AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene036251

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene036251.t1 MTR_4g102520 97.265 585 14 2 1 584 1 584 0.0 1188
MS.gene036251.t1 MTR_1g072740 98.131 535 9 1 1 535 1 534 0.0 1088
MS.gene036251.t1 MTR_8g467040 33.226 310 193 4 282 581 107 412 2.04e-51 182
MS.gene036251.t1 MTR_4g119620 27.964 329 210 10 270 584 6 321 2.53e-33 130
MS.gene036251.t1 MTR_1g072140 25.325 308 217 8 281 584 14 312 1.46e-29 119
MS.gene036251.t1 MTR_7g086360 26.730 318 220 9 268 581 32 340 2.70e-26 110
MS.gene036251.t1 MTR_8g092620 27.687 307 203 10 282 584 6 297 1.21e-24 104
MS.gene036251.t1 MTR_8g092620 24.514 257 147 8 283 496 47 299 1.85e-12 68.9
MS.gene036251.t1 MTR_4g104380 25.962 312 206 8 282 584 218 513 3.05e-24 107
MS.gene036251.t1 MTR_4g104380 33.019 106 65 3 273 374 289 392 8.17e-12 68.2
MS.gene036251.t1 MTR_8g092620 27.541 305 202 10 282 582 13 302 3.11e-23 101
MS.gene036251.t1 MTR_3g075400 26.471 306 214 8 281 584 212 508 3.48e-23 103
MS.gene036251.t1 MTR_2g436510 26.299 308 195 12 291 584 167 456 4.41e-19 90.9
MS.gene036251.t1 MTR_7g076230 26.132 287 188 9 292 560 367 647 5.80e-19 91.7
MS.gene036251.t1 MTR_8g092620 28.037 214 139 8 282 491 6 208 1.52e-16 79.7
MS.gene036251.t1 MTR_6g004040 29.825 171 111 6 285 453 92 255 1.58e-16 83.6
MS.gene036251.t1 MTR_6g004040 23.264 288 197 10 290 565 12 287 1.60e-14 77.4
MS.gene036251.t1 MTR_6g004040 24.868 189 135 4 396 584 31 212 3.51e-13 73.2
MS.gene036251.t1 MTR_6g004040 31.538 130 80 4 284 410 133 256 2.34e-11 67.0
MS.gene036251.t1 MTR_1g069345 24.691 324 227 11 267 584 191 503 6.31e-16 81.3
MS.gene036251.t1 MTR_2g012630 29.545 176 114 7 285 458 91 258 1.74e-15 80.5
MS.gene036251.t1 MTR_2g012630 23.737 198 144 4 387 584 21 211 4.10e-13 73.2
MS.gene036251.t1 MTR_2g012630 22.867 293 198 10 287 565 8 286 1.97e-12 70.9
MS.gene036251.t1 MTR_1g054300 23.097 381 203 10 285 584 110 481 1.87e-15 79.7
MS.gene036251.t1 MTR_2g012630 29.545 176 114 7 285 458 91 258 2.01e-15 80.5
MS.gene036251.t1 MTR_2g012630 23.737 198 144 4 387 584 21 211 5.42e-13 72.8
MS.gene036251.t1 MTR_2g012630 22.867 293 198 10 287 565 8 286 2.38e-12 70.5
MS.gene036251.t1 MTR_1g097140 25.329 304 204 14 287 584 73 359 3.64e-15 78.2
MS.gene036251.t1 MTR_5g090420 21.338 314 234 8 276 584 243 548 2.17e-14 76.6
MS.gene036251.t1 MTR_3g052220 23.824 319 217 11 283 584 202 511 2.61e-14 76.3
MS.gene036251.t1 MTR_3g116500 24.127 315 215 10 289 584 60 369 2.13e-13 72.4
MS.gene036251.t1 MTR_3g116500 26.222 225 150 7 373 584 38 259 8.20e-13 69.3
MS.gene036251.t1 MTR_8g106790 23.022 278 183 12 282 539 54 320 1.46e-12 69.3
MS.gene036251.t1 MTR_2g060520 21.429 322 228 8 283 584 115 431 6.12e-12 68.2
MS.gene036251.t1 MTR_4g123597 22.812 320 212 14 285 584 347 651 6.60e-12 68.9
MS.gene036251.t1 MTR_4g105700 21.639 305 212 11 298 584 316 611 9.01e-12 68.6
MS.gene036251.t1 MTR_1g034785 24.339 189 117 5 285 451 109 293 5.48e-11 65.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene036251.t1 AT1G10580 77.436 585 118 4 1 584 1 572 0.0 939
MS.gene036251.t1 AT5G54520 32.915 319 204 3 274 584 140 456 8.63e-55 192
MS.gene036251.t1 AT3G49660 25.321 312 215 9 281 584 11 312 1.86e-29 119
MS.gene036251.t1 AT3G49660 28.767 219 145 6 286 499 105 317 1.80e-25 107
MS.gene036251.t1 AT5G64730 27.508 309 201 11 282 584 6 297 7.41e-27 111
MS.gene036251.t1 AT4G15900 29.967 307 183 12 292 584 174 462 4.82e-26 112
MS.gene036251.t1 AT2G43770 26.460 291 206 7 291 578 50 335 1.25e-25 108
MS.gene036251.t1 AT4G02730 24.759 311 216 10 281 584 30 329 1.42e-24 105
MS.gene036251.t1 AT3G16650 28.990 307 185 13 292 584 168 455 6.96e-22 99.4
MS.gene036251.t1 AT5G50230 24.658 292 196 7 282 564 213 489 1.01e-19 93.2
MS.gene036251.t1 AT5G23430 23.256 301 200 12 287 578 9 287 1.55e-17 87.0
MS.gene036251.t1 AT5G23430 30.000 150 97 5 285 432 92 235 1.38e-14 77.8
MS.gene036251.t1 AT5G23430 25.000 192 131 4 396 584 31 212 5.12e-13 72.8
MS.gene036251.t1 AT5G23430 29.921 127 86 3 284 410 133 256 3.13e-11 67.0
MS.gene036251.t1 AT5G23430 23.256 301 200 12 287 578 9 287 1.67e-17 87.0
MS.gene036251.t1 AT5G23430 30.000 150 97 5 285 432 92 235 1.46e-14 77.4
MS.gene036251.t1 AT5G23430 25.000 192 131 4 396 584 31 212 5.12e-13 72.8
MS.gene036251.t1 AT5G23430 29.921 127 86 3 284 410 133 256 3.05e-11 67.0
MS.gene036251.t1 AT5G23430 23.256 301 200 12 287 578 9 287 1.67e-17 87.0
MS.gene036251.t1 AT5G23430 30.000 150 97 5 285 432 92 235 1.46e-14 77.4
MS.gene036251.t1 AT5G23430 25.000 192 131 4 396 584 31 212 5.12e-13 72.8
MS.gene036251.t1 AT5G23430 29.921 127 86 3 284 410 133 256 3.05e-11 67.0
MS.gene036251.t1 AT5G08560 23.453 307 222 8 282 584 262 559 1.76e-17 86.3
MS.gene036251.t1 AT5G08560 23.453 307 222 8 282 584 262 559 1.76e-17 86.3
MS.gene036251.t1 AT5G08560 23.453 307 222 8 282 584 262 559 1.76e-17 86.3
MS.gene036251.t1 AT5G08390 23.913 276 192 9 287 561 9 267 3.28e-17 85.9
MS.gene036251.t1 AT5G08390 32.000 150 94 5 285 432 92 235 2.04e-15 80.5
MS.gene036251.t1 AT5G08390 25.000 192 131 4 396 584 31 212 3.16e-13 73.2
MS.gene036251.t1 AT5G08390 32.283 127 83 3 284 410 133 256 1.98e-12 70.9
MS.gene036251.t1 AT1G61210 31.429 175 112 6 285 458 91 258 6.79e-17 85.1
MS.gene036251.t1 AT1G61210 25.714 280 182 10 292 567 13 270 6.87e-16 82.0
MS.gene036251.t1 AT1G61210 23.810 189 137 4 396 584 30 211 1.24e-11 68.2
MS.gene036251.t1 AT1G61210 31.008 129 82 5 284 410 132 255 1.37e-11 68.2
MS.gene036251.t1 AT1G61210 31.429 175 112 6 285 458 91 258 9.39e-17 84.7
MS.gene036251.t1 AT1G61210 25.714 280 182 10 292 567 13 270 1.23e-15 81.3
MS.gene036251.t1 AT1G61210 23.810 189 137 4 396 584 30 211 1.54e-11 68.2
MS.gene036251.t1 AT1G61210 31.008 129 82 5 284 410 132 255 1.73e-11 67.8
MS.gene036251.t1 AT1G61210 31.429 175 112 6 285 458 91 258 1.04e-16 84.7
MS.gene036251.t1 AT1G61210 25.714 280 182 10 292 567 13 270 1.23e-15 81.3
MS.gene036251.t1 AT1G61210 23.810 189 137 4 396 584 30 211 1.47e-11 68.2
MS.gene036251.t1 AT1G61210 31.008 129 82 5 284 410 132 255 1.76e-11 67.8
MS.gene036251.t1 AT1G15440 26.457 223 156 5 292 510 347 565 1.33e-16 84.0
MS.gene036251.t1 AT1G15440 26.457 223 156 5 292 510 387 605 1.84e-16 83.6
MS.gene036251.t1 AT5G43920 24.688 320 218 12 278 584 204 513 2.61e-16 82.4
MS.gene036251.t1 AT1G11160 24.742 291 195 9 287 565 8 286 5.69e-16 82.4
MS.gene036251.t1 AT1G11160 27.684 177 120 6 285 460 91 260 6.00e-15 79.0
MS.gene036251.t1 AT1G11160 25.397 189 134 4 396 584 30 211 1.25e-14 77.8
MS.gene036251.t1 AT1G11160 30.534 131 80 6 284 410 132 255 5.71e-11 66.2
MS.gene036251.t1 AT1G11160 24.742 291 195 9 287 565 8 286 5.94e-16 82.0
MS.gene036251.t1 AT1G11160 27.684 177 120 6 285 460 91 260 5.90e-15 79.0
MS.gene036251.t1 AT1G11160 25.397 189 134 4 396 584 30 211 1.20e-14 78.2
MS.gene036251.t1 AT1G11160 30.534 131 80 6 284 410 132 255 5.77e-11 66.2
MS.gene036251.t1 AT1G11160 24.742 291 195 9 287 565 8 286 6.05e-16 82.0
MS.gene036251.t1 AT1G11160 27.684 177 120 6 285 460 91 260 6.27e-15 79.0
MS.gene036251.t1 AT1G11160 25.397 189 134 4 396 584 30 211 1.15e-14 78.2
MS.gene036251.t1 AT1G11160 30.534 131 80 6 284 410 132 255 5.77e-11 66.2
MS.gene036251.t1 AT1G11160 27.684 177 120 6 285 460 49 218 5.64e-15 79.0
MS.gene036251.t1 AT1G11160 25.749 167 117 4 418 584 10 169 1.28e-12 71.6
MS.gene036251.t1 AT1G11160 24.803 254 168 8 324 565 2 244 1.19e-11 68.2
MS.gene036251.t1 AT1G11160 30.534 131 80 6 284 410 90 213 5.12e-11 66.2
MS.gene036251.t1 AT3G18130 24.907 269 175 11 291 539 60 321 5.69e-14 73.9
MS.gene036251.t1 AT3G18130 24.907 269 184 9 293 553 14 272 1.13e-11 66.6
MS.gene036251.t1 AT5G52820 24.497 298 204 10 291 584 191 471 2.01e-13 73.2
MS.gene036251.t1 AT1G48630 24.907 269 177 11 291 541 60 321 6.35e-13 70.5
MS.gene036251.t1 AT1G48630 24.542 273 188 9 289 553 10 272 6.59e-12 67.4
MS.gene036251.t1 AT2G33340 25.591 254 173 9 285 532 255 498 7.29e-13 71.6
MS.gene036251.t1 AT2G33340 25.591 254 173 9 285 532 255 498 7.29e-13 71.6
MS.gene036251.t1 AT5G16750 25.444 169 118 5 289 452 55 220 8.14e-13 72.0
MS.gene036251.t1 AT2G41500 23.228 254 179 7 335 584 252 493 1.49e-12 70.9
MS.gene036251.t1 AT2G41500 25.472 212 152 6 286 496 331 537 4.59e-12 69.3
MS.gene036251.t1 AT2G41500 23.228 254 179 7 335 584 252 493 1.49e-12 70.9
MS.gene036251.t1 AT2G41500 25.472 212 152 6 286 496 331 537 4.59e-12 69.3
MS.gene036251.t1 AT1G73720 24.451 319 214 12 283 584 201 509 3.77e-12 69.3
MS.gene036251.t1 AT3G21540 23.864 264 174 12 334 584 402 651 8.83e-12 68.9
MS.gene036251.t1 AT3G21540 27.094 203 134 8 303 498 26 221 5.53e-11 66.2
MS.gene036251.t1 AT1G79990 22.460 187 141 3 310 494 72 256 1.56e-11 67.8
MS.gene036251.t1 AT2G33340 27.011 174 117 6 285 453 255 423 1.57e-11 67.4
MS.gene036251.t1 AT1G18080 23.420 269 182 9 291 541 60 322 1.69e-11 66.2
MS.gene036251.t1 AT1G18080 22.695 282 161 7 289 562 10 242 1.85e-11 66.2
MS.gene036251.t1 AT1G79990 22.460 187 141 3 310 494 72 256 1.87e-11 67.8
MS.gene036251.t1 AT5G60940 23.125 320 224 9 282 584 111 425 4.21e-11 65.9
MS.gene036251.t1 AT5G60940 23.125 320 224 9 282 584 19 333 5.69e-11 64.7
MS.gene036251.t1 AT5G67320 23.464 358 202 14 281 575 252 600 6.33e-11 65.9

Find 155 sgRNAs with CRISPR-Local

Find 198 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GATGGGTTTGGAGAGGGTTT+TGG 0.192541 1.3:-52387547 None:intergenic
GTGAGGGTAAGTGTTGGTTC+TGG 0.241552 1.3:+52388990 MS.gene036251:CDS
ATCGAAATCACCGACGTAAT+TGG 0.272574 1.3:-52387787 None:intergenic
AGCATGGTGTCGTCGACTTT+GGG 0.273615 1.3:-52387504 None:intergenic
ACATTCTGTTTATCCTCATC+TGG 0.288775 1.3:-52388554 None:intergenic
TAAATGTATGAGGACTTATA+TGG 0.290113 1.3:+52388373 MS.gene036251:CDS
TTACTCGCCTTAGCATCTTT+TGG 0.297645 1.3:-52388197 None:intergenic
CAAGAGTATGATCAGCATTT+GGG 0.309524 1.3:+52388641 MS.gene036251:CDS
TGGATACTAAGGTTAAGATT+TGG 0.323671 1.3:+52388333 MS.gene036251:CDS
GGCGAAGAGAAGAGTGGTTT+TGG 0.323999 1.3:+52388086 MS.gene036251:CDS
TTGAGTTGGGTCGATGGGTT+TGG 0.324589 1.3:-52387559 None:intergenic
TCCCTCAGGGTATGGGAATA+TGG 0.330247 1.3:+52388728 MS.gene036251:CDS
TTGGCTCGCCGCTCAGAGTT+TGG 0.331077 1.3:+52388829 MS.gene036251:CDS
GGATACTAAGGTTAAGATTT+GGG 0.331103 1.3:+52388334 MS.gene036251:CDS
TGATAAGAATATTAAGTATT+GGG 0.340716 1.3:+52388463 MS.gene036251:CDS
GTTCAGTGGGATATGAATAC+TGG 0.343180 1.3:+52388608 MS.gene036251:CDS
CAGCTCTGGGCCCCGATTCA+AGG 0.351014 1.3:+52387612 MS.gene036251:CDS
TGAGGGTAAGTGTTGGTTCT+GGG 0.355149 1.3:+52388991 MS.gene036251:CDS
GAGCATGGTGTCGTCGACTT+TGG 0.357237 1.3:-52387505 None:intergenic
TTTGATTCTGTCTGCTGGTA+TGG 0.366420 1.3:+52388313 MS.gene036251:CDS
TCAAGAGTATGATCAGCATT+TGG 0.367145 1.3:+52388640 MS.gene036251:CDS
CGTTGTTGTCGTCGGTGTAT+TGG 0.369179 1.3:-52387404 None:intergenic
GCGGCGAGCCAATTGGCATT+GGG 0.372981 1.3:-52388818 None:intergenic
AACAACCATGCCTCAGAAGC+TGG 0.373950 1.3:-52387963 None:intergenic
TGGGGCATTCGAAAGCTGTT+AGG 0.375620 1.3:+52388393 MS.gene036251:CDS
CGAAAGGGGTTTCTGCGATT+AGG 0.375961 1.3:+52388270 MS.gene036251:CDS
TTTGCTGGACATATTGTTGC+TGG 0.377860 1.3:+52388911 MS.gene036251:CDS
GGTGAGATGGGCCTTGAATC+GGG 0.381007 1.3:-52387623 None:intergenic
CGATATAACCTGCCCCGTTT+CGG 0.387388 1.3:-52388489 None:intergenic
TTGTGCTATAAATAAGTATC+TGG 0.390504 1.3:-52388856 None:intergenic
ACCCTACCTACGACCAGCTC+TGG 0.397227 1.3:+52387598 MS.gene036251:CDS
CACTTCACCCCAATGCCAAT+TGG 0.397316 1.3:+52388810 MS.gene036251:CDS
GGGATTATCAAGGTAGGTCT+TGG 0.401179 1.3:+52388165 MS.gene036251:CDS
TTTGGGGTCGGCGACGGTTA+GGG 0.403402 1.3:-52387529 None:intergenic
GTAAGTGTTGGTTCTGGGAT+TGG 0.407813 1.3:+52388996 MS.gene036251:CDS
CTTGAATCGGGGCCCAGAGC+TGG 0.409734 1.3:-52387611 None:intergenic
GCAAAGTAGCGACGTGTGGC+TGG 0.411956 1.3:+52389098 MS.gene036251:CDS
AGCGGCGAGCCAATTGGCAT+TGG 0.418827 1.3:-52388819 None:intergenic
GGGTGAGATGGGCCTTGAAT+CGG 0.419829 1.3:-52387624 None:intergenic
ATGATAAGAATATTAAGTAT+TGG 0.420715 1.3:+52388462 MS.gene036251:CDS
AGAATCAAATGACCCGAATT+CGG 0.425737 1.3:-52388299 None:intergenic
TCTTCTTCTGTTCACGGTGT+GGG 0.426132 1.3:-52387848 None:intergenic
AAGTATTGGGATACCGAAAC+GGG 0.432545 1.3:+52388476 MS.gene036251:CDS
ATGACAAGTCCCTCAGGGTA+TGG 0.434880 1.3:+52388720 MS.gene036251:CDS
GAGTCCTTGGGCTGGGAAGA+AGG 0.437077 1.3:+52387998 MS.gene036251:CDS
CTCTTCTTCTGTTCACGGTG+TGG 0.437638 1.3:-52387849 None:intergenic
TCAATACTGGTAAATGTATG+AGG 0.444000 1.3:+52388363 MS.gene036251:CDS
CTTCGACGAAACCGAGTTTG+TGG 0.444127 1.3:-52387683 None:intergenic
GCCCAGAGCTGGTCGTAGGT+AGG 0.447192 1.3:-52387600 None:intergenic
GGGTTAAGCTTCACAACATA+AGG 0.453310 1.3:-52388533 None:intergenic
GGTCATTTGATTCTGTCTGC+TGG 0.457625 1.3:+52388308 MS.gene036251:CDS
AAATGTATGAGGACTTATAT+GGG 0.458158 1.3:+52388374 MS.gene036251:CDS
TGAAGAATAAGAAGAGTCCT+TGG 0.458759 1.3:+52387985 MS.gene036251:CDS
GAACGGGAAGGGAGGAGACG+AGG 0.460869 1.3:-52387474 None:intergenic
GTCTGCTGGTATGGATACTA+AGG 0.461762 1.3:+52388322 MS.gene036251:CDS
TGGGTCGATGGGTTTGGAGA+GGG 0.461924 1.3:-52387553 None:intergenic
GAGGAGCACGCGAAGAAGAA+AGG 0.463092 1.3:+52388065 MS.gene036251:CDS
TGGTTGCGAGTGGCATCCTC+TGG 0.463609 1.3:+52389069 MS.gene036251:CDS
GGCATTGGGGTGAAGTGAAA+TGG 0.465903 1.3:-52388804 None:intergenic
GGGCGGTGGAACGGGAAGGG+AGG 0.468929 1.3:-52387482 None:intergenic
TAGCGACGTGTGGCTGGGAC+GGG 0.469608 1.3:+52389104 MS.gene036251:CDS
AGGTGTTGAGTTGGGTCGAT+GGG 0.471106 1.3:-52387564 None:intergenic
CCCAGAGCTGGTCGTAGGTA+GGG 0.477469 1.3:-52387599 None:intergenic
GTCTAGATCGTTGTTGTCGT+CGG 0.478814 1.3:-52387412 None:intergenic
CTGATATACTTTATAACTAC+AGG 0.479452 1.3:-52388755 None:intergenic
TGTTGCTGGATATGCTTGTC+AGG 0.489525 1.3:+52388925 MS.gene036251:CDS
CCAGTGATGACAAGTCCCTC+AGG 0.489956 1.3:+52388714 MS.gene036251:CDS
AGGCGATAAGGTGTTGAGTT+GGG 0.492099 1.3:-52387572 None:intergenic
GGGGCATTCGAAAGCTGTTA+GGG 0.493324 1.3:+52388394 MS.gene036251:CDS
CATTCTGTTTATCCTCATCT+GGG 0.502022 1.3:-52388553 None:intergenic
CCCTACCTACGACCAGCTCT+GGG 0.505645 1.3:+52387599 MS.gene036251:CDS
CGAAGAGATTGGTACATACA+TGG 0.505690 1.3:+52388237 MS.gene036251:CDS
GCTAAACCGTCTTTAGCGTA+AGG 0.513178 1.3:-52387645 None:intergenic
ACTCTGAGCGGCGAGCCAAT+TGG 0.513719 1.3:-52388825 None:intergenic
TAAGTATTGGGATACCGAAA+CGG 0.518461 1.3:+52388475 MS.gene036251:CDS
CATGTATGTACCAATCTCTT+CGG 0.518553 1.3:-52388236 None:intergenic
ATCTCAAAACCCTAATTCAC+CGG 0.519645 1.3:+52387440 MS.gene036251:CDS
CAAAGTAGCGACGTGTGGCT+GGG 0.520964 1.3:+52389099 MS.gene036251:CDS
AGGTAGGGTTGAAGGCGATA+AGG 0.521290 1.3:-52387584 None:intergenic
TTGGGATACCGAAACGGGGC+AGG 0.523429 1.3:+52388481 MS.gene036251:CDS
GTAGCGACGTGTGGCTGGGA+CGG 0.525013 1.3:+52389103 MS.gene036251:CDS
GTTATATCGACTTTCTCCAC+TGG 0.528482 1.3:+52388503 MS.gene036251:CDS
TCTTTAGCGTAAGGGTGAGA+TGG 0.528553 1.3:-52387636 None:intergenic
GATTGAAAACCCAGCTTCTG+AGG 0.529050 1.3:+52387953 MS.gene036251:CDS
CTGGTCGTAGGTAGGGTTGA+AGG 0.530035 1.3:-52387592 None:intergenic
AAGGCGATAAGGTGTTGAGT+TGG 0.533837 1.3:-52387573 None:intergenic
CTGTTATATACCGAAGAGAT+TGG 0.537473 1.3:+52388226 MS.gene036251:CDS
CCTGAGGGACTTGTCATCAC+TGG 0.537996 1.3:-52388714 None:intergenic
TGATAAGAAGATTGTTCAGT+GGG 0.538924 1.3:+52388595 MS.gene036251:CDS
ATAAGAAGAGTCCTTGGGCT+GGG 0.539663 1.3:+52387991 MS.gene036251:CDS
ACAACCATGCCTCAGAAGCT+GGG 0.540280 1.3:-52387962 None:intergenic
CTTTAGCGTAAGGGTGAGAT+GGG 0.540886 1.3:-52387635 None:intergenic
TGTCACGAAGGCGTTACCAT+TGG 0.543297 1.3:+52389049 MS.gene036251:CDS
AAAACCCAGCTTCTGAGGCA+TGG 0.546170 1.3:+52387958 MS.gene036251:CDS
TTGGGTCGATGGGTTTGGAG+AGG 0.547307 1.3:-52387554 None:intergenic
CATGGAGTGGACATACGAAA+GGG 0.549842 1.3:+52388255 MS.gene036251:CDS
TGACAAGTCCCTCAGGGTAT+GGG 0.550285 1.3:+52388721 MS.gene036251:CDS
CCTTCCTTCTTCCCAGCCCA+AGG 0.553576 1.3:-52388002 None:intergenic
AAGAAAGGCGAAGAGAAGAG+TGG 0.555351 1.3:+52388080 MS.gene036251:CDS
AAGGTGTTGAGTTGGGTCGA+TGG 0.555828 1.3:-52387565 None:intergenic
TGCTGTTCATCGAAGAGGAA+AGG 0.559395 1.3:-52387720 None:intergenic
TGCGCCTCCAAAAGATGCTA+AGG 0.561249 1.3:+52388190 MS.gene036251:CDS
GGGACGGGTTGATAAAGTAC+TGG 0.561357 1.3:+52389119 MS.gene036251:CDS
GAAGAATAAGAAGAGTCCTT+GGG 0.563353 1.3:+52387986 MS.gene036251:CDS
CCTTGGGCTGGGAAGAAGGA+AGG 0.564772 1.3:+52388002 MS.gene036251:CDS
GCATGGTGTCGTCGACTTTG+GGG 0.565100 1.3:-52387503 None:intergenic
GGGAAGAAGGAAGGTTTACA+AGG 0.566983 1.3:+52388011 MS.gene036251:CDS
AATAAGAAGAGTCCTTGGGC+TGG 0.567302 1.3:+52387990 MS.gene036251:CDS
GACATGACAAAACGTCCATC+CGG 0.567963 1.3:-52388959 None:intergenic
TGTCATGTCGGGTGATGGTG+AGG 0.571408 1.3:+52388973 MS.gene036251:CDS
ATTGTTATCGACAAAAGTAA+TGG 0.571823 1.3:-52388675 None:intergenic
AAAGAGGAAAGGGATTATCA+AGG 0.572402 1.3:+52388155 MS.gene036251:CDS
CGGGAAGGGAGGAGACGAGG+TGG 0.573173 1.3:-52387471 None:intergenic
GTGAGATGGGCCTTGAATCG+GGG 0.578748 1.3:-52387622 None:intergenic
AACAACAACGAAGATGAAGA+TGG 0.585338 1.3:+52387924 MS.gene036251:CDS
CGGCGAGCCAATTGGCATTG+GGG 0.587352 1.3:-52388817 None:intergenic
GGCGACGGTTAGGGCGAGCA+TGG 0.589400 1.3:-52387520 None:intergenic
AAGAGTATGATCAGCATTTG+GGG 0.593826 1.3:+52388642 MS.gene036251:CDS
TTCAGTGGGATATGAATACT+GGG 0.594900 1.3:+52388609 MS.gene036251:CDS
TTATATCGACTTTCTCCACT+GGG 0.596005 1.3:+52388504 MS.gene036251:CDS
GCTACTTTGCTCTGTTCCAG+AGG 0.598337 1.3:-52389085 None:intergenic
AGATACTTATTTATAGCACA+AGG 0.600630 1.3:+52388858 MS.gene036251:CDS
GCTAAAGACGGTTTAGCACA+AGG 0.608053 1.3:+52387651 MS.gene036251:CDS
GCGTTACCATTGGTTGCGAG+TGG 0.608524 1.3:+52389059 MS.gene036251:CDS
AGGAAAGGGATTATCAAGGT+AGG 0.608842 1.3:+52388159 MS.gene036251:CDS
CTAAACCGTCTTTAGCGTAA+GGG 0.610141 1.3:-52387644 None:intergenic
ACATGGAGTGGACATACGAA+AGG 0.611220 1.3:+52388254 MS.gene036251:CDS
GTCATGTCGGGTGATGGTGA+GGG 0.625539 1.3:+52388974 MS.gene036251:CDS
CGGGGCCCAGAGCTGGTCGT+AGG 0.625795 1.3:-52387604 None:intergenic
ACCATATTCCCATACCCTGA+GGG 0.627603 1.3:-52388729 None:intergenic
CATGGTGTCGTCGACTTTGG+GGG 0.627690 1.3:-52387502 None:intergenic
CAGTGATGACAAGTCCCTCA+GGG 0.630201 1.3:+52388715 MS.gene036251:CDS
TCTCACCCTTACGCTAAAGA+CGG 0.631080 1.3:+52387639 MS.gene036251:CDS
AGGATGCCACTCGCAACCAA+TGG 0.631424 1.3:-52389065 None:intergenic
TGTTATGCTGTTCATCGAAG+AGG 0.631441 1.3:-52387725 None:intergenic
TTGGGGTGAAGTGAAATGGA+AGG 0.631463 1.3:-52388800 None:intergenic
AGATTGGTACATACATGGAG+TGG 0.644932 1.3:+52388242 MS.gene036251:CDS
CAGAGCAAAGTAGCGACGTG+TGG 0.656241 1.3:+52389094 MS.gene036251:CDS
GTGATAAGAAGATTGTTCAG+TGG 0.659340 1.3:+52388594 MS.gene036251:CDS
CCGACGTAATTGGAAGCAGA+CGG 0.664084 1.3:-52387777 None:intergenic
AATGTATGAGGACTTATATG+GGG 0.667045 1.3:+52388375 MS.gene036251:CDS
TGTGAAGCTTAACCCAGATG+AGG 0.669296 1.3:+52388541 MS.gene036251:CDS
GATACTTATTTATAGCACAA+GGG 0.672388 1.3:+52388859 MS.gene036251:CDS
GGTATGCGTAACCACAAACT+CGG 0.673398 1.3:+52387672 MS.gene036251:CDS
GTGATGGTGAGGGTAAGTGT+TGG 0.677988 1.3:+52388984 MS.gene036251:CDS
CTGGTTATCCAAACTCTGAG+CGG 0.682803 1.3:-52388837 None:intergenic
CCGTCTGCTTCCAATTACGT+CGG 0.687927 1.3:+52387777 MS.gene036251:CDS
ATGGAGTGGACATACGAAAG+GGG 0.691126 1.3:+52388256 MS.gene036251:CDS
AGAACTCTCAAGTGTCACGA+AGG 0.693137 1.3:+52389037 MS.gene036251:CDS
TACCATATTCCCATACCCTG+AGG 0.706671 1.3:-52388730 None:intergenic
GAAGGCATAGAATGCATGTG+TGG 0.724483 1.3:-52388782 None:intergenic
AACATAAGGAATCTTCCCAG+TGG 0.726027 1.3:-52388519 None:intergenic
AGATCAGAAGAAATACGCTG+AGG 0.737161 1.3:+52388046 MS.gene036251:CDS
AGTATTGGGATACCGAAACG+GGG 0.752897 1.3:+52388477 MS.gene036251:CDS
AGAGTATGATCAGCATTTGG+GGG 0.760214 1.3:+52388643 MS.gene036251:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATGATAAGAATATTAAGTAT+TGG + chr1.3:52388462-52388481 MS.gene036251:CDS 15.0%
!! TGATAAGAATATTAAGTATT+GGG + chr1.3:52388463-52388482 MS.gene036251:CDS 15.0%
!!! CATAACACCTTTTTAAAATT+CGG + chr1.3:52387741-52387760 MS.gene036251:CDS 20.0%
! AAATGTATGAGGACTTATAT+GGG + chr1.3:52388374-52388393 MS.gene036251:CDS 25.0%
! AGATACTTATTTATAGCACA+AGG + chr1.3:52388858-52388877 MS.gene036251:CDS 25.0%
! ATTGTTATCGACAAAAGTAA+TGG - chr1.3:52388678-52388697 None:intergenic 25.0%
! CTGATATACTTTATAACTAC+AGG - chr1.3:52388758-52388777 None:intergenic 25.0%
! GATACTTATTTATAGCACAA+GGG + chr1.3:52388859-52388878 MS.gene036251:CDS 25.0%
! TAAATGTATGAGGACTTATA+TGG + chr1.3:52388373-52388392 MS.gene036251:CDS 25.0%
! TTCAACTTAACAAAAAGAAG+AGG + chr1.3:52388888-52388907 MS.gene036251:CDS 25.0%
! TTGTGCTATAAATAAGTATC+TGG - chr1.3:52388859-52388878 None:intergenic 25.0%
!!! AAAGATAAGAGTACTTTTCA+TGG + chr1.3:52388131-52388150 MS.gene036251:CDS 25.0%
!!! AAGATAAGAGTACTTTTCAT+GGG + chr1.3:52388132-52388151 MS.gene036251:CDS 25.0%
!!! AGCATAACCGAATTTTAAAA+AGG - chr1.3:52387751-52387770 None:intergenic 25.0%
!!! GATATTTGTTTTACCAATGA+TGG + chr1.3:52388416-52388435 MS.gene036251:CDS 25.0%
!!! TTACTTTTGTCGATAACAAT+CGG + chr1.3:52388678-52388697 MS.gene036251:CDS 25.0%
AATGTATGAGGACTTATATG+GGG + chr1.3:52388375-52388394 MS.gene036251:CDS 30.0%
CAAAAACTTAGTTCCATCAT+TGG - chr1.3:52388432-52388451 None:intergenic 30.0%
GGATACTAAGGTTAAGATTT+GGG + chr1.3:52388334-52388353 MS.gene036251:CDS 30.0%
TCAATACTGGTAAATGTATG+AGG + chr1.3:52388363-52388382 MS.gene036251:CDS 30.0%
TGATAAGAAGATTGTTCAGT+GGG + chr1.3:52388595-52388614 MS.gene036251:CDS 30.0%
TGGATACTAAGGTTAAGATT+TGG + chr1.3:52388333-52388352 MS.gene036251:CDS 30.0%
! GGATAAACAGAATGTTTTGT+TGG + chr1.3:52388562-52388581 MS.gene036251:CDS 30.0%
! TTTTTCTCTTCTTCTGTTCA+CGG - chr1.3:52387857-52387876 None:intergenic 30.0%
!! ATTTGGGATGTTTTCAATAC+TGG + chr1.3:52388350-52388369 MS.gene036251:CDS 30.0%
!!! ATTAGGTTTTTTCCGAATTC+GGG + chr1.3:52388287-52388306 MS.gene036251:CDS 30.0%
!!! GATTAGGTTTTTTCCGAATT+CGG + chr1.3:52388286-52388305 MS.gene036251:CDS 30.0%
AAAGAGGAAAGGGATTATCA+AGG + chr1.3:52388155-52388174 MS.gene036251:CDS 35.0%
AACAAAAAGAAGAGGTTTGC+TGG + chr1.3:52388896-52388915 MS.gene036251:CDS 35.0%
AACAACAACGAAGATGAAGA+TGG + chr1.3:52387924-52387943 MS.gene036251:CDS 35.0%
ACATTCTGTTTATCCTCATC+TGG - chr1.3:52388557-52388576 None:intergenic 35.0%
AGAATCAAATGACCCGAATT+CGG - chr1.3:52388302-52388321 None:intergenic 35.0%
ATCTCAAAACCCTAATTCAC+CGG + chr1.3:52387440-52387459 MS.gene036251:CDS 35.0%
CATGTATGTACCAATCTCTT+CGG - chr1.3:52388239-52388258 None:intergenic 35.0%
CATTCTGTTTATCCTCATCT+GGG - chr1.3:52388556-52388575 None:intergenic 35.0%
CTGTTATATACCGAAGAGAT+TGG + chr1.3:52388226-52388245 MS.gene036251:CDS 35.0%
GAAGAATAAGAAGAGTCCTT+GGG + chr1.3:52387986-52388005 MS.gene036251:CDS 35.0%
GTGATAAGAAGATTGTTCAG+TGG + chr1.3:52388594-52388613 MS.gene036251:CDS 35.0%
TGAAGAATAAGAAGAGTCCT+TGG + chr1.3:52387985-52388004 MS.gene036251:CDS 35.0%
TTCAGTGGGATATGAATACT+GGG + chr1.3:52388609-52388628 MS.gene036251:CDS 35.0%
! AAGAGTATGATCAGCATTTG+GGG + chr1.3:52388642-52388661 MS.gene036251:CDS 35.0%
! CAAGAGTATGATCAGCATTT+GGG + chr1.3:52388641-52388660 MS.gene036251:CDS 35.0%
! GAGAATTTTCCGGTGAATTA+GGG - chr1.3:52387452-52387471 None:intergenic 35.0%
! TCAAGAGTATGATCAGCATT+TGG + chr1.3:52388640-52388659 MS.gene036251:CDS 35.0%
! TTTTCATGGGAAAGAGGAAA+GGG + chr1.3:52388145-52388164 MS.gene036251:CDS 35.0%
!! AAACAGAATGTTTTGTTGGC+TGG + chr1.3:52388566-52388585 MS.gene036251:CDS 35.0%
!! TAAGTATTGGGATACCGAAA+CGG + chr1.3:52388475-52388494 MS.gene036251:CDS 35.0%
!! TTATATCGACTTTCTCCACT+GGG + chr1.3:52388504-52388523 MS.gene036251:CDS 35.0%
!!! TTTTGGTGGTGAAAAAGTTG+AGG + chr1.3:52388103-52388122 MS.gene036251:CDS 35.0%
AACATAAGGAATCTTCCCAG+TGG - chr1.3:52388522-52388541 None:intergenic 40.0%
AGAGTATGATCAGCATTTGG+GGG + chr1.3:52388643-52388662 MS.gene036251:CDS 40.0%
AGATCAGAAGAAATACGCTG+AGG + chr1.3:52388046-52388065 MS.gene036251:CDS 40.0%
AGATTGGTACATACATGGAG+TGG + chr1.3:52388242-52388261 MS.gene036251:CDS 40.0%
AGGAAAGGGATTATCAAGGT+AGG + chr1.3:52388159-52388178 MS.gene036251:CDS 40.0%
ATCGAAATCACCGACGTAAT+TGG - chr1.3:52387790-52387809 None:intergenic 40.0%
CGAAGAGATTGGTACATACA+TGG + chr1.3:52388237-52388256 MS.gene036251:CDS 40.0%
CTAAACCGTCTTTAGCGTAA+GGG - chr1.3:52387647-52387666 None:intergenic 40.0%
GGGTTAAGCTTCACAACATA+AGG - chr1.3:52388536-52388555 None:intergenic 40.0%
GTTCAGTGGGATATGAATAC+TGG + chr1.3:52388608-52388627 MS.gene036251:CDS 40.0%
TGTTATGCTGTTCATCGAAG+AGG - chr1.3:52387728-52387747 None:intergenic 40.0%
TTTGATTCTGTCTGCTGGTA+TGG + chr1.3:52388313-52388332 MS.gene036251:CDS 40.0%
TTTGCTGGACATATTGTTGC+TGG + chr1.3:52388911-52388930 MS.gene036251:CDS 40.0%
! CTTTTCATGGGAAAGAGGAA+AGG + chr1.3:52388144-52388163 MS.gene036251:CDS 40.0%
! GAGTACTTTTCATGGGAAAG+AGG + chr1.3:52388139-52388158 MS.gene036251:CDS 40.0%
! GGAGAATTTTCCGGTGAATT+AGG - chr1.3:52387453-52387472 None:intergenic 40.0%
! TTACTCGCCTTAGCATCTTT+TGG - chr1.3:52388200-52388219 None:intergenic 40.0%
! TTGTCAGGTCAATTTTTCGC+CGG + chr1.3:52388940-52388959 MS.gene036251:CDS 40.0%
!! AAGTATTGGGATACCGAAAC+GGG + chr1.3:52388476-52388495 MS.gene036251:CDS 40.0%
!! GTTATATCGACTTTCTCCAC+TGG + chr1.3:52388503-52388522 MS.gene036251:CDS 40.0%
!!! GGAACTAAGTTTTTGAGTGC+TGG + chr1.3:52388437-52388456 MS.gene036251:CDS 40.0%
!!! GGTGAATTAGGGTTTTGAGA+TGG - chr1.3:52387441-52387460 None:intergenic 40.0%
AAGAAAGGCGAAGAGAAGAG+TGG + chr1.3:52388080-52388099 MS.gene036251:CDS 45.0%
AATAAGAAGAGTCCTTGGGC+TGG + chr1.3:52387990-52388009 MS.gene036251:CDS 45.0%
ACATGGAGTGGACATACGAA+AGG + chr1.3:52388254-52388273 MS.gene036251:CDS 45.0%
ACCATATTCCCATACCCTGA+GGG - chr1.3:52388732-52388751 None:intergenic 45.0%
AGAACTCTCAAGTGTCACGA+AGG + chr1.3:52389037-52389056 MS.gene036251:CDS 45.0%
ATAAGAAGAGTCCTTGGGCT+GGG + chr1.3:52387991-52388010 MS.gene036251:CDS 45.0%
ATGGAGTGGACATACGAAAG+GGG + chr1.3:52388256-52388275 MS.gene036251:CDS 45.0%
CATGGAGTGGACATACGAAA+GGG + chr1.3:52388255-52388274 MS.gene036251:CDS 45.0%
CTGGTTATCCAAACTCTGAG+CGG - chr1.3:52388840-52388859 None:intergenic 45.0%
CTTTAGCGTAAGGGTGAGAT+GGG - chr1.3:52387638-52387657 None:intergenic 45.0%
GACATGACAAAACGTCCATC+CGG - chr1.3:52388962-52388981 None:intergenic 45.0%
GATTGAAAACCCAGCTTCTG+AGG + chr1.3:52387953-52387972 MS.gene036251:CDS 45.0%
GCTAAACCGTCTTTAGCGTA+AGG - chr1.3:52387648-52387667 None:intergenic 45.0%
GCTAAAGACGGTTTAGCACA+AGG + chr1.3:52387651-52387670 MS.gene036251:CDS 45.0%
GGGAAGAAGGAAGGTTTACA+AGG + chr1.3:52388011-52388030 MS.gene036251:CDS 45.0%
GGGATTATCAAGGTAGGTCT+TGG + chr1.3:52388165-52388184 MS.gene036251:CDS 45.0%
GGTATGCGTAACCACAAACT+CGG + chr1.3:52387672-52387691 MS.gene036251:CDS 45.0%
GGTCATTTGATTCTGTCTGC+TGG + chr1.3:52388308-52388327 MS.gene036251:CDS 45.0%
GTCTAGATCGTTGTTGTCGT+CGG - chr1.3:52387415-52387434 None:intergenic 45.0%
GTCTGCTGGTATGGATACTA+AGG + chr1.3:52388322-52388341 MS.gene036251:CDS 45.0%
TACCATATTCCCATACCCTG+AGG - chr1.3:52388733-52388752 None:intergenic 45.0%
TCTCACCCTTACGCTAAAGA+CGG + chr1.3:52387639-52387658 MS.gene036251:CDS 45.0%
TCTTCTTCTGTTCACGGTGT+GGG - chr1.3:52387851-52387870 None:intergenic 45.0%
TCTTTAGCGTAAGGGTGAGA+TGG - chr1.3:52387639-52387658 None:intergenic 45.0%
TGCTGTTCATCGAAGAGGAA+AGG - chr1.3:52387723-52387742 None:intergenic 45.0%
TGTGAAGCTTAACCCAGATG+AGG + chr1.3:52388541-52388560 MS.gene036251:CDS 45.0%
TGTTGCTGGATATGCTTGTC+AGG + chr1.3:52388925-52388944 MS.gene036251:CDS 45.0%
TTGGGGTGAAGTGAAATGGA+AGG - chr1.3:52388803-52388822 None:intergenic 45.0%
! AGACGAGGTGGAGAATTTTC+CGG - chr1.3:52387462-52387481 None:intergenic 45.0%
! AGTATTGGGATACCGAAACG+GGG + chr1.3:52388477-52388496 MS.gene036251:CDS 45.0%
! ATGGGTTTGGAGAGGGTTTT+GGG - chr1.3:52387549-52387568 None:intergenic 45.0%
! GAAGGCATAGAATGCATGTG+TGG - chr1.3:52388785-52388804 None:intergenic 45.0%
! GATGGACGTTTTGTCATGTC+GGG + chr1.3:52388962-52388981 MS.gene036251:CDS 45.0%
! GGATGGACGTTTTGTCATGT+CGG + chr1.3:52388961-52388980 MS.gene036251:CDS 45.0%
!! AAGGCGATAAGGTGTTGAGT+TGG - chr1.3:52387576-52387595 None:intergenic 45.0%
!! AGGCGATAAGGTGTTGAGTT+GGG - chr1.3:52387575-52387594 None:intergenic 45.0%
!! GTAAGTGTTGGTTCTGGGAT+TGG + chr1.3:52388996-52389015 MS.gene036251:CDS 45.0%
!! TGAGGGTAAGTGTTGGTTCT+GGG + chr1.3:52388991-52389010 MS.gene036251:CDS 45.0%
!!! GAAGAGAAGAGTGGTTTTGG+TGG + chr1.3:52388089-52388108 MS.gene036251:CDS 45.0%
AACAACCATGCCTCAGAAGC+TGG - chr1.3:52387966-52387985 None:intergenic 50.0%
ACAACCATGCCTCAGAAGCT+GGG - chr1.3:52387965-52387984 None:intergenic 50.0%
AGGTAGGGTTGAAGGCGATA+AGG - chr1.3:52387587-52387606 None:intergenic 50.0%
ATGACAAGTCCCTCAGGGTA+TGG + chr1.3:52388720-52388739 MS.gene036251:CDS 50.0%
CACTTCACCCCAATGCCAAT+TGG + chr1.3:52388810-52388829 MS.gene036251:CDS 50.0%
CAGTGATGACAAGTCCCTCA+GGG + chr1.3:52388715-52388734 MS.gene036251:CDS 50.0%
CCGACGTAATTGGAAGCAGA+CGG - chr1.3:52387780-52387799 None:intergenic 50.0%
CCGTCTGCTTCCAATTACGT+CGG + chr1.3:52387777-52387796 MS.gene036251:CDS 50.0%
CGAAAGGGGTTTCTGCGATT+AGG + chr1.3:52388270-52388289 MS.gene036251:CDS 50.0%
CGATATAACCTGCCCCGTTT+CGG - chr1.3:52388492-52388511 None:intergenic 50.0%
CGTTGTTGTCGTCGGTGTAT+TGG - chr1.3:52387407-52387426 None:intergenic 50.0%
CTCTTCTTCTGTTCACGGTG+TGG - chr1.3:52387852-52387871 None:intergenic 50.0%
CTTCGACGAAACCGAGTTTG+TGG - chr1.3:52387686-52387705 None:intergenic 50.0%
GTATGATCAGCATTTGGGGG+CGG + chr1.3:52388646-52388665 MS.gene036251:CDS 50.0%
TCCCTCAGGGTATGGGAATA+TGG + chr1.3:52388728-52388747 MS.gene036251:CDS 50.0%
TGACAAGTCCCTCAGGGTAT+GGG + chr1.3:52388721-52388740 MS.gene036251:CDS 50.0%
TGCGCCTCCAAAAGATGCTA+AGG + chr1.3:52388190-52388209 MS.gene036251:CDS 50.0%
! CAGGTCAATTTTTCGCCGGA+TGG + chr1.3:52388944-52388963 MS.gene036251:CDS 50.0%
! CGTTTTGTCATGTCGGGTGA+TGG + chr1.3:52388968-52388987 MS.gene036251:CDS 50.0%
! CTCGCCTTAGCATCTTTTGG+AGG - chr1.3:52388197-52388216 None:intergenic 50.0%
! GCTACTTTGCTCTGTTCCAG+AGG - chr1.3:52389088-52389107 None:intergenic 50.0%
! GGCATTGGGGTGAAGTGAAA+TGG - chr1.3:52388807-52388826 None:intergenic 50.0%
! GGCGAAGAGAAGAGTGGTTT+TGG + chr1.3:52388086-52388105 MS.gene036251:CDS 50.0%
! GGGGCATTCGAAAGCTGTTA+GGG + chr1.3:52388394-52388413 MS.gene036251:CDS 50.0%
! GTGATGGTGAGGGTAAGTGT+TGG + chr1.3:52388984-52389003 MS.gene036251:CDS 50.0%
! TGGGGCATTCGAAAGCTGTT+AGG + chr1.3:52388393-52388412 MS.gene036251:CDS 50.0%
! TGGGTTTGGAGAGGGTTTTG+GGG - chr1.3:52387548-52387567 None:intergenic 50.0%
!! AAAACCCAGCTTCTGAGGCA+TGG + chr1.3:52387958-52387977 MS.gene036251:CDS 50.0%
!! AAGGTGTTGAGTTGGGTCGA+TGG - chr1.3:52387568-52387587 None:intergenic 50.0%
!! AGCATGGTGTCGTCGACTTT+GGG - chr1.3:52387507-52387526 None:intergenic 50.0%
!! AGGTGTTGAGTTGGGTCGAT+GGG - chr1.3:52387567-52387586 None:intergenic 50.0%
!! GATGGGTTTGGAGAGGGTTT+TGG - chr1.3:52387550-52387569 None:intergenic 50.0%
!! GGGACGGGTTGATAAAGTAC+TGG + chr1.3:52389119-52389138 MS.gene036251:CDS 50.0%
!! GTGAGGGTAAGTGTTGGTTC+TGG + chr1.3:52388990-52389009 MS.gene036251:CDS 50.0%
!! TGTCACGAAGGCGTTACCAT+TGG + chr1.3:52389049-52389068 MS.gene036251:CDS 50.0%
!! TTGAGTTGGGTCGATGGGTT+TGG - chr1.3:52387562-52387581 None:intergenic 50.0%
!!! TTTGGAGAGGGTTTTGGGGT+CGG - chr1.3:52387544-52387563 None:intergenic 50.0%
AGGATGCCACTCGCAACCAA+TGG - chr1.3:52389068-52389087 None:intergenic 55.0%
CAAAGTAGCGACGTGTGGCT+GGG + chr1.3:52389099-52389118 MS.gene036251:CDS 55.0%
CAGAGCAAAGTAGCGACGTG+TGG + chr1.3:52389094-52389113 MS.gene036251:CDS 55.0%
CCAGTGATGACAAGTCCCTC+AGG + chr1.3:52388714-52388733 MS.gene036251:CDS 55.0%
CCTGAGGGACTTGTCATCAC+TGG - chr1.3:52388717-52388736 None:intergenic 55.0%
CTGGTCGTAGGTAGGGTTGA+AGG - chr1.3:52387595-52387614 None:intergenic 55.0%
GGGTGAGATGGGCCTTGAAT+CGG - chr1.3:52387627-52387646 None:intergenic 55.0%
GGTGAGATGGGCCTTGAATC+GGG - chr1.3:52387626-52387645 None:intergenic 55.0%
GTGAGATGGGCCTTGAATCG+GGG - chr1.3:52387625-52387644 None:intergenic 55.0%
! GAGGAGCACGCGAAGAAGAA+AGG + chr1.3:52388065-52388084 MS.gene036251:CDS 55.0%
! GCGTTACCATTGGTTGCGAG+TGG + chr1.3:52389059-52389078 MS.gene036251:CDS 55.0%
! GTCATGTCGGGTGATGGTGA+GGG + chr1.3:52388974-52388993 MS.gene036251:CDS 55.0%
! TGGGTCGATGGGTTTGGAGA+GGG - chr1.3:52387556-52387575 None:intergenic 55.0%
! TGTCATGTCGGGTGATGGTG+AGG + chr1.3:52388973-52388992 MS.gene036251:CDS 55.0%
! TTGGGTCGATGGGTTTGGAG+AGG - chr1.3:52387557-52387576 None:intergenic 55.0%
!! CATGGTGTCGTCGACTTTGG+GGG - chr1.3:52387505-52387524 None:intergenic 55.0%
!! GAGCATGGTGTCGTCGACTT+TGG - chr1.3:52387508-52387527 None:intergenic 55.0%
!! GCATGGTGTCGTCGACTTTG+GGG - chr1.3:52387506-52387525 None:intergenic 55.0%
ACCCTACCTACGACCAGCTC+TGG + chr1.3:52387598-52387617 MS.gene036251:CDS 60.0%
ACTCTGAGCGGCGAGCCAAT+TGG - chr1.3:52388828-52388847 None:intergenic 60.0%
AGCGGCGAGCCAATTGGCAT+TGG - chr1.3:52388822-52388841 None:intergenic 60.0%
CCCAGAGCTGGTCGTAGGTA+GGG - chr1.3:52387602-52387621 None:intergenic 60.0%
CCCTACCTACGACCAGCTCT+GGG + chr1.3:52387599-52387618 MS.gene036251:CDS 60.0%
CCTTCCTTCTTCCCAGCCCA+AGG - chr1.3:52388005-52388024 None:intergenic 60.0%
CGGCGAGCCAATTGGCATTG+GGG - chr1.3:52388820-52388839 None:intergenic 60.0%
GCAAAGTAGCGACGTGTGGC+TGG + chr1.3:52389098-52389117 MS.gene036251:CDS 60.0%
GCGGCGAGCCAATTGGCATT+GGG - chr1.3:52388821-52388840 None:intergenic 60.0%
TGGTTGCGAGTGGCATCCTC+TGG + chr1.3:52389069-52389088 MS.gene036251:CDS 60.0%
TTGGGATACCGAAACGGGGC+AGG + chr1.3:52388481-52388500 MS.gene036251:CDS 60.0%
! CCTTGGGCTGGGAAGAAGGA+AGG + chr1.3:52388002-52388021 MS.gene036251:CDS 60.0%
! GAGTCCTTGGGCTGGGAAGA+AGG + chr1.3:52387998-52388017 MS.gene036251:CDS 60.0%
! TTGGCTCGCCGCTCAGAGTT+TGG + chr1.3:52388829-52388848 MS.gene036251:CDS 60.0%
! TTTGGGGTCGGCGACGGTTA+GGG - chr1.3:52387532-52387551 None:intergenic 60.0%
!!! TTTTGGGGTCGGCGACGGTT+AGG - chr1.3:52387533-52387552 None:intergenic 60.0%
CTTGAATCGGGGCCCAGAGC+TGG - chr1.3:52387614-52387633 None:intergenic 65.0%
GAACGGGAAGGGAGGAGACG+AGG - chr1.3:52387477-52387496 None:intergenic 65.0%
GCCCAGAGCTGGTCGTAGGT+AGG - chr1.3:52387603-52387622 None:intergenic 65.0%
GTAGCGACGTGTGGCTGGGA+CGG + chr1.3:52389103-52389122 MS.gene036251:CDS 65.0%
TAGCGACGTGTGGCTGGGAC+GGG + chr1.3:52389104-52389123 MS.gene036251:CDS 65.0%
! CGACTTTGGGGGCGGTGGAA+CGG - chr1.3:52387494-52387513 None:intergenic 65.0%
! GACTTTGGGGGCGGTGGAAC+GGG - chr1.3:52387493-52387512 None:intergenic 65.0%
!! CAGCTCTGGGCCCCGATTCA+AGG + chr1.3:52387612-52387631 MS.gene036251:CDS 65.0%
!! GGTGTCGTCGACTTTGGGGG+CGG - chr1.3:52387502-52387521 None:intergenic 65.0%
!!! GAGGGTTTTGGGGTCGGCGA+CGG - chr1.3:52387538-52387557 None:intergenic 65.0%
CGGGAAGGGAGGAGACGAGG+TGG - chr1.3:52387474-52387493 None:intergenic 70.0%
GGCGACGGTTAGGGCGAGCA+TGG - chr1.3:52387523-52387542 None:intergenic 70.0%
TGGGGGCGGTGGAACGGGAA+GGG - chr1.3:52387488-52387507 None:intergenic 70.0%
TTGGGGGCGGTGGAACGGGA+AGG - chr1.3:52387489-52387508 None:intergenic 70.0%
!! GTCGTCGACTTTGGGGGCGG+TGG - chr1.3:52387499-52387518 None:intergenic 70.0%
CGGGGCCCAGAGCTGGTCGT+AGG - chr1.3:52387607-52387626 None:intergenic 75.0%
GGGCGGTGGAACGGGAAGGG+AGG - chr1.3:52387485-52387504 None:intergenic 75.0%


Chromosome Type Strat End Strand Name
chr1.3 gene 52387390 52389144 52387390 ID=MS.gene036251
chr1.3 mRNA 52387390 52389144 52387390 ID=MS.gene036251.t1;Parent=MS.gene036251
chr1.3 exon 52387390 52389144 52387390 ID=MS.gene036251.t1.exon1;Parent=MS.gene036251.t1
chr1.3 CDS 52387390 52389144 52387390 ID=cds.MS.gene036251.t1;Parent=MS.gene036251.t1
Gene Sequence

>MS.gene036251

ATGGATCTACTCAACCAATACACCGACGACAACAACGATCTAGACTCACCATCTCAAAACCCTAATTCACCGGAAAATTCTCCACCTCGTCTCCTCCCTTCCCGTTCCACCGCCCCCAAAGTCGACGACACCATGCTCGCCCTAACCGTCGCCGACCCCAAAACCCTCTCCAAACCCATCGACCCAACTCAACACCTTATCGCCTTCAACCCTACCTACGACCAGCTCTGGGCCCCGATTCAAGGCCCATCTCACCCTTACGCTAAAGACGGTTTAGCACAAGGTATGCGTAACCACAAACTCGGTTTCGTCGAAGACGCTAATATCGAACCTTTCCTCTTCGATGAACAGCATAACACCTTTTTAAAATTCGGTTATGCTGCTGATCCGTCTGCTTCCAATTACGTCGGTGATTTCGATGCTTTGCAGAAGAATAATGCTGCTTCTGTTTATAATATCCCACACCGTGAACAGAAGAAGAGAAAAATCGAATCTCTTAAGAAGAAAGAAGACAATGATAACGAAGAAGACAATAACAACAACGAAGATGAAGATGGTGTTGAGATTGAAAACCCAGCTTCTGAGGCATGGTTGTTGAAGAATAAGAAGAGTCCTTGGGCTGGGAAGAAGGAAGGTTTACAAGGAGAGTTAACTGAAGATCAGAAGAAATACGCTGAGGAGCACGCGAAGAAGAAAGGCGAAGAGAAGAGTGGTTTTGGTGGTGAAAAAGTTGAGGCTGTTAAAGATAAGAGTACTTTTCATGGGAAAGAGGAAAGGGATTATCAAGGTAGGTCTTGGATTGCGCCTCCAAAAGATGCTAAGGCGAGTAATGATCACTGTTATATACCGAAGAGATTGGTACATACATGGAGTGGACATACGAAAGGGGTTTCTGCGATTAGGTTTTTTCCGAATTCGGGTCATTTGATTCTGTCTGCTGGTATGGATACTAAGGTTAAGATTTGGGATGTTTTCAATACTGGTAAATGTATGAGGACTTATATGGGGCATTCGAAAGCTGTTAGGGATATTTGTTTTACCAATGATGGAACTAAGTTTTTGAGTGCTGGTTATGATAAGAATATTAAGTATTGGGATACCGAAACGGGGCAGGTTATATCGACTTTCTCCACTGGGAAGATTCCTTATGTTGTGAAGCTTAACCCAGATGAGGATAAACAGAATGTTTTGTTGGCTGGTATGAGTGATAAGAAGATTGTTCAGTGGGATATGAATACTGGGCAGATCACTCAAGAGTATGATCAGCATTTGGGGGCGGTGAATACCATTACTTTTGTCGATAACAATCGGAGATTTGTTACTTCCAGTGATGACAAGTCCCTCAGGGTATGGGAATATGGTATTCCTGTAGTTATAAAGTATATCAGTGAGCCACACATGCATTCTATGCCTTCCATTTCACTTCACCCCAATGCCAATTGGCTCGCCGCTCAGAGTTTGGATAACCAGATACTTATTTATAGCACAAGGGAGAAGTTTCAACTTAACAAAAAGAAGAGGTTTGCTGGACATATTGTTGCTGGATATGCTTGTCAGGTCAATTTTTCGCCGGATGGACGTTTTGTCATGTCGGGTGATGGTGAGGGTAAGTGTTGGTTCTGGGATTGGAAGAGTTGCAAAGTCTTTAGAACTCTCAAGTGTCACGAAGGCGTTACCATTGGTTGCGAGTGGCATCCTCTGGAACAGAGCAAAGTAGCGACGTGTGGCTGGGACGGGTTGATAAAGTACTGGTAA
Protein sequence

>MS.gene036251.t1

MDLLNQYTDDNNDLDSPSQNPNSPENSPPRLLPSRSTAPKVDDTMLALTVADPKTLSKPIDPTQHLIAFNPTYDQLWAPIQGPSHPYAKDGLAQGMRNHKLGFVEDANIEPFLFDEQHNTFLKFGYAADPSASNYVGDFDALQKNNAASVYNIPHREQKKRKIESLKKKEDNDNEEDNNNNEDEDGVEIENPASEAWLLKNKKSPWAGKKEGLQGELTEDQKKYAEEHAKKKGEEKSGFGGEKVEAVKDKSTFHGKEERDYQGRSWIAPPKDAKASNDHCYIPKRLVHTWSGHTKGVSAIRFFPNSGHLILSAGMDTKVKIWDVFNTGKCMRTYMGHSKAVRDICFTNDGTKFLSAGYDKNIKYWDTETGQVISTFSTGKIPYVVKLNPDEDKQNVLLAGMSDKKIVQWDMNTGQITQEYDQHLGAVNTITFVDNNRRFVTSSDDKSLRVWEYGIPVVIKYISEPHMHSMPSISLHPNANWLAAQSLDNQILIYSTREKFQLNKKKRFAGHIVAGYACQVNFSPDGRFVMSGDGEGKCWFWDWKSCKVFRTLKCHEGVTIGCEWHPLEQSKVATCGWDGLIKYW