG | 0.346462 | 4.4:+28851495 | MS.gene56426:CDS |
| AGGACCTCGGTATTCGATTC+AGG | 0.356321 | 4.4:-28849877 | None:intergenic |
| GGAGCAAAATAATCGATATT+TGG | 0.360002 | 4.4:-28851561 | None:intergenic |
| GCATTAGCATATTGTTGAAA+TGG | 0.371083 | 4.4:+28849488 | MS.gene56426:intron |
| TTCTGACTCAGCTGGAAATT+GGG | 0.373113 | 4.4:-28849601 | None:intergenic |
| TCAGTCGGTCAAACCTATAT+GGG | 0.381315 | 4.4:+28849813 | MS.gene56426:intron |
| TCCATTTGGGATCGTTCCTA+TGG | 0.386731 | 4.4:+28851536 | MS.gene56426:CDS |
| AGGGATTTGGAAAATGTCTT+TGG | 0.388256 | 4.4:-28851445 | None:intergenic |
| TGACAAAGCCATCAGTTTCT+CGG | 0.393121 | 4.4:+28849698 | MS.gene56426:CDS |
| ACATATCATATGCTTGTCCT+TGG | 0.402858 | 4.4:+28849637 | MS.gene56426:CDS |
| TCTTTAGTTCTTCCCCATAT+AGG | 0.406552 | 4.4:-28849826 | None:intergenic |
| ATCCTTCTATCAATCCATTT+GGG | 0.416102 | 4.4:+28851523 | MS.gene56426:CDS |
| TTTGCTCCATTCAAAGGATC+AGG | 0.416369 | 4.4:-28849910 | None:intergenic |
| CATATCATATGCTTGTCCTT+GGG | 0.421419 | 4.4:+28849638 | MS.gene56426:CDS |
| TTACCTTGTAGTGGCGGTTG+TGG | 0.424148 | 4.4:-28848956 | None:intergenic |
| AGTGTAACAAGAAGCTAATA+CGG | 0.426098 | 4.4:+28851397 | MS.gene56426:CDS |
| TGAAATGGTGCGATCATCAT+TGG | 0.429670 | 4.4:+28849503 | MS.gene56426:CDS |
| TACCTTGTAGTGGCGGTTGT+GGG | 0.437547 | 4.4:-28848955 | None:intergenic |
| TTGCTCCTCACGACAGAGAA+AGG | 0.440332 | 4.4:+28851577 | MS.gene56426:CDS |
| ATCCCAAATGGATTGATAGA+AGG | 0.448428 | 4.4:-28851525 | None:intergenic |
| AAGAGAATTATATGATGCTT+TGG | 0.452830 | 4.4:+28850421 | MS.gene56426:CDS |
| TGATATCTTTCTGACTCAGC+TGG | 0.460465 | 4.4:-28849609 | None:intergenic |
| TTCACTGTACTGCTAATGCC+AGG | 0.471207 | 4.4:-28851465 | None:intergenic |
| CCATTTGGGATCGTTCCTAT+GGG | 0.473199 | 4.4:+28851537 | MS.gene56426:CDS |
| AAAGAATCAGATGAATATAT+GGG | 0.478002 | 4.4:+28849844 | MS.gene56426:CDS |
| GAATCGAATACCGAGGTCCT+TGG | 0.488511 | 4.4:+28849880 | MS.gene56426:CDS |
| TAGATACATACATCAATGTA+TGG | 0.492426 | 4.4:-28850309 | None:intergenic |
| GGAGAAGAAAGAGAGGGTAG+AGG | 0.497397 | 4.4:-28848934 | None:intergenic |
| GATCCTTTGAAACGAATTGT+CGG | 0.500867 | 4.4:-28849572 | None:intergenic |
| AACAACGGTGTTTATAGATG+TGG | 0.501716 | 4.4:+28850267 | MS.gene56426:CDS |
| TAATCGATATTTGGCCCCAT+AGG | 0.502361 | 4.4:-28851552 | None:intergenic |
| CTTGCTTACTTGAAAATCAA+AGG | 0.511306 | 4.4:+28849672 | MS.gene56426:CDS |
| GCTGAACCTGATCCTTTGAA+TGG | 0.511651 | 4.4:+28849904 | MS.gene56426:CDS |
| CTCCCACAACCGCCACTACA+AGG | 0.513990 | 4.4:+28848953 | MS.gene56426:CDS |
| TATTGCAGAAAATCCCATCT+TGG | 0.515927 | 4.4:+28850179 | MS.gene56426:CDS |
| ACACTCTTTGCTCCATTCAA+AGG | 0.520150 | 4.4:-28849916 | None:intergenic |
| ATTCCGACAATTCGTTTCAA+AGG | 0.521710 | 4.4:+28849569 | MS.gene56426:CDS |
| CCCATAGGAACGATCCCAAA+TGG | 0.534040 | 4.4:-28851537 | None:intergenic |
| ACAACGGTGTTTATAGATGT+GGG | 0.539714 | 4.4:+28850268 | MS.gene56426:CDS |
| AGAGGGATACAAGTCCAAGA+TGG | 0.539809 | 4.4:-28850193 | None:intergenic |
| ATGTGGGTTTGCAAAGAAGC+AGG | 0.547240 | 4.4:+28850284 | MS.gene56426:CDS |
| CACTCTCATTAGATTTGATG+AGG | 0.551830 | 4.4:+28850523 | MS.gene56426:CDS |
| AATTTGGGCTTGCAATTCAG+AGG | 0.553763 | 4.4:-28850211 | None:intergenic |
| TTTGATCTGCACAGATTCTG+TGG | 0.559429 | 4.4:+28850082 | MS.gene56426:intron |
| CATTAGCAGTACAGTGAACA+TGG | 0.560651 | 4.4:+28851470 | MS.gene56426:CDS |
| TTGATCTGCACAGATTCTGT+GGG | 0.561111 | 4.4:+28850083 | MS.gene56426:intron |
| GAGGGATACAAGTCCAAGAT+GGG | 0.566317 | 4.4:-28850192 | None:intergenic |
| AATCAGATGAATATATGGGA+TGG | 0.573584 | 4.4:+28849848 | MS.gene56426:CDS |
| AATTGTTAACAACGAGAGCT+CGG | 0.575907 | 4.4:+28850122 | MS.gene56426:CDS |
| GTGTAACAAGAAGCTAATAC+GGG | 0.576905 | 4.4:+28851398 | MS.gene56426:CDS |
| GGTTGTGGGAGAAGAAAGAG+AGG | 0.582445 | 4.4:-28848941 | None:intergenic |
| AGCAAGCAACGCTATATATG+TGG | 0.582625 | 4.4:+28850464 | MS.gene56426:CDS |
| AAGGATCAGGTTCAGCTCCA+AGG | 0.583231 | 4.4:-28849897 | None:intergenic |
| TGAAACGAATTGTCGGAATG+TGG | 0.585197 | 4.4:-28849565 | None:intergenic |
| ATTTGGGCTTGCAATTCAGA+GGG | 0.602774 | 4.4:-28850210 | None:intergenic |
| CCTACTAACCGAGAAACTGA+TGG | 0.608850 | 4.4:-28849706 | None:intergenic |
| ATTGGATGAGATATCAGACT+CGG | 0.620767 | 4.4:+28849521 | MS.gene56426:CDS |
| GCAAGGCATCTGCAAGCCCA+AGG | 0.621992 | 4.4:-28849654 | None:intergenic |
| TTGGATGAGATATCAGACTC+GGG | 0.645525 | 4.4:+28849522 | MS.gene56426:CDS |
| CAGTCGGTCAAACCTATATG+GGG | 0.647505 | 4.4:+28849814 | MS.gene56426:intron |
| AGGTTCAGCTCCAAGGACCT+CGG | 0.647588 | 4.4:-28849890 | None:intergenic |
| ATTGCGAGTACAAACTACTC+CGG | 0.648781 | 4.4:+28849955 | MS.gene56426:CDS |
| TGATGCTTTGGACAAATGCG+AGG | 0.659801 | 4.4:+28850433 | MS.gene56426:CDS |
| TCACTGTACTGCTAATGCCA+GGG | 0.660442 | 4.4:-28851464 | None:intergenic |
| GAAAACCTTTCTCTGTCGTG+AGG | 0.664094 | 4.4:-28851582 | None:intergenic |
| CATTTGGGATCGTTCCTATG+GGG | 0.667700 | 4.4:+28851538 | MS.gene56426:CDS |
| GTTGTGGGAGAAGAAAGAGA+GGG | 0.691537 | 4.4:-28848940 | None:intergenic |
| ATATATCCTAATATAAACAA+CGG | 0.698242 | 4.4:+28850252 | MS.gene56426:CDS |
| AAATTGATGAGACTAATGAG+TGG | 0.709533 | 4.4:+28850229 | MS.gene56426:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAAACATTAAAATTCAATA+TGG | + | chr4.4:28851007-28851026 | MS.gene56426:intron | 10.0% |
| !! | AATAAACTAAAAAAAGCTTA+TGG | - | chr4.4:28849226-28849245 | None:intergenic | 15.0% |
| !! | ATATATCCTAATATAAACAA+CGG | + | chr4.4:28850252-28850271 | MS.gene56426:CDS | 15.0% |
| !! | TTACTTAAAAATCAAAACAT+CGG | - | chr4.4:28851336-28851355 | None:intergenic | 15.0% |
| !!! | TATCTATTTTTTACTTTTTC+AGG | + | chr4.4:28850326-28850345 | MS.gene56426:intron | 15.0% |
| !! | AAAGAATCAGATGAATATAT+GGG | + | chr4.4:28849844-28849863 | MS.gene56426:CDS | 20.0% |
| !! | AATGATATAGAAGAAAACTA+AGG | - | chr4.4:28849415-28849434 | None:intergenic | 20.0% |
| !! | ATATCATTTAACTACTTTGA+AGG | + | chr4.4:28849427-28849446 | MS.gene56426:intron | 20.0% |
| !! | TAAAGAATCAGATGAATATA+TGG | + | chr4.4:28849843-28849862 | MS.gene56426:CDS | 20.0% |
| !! | TACTTAAAAATCAAAACATC+GGG | - | chr4.4:28851335-28851354 | None:intergenic | 20.0% |
| !! | TTGATTTATTAATTCAGACA+AGG | - | chr4.4:28850619-28850638 | None:intergenic | 20.0% |
| ! | AACAAAATGAGTCACAAAAT+AGG | - | chr4.4:28851299-28851318 | None:intergenic | 25.0% |
| ! | AAGAGAATTATATGATGCTT+TGG | + | chr4.4:28850421-28850440 | MS.gene56426:CDS | 25.0% |
| ! | AATTAATAAATCAACCTCAG+CGG | + | chr4.4:28850625-28850644 | MS.gene56426:intron | 25.0% |
| ! | ACAATAAAGCAATAACAAGA+AGG | - | chr4.4:28851107-28851126 | None:intergenic | 25.0% |
| ! | CATATAAAGTTGCATTACTA+TGG | + | chr4.4:28851495-28851514 | MS.gene56426:CDS | 25.0% |
| ! | TAAACACCGTTGTTTATATT+AGG | - | chr4.4:28850261-28850280 | None:intergenic | 25.0% |
| ! | TAAACCTGCAATTATAACAA+TGG | - | chr4.4:28851363-28851382 | None:intergenic | 25.0% |
| ! | TAGATACATACATCAATGTA+TGG | - | chr4.4:28850312-28850331 | None:intergenic | 25.0% |
| ! | TCATGAACTAATGTTCTATT+TGG | + | chr4.4:28849124-28849143 | MS.gene56426:intron | 25.0% |
| ! | TTAACTTATAGCATGCTAAA+GGG | + | chr4.4:28851149-28851168 | MS.gene56426:intron | 25.0% |
| ! | TTGCATGTTTAATAATCAGT+CGG | + | chr4.4:28849798-28849817 | MS.gene56426:intron | 25.0% |
| ! | TTGGTGTAATTGAAGATATT+TGG | - | chr4.4:28851429-28851448 | None:intergenic | 25.0% |
| !! | ATATCTGTTCAACATTTTGA+TGG | + | chr4.4:28851236-28851255 | MS.gene56426:intron | 25.0% |
| !! | ATTGCTTTATTGTTATTCGA+TGG | + | chr4.4:28851114-28851133 | MS.gene56426:intron | 25.0% |
| !! | CAATAATTTTTACCTTGTAG+TGG | - | chr4.4:28848968-28848987 | None:intergenic | 25.0% |
| !! | TTAAGTTGTTTATCGAAACA+GGG | + | chr4.4:28849389-28849408 | MS.gene56426:intron | 25.0% |
| !! | TTTAACTTATAGCATGCTAA+AGG | + | chr4.4:28851148-28851167 | MS.gene56426:intron | 25.0% |
| !! | TTTTGCTTAATATTTGCAAC+TGG | + | chr4.4:28849732-28849751 | MS.gene56426:intron | 25.0% |
| !!! | GCAATTTGGTTTTTGAAATT+CGG | - | chr4.4:28850919-28850938 | None:intergenic | 25.0% |
| AAAAATCAAAACATCGGGAT+GGG | - | chr4.4:28851330-28851349 | None:intergenic | 30.0% | |
| AAATTGATGAGACTAATGAG+TGG | + | chr4.4:28850229-28850248 | MS.gene56426:CDS | 30.0% | |
| AAGGATATGTTTAGATAGAG+AGG | - | chr4.4:28851044-28851063 | None:intergenic | 30.0% | |
| AATAACAAGAAGGAAACACT+TGG | - | chr4.4:28851097-28851116 | None:intergenic | 30.0% | |
| AATCAGATGAATATATGGGA+TGG | + | chr4.4:28849848-28849867 | MS.gene56426:CDS | 30.0% | |
| AGTGTAACAAGAAGCTAATA+CGG | + | chr4.4:28851397-28851416 | MS.gene56426:CDS | 30.0% | |
| ATCCTTCTATCAATCCATTT+GGG | + | chr4.4:28851523-28851542 | MS.gene56426:CDS | 30.0% | |
| ATGTTATGTACCAAACAGTT+TGG | - | chr4.4:28850829-28850848 | None:intergenic | 30.0% | |
| CTCTATCTAAACATATCCTT+AGG | + | chr4.4:28851044-28851063 | MS.gene56426:intron | 30.0% | |
| CTTGCTTACTTGAAAATCAA+AGG | + | chr4.4:28849672-28849691 | MS.gene56426:CDS | 30.0% | |
| GCATTAGCATATTGTTGAAA+TGG | + | chr4.4:28849488-28849507 | MS.gene56426:intron | 30.0% | |
| GGAGCAAAATAATCGATATT+TGG | - | chr4.4:28851564-28851583 | None:intergenic | 30.0% | |
| TAAAAATCAAAACATCGGGA+TGG | - | chr4.4:28851331-28851350 | None:intergenic | 30.0% | |
| TAACTTATAGCATGCTAAAG+GGG | + | chr4.4:28851150-28851169 | MS.gene56426:intron | 30.0% | |
| TACTCCCAAATATCAAGAAT+AGG | - | chr4.4:28850581-28850600 | None:intergenic | 30.0% | |
| TATGTTTAGATAGAGAGGTT+TGG | - | chr4.4:28851039-28851058 | None:intergenic | 30.0% | |
| TTCTAATCTCATTCTCTGAA+TGG | - | chr4.4:28850673-28850692 | None:intergenic | 30.0% | |
| ! | ACTCATTAGTCTCATCAATT+TGG | - | chr4.4:28850230-28850249 | None:intergenic | 30.0% |
| ! | AGCATTTGAAACTGTTCATT+TGG | + | chr4.4:28850381-28850400 | MS.gene56426:intron | 30.0% |
| ! | CTCATTAGTCTCATCAATTT+GGG | - | chr4.4:28850229-28850248 | None:intergenic | 30.0% |
| ! | GTTAAGTTGTTTATCGAAAC+AGG | + | chr4.4:28849388-28849407 | MS.gene56426:intron | 30.0% |
| ! | TAATTTTTACCTTGTAGTGG+CGG | - | chr4.4:28848965-28848984 | None:intergenic | 30.0% |
| ! | TGCGTAACTTGTCAAAAATA+TGG | + | chr4.4:28850956-28850975 | MS.gene56426:intron | 30.0% |
| !! | ATTCTAAAGCAAAAACCTAC+AGG | - | chr4.4:28849994-28850013 | None:intergenic | 30.0% |
| !! | CAACATTTTGATGGAATTAG+AGG | + | chr4.4:28851245-28851264 | MS.gene56426:intron | 30.0% |
| !!! | CTTTGATTTTCAAGTAAGCA+AGG | - | chr4.4:28849674-28849693 | None:intergenic | 30.0% |
| !!! | TGTAGGTTTTTGCTTTAGAA+TGG | + | chr4.4:28849993-28850012 | MS.gene56426:intron | 30.0% |
| AACAACGGTGTTTATAGATG+TGG | + | chr4.4:28850267-28850286 | MS.gene56426:CDS | 35.0% | |
| AATTGTTAACAACGAGAGCT+CGG | + | chr4.4:28850122-28850141 | MS.gene56426:CDS | 35.0% | |
| ACAACGGTGTTTATAGATGT+GGG | + | chr4.4:28850268-28850287 | MS.gene56426:CDS | 35.0% | |
| ACATATCATATGCTTGTCCT+TGG | + | chr4.4:28849637-28849656 | MS.gene56426:CDS | 35.0% | |
| AGGGATTTGGAAAATGTCTT+TGG | - | chr4.4:28851448-28851467 | None:intergenic | 35.0% | |
| AGTTACGCAGTCTTAAAACT+AGG | - | chr4.4:28850945-28850964 | None:intergenic | 35.0% | |
| ATTCCGACAATTCGTTTCAA+AGG | + | chr4.4:28849569-28849588 | MS.gene56426:CDS | 35.0% | |
| ATTGGATGAGATATCAGACT+CGG | + | chr4.4:28849521-28849540 | MS.gene56426:CDS | 35.0% | |
| CACTCTCATTAGATTTGATG+AGG | + | chr4.4:28850523-28850542 | MS.gene56426:CDS | 35.0% | |
| CATATCATATGCTTGTCCTT+GGG | + | chr4.4:28849638-28849657 | MS.gene56426:CDS | 35.0% | |
| CATCCTTCTATCAATCCATT+TGG | + | chr4.4:28851522-28851541 | MS.gene56426:CDS | 35.0% | |
| GGCACCTATTCTTGATATTT+GGG | + | chr4.4:28850574-28850593 | MS.gene56426:intron | 35.0% | |
| GTGTAACAAGAAGCTAATAC+GGG | + | chr4.4:28851398-28851417 | MS.gene56426:CDS | 35.0% | |
| GTTACGCAGTCTTAAAACTA+GGG | - | chr4.4:28850944-28850963 | None:intergenic | 35.0% | |
| GTTATTCGATGGACACTTAA+TGG | + | chr4.4:28851125-28851144 | MS.gene56426:intron | 35.0% | |
| TAGAGGAACATACAAGAACT+GGG | + | chr4.4:28851262-28851281 | MS.gene56426:intron | 35.0% | |
| TATACCAGCAAAGGTTACTA+GGG | - | chr4.4:28850731-28850750 | None:intergenic | 35.0% | |
| TATCAAACTGTTTGAGCACT+CGG | - | chr4.4:28850896-28850915 | None:intergenic | 35.0% | |
| TATTGCAGAAAATCCCATCT+TGG | + | chr4.4:28850179-28850198 | MS.gene56426:CDS | 35.0% | |
| TTACGCAGTCTTAAAACTAG+GGG | - | chr4.4:28850943-28850962 | None:intergenic | 35.0% | |
| TTAGAGGAACATACAAGAAC+TGG | + | chr4.4:28851261-28851280 | MS.gene56426:intron | 35.0% | |
| TTCGCCATTGTTATAATTGC+AGG | + | chr4.4:28851356-28851375 | MS.gene56426:intron | 35.0% | |
| ! | AAAGACATTTTCCAAATCCC+TGG | + | chr4.4:28851447-28851466 | MS.gene56426:CDS | 35.0% |
| ! | AGTTTACTGATTAATGCCTG+TGG | - | chr4.4:28851072-28851091 | None:intergenic | 35.0% |
| ! | TTAAAACTAGGGGTGCAATT+TGG | - | chr4.4:28850933-28850952 | None:intergenic | 35.0% |
| !! | ATCCCAAATGGATTGATAGA+AGG | - | chr4.4:28851528-28851547 | None:intergenic | 35.0% |
| !! | GATCCTTTGAAACGAATTGT+CGG | - | chr4.4:28849575-28849594 | None:intergenic | 35.0% |
| !! | TCTTTAGTTCTTCCCCATAT+AGG | - | chr4.4:28849829-28849848 | None:intergenic | 35.0% |
| AATTTGGGCTTGCAATTCAG+AGG | - | chr4.4:28850214-28850233 | None:intergenic | 40.0% | |
| ACACTCTTTGCTCCATTCAA+AGG | - | chr4.4:28849919-28849938 | None:intergenic | 40.0% | |
| AGAGGAACATACAAGAACTG+GGG | + | chr4.4:28851263-28851282 | MS.gene56426:intron | 40.0% | |
| AGCAAGCAACGCTATATATG+TGG | + | chr4.4:28850464-28850483 | MS.gene56426:CDS | 40.0% | |
| ATCAGTCGGTCAAACCTATA+TGG | + | chr4.4:28849812-28849831 | MS.gene56426:intron | 40.0% | |
| ATGACCAAGTATACCAGCAA+AGG | - | chr4.4:28850740-28850759 | None:intergenic | 40.0% | |
| ATTGCGAGTACAAACTACTC+CGG | + | chr4.4:28849955-28849974 | MS.gene56426:CDS | 40.0% | |
| ATTTGGGCTTGCAATTCAGA+GGG | - | chr4.4:28850213-28850232 | None:intergenic | 40.0% | |
| CATTAGCAGTACAGTGAACA+TGG | + | chr4.4:28851470-28851489 | MS.gene56426:CDS | 40.0% | |
| GGGCACCTATTCTTGATATT+TGG | + | chr4.4:28850573-28850592 | MS.gene56426:intron | 40.0% | |
| GTAACCTTTGCTGGTATACT+TGG | + | chr4.4:28850733-28850752 | MS.gene56426:intron | 40.0% | |
| GTATACCAGCAAAGGTTACT+AGG | - | chr4.4:28850732-28850751 | None:intergenic | 40.0% | |
| TAATAAATCAACCTCAGCGG+AGG | + | chr4.4:28850628-28850647 | MS.gene56426:intron | 40.0% | |
| TAATCGATATTTGGCCCCAT+AGG | - | chr4.4:28851555-28851574 | None:intergenic | 40.0% | |
| TACAGGAACAGTGAACTTTC+CGG | - | chr4.4:28849977-28849996 | None:intergenic | 40.0% | |
| TAGATAGAGAGGTTTGGAGA+GGG | - | chr4.4:28851033-28851052 | None:intergenic | 40.0% | |
| TCAGCTGGAAATTGGGAATT+TGG | - | chr4.4:28849597-28849616 | None:intergenic | 40.0% | |
| TCAGTCGGTCAAACCTATAT+GGG | + | chr4.4:28849813-28849832 | MS.gene56426:intron | 40.0% | |
| TGAAACGAATTGTCGGAATG+TGG | - | chr4.4:28849568-28849587 | None:intergenic | 40.0% | |
| TGAAATGGTGCGATCATCAT+TGG | + | chr4.4:28849503-28849522 | MS.gene56426:CDS | 40.0% | |
| TGACAAAGCCATCAGTTTCT+CGG | + | chr4.4:28849698-28849717 | MS.gene56426:CDS | 40.0% | |
| TGATATCTTTCTGACTCAGC+TGG | - | chr4.4:28849612-28849631 | None:intergenic | 40.0% | |
| TTAGATAGAGAGGTTTGGAG+AGG | - | chr4.4:28851034-28851053 | None:intergenic | 40.0% | |
| TTCTGACTCAGCTGGAAATT+GGG | - | chr4.4:28849604-28849623 | None:intergenic | 40.0% | |
| TTGATCTGCACAGATTCTGT+GGG | + | chr4.4:28850083-28850102 | MS.gene56426:intron | 40.0% | |
| TTGGATGAGATATCAGACTC+GGG | + | chr4.4:28849522-28849541 | MS.gene56426:CDS | 40.0% | |
| TTTCTGACTCAGCTGGAAAT+TGG | - | chr4.4:28849605-28849624 | None:intergenic | 40.0% | |
| TTTGATCTGCACAGATTCTG+TGG | + | chr4.4:28850082-28850101 | MS.gene56426:intron | 40.0% | |
| TTTGCTCCATTCAAAGGATC+AGG | - | chr4.4:28849913-28849932 | None:intergenic | 40.0% | |
| ! | TTTTCCTGAATCGAATACCG+AGG | + | chr4.4:28849873-28849892 | MS.gene56426:CDS | 40.0% |
| !! | TAAAGGGGAAAGCTTTGAAG+TGG | + | chr4.4:28851165-28851184 | MS.gene56426:intron | 40.0% |
| AACATATCCTTAGGCACCAC+AGG | + | chr4.4:28851053-28851072 | MS.gene56426:intron | 45.0% | |
| AGAGGGATACAAGTCCAAGA+TGG | - | chr4.4:28850196-28850215 | None:intergenic | 45.0% | |
| AGTACCCTAGTAACCTTTGC+TGG | + | chr4.4:28850724-28850743 | MS.gene56426:intron | 45.0% | |
| ATAGTGTGCGACTTTGTGTG+TGG | + | chr4.4:28850547-28850566 | MS.gene56426:intron | 45.0% | |
| ATGTGGGTTTGCAAAGAAGC+AGG | + | chr4.4:28850284-28850303 | MS.gene56426:CDS | 45.0% | |
| ATTAATGCCTGTGGTGCCTA+AGG | - | chr4.4:28851063-28851082 | None:intergenic | 45.0% | |
| CAGTCGGTCAAACCTATATG+GGG | + | chr4.4:28849814-28849833 | MS.gene56426:intron | 45.0% | |
| CCATCAGTTTCTCGGTTAGT+AGG | + | chr4.4:28849706-28849725 | MS.gene56426:intron | 45.0% | |
| CCTACTAACCGAGAAACTGA+TGG | - | chr4.4:28849709-28849728 | None:intergenic | 45.0% | |
| CGTTCAACTCAATCCTCTGA+TGG | - | chr4.4:28850704-28850723 | None:intergenic | 45.0% | |
| GAAAACCTTTCTCTGTCGTG+AGG | - | chr4.4:28851585-28851604 | None:intergenic | 45.0% | |
| GACTGAGTTGCCAAACTGTT+TGG | + | chr4.4:28850816-28850835 | MS.gene56426:intron | 45.0% | |
| GAGGGATACAAGTCCAAGAT+GGG | - | chr4.4:28850195-28850214 | None:intergenic | 45.0% | |
| GCGTTAGGTCTTAAAGGTGA+AGG | + | chr4.4:28850783-28850802 | MS.gene56426:intron | 45.0% | |
| GCTGAACCTGATCCTTTGAA+TGG | + | chr4.4:28849904-28849923 | MS.gene56426:CDS | 45.0% | |
| GGAAAGTTCACTGTTCCTGT+AGG | + | chr4.4:28849976-28849995 | MS.gene56426:intron | 45.0% | |
| GTTCATTTGGTCCTTTGTGC+AGG | + | chr4.4:28850394-28850413 | MS.gene56426:intron | 45.0% | |
| GTTGTGGGAGAAGAAAGAGA+GGG | - | chr4.4:28848943-28848962 | None:intergenic | 45.0% | |
| TACTGCTAATGCCAGGGATT+TGG | - | chr4.4:28851461-28851480 | None:intergenic | 45.0% | |
| TAGTGTGCGACTTTGTGTGT+GGG | + | chr4.4:28850548-28850567 | MS.gene56426:intron | 45.0% | |
| TCACTGTACTGCTAATGCCA+GGG | - | chr4.4:28851467-28851486 | None:intergenic | 45.0% | |
| TTCACTGTACTGCTAATGCC+AGG | - | chr4.4:28851468-28851487 | None:intergenic | 45.0% | |
| ! | CATTTGGGATCGTTCCTATG+GGG | + | chr4.4:28851538-28851557 | MS.gene56426:CDS | 45.0% |
| ! | CCATTTGGGATCGTTCCTAT+GGG | + | chr4.4:28851537-28851556 | MS.gene56426:CDS | 45.0% |
| ! | GAGGTGGGTCTTATGTCTTT+GGG | + | chr4.4:28850647-28850666 | MS.gene56426:intron | 45.0% |
| ! | TAGAAGATCGACTCCATCAG+AGG | + | chr4.4:28850688-28850707 | MS.gene56426:intron | 45.0% |
| ! | TCCATTTGGGATCGTTCCTA+TGG | + | chr4.4:28851536-28851555 | MS.gene56426:CDS | 45.0% |
| ! | TGATGCTTTGGACAAATGCG+AGG | + | chr4.4:28850433-28850452 | MS.gene56426:CDS | 45.0% |
| !! | ACCTTTAAGACCTAACGCTC+GGG | - | chr4.4:28850781-28850800 | None:intergenic | 45.0% |
| !! | CACCTTTAAGACCTAACGCT+CGG | - | chr4.4:28850782-28850801 | None:intergenic | 45.0% |
| AAATCAACCTCAGCGGAGGT+GGG | + | chr4.4:28850632-28850651 | MS.gene56426:intron | 50.0% | |
| AAGGATCAGGTTCAGCTCCA+AGG | - | chr4.4:28849900-28849919 | None:intergenic | 50.0% | |
| AGGACCTCGGTATTCGATTC+AGG | - | chr4.4:28849880-28849899 | None:intergenic | 50.0% | |
| AGTTTGGCAACTCAGTCCAC+TGG | - | chr4.4:28850813-28850832 | None:intergenic | 50.0% | |
| CCCATAGGAACGATCCCAAA+TGG | - | chr4.4:28851540-28851559 | None:intergenic | 50.0% | |
| CCTAAAAGGCGAAGACGTTC+AGG | + | chr4.4:28850866-28850885 | MS.gene56426:intron | 50.0% | |
| GAATCGAATACCGAGGTCCT+TGG | + | chr4.4:28849880-28849899 | MS.gene56426:CDS | 50.0% | |
| GGAGAAGAAAGAGAGGGTAG+AGG | - | chr4.4:28848937-28848956 | None:intergenic | 50.0% | |
| GGTTGTGGGAGAAGAAAGAG+AGG | - | chr4.4:28848944-28848963 | None:intergenic | 50.0% | |
| TAAATCAACCTCAGCGGAGG+TGG | + | chr4.4:28850631-28850650 | MS.gene56426:intron | 50.0% | |
| TACCTTGTAGTGGCGGTTGT+GGG | - | chr4.4:28848958-28848977 | None:intergenic | 50.0% | |
| TGCGACTTTGTGTGTGGGTT+GGG | + | chr4.4:28850553-28850572 | MS.gene56426:intron | 50.0% | |
| TTACCTTGTAGTGGCGGTTG+TGG | - | chr4.4:28848959-28848978 | None:intergenic | 50.0% | |
| TTCTCTTGCAGCCTGCACAA+AGG | - | chr4.4:28850408-28850427 | None:intergenic | 50.0% | |
| TTGCTCCTCACGACAGAGAA+AGG | + | chr4.4:28851577-28851596 | MS.gene56426:CDS | 50.0% | |
| ! | CCTGAACGTCTTCGCCTTTT+AGG | - | chr4.4:28850869-28850888 | None:intergenic | 50.0% |
| ! | GGAGGTGGGTCTTATGTCTT+TGG | + | chr4.4:28850646-28850665 | MS.gene56426:intron | 50.0% |
| ! | GGGTAGAGGAGCTTTTGTGA+AGG | - | chr4.4:28848923-28848942 | None:intergenic | 50.0% |
| !! | CCTTTAAGACCTAACGCTCG+GGG | - | chr4.4:28850780-28850799 | None:intergenic | 50.0% |
| !! | TAAAGGTGAAGGCGTTCCAG+TGG | + | chr4.4:28850794-28850813 | MS.gene56426:intron | 50.0% |
| AGGTTCAGCTCCAAGGACCT+CGG | - | chr4.4:28849893-28849912 | None:intergenic | 55.0% | |
| CCCCGAGCGTTAGGTCTTAA+AGG | + | chr4.4:28850777-28850796 | MS.gene56426:intron | 55.0% | |
| GTGCGACTTTGTGTGTGGGT+TGG | + | chr4.4:28850552-28850571 | MS.gene56426:intron | 55.0% | |
| ! | CCTTTTAGGCTTGACGCTCG+GGG | - | chr4.4:28850855-28850874 | None:intergenic | 55.0% |
| ! | CGCCTTTTAGGCTTGACGCT+CGG | - | chr4.4:28850857-28850876 | None:intergenic | 55.0% |
| ! | CTTTTAGGCTTGACGCTCGG+GGG | - | chr4.4:28850854-28850873 | None:intergenic | 55.0% |
| ! | GCCTTTTAGGCTTGACGCTC+GGG | - | chr4.4:28850856-28850875 | None:intergenic | 55.0% |
| AGAACACTGCCCCGAGCGTT+AGG | + | chr4.4:28850768-28850787 | MS.gene56426:intron | 60.0% | |
| CATAAGACCCACCTCCGCTG+AGG | - | chr4.4:28850642-28850661 | None:intergenic | 60.0% | |
| CCCCGAGCGTCAAGCCTAAA+AGG | + | chr4.4:28850852-28850871 | MS.gene56426:intron | 60.0% | |
| CTCCCACAACCGCCACTACA+AGG | + | chr4.4:28848953-28848972 | MS.gene56426:CDS | 60.0% | |
| ! | GCAAGGCATCTGCAAGCCCA+AGG | - | chr4.4:28849657-28849676 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.4 | gene | 28848897 | 28851611 | 28848897 | ID=MS.gene56426 |
| chr4.4 | mRNA | 28848897 | 28851611 | 28848897 | ID=MS.gene56426.t1;Parent=MS.gene56426 |
| chr4.4 | exon | 28848897 | 28848974 | 28848897 | ID=MS.gene56426.t1.exon1;Parent=MS.gene56426.t1 |
| chr4.4 | CDS | 28848897 | 28848974 | 28848897 | ID=cds.MS.gene56426.t1;Parent=MS.gene56426.t1 |
| chr4.4 | exon | 28849495 | 28849719 | 28849495 | ID=MS.gene56426.t1.exon2;Parent=MS.gene56426.t1 |
| chr4.4 | CDS | 28849495 | 28849719 | 28849495 | ID=cds.MS.gene56426.t1;Parent=MS.gene56426.t1 |
| chr4.4 | exon | 28849817 | 28849993 | 28849817 | ID=MS.gene56426.t1.exon3;Parent=MS.gene56426.t1 |
| chr4.4 | CDS | 28849817 | 28849993 | 28849817 | ID=cds.MS.gene56426.t1;Parent=MS.gene56426.t1 |
| chr4.4 | exon | 28850096 | 28850320 | 28850096 | ID=MS.gene56426.t1.exon4;Parent=MS.gene56426.t1 |
| chr4.4 | CDS | 28850096 | 28850320 | 28850096 | ID=cds.MS.gene56426.t1;Parent=MS.gene56426.t1 |
| chr4.4 | exon | 28850416 | 28850544 | 28850416 | ID=MS.gene56426.t1.exon5;Parent=MS.gene56426.t1 |
| chr4.4 | CDS | 28850416 | 28850544 | 28850416 | ID=cds.MS.gene56426.t1;Parent=MS.gene56426.t1 |
| chr4.4 | exon | 28851378 | 28851611 | 28851378 | ID=MS.gene56426.t1.exon6;Parent=MS.gene56426.t1 |
| chr4.4 | CDS | 28851378 | 28851611 | 28851378 | ID=cds.MS.gene56426.t1;Parent=MS.gene56426.t1 |
| Gene Sequence |
| Protein sequence |
