Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene067562.t1 | XP_003607882.1 | 98.8 | 325 | 4 | 0 | 1 | 325 | 31 | 355 | 2.80E-189 | 671 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene067562.t1 | P42620 | 48.0 | 321 | 150 | 4 | 7 | 321 | 15 | 324 | 1.2e-79 | 298.1 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene067562.t1 | G7JIT9 | 98.8 | 325 | 4 | 0 | 1 | 325 | 31 | 355 | 2.0e-189 | 671.0 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene006897 | MS.gene067562 | PPI |
| MS.gene89555 | MS.gene067562 | PPI |
| MS.gene23985 | MS.gene067562 | PPI |
| MS.gene036039 | MS.gene067562 | PPI |
| MS.gene56426 | MS.gene067562 | PPI |
| MS.gene038064 | MS.gene067562 | PPI |
| MS.gene067562 | MS.gene006897 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene067562.t1 | MTR_4g084040 | 98.769 | 325 | 4 | 0 | 1 | 325 | 31 | 355 | 0.0 | 671 |
| MS.gene067562.t1 | MTR_4g084040 | 98.769 | 325 | 4 | 0 | 1 | 325 | 1 | 325 | 0.0 | 669 |
| MS.gene067562.t1 | MTR_4g084040 | 98.824 | 255 | 3 | 0 | 71 | 325 | 5 | 259 | 0.0 | 527 |
| MS.gene067562.t1 | MTR_1g069575 | 42.598 | 331 | 167 | 6 | 1 | 325 | 86 | 399 | 4.21e-80 | 249 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene067562.t1 | AT4G19880 | 82.716 | 324 | 56 | 0 | 1 | 324 | 32 | 355 | 0.0 | 576 |
| MS.gene067562.t1 | AT4G19880 | 76.571 | 350 | 56 | 1 | 1 | 324 | 32 | 381 | 0.0 | 563 |
| MS.gene067562.t1 | AT5G45020 | 77.231 | 325 | 74 | 0 | 1 | 325 | 1 | 325 | 0.0 | 549 |
| MS.gene067562.t1 | AT5G45020 | 77.231 | 325 | 74 | 0 | 1 | 325 | 1 | 325 | 0.0 | 549 |
| MS.gene067562.t1 | AT5G44990 | 74.194 | 310 | 80 | 0 | 15 | 324 | 12 | 321 | 2.13e-178 | 497 |
| MS.gene067562.t1 | AT5G44990 | 74.194 | 310 | 80 | 0 | 15 | 324 | 12 | 321 | 2.13e-178 | 497 |
| MS.gene067562.t1 | AT4G19880 | 81.124 | 249 | 47 | 0 | 1 | 249 | 32 | 280 | 7.90e-153 | 431 |
| MS.gene067562.t1 | AT5G44990 | 76.170 | 235 | 56 | 0 | 15 | 249 | 12 | 246 | 4.78e-136 | 387 |
| MS.gene067562.t1 | AT5G44990 | 73.109 | 238 | 64 | 0 | 87 | 324 | 1 | 238 | 7.69e-132 | 376 |
| MS.gene067562.t1 | AT5G44000 | 40.615 | 325 | 182 | 3 | 1 | 321 | 70 | 387 | 4.05e-78 | 244 |
Find 72 sgRNAs with CRISPR-Local
Find 165 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ACTCATTAGTCTCATCAATT+TGG | 0.137715 | 4.1:-24051627 | None:intergenic |
| TTTCTGACTCAGCTGGAAAT+TGG | 0.186959 | 4.1:-24051004 | None:intergenic |
| TCAGCTGGAAATTGGGAATT+TGG | 0.189302 | 4.1:-24050996 | None:intergenic |
| ATCAGTCGGTCAAACCTATA+TGG | 0.237836 | 4.1:+24051212 | MS.gene067562:intron |
| TAAACACCGTTGTTTATATT+AGG | 0.242592 | 4.1:-24051658 | None:intergenic |
| TTGGTGTAATTGAAGATATT+TGG | 0.251559 | 4.1:-24052829 | None:intergenic |
| TAAAGAATCAGATGAATATA+TGG | 0.262799 | 4.1:+24051243 | MS.gene067562:CDS |
| CTCATTAGTCTCATCAATTT+GGG | 0.279709 | 4.1:-24051626 | None:intergenic |
| TACTGCTAATGCCAGGGATT+TGG | 0.306689 | 4.1:-24052861 | None:intergenic |
| CATCCTTCTATCAATCCATT+TGG | 0.329006 | 4.1:+24052925 | MS.gene067562:CDS |
| CATATAAAGTTGCATTACTA+TGG | 0.346462 | 4.1:+24052898 | MS.gene067562:CDS |
| AGGACCTCGGTATTCGATTC+AGG | 0.356321 | 4.1:-24051277 | None:intergenic |
| GGAGCAAAATAATCGATATT+TGG | 0.360002 | 4.1:-24052964 | None:intergenic |
| TTCTGACTCAGCTGGAAATT+GGG | 0.373113 | 4.1:-24051003 | None:intergenic |
| TCAGTCGGTCAAACCTATAT+GGG | 0.381315 | 4.1:+24051213 | MS.gene067562:intron |
| TCCATTTGGGATCGTTCCTA+TGG | 0.386731 | 4.1:+24052939 | MS.gene067562:CDS |
| AGGGATTTGGAAAATGTCTT+TGG | 0.388256 | 4.1:-24052848 | None:intergenic |
| TGACAAAGCCATCAGTTTCT+CGG | 0.393121 | 4.1:+24051100 | MS.gene067562:CDS |
| ACATATCATATGCTTGTCCT+TGG | 0.402858 | 4.1:+24051039 | MS.gene067562:CDS |
| TCTTTAGTTCTTCCCCATAT+AGG | 0.406552 | 4.1:-24051226 | None:intergenic |
| ATCCTTCTATCAATCCATTT+GGG | 0.416102 | 4.1:+24052926 | MS.gene067562:CDS |
| TTTGCTCCATTCAAAGGATC+AGG | 0.416369 | 4.1:-24051310 | None:intergenic |
| CATATCATATGCTTGTCCTT+GGG | 0.421419 | 4.1:+24051040 | MS.gene067562:CDS |
| AGTGTAACAAGAAGCTAATA+CGG | 0.426098 | 4.1:+24052800 | MS.gene067562:CDS |
| TGAAATGGTGCGATCATCAT+TGG | 0.429670 | 4.1:+24050905 | None:intergenic |
| TTGCTCCTCACGACAGAGAA+AGG | 0.440332 | 4.1:+24052980 | MS.gene067562:CDS |
| ATCCCAAATGGATTGATAGA+AGG | 0.448428 | 4.1:-24052928 | None:intergenic |
| AAGAGAATTATATGATGCTT+TGG | 0.452830 | 4.1:+24051821 | MS.gene067562:CDS |
| TGATATCTTTCTGACTCAGC+TGG | 0.460465 | 4.1:-24051011 | None:intergenic |
| TTCACTGTACTGCTAATGCC+AGG | 0.471207 | 4.1:-24052868 | None:intergenic |
| CCATTTGGGATCGTTCCTAT+GGG | 0.473199 | 4.1:+24052940 | MS.gene067562:CDS |
| AAAGAATCAGATGAATATAT+GGG | 0.478002 | 4.1:+24051244 | MS.gene067562:CDS |
| GAATCGAATACCGAGGTCCT+TGG | 0.488511 | 4.1:+24051280 | MS.gene067562:CDS |
| TAGATACATACATCAATGTA+TGG | 0.492426 | 4.1:-24051709 | None:intergenic |
| GATCCTTTGAAACGAATTGT+CGG | 0.500867 | 4.1:-24050974 | None:intergenic |
| AACAACGGTGTTTATAGATG+TGG | 0.501716 | 4.1:+24051667 | MS.gene067562:CDS |
| TAATCGATATTTGGCCCCAT+AGG | 0.502361 | 4.1:-24052955 | None:intergenic |
| CTTGCTTACTTGAAAATCAA+AGG | 0.511306 | 4.1:+24051074 | MS.gene067562:CDS |
| GCTGAACCTGATCCTTTGAA+TGG | 0.511651 | 4.1:+24051304 | MS.gene067562:CDS |
| TATTGCAGAAAATCCCATCT+TGG | 0.515927 | 4.1:+24051579 | MS.gene067562:CDS |
| ACACTCTTTGCTCCATTCAA+AGG | 0.520150 | 4.1:-24051316 | None:intergenic |
| ATTCCGACAATTCGTTTCAA+AGG | 0.521710 | 4.1:+24050971 | MS.gene067562:CDS |
| CCCATAGGAACGATCCCAAA+TGG | 0.534040 | 4.1:-24052940 | None:intergenic |
| ACAACGGTGTTTATAGATGT+GGG | 0.539714 | 4.1:+24051668 | MS.gene067562:CDS |
| AGAGGGATACAAGTCCAAGA+TGG | 0.539809 | 4.1:-24051593 | None:intergenic |
| ATGTGGGTTTGCAAAGAAGC+AGG | 0.547240 | 4.1:+24051684 | MS.gene067562:CDS |
| CACTCTCATTAGATTTGATG+AGG | 0.551830 | 4.1:+24051923 | MS.gene067562:CDS |
| AATTTGGGCTTGCAATTCAG+AGG | 0.553763 | 4.1:-24051611 | None:intergenic |
| TTTGATCTGCACAGATTCTG+TGG | 0.559429 | 4.1:+24051482 | MS.gene067562:intron |
| CATTAGCAGTACAGTGAACA+TGG | 0.560651 | 4.1:+24052873 | MS.gene067562:CDS |
| TTGATCTGCACAGATTCTGT+GGG | 0.561111 | 4.1:+24051483 | MS.gene067562:intron |
| GAGGGATACAAGTCCAAGAT+GGG | 0.566317 | 4.1:-24051592 | None:intergenic |
| AATCAGATGAATATATGGGA+TGG | 0.573584 | 4.1:+24051248 | MS.gene067562:CDS |
| AATTGTTAACAACGAGAGCT+CGG | 0.575907 | 4.1:+24051522 | MS.gene067562:CDS |
| GTGTAACAAGAAGCTAATAC+GGG | 0.576905 | 4.1:+24052801 | MS.gene067562:CDS |
| AGCAAGCAACGCTATATATG+TGG | 0.582625 | 4.1:+24051864 | MS.gene067562:CDS |
| AAGGATCAGGTTCAGCTCCA+AGG | 0.583231 | 4.1:-24051297 | None:intergenic |
| TGAAACGAATTGTCGGAATG+TGG | 0.585197 | 4.1:-24050967 | None:intergenic |
| ATTTGGGCTTGCAATTCAGA+GGG | 0.602774 | 4.1:-24051610 | None:intergenic |
| CCTACTAACCGAGAAACTGA+TGG | 0.608850 | 4.1:-24051108 | None:intergenic |
| ATTGGATGAGATATCAGACT+CGG | 0.620767 | 4.1:+24050923 | MS.gene067562:CDS |
| GCAAGGCATCTGCAAGCCCA+AGG | 0.621992 | 4.1:-24051056 | None:intergenic |
| ATTGCAAGTACAAACTACTC+CGG | 0.623947 | 4.1:+24051355 | MS.gene067562:CDS |
| TTGGATGAGATATCAGACTC+GGG | 0.645525 | 4.1:+24050924 | MS.gene067562:CDS |
| CAGTCGGTCAAACCTATATG+GGG | 0.647505 | 4.1:+24051214 | MS.gene067562:intron |
| AGGTTCAGCTCCAAGGACCT+CGG | 0.647588 | 4.1:-24051290 | None:intergenic |
| TGATGCTTTGGACAAATGCG+AGG | 0.659801 | 4.1:+24051833 | MS.gene067562:CDS |
| TCACTGTACTGCTAATGCCA+GGG | 0.660442 | 4.1:-24052867 | None:intergenic |
| GAAAACCTTTCTCTGTCGTG+AGG | 0.664094 | 4.1:-24052985 | None:intergenic |
| CATTTGGGATCGTTCCTATG+GGG | 0.667700 | 4.1:+24052941 | MS.gene067562:CDS |
| ATATATCCTAATATAAACAA+CGG | 0.698242 | 4.1:+24051652 | MS.gene067562:CDS |
| AAATTGATGAGACTAATGAG+TGG | 0.709533 | 4.1:+24051629 | MS.gene067562:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAAACATTAAAATTCAATA+TGG | + | chr4.1:24052407-24052426 | MS.gene067562:intron | 10.0% |
| !! | ATATATCCTAATATAAACAA+CGG | + | chr4.1:24051652-24051671 | MS.gene067562:CDS | 15.0% |
| !! | TTACTTAAAAATCAAAACAA+CGG | - | chr4.1:24052739-24052758 | None:intergenic | 15.0% |
| !!! | TATCTATTTTTTACTTTTTC+AGG | + | chr4.1:24051726-24051745 | MS.gene067562:intron | 15.0% |
| !! | AAAGAATCAGATGAATATAT+GGG | + | chr4.1:24051244-24051263 | MS.gene067562:CDS | 20.0% |
| !! | TAAAGAATCAGATGAATATA+TGG | + | chr4.1:24051243-24051262 | MS.gene067562:CDS | 20.0% |
| !! | TACTTAAAAATCAAAACAAC+GGG | - | chr4.1:24052738-24052757 | None:intergenic | 20.0% |
| !! | TTGATTTATTAATTCAGACA+AGG | - | chr4.1:24052019-24052038 | None:intergenic | 20.0% |
| !!! | TACATAACTTGTCAAAAATA+TGG | + | chr4.1:24052356-24052375 | MS.gene067562:intron | 20.0% |
| ! | AACAAAATGAGTCACAAAAT+AGG | - | chr4.1:24052702-24052721 | None:intergenic | 25.0% |
| ! | AAGAGAATTATATGATGCTT+TGG | + | chr4.1:24051821-24051840 | MS.gene067562:CDS | 25.0% |
| ! | AATTAATAAATCAACCTCAG+CGG | + | chr4.1:24052025-24052044 | MS.gene067562:intron | 25.0% |
| ! | ACAATAAAGCAATAACAAGA+AGG | - | chr4.1:24052507-24052526 | None:intergenic | 25.0% |
| ! | CATATAAAGTTGCATTACTA+TGG | + | chr4.1:24052898-24052917 | MS.gene067562:CDS | 25.0% |
| ! | TAAACACCGTTGTTTATATT+AGG | - | chr4.1:24051661-24051680 | None:intergenic | 25.0% |
| ! | TAAACCTGCAATTATAACAA+TGG | - | chr4.1:24052766-24052785 | None:intergenic | 25.0% |
| ! | TAGATACATACATCAATGTA+TGG | - | chr4.1:24051712-24051731 | None:intergenic | 25.0% |
| ! | TTAACTTATAGCATGCTAAA+GGG | + | chr4.1:24052549-24052568 | MS.gene067562:intron | 25.0% |
| ! | TTGCATGTTTAATAATCAGT+CGG | + | chr4.1:24051198-24051217 | MS.gene067562:intron | 25.0% |
| ! | TTGGTGTAATTGAAGATATT+TGG | - | chr4.1:24052832-24052851 | None:intergenic | 25.0% |
| !! | AGTTATGTAGTCTTAAAACT+AGG | - | chr4.1:24052345-24052364 | None:intergenic | 25.0% |
| !! | ATTGCTTTATTGTTATTCGA+TGG | + | chr4.1:24052514-24052533 | MS.gene067562:intron | 25.0% |
| !! | GTTATGTAGTCTTAAAACTA+GGG | - | chr4.1:24052344-24052363 | None:intergenic | 25.0% |
| !! | TTATGTAGTCTTAAAACTAG+GGG | - | chr4.1:24052343-24052362 | None:intergenic | 25.0% |
| !! | TTTAACTTATAGCATGCTAA+AGG | + | chr4.1:24052548-24052567 | MS.gene067562:intron | 25.0% |
| !!! | CATTTTTTTGATGGAATTAG+AGG | + | chr4.1:24052648-24052667 | MS.gene067562:intron | 25.0% |
| !!! | GCAATTTGGTTTTTGAAATT+CGG | - | chr4.1:24052319-24052338 | None:intergenic | 25.0% |
| !!! | TCTGTTCAACATTTTTTTGA+TGG | + | chr4.1:24052639-24052658 | MS.gene067562:intron | 25.0% |
| AAAAATCAAAACAACGGGAT+GGG | - | chr4.1:24052733-24052752 | None:intergenic | 30.0% | |
| AAATTGATGAGACTAATGAG+TGG | + | chr4.1:24051629-24051648 | MS.gene067562:CDS | 30.0% | |
| AAGGATATGTTTAGATAGAG+AGG | - | chr4.1:24052444-24052463 | None:intergenic | 30.0% | |
| AATAACAAGAAGGAAACACT+TGG | - | chr4.1:24052497-24052516 | None:intergenic | 30.0% | |
| AATCAGATGAATATATGGGA+TGG | + | chr4.1:24051248-24051267 | MS.gene067562:CDS | 30.0% | |
| AGTGTAACAAGAAGCTAATA+CGG | + | chr4.1:24052800-24052819 | MS.gene067562:CDS | 30.0% | |
| ATCCTTCTATCAATCCATTT+GGG | + | chr4.1:24052926-24052945 | MS.gene067562:CDS | 30.0% | |
| ATGTTATGTACCAAACTGTT+TGG | - | chr4.1:24052229-24052248 | None:intergenic | 30.0% | |
| CATGCAAGGTATAAAATTCT+AGG | - | chr4.1:24051185-24051204 | None:intergenic | 30.0% | |
| CTCTATCTAAACATATCCTT+AGG | + | chr4.1:24052444-24052463 | MS.gene067562:intron | 30.0% | |
| CTTGCTTACTTGAAAATCAA+AGG | + | chr4.1:24051074-24051093 | MS.gene067562:CDS | 30.0% | |
| GACTGATTATTAAACATGCA+AGG | - | chr4.1:24051199-24051218 | None:intergenic | 30.0% | |
| GGAGCAAAATAATCGATATT+TGG | - | chr4.1:24052967-24052986 | None:intergenic | 30.0% | |
| TAAAAATCAAAACAACGGGA+TGG | - | chr4.1:24052734-24052753 | None:intergenic | 30.0% | |
| TAACTTATAGCATGCTAAAG+GGG | + | chr4.1:24052550-24052569 | MS.gene067562:intron | 30.0% | |
| TACTCCCAAATATCAAGAAT+AGG | - | chr4.1:24051981-24052000 | None:intergenic | 30.0% | |
| TATGTTTAGATAGAGAGGTT+TGG | - | chr4.1:24052439-24052458 | None:intergenic | 30.0% | |
| TTCTAATCTCATTCTCTGAA+TGG | - | chr4.1:24052073-24052092 | None:intergenic | 30.0% | |
| ! | ACTCATTAGTCTCATCAATT+TGG | - | chr4.1:24051630-24051649 | None:intergenic | 30.0% |
| ! | AGCATTTGAAACTGTTCATT+TGG | + | chr4.1:24051781-24051800 | MS.gene067562:intron | 30.0% |
| ! | CTCATTAGTCTCATCAATTT+GGG | - | chr4.1:24051629-24051648 | None:intergenic | 30.0% |
| !! | ATTCTAAAGCAAAAACCTAC+AGG | - | chr4.1:24051394-24051413 | None:intergenic | 30.0% |
| !!! | CTTTGATTTTCAAGTAAGCA+AGG | - | chr4.1:24051076-24051095 | None:intergenic | 30.0% |
| !!! | TGTAGGTTTTTGCTTTAGAA+TGG | + | chr4.1:24051393-24051412 | MS.gene067562:intron | 30.0% |
| AACAACGGTGTTTATAGATG+TGG | + | chr4.1:24051667-24051686 | MS.gene067562:CDS | 35.0% | |
| AATTGTTAACAACGAGAGCT+CGG | + | chr4.1:24051522-24051541 | MS.gene067562:CDS | 35.0% | |
| ACAACGGTGTTTATAGATGT+GGG | + | chr4.1:24051668-24051687 | MS.gene067562:CDS | 35.0% | |
| ACATATCATATGCTTGTCCT+TGG | + | chr4.1:24051039-24051058 | MS.gene067562:CDS | 35.0% | |
| AGGGATTTGGAAAATGTCTT+TGG | - | chr4.1:24052851-24052870 | None:intergenic | 35.0% | |
| ATTCCGACAATTCGTTTCAA+AGG | + | chr4.1:24050971-24050990 | MS.gene067562:CDS | 35.0% | |
| ATTGCAAGTACAAACTACTC+CGG | + | chr4.1:24051355-24051374 | MS.gene067562:CDS | 35.0% | |
| ATTGGATGAGATATCAGACT+CGG | + | chr4.1:24050923-24050942 | MS.gene067562:CDS | 35.0% | |
| CACTCTCATTAGATTTGATG+AGG | + | chr4.1:24051923-24051942 | MS.gene067562:CDS | 35.0% | |
| CATATCATATGCTTGTCCTT+GGG | + | chr4.1:24051040-24051059 | MS.gene067562:CDS | 35.0% | |
| CATCCTTCTATCAATCCATT+TGG | + | chr4.1:24052925-24052944 | MS.gene067562:CDS | 35.0% | |
| GGCACCTATTCTTGATATTT+GGG | + | chr4.1:24051974-24051993 | MS.gene067562:intron | 35.0% | |
| GTGTAACAAGAAGCTAATAC+GGG | + | chr4.1:24052801-24052820 | MS.gene067562:CDS | 35.0% | |
| GTTATTCGATGGACACTTAA+TGG | + | chr4.1:24052525-24052544 | MS.gene067562:intron | 35.0% | |
| TAGAGGAACATACAAGAACT+GGG | + | chr4.1:24052665-24052684 | MS.gene067562:intron | 35.0% | |
| TATACCAGCAAAGGTTACTA+GGG | - | chr4.1:24052131-24052150 | None:intergenic | 35.0% | |
| TATCAAACTGTTTGAGCACT+CGG | - | chr4.1:24052296-24052315 | None:intergenic | 35.0% | |
| TATTGCAGAAAATCCCATCT+TGG | + | chr4.1:24051579-24051598 | MS.gene067562:CDS | 35.0% | |
| TTAGAGGAACATACAAGAAC+TGG | + | chr4.1:24052664-24052683 | MS.gene067562:intron | 35.0% | |
| TTCGCCATTGTTATAATTGC+AGG | + | chr4.1:24052759-24052778 | MS.gene067562:intron | 35.0% | |
| ! | AAAGACATTTTCCAAATCCC+TGG | + | chr4.1:24052850-24052869 | MS.gene067562:CDS | 35.0% |
| ! | AGTTTACTGATTAATGCCTG+TGG | - | chr4.1:24052472-24052491 | None:intergenic | 35.0% |
| ! | TACAGGAACAGTGAATTTTC+CGG | - | chr4.1:24051377-24051396 | None:intergenic | 35.0% |
| ! | TTAAAACTAGGGGTGCAATT+TGG | - | chr4.1:24052333-24052352 | None:intergenic | 35.0% |
| ! | TTTCTCGGTTAGTAGGTTTT+TGG | + | chr4.1:24051115-24051134 | MS.gene067562:intron | 35.0% |
| ! | TTTGGCTTAATATTTGCAGC+TGG | + | chr4.1:24051133-24051152 | MS.gene067562:intron | 35.0% |
| !! | ATCCCAAATGGATTGATAGA+AGG | - | chr4.1:24052931-24052950 | None:intergenic | 35.0% |
| !! | GATCCTTTGAAACGAATTGT+CGG | - | chr4.1:24050977-24050996 | None:intergenic | 35.0% |
| !! | TCTTTAGTTCTTCCCCATAT+AGG | - | chr4.1:24051229-24051248 | None:intergenic | 35.0% |
| AATTTGGGCTTGCAATTCAG+AGG | - | chr4.1:24051614-24051633 | None:intergenic | 40.0% | |
| ACACTCTTTGCTCCATTCAA+AGG | - | chr4.1:24051319-24051338 | None:intergenic | 40.0% | |
| AGAGGAACATACAAGAACTG+GGG | + | chr4.1:24052666-24052685 | MS.gene067562:intron | 40.0% | |
| AGCAAGCAACGCTATATATG+TGG | + | chr4.1:24051864-24051883 | MS.gene067562:CDS | 40.0% | |
| ATCAGTCGGTCAAACCTATA+TGG | + | chr4.1:24051212-24051231 | MS.gene067562:intron | 40.0% | |
| ATGACCAAGTATACCAGCAA+AGG | - | chr4.1:24052140-24052159 | None:intergenic | 40.0% | |
| ATTTGGGCTTGCAATTCAGA+GGG | - | chr4.1:24051613-24051632 | None:intergenic | 40.0% | |
| CATTAGCAGTACAGTGAACA+TGG | + | chr4.1:24052873-24052892 | MS.gene067562:CDS | 40.0% | |
| GGAAAATTCACTGTTCCTGT+AGG | + | chr4.1:24051376-24051395 | MS.gene067562:intron | 40.0% | |
| GGGCACCTATTCTTGATATT+TGG | + | chr4.1:24051973-24051992 | MS.gene067562:intron | 40.0% | |
| GTAACCTTTGCTGGTATACT+TGG | + | chr4.1:24052133-24052152 | MS.gene067562:intron | 40.0% | |
| GTATACCAGCAAAGGTTACT+AGG | - | chr4.1:24052132-24052151 | None:intergenic | 40.0% | |
| TAATAAATCAACCTCAGCGG+AGG | + | chr4.1:24052028-24052047 | MS.gene067562:intron | 40.0% | |
| TAATCGATATTTGGCCCCAT+AGG | - | chr4.1:24052958-24052977 | None:intergenic | 40.0% | |
| TAGATAGAGAGGTTTGGAGA+GGG | - | chr4.1:24052433-24052452 | None:intergenic | 40.0% | |
| TCAGCTGGAAATTGGGAATT+TGG | - | chr4.1:24050999-24051018 | None:intergenic | 40.0% | |
| TCAGTCGGTCAAACCTATAT+GGG | + | chr4.1:24051213-24051232 | MS.gene067562:intron | 40.0% | |
| TGAAACGAATTGTCGGAATG+TGG | - | chr4.1:24050970-24050989 | None:intergenic | 40.0% | |
| TGACAAAGCCATCAGTTTCT+CGG | + | chr4.1:24051100-24051119 | MS.gene067562:CDS | 40.0% | |
| TGATATCTTTCTGACTCAGC+TGG | - | chr4.1:24051014-24051033 | None:intergenic | 40.0% | |
| TTAGATAGAGAGGTTTGGAG+AGG | - | chr4.1:24052434-24052453 | None:intergenic | 40.0% | |
| TTCTGACTCAGCTGGAAATT+GGG | - | chr4.1:24051006-24051025 | None:intergenic | 40.0% | |
| TTGATCTGCACAGATTCTGT+GGG | + | chr4.1:24051483-24051502 | MS.gene067562:intron | 40.0% | |
| TTGGATGAGATATCAGACTC+GGG | + | chr4.1:24050924-24050943 | MS.gene067562:CDS | 40.0% | |
| TTTCTGACTCAGCTGGAAAT+TGG | - | chr4.1:24051007-24051026 | None:intergenic | 40.0% | |
| TTTGATCTGCACAGATTCTG+TGG | + | chr4.1:24051482-24051501 | MS.gene067562:intron | 40.0% | |
| TTTGCTCCATTCAAAGGATC+AGG | - | chr4.1:24051313-24051332 | None:intergenic | 40.0% | |
| ! | ATAGTGTGCGATTTTGTGTG+TGG | + | chr4.1:24051947-24051966 | MS.gene067562:intron | 40.0% |
| ! | TAGTGTGCGATTTTGTGTGT+GGG | + | chr4.1:24051948-24051967 | MS.gene067562:intron | 40.0% |
| ! | TTTTCCTGAATCGAATACCG+AGG | + | chr4.1:24051273-24051292 | MS.gene067562:CDS | 40.0% |
| !! | TAAAGGGGAAAGCTTTGAAG+TGG | + | chr4.1:24052565-24052584 | MS.gene067562:intron | 40.0% |
| AACATATCCTTAGGCACCAC+AGG | + | chr4.1:24052453-24052472 | MS.gene067562:intron | 45.0% | |
| ACTCAATCCTCTGATGGAGT+CGG | - | chr4.1:24052098-24052117 | None:intergenic | 45.0% | |
| AGAGGGATACAAGTCCAAGA+TGG | - | chr4.1:24051596-24051615 | None:intergenic | 45.0% | |
| AGTACCCTAGTAACCTTTGC+TGG | + | chr4.1:24052124-24052143 | MS.gene067562:intron | 45.0% | |
| ATGTGGGTTTGCAAAGAAGC+AGG | + | chr4.1:24051684-24051703 | MS.gene067562:CDS | 45.0% | |
| ATTAATGCCTGTGGTGCCTA+AGG | - | chr4.1:24052463-24052482 | None:intergenic | 45.0% | |
| CAGTCGGTCAAACCTATATG+GGG | + | chr4.1:24051214-24051233 | MS.gene067562:intron | 45.0% | |
| CCATCAGTTTCTCGGTTAGT+AGG | + | chr4.1:24051108-24051127 | MS.gene067562:intron | 45.0% | |
| CCTACTAACCGAGAAACTGA+TGG | - | chr4.1:24051111-24051130 | None:intergenic | 45.0% | |
| CGTTCAACTCAATCCTCTGA+TGG | - | chr4.1:24052104-24052123 | None:intergenic | 45.0% | |
| GAAAACCTTTCTCTGTCGTG+AGG | - | chr4.1:24052988-24053007 | None:intergenic | 45.0% | |
| GACTGAGTTGCCAAACAGTT+TGG | + | chr4.1:24052216-24052235 | MS.gene067562:intron | 45.0% | |
| GAGGGATACAAGTCCAAGAT+GGG | - | chr4.1:24051595-24051614 | None:intergenic | 45.0% | |
| GCGTTAGGTCTTAAAGGTGA+AGG | + | chr4.1:24052183-24052202 | MS.gene067562:intron | 45.0% | |
| GCTGAACCTGATCCTTTGAA+TGG | + | chr4.1:24051304-24051323 | MS.gene067562:CDS | 45.0% | |
| GTTCATTTGGTCCTTTGTGC+AGG | + | chr4.1:24051794-24051813 | MS.gene067562:intron | 45.0% | |
| TACTGCTAATGCCAGGGATT+TGG | - | chr4.1:24052864-24052883 | None:intergenic | 45.0% | |
| TCACTGTACTGCTAATGCCA+GGG | - | chr4.1:24052870-24052889 | None:intergenic | 45.0% | |
| TTCACTGTACTGCTAATGCC+AGG | - | chr4.1:24052871-24052890 | None:intergenic | 45.0% | |
| ! | CATTTGGGATCGTTCCTATG+GGG | + | chr4.1:24052941-24052960 | MS.gene067562:CDS | 45.0% |
| ! | CCATTTGGGATCGTTCCTAT+GGG | + | chr4.1:24052940-24052959 | MS.gene067562:CDS | 45.0% |
| ! | GAGGTGGGTCTTATGTCTTT+GGG | + | chr4.1:24052047-24052066 | MS.gene067562:intron | 45.0% |
| ! | TCCATTTGGGATCGTTCCTA+TGG | + | chr4.1:24052939-24052958 | MS.gene067562:CDS | 45.0% |
| ! | TGATGCTTTGGACAAATGCG+AGG | + | chr4.1:24051833-24051852 | MS.gene067562:CDS | 45.0% |
| ! | TGCGATTTTGTGTGTGGGTT+GGG | + | chr4.1:24051953-24051972 | MS.gene067562:intron | 45.0% |
| !! | ACCTTTAAGACCTAACGCTC+GGG | - | chr4.1:24052181-24052200 | None:intergenic | 45.0% |
| !! | CACCTTTAAGACCTAACGCT+CGG | - | chr4.1:24052182-24052201 | None:intergenic | 45.0% |
| AAATCAACCTCAGCGGAGGT+GGG | + | chr4.1:24052032-24052051 | MS.gene067562:intron | 50.0% | |
| AAGGATCAGGTTCAGCTCCA+AGG | - | chr4.1:24051300-24051319 | None:intergenic | 50.0% | |
| AGGACCTCGGTATTCGATTC+AGG | - | chr4.1:24051280-24051299 | None:intergenic | 50.0% | |
| CCCATAGGAACGATCCCAAA+TGG | - | chr4.1:24052943-24052962 | None:intergenic | 50.0% | |
| CCTAAAAGGCGAAGACGTTC+AGG | + | chr4.1:24052266-24052285 | MS.gene067562:intron | 50.0% | |
| GAATCGAATACCGAGGTCCT+TGG | + | chr4.1:24051280-24051299 | MS.gene067562:CDS | 50.0% | |
| TAAATCAACCTCAGCGGAGG+TGG | + | chr4.1:24052031-24052050 | MS.gene067562:intron | 50.0% | |
| TGTTTGGCAACTCAGTCCAC+TGG | - | chr4.1:24052213-24052232 | None:intergenic | 50.0% | |
| TTCTCTTGCAGCCTGCACAA+AGG | - | chr4.1:24051808-24051827 | None:intergenic | 50.0% | |
| TTGCTCCTCACGACAGAGAA+AGG | + | chr4.1:24052980-24052999 | MS.gene067562:CDS | 50.0% | |
| ! | CCTGAACGTCTTCGCCTTTT+AGG | - | chr4.1:24052269-24052288 | None:intergenic | 50.0% |
| ! | GGAGGTGGGTCTTATGTCTT+TGG | + | chr4.1:24052046-24052065 | MS.gene067562:intron | 50.0% |
| ! | GTGCGATTTTGTGTGTGGGT+TGG | + | chr4.1:24051952-24051971 | MS.gene067562:intron | 50.0% |
| ! | TAGAAGACCGACTCCATCAG+AGG | + | chr4.1:24052088-24052107 | MS.gene067562:intron | 50.0% |
| !! | CCTTTAAGACCTAACGCTCG+GGG | - | chr4.1:24052180-24052199 | None:intergenic | 50.0% |
| !! | TAAAGGTGAAGGCGTTCCAG+TGG | + | chr4.1:24052194-24052213 | MS.gene067562:intron | 50.0% |
| AGGTTCAGCTCCAAGGACCT+CGG | - | chr4.1:24051293-24051312 | None:intergenic | 55.0% | |
| CCCCGAGCGTTAGGTCTTAA+AGG | + | chr4.1:24052177-24052196 | MS.gene067562:intron | 55.0% | |
| ! | CCTTTTAGGCTTGACGCTCG+GGG | - | chr4.1:24052255-24052274 | None:intergenic | 55.0% |
| ! | CGCCTTTTAGGCTTGACGCT+CGG | - | chr4.1:24052257-24052276 | None:intergenic | 55.0% |
| ! | CTTTTAGGCTTGACGCTCGG+GGG | - | chr4.1:24052254-24052273 | None:intergenic | 55.0% |
| ! | GCCTTTTAGGCTTGACGCTC+GGG | - | chr4.1:24052256-24052275 | None:intergenic | 55.0% |
| AGAACACTGCCCCGAGCGTT+AGG | + | chr4.1:24052168-24052187 | MS.gene067562:intron | 60.0% | |
| CATAAGACCCACCTCCGCTG+AGG | - | chr4.1:24052042-24052061 | None:intergenic | 60.0% | |
| CCCCGAGCGTCAAGCCTAAA+AGG | + | chr4.1:24052252-24052271 | MS.gene067562:intron | 60.0% | |
| ! | GCAAGGCATCTGCAAGCCCA+AGG | - | chr4.1:24051059-24051078 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.1 | gene | 24050909 | 24053014 | 24050909 | ID=MS.gene067562 |
| chr4.1 | mRNA | 24050909 | 24053014 | 24050909 | ID=MS.gene067562.t1;Parent=MS.gene067562 |
| chr4.1 | exon | 24050909 | 24051121 | 24050909 | ID=MS.gene067562.t1.exon1;Parent=MS.gene067562.t1 |
| chr4.1 | CDS | 24050909 | 24051121 | 24050909 | ID=cds.MS.gene067562.t1;Parent=MS.gene067562.t1 |
| chr4.1 | exon | 24051217 | 24051393 | 24051217 | ID=MS.gene067562.t1.exon2;Parent=MS.gene067562.t1 |
| chr4.1 | CDS | 24051217 | 24051393 | 24051217 | ID=cds.MS.gene067562.t1;Parent=MS.gene067562.t1 |
| chr4.1 | exon | 24051496 | 24051720 | 24051496 | ID=MS.gene067562.t1.exon3;Parent=MS.gene067562.t1 |
| chr4.1 | CDS | 24051496 | 24051720 | 24051496 | ID=cds.MS.gene067562.t1;Parent=MS.gene067562.t1 |
| chr4.1 | exon | 24051816 | 24051944 | 24051816 | ID=MS.gene067562.t1.exon4;Parent=MS.gene067562.t1 |
| chr4.1 | CDS | 24051816 | 24051944 | 24051816 | ID=cds.MS.gene067562.t1;Parent=MS.gene067562.t1 |
| chr4.1 | exon | 24052781 | 24053014 | 24052781 | ID=MS.gene067562.t1.exon5;Parent=MS.gene067562.t1 |
| chr4.1 | CDS | 24052781 | 24053014 | 24052781 | ID=cds.MS.gene067562.t1;Parent=MS.gene067562.t1 |
| Gene Sequence |
| Protein sequence |
