Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene036560.t1 | RHN64189.1 | 96.8 | 954 | 20 | 3 | 1 | 954 | 1 | 943 | 0.00E+00 | 1813.9 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene036560.t1 | Q42736 | 84.2 | 885 | 138 | 1 | 69 | 951 | 69 | 953 | 0.0e+00 | 1507.3 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene036560.t1 | A0A396IF27 | 96.8 | 954 | 20 | 3 | 1 | 954 | 1 | 943 | 0.0e+00 | 1813.9 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene036560.t1 | MTR_4g118350 | 89.841 | 630 | 58 | 2 | 1 | 630 | 1 | 624 | 0.0 | 1156 |
| MS.gene036560.t1 | MTR_4g118355 | 91.438 | 292 | 25 | 0 | 660 | 951 | 1 | 292 | 0.0 | 558 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene036560.t1 | AT4G15530 | 78.238 | 942 | 194 | 4 | 20 | 951 | 12 | 952 | 0.0 | 1531 |
| MS.gene036560.t1 | AT4G15530 | 78.238 | 942 | 194 | 4 | 20 | 951 | 12 | 952 | 0.0 | 1531 |
| MS.gene036560.t1 | AT4G15530 | 78.238 | 942 | 194 | 4 | 20 | 951 | 19 | 959 | 0.0 | 1530 |
| MS.gene036560.t1 | AT4G15530 | 78.238 | 942 | 194 | 4 | 20 | 951 | 19 | 959 | 0.0 | 1530 |
| MS.gene036560.t1 | AT4G15530 | 82.644 | 870 | 150 | 1 | 82 | 951 | 3 | 871 | 0.0 | 1518 |
| MS.gene036560.t1 | AT4G15530 | 82.670 | 854 | 147 | 1 | 98 | 951 | 1 | 853 | 0.0 | 1489 |
| MS.gene036560.t1 | AT4G15530 | 82.670 | 854 | 147 | 1 | 98 | 951 | 1 | 853 | 0.0 | 1489 |
Find 243 sgRNAs with CRISPR-Local
Find 0 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATCCATGGTGTTTGGTAATA+TGG | 0.138638 | 8.3:-8152826 | MS.gene036560:CDS |
| TGAGTTGACCCACACCTTTC+TGG | 0.196040 | 8.3:+8148492 | None:intergenic |
| TGGTAAGTTACCTTCAAATT+TGG | 0.225158 | 8.3:+8148434 | None:intergenic |
| ACCGGGGAAAAGAAACTTTA+TGG | 0.230388 | 8.3:-8152759 | MS.gene036560:CDS |
| TTGTGGTGGGTGGTGTTGTT+GGG | 0.235923 | 8.3:+8156661 | None:intergenic |
| ACAAGGAAAGAGTGCAATTT+TGG | 0.237894 | 8.3:-8151688 | MS.gene036560:intron |
| CACCATGGATTGAATGTTTA+CGG | 0.283560 | 8.3:+8152839 | None:intergenic |
| GACATCAAGTGAGTTTAATA+AGG | 0.284688 | 8.3:-8149212 | MS.gene036560:CDS |
| AAACAGAGGGTGTTCACTTT+TGG | 0.289279 | 8.3:-8154587 | MS.gene036560:intron |
| ACTTTGTCCTTGTACTTAGA+TGG | 0.289385 | 8.3:+8151795 | None:intergenic |
| TTTGTGGTGGGTGGTGTTGT+TGG | 0.294486 | 8.3:+8156660 | None:intergenic |
| TATGACTATGCCTCTTACTA+TGG | 0.300775 | 8.3:+8156872 | None:intergenic |
| TACTGTAACCAAATGTCATT+TGG | 0.303402 | 8.3:+8148915 | None:intergenic |
| AATGAAATGGAGGCCTTTCT+TGG | 0.307194 | 8.3:-8154206 | MS.gene036560:CDS |
| TTCATGGTCTCTAAATCTTC+AGG | 0.312014 | 8.3:+8152515 | None:intergenic |
| TTGCATGCCAGATGCTTATA+AGG | 0.317357 | 8.3:-8152489 | MS.gene036560:CDS |
| ACTGGCTTGCCTGCATCCCC+TGG | 0.320313 | 8.3:-8151765 | MS.gene036560:CDS |
| TCCGGCTCTAAGTGATGATT+TGG | 0.321611 | 8.3:-8150669 | MS.gene036560:CDS |
| ATGTCTCATGTTCACCATTC+AGG | 0.321813 | 8.3:-8148231 | MS.gene036560:intron |
| ACACATCAACATCAGATAAT+AGG | 0.326515 | 8.3:-8156845 | MS.gene036560:CDS |
| ATTTGGGAACTTTCATGTCT+TGG | 0.328110 | 8.3:-8150652 | MS.gene036560:CDS |
| GGGAACAAGAATGATGTTAT+TGG | 0.328364 | 8.3:-8156813 | MS.gene036560:CDS |
| TGTCTTGGGCTGATGAAATA+AGG | 0.330420 | 8.3:-8150637 | MS.gene036560:CDS |
| ATGGACACAGTTCTTAATCT+TGG | 0.333394 | 8.3:-8153459 | MS.gene036560:CDS |
| GGTAATATGGGAAATACTTC+AGG | 0.336156 | 8.3:-8152813 | MS.gene036560:CDS |
| TCTAACAACCGGATTGTTAC+TGG | 0.340369 | 8.3:+8150118 | None:intergenic |
| GGGCTCTTCATTAAGCTATA+AGG | 0.343387 | 8.3:-8149160 | MS.gene036560:CDS |
| CTAGCTGCTATTGCATCTTC+AGG | 0.343456 | 8.3:+8150486 | None:intergenic |
| TTTGGGAACTTTCATGTCTT+GGG | 0.348932 | 8.3:-8150651 | MS.gene036560:CDS |
| CAAAACGGTGCGCAAGGAAT+TGG | 0.349390 | 8.3:-8150462 | MS.gene036560:CDS |
| GGATATTGAGTTCACTGTTC+AGG | 0.351127 | 8.3:-8152305 | MS.gene036560:CDS |
| AGACGTTTCTTAGACATGTT+TGG | 0.353523 | 8.3:-8153369 | MS.gene036560:CDS |
| GCTAATTCTAGTTGCTTCTT+CGG | 0.359838 | 8.3:+8152948 | None:intergenic |
| GCATCCCCTGGAGCTGCAGT+TGG | 0.361008 | 8.3:-8151753 | MS.gene036560:CDS |
| CCCTGGAGCTGCAGTTGGGC+AGG | 0.365744 | 8.3:-8151748 | MS.gene036560:CDS |
| TACAGTCCTTCCAGAGATAA+TGG | 0.367046 | 8.3:-8149520 | MS.gene036560:CDS |
| TGCTTCAGATGAAAGGATAA+AGG | 0.370547 | 8.3:-8150257 | MS.gene036560:CDS |
| GCCTGCATCTCAGTCAATTC+AGG | 0.371622 | 8.3:+8149588 | None:intergenic |
| CGCAAGGAATTGGACTTTGC+AGG | 0.375720 | 8.3:-8150452 | MS.gene036560:CDS |
| GACCTTACCCAAATGACATT+TGG | 0.377792 | 8.3:-8148923 | MS.gene036560:CDS |
| AGGAGCATTAATCAGATAAC+TGG | 0.379456 | 8.3:-8152876 | MS.gene036560:CDS |
| CTCCTATACTTATTAGCCCT+TGG | 0.384153 | 8.3:+8152894 | None:intergenic |
| CATCAAAATTTGCACAGAAA+AGG | 0.387242 | 8.3:-8148471 | MS.gene036560:CDS |
| AGACAAGTCCAGAGGATGTC+GGG | 0.387286 | 8.3:-8151009 | MS.gene036560:CDS |
| TGGTGATAGGTGGTTGTTAT+CGG | 0.391749 | 8.3:-8150776 | MS.gene036560:intron |
| ATTTCATTTAAATCACCTTC+AGG | 0.399860 | 8.3:+8150073 | None:intergenic |
| ACCTGCCCAACTGCAGCTCC+AGG | 0.399930 | 8.3:+8151747 | None:intergenic |
| AACATTCAATCCATGGTGTT+TGG | 0.400061 | 8.3:-8152834 | MS.gene036560:CDS |
| AATACTTACCAGGGACTTCA+TGG | 0.400828 | 8.3:+8154538 | None:intergenic |
| GGGAGCCAACTTAGCAGAAA+TGG | 0.403069 | 8.3:-8154360 | MS.gene036560:CDS |
| AGGATGTAGTTGCTGGAATC+AGG | 0.404755 | 8.3:-8152541 | MS.gene036560:CDS |
| TTAGCAGAAATGGCAACAAT+TGG | 0.405919 | 8.3:-8154350 | MS.gene036560:CDS |
| GTTGCATTCTTTGCTCAACT+TGG | 0.406680 | 8.3:-8148262 | MS.gene036560:CDS |
| CTCCTCCTCTCCGTGCGCTC+TGG | 0.407560 | 8.3:-8154167 | MS.gene036560:CDS |
| GGTGATAGGTGGTTGTTATC+GGG | 0.408230 | 8.3:-8150775 | MS.gene036560:intron |
| TCCATGGTGTTTGGTAATAT+GGG | 0.415863 | 8.3:-8152825 | MS.gene036560:CDS |
| TCCTATACTTATTAGCCCTT+GGG | 0.421836 | 8.3:+8152895 | None:intergenic |
| ATCAAAATTTGCACAGAAAA+GGG | 0.422930 | 8.3:-8148470 | MS.gene036560:CDS |
| GGTTCCAAATGAAAAGAAAT+CGG | 0.423220 | 8.3:+8148949 | None:intergenic |
| TGTTGCCATTTCTGCTAAGT+TGG | 0.425651 | 8.3:+8154355 | None:intergenic |
| CGGCTGTTGTAGCCCGTGGA+TGG | 0.428908 | 8.3:-8150931 | MS.gene036560:CDS |
| TTGAATGATGAAGTGGTTGC+TGG | 0.429675 | 8.3:-8153435 | MS.gene036560:CDS |
| ACTATGGAACTAACCTCAAA+TGG | 0.430135 | 8.3:+8148833 | None:intergenic |
| CATCCCCTGGAGCTGCAGTT+GGG | 0.430253 | 8.3:-8151752 | MS.gene036560:CDS |
| TACTTGGATATCAGAGCAAC+CGG | 0.431431 | 8.3:+8150892 | None:intergenic |
| TGTGGTGGGTGGTGTTGTTG+GGG | 0.432668 | 8.3:+8156662 | None:intergenic |
| CATTCCACATTCATTGTTTG+AGG | 0.433554 | 8.3:-8153198 | MS.gene036560:CDS |
| GATTTCCATGCCTGGAATGA+TGG | 0.438634 | 8.3:-8153478 | MS.gene036560:CDS |
| TGCTGCTAAACCAAATTTGA+AGG | 0.439110 | 8.3:-8148444 | MS.gene036560:intron |
| TCCTTGTGCATGCCATTGTT+CGG | 0.442810 | 8.3:+8151704 | None:intergenic |
| ATGGGAAATACTTCAGGAAC+TGG | 0.445089 | 8.3:-8152807 | MS.gene036560:CDS |
| TCAAGCTCCTTATAAGCATC+TGG | 0.448013 | 8.3:+8152482 | None:intergenic |
| ACTGTAACCAAATGTCATTT+GGG | 0.448913 | 8.3:+8148916 | None:intergenic |
| TTAATTGTAGTTGGGAGGAA+AGG | 0.450313 | 8.3:-8154381 | MS.gene036560:intron |
| CCGGGGAAAAGAAACTTTAT+GGG | 0.451789 | 8.3:-8152758 | MS.gene036560:CDS |
| ACTGCAGCTCCAGGGGATGC+AGG | 0.452972 | 8.3:+8151756 | None:intergenic |
| TCAAAATCTGATCTTTGATA+AGG | 0.453983 | 8.3:+8150169 | None:intergenic |
| GGAGTTTCTCATTAATGCTC+AGG | 0.458500 | 8.3:-8152736 | MS.gene036560:intron |
| TGATGAAGTGGTTGCTGGGT+TGG | 0.459454 | 8.3:-8153430 | MS.gene036560:CDS |
| ATGAAATGGAGGCCTTTCTT+GGG | 0.459941 | 8.3:-8154205 | MS.gene036560:CDS |
| ATCTCGTCCCACAAACCATC+TGG | 0.460176 | 8.3:+8154254 | None:intergenic |
| GAATATGTGGAGAGCATGGC+GGG | 0.461451 | 8.3:-8148297 | MS.gene036560:CDS |
| CACCAGAGCGCACGGAGAGG+AGG | 0.462927 | 8.3:+8154165 | None:intergenic |
| CTTCATGAATTTCTTCCTGA+AGG | 0.463137 | 8.3:-8150088 | MS.gene036560:CDS |
| GATGTTATTGGAGTTGGTGT+TGG | 0.465498 | 8.3:-8156801 | MS.gene036560:CDS |
| GAGTGTCTACCTCGAAGCTA+AGG | 0.466406 | 8.3:-8153084 | MS.gene036560:CDS |
| TTTGTTGATATAGTGAGTCC+AGG | 0.467007 | 8.3:+8154314 | None:intergenic |
| ACTGCTCAACCAGATCTTTG+AGG | 0.470873 | 8.3:+8153111 | None:intergenic |
| TTGTTGGGGTAAGAATAGTT+TGG | 0.470925 | 8.3:+8156676 | None:intergenic |
| GGCTGTGAGAATGATGATAT+TGG | 0.471813 | 8.3:-8150236 | MS.gene036560:CDS |
| GAGATGTCTACCATAGTAAG+AGG | 0.473678 | 8.3:-8156882 | MS.gene036560:CDS |
| GGCTGTTGTAGCCCGTGGAT+GGG | 0.474535 | 8.3:-8150930 | MS.gene036560:CDS |
| ATCTATCAGATTTCCATGCC+TGG | 0.475192 | 8.3:-8153486 | MS.gene036560:intron |
| GATTATCAGGTTGGAATATG+TGG | 0.476611 | 8.3:-8148310 | MS.gene036560:intron |
| TGAGAAAGTGTTCTCTGAGA+TGG | 0.479729 | 8.3:-8149181 | MS.gene036560:CDS |
| GTTATTGGAGTTGGTGTTGG+TGG | 0.480195 | 8.3:-8156798 | MS.gene036560:CDS |
| AAGAATGATGTTATTGGAGT+TGG | 0.480469 | 8.3:-8156807 | MS.gene036560:CDS |
| TCCTGAATTGACTGAGATGC+AGG | 0.481091 | 8.3:-8149589 | MS.gene036560:CDS |
| AGAACTGTGTCCATCATTCC+AGG | 0.483639 | 8.3:+8153468 | None:intergenic |
| TTGTTGATATAGTGAGTCCA+GGG | 0.483926 | 8.3:+8154315 | None:intergenic |
| AACCAGATCTTTGAGGTCGT+TGG | 0.484049 | 8.3:+8153118 | None:intergenic |
| ATAGTTTGGCAACGAATTGA+AGG | 0.484320 | 8.3:+8156690 | None:intergenic |
| TGGGGAAAGTGTTGTGTGTC+CGG | 0.484355 | 8.3:-8150911 | MS.gene036560:CDS |
| GGTGATTTAAATGAAATTGT+TGG | 0.491174 | 8.3:-8150067 | MS.gene036560:CDS |
| AGTGGAAAACGTACTGGTAA+AGG | 0.492046 | 8.3:-8152253 | MS.gene036560:CDS |
| CTGCCCAACTGCAGCTCCAG+GGG | 0.494906 | 8.3:+8151749 | None:intergenic |
| GAAAAGCTAAAGTATTCAAA+AGG | 0.495150 | 8.3:-8153167 | MS.gene036560:CDS |
| ACGAGTGGAACCATTATCTC+TGG | 0.495754 | 8.3:+8149510 | None:intergenic |
| AATCAGATAACTGGACTAGT+AGG | 0.496314 | 8.3:-8152867 | MS.gene036560:CDS |
| AGTGGAAGGAGTTGCAGTTA+CGG | 0.497327 | 8.3:-8156755 | MS.gene036560:CDS |
| CCGGCTCTAAGTGATGATTT+GGG | 0.497612 | 8.3:-8150668 | MS.gene036560:CDS |
| TTTGAAGTTAATCCCATGCT+TGG | 0.498251 | 8.3:-8149983 | MS.gene036560:CDS |
| TTCACTAGAAATCCAAGCAC+CGG | 0.500144 | 8.3:-8152777 | MS.gene036560:CDS |
| TAATTGTAGTTGGGAGGAAA+GGG | 0.500634 | 8.3:-8154380 | MS.gene036560:intron |
| AATCAAAATAGCTGTAGATA+TGG | 0.503273 | 8.3:-8152227 | MS.gene036560:CDS |
| TAGTAAGAGGCATAGTCATA+AGG | 0.503418 | 8.3:-8156869 | MS.gene036560:CDS |
| TTGTGGGACGAGATACTTGA+AGG | 0.503735 | 8.3:-8154245 | MS.gene036560:CDS |
| ATGTAATATCAGAAGGAGAA+TGG | 0.504643 | 8.3:-8150748 | MS.gene036560:CDS |
| GCAAAGAATGCAACAGAAGA+AGG | 0.504771 | 8.3:+8148271 | None:intergenic |
| GGAGAATGGATCTCGTTGAA+TGG | 0.505652 | 8.3:-8150734 | MS.gene036560:CDS |
| TAGGGCGAGGATGTAGTTGC+TGG | 0.507646 | 8.3:-8152548 | MS.gene036560:CDS |
| TCCACTCGTCGGTACACCTC+AGG | 0.509274 | 8.3:-8149496 | MS.gene036560:intron |
| AGAACCTACCAGATGGTTTG+TGG | 0.509472 | 8.3:-8154262 | MS.gene036560:CDS |
| TTTGCAGCATGATCCATTTG+AGG | 0.509567 | 8.3:-8148846 | MS.gene036560:intron |
| CTTCCTACATACCTATCCGC+AGG | 0.510814 | 8.3:-8148872 | MS.gene036560:CDS |
| TCTGCAACTAGTGCAGCTCT+TGG | 0.512618 | 8.3:+8149117 | None:intergenic |
| CCAAGTAAACGACCATGAAA+AGG | 0.516396 | 8.3:-8150876 | MS.gene036560:intron |
| TCCTAGTATCACCTCACCTG+TGG | 0.516407 | 8.3:+8150709 | None:intergenic |
| TGAGGTGATACTAGGAAAGC+AGG | 0.517519 | 8.3:-8150702 | MS.gene036560:CDS |
| CACAACACTTTCCCCATCCA+CGG | 0.517943 | 8.3:+8150918 | None:intergenic |
| AGCCAACGACCTCAAAGATC+TGG | 0.518191 | 8.3:-8153120 | MS.gene036560:CDS |
| AGCAGCTTGGAAAACGGCAC+GGG | 0.518749 | 8.3:+8149566 | None:intergenic |
| CTAACAACCGGATTGTTACT+GGG | 0.520228 | 8.3:+8150119 | None:intergenic |
| TCAATTCTTGGGATAGCCCA+AGG | 0.520836 | 8.3:-8152911 | MS.gene036560:CDS |
| CTCCGTGCGCTCTGGTGCTG+CGG | 0.520904 | 8.3:-8154159 | MS.gene036560:intron |
| TGAATGATGAAGTGGTTGCT+GGG | 0.521032 | 8.3:-8153434 | MS.gene036560:CDS |
| GAACCTACCAGATGGTTTGT+GGG | 0.523468 | 8.3:-8154261 | MS.gene036560:CDS |
| TCCACAGGTGAGGTGATACT+AGG | 0.524211 | 8.3:-8150710 | MS.gene036560:CDS |
| CTGCTGAGGCTGCCGAACAA+TGG | 0.524989 | 8.3:-8151716 | MS.gene036560:CDS |
| TGTCATTTGGGTAAGGTCGT+TGG | 0.526879 | 8.3:+8148928 | None:intergenic |
| TGAAATAGCAGCTTGGAAAA+CGG | 0.532518 | 8.3:+8149560 | None:intergenic |
| GAGCGCACGGAGAGGAGGAG+AGG | 0.535277 | 8.3:+8154170 | None:intergenic |
| GAAGTGGAGGATCTAACAAC+CGG | 0.535317 | 8.3:+8150107 | None:intergenic |
| ATCTCGTTGAATGGATCCAC+AGG | 0.538595 | 8.3:-8150725 | MS.gene036560:CDS |
| GAGAAAGTGTTCTCTGAGAT+GGG | 0.540276 | 8.3:-8149180 | MS.gene036560:CDS |
| GCAGCTCAATTTGCAGCGTA+AGG | 0.540463 | 8.3:-8148046 | None:intergenic |
| GCCCAAGGGCTAATAAGTAT+AGG | 0.543811 | 8.3:-8152896 | MS.gene036560:CDS |
| GGCCGTAAACATTCAATCCA+TGG | 0.544393 | 8.3:-8152841 | MS.gene036560:CDS |
| AACCAAATGTCATTTGGGTA+AGG | 0.544430 | 8.3:+8148921 | None:intergenic |
| AGCTGTAGATATGGTCAATG+AGG | 0.545269 | 8.3:-8152218 | MS.gene036560:CDS |
| CGTTTCTTAGACATGTTTGG+AGG | 0.547428 | 8.3:-8153366 | MS.gene036560:CDS |
| TACCGCAGCACCAGAGCGCA+CGG | 0.551109 | 8.3:+8154157 | None:intergenic |
| GAATCATTACAAGGATATGA+TGG | 0.551273 | 8.3:-8152438 | MS.gene036560:intron |
| CCTGCCCAACTGCAGCTCCA+GGG | 0.551694 | 8.3:+8151748 | None:intergenic |
| CCCAAATCATCACTTAGAGC+CGG | 0.554015 | 8.3:+8150668 | None:intergenic |
| GCTGTTGTAGCCCGTGGATG+GGG | 0.554034 | 8.3:-8150929 | MS.gene036560:CDS |
| TATTCGTTCTGCAATCAAGA+TGG | 0.555466 | 8.3:-8152185 | MS.gene036560:CDS |
| GCAATAGCAGCTAGACAAAA+CGG | 0.556137 | 8.3:-8150477 | MS.gene036560:CDS |
| AAAGCAGGCACTTTCTCCTC+CGG | 0.557013 | 8.3:-8150687 | MS.gene036560:CDS |
| AGCTGCACTAGTTGCAGATG+AGG | 0.560078 | 8.3:-8149112 | MS.gene036560:intron |
| ATGGTCTCCCAGTAACAATC+CGG | 0.560105 | 8.3:-8150126 | MS.gene036560:CDS |
| TGTCGAAGTGGAAAACGTAC+TGG | 0.564174 | 8.3:-8152259 | MS.gene036560:CDS |
| AAGGACAAAGTGGTTGCCAC+TGG | 0.566294 | 8.3:-8151783 | MS.gene036560:CDS |
| AAGAAGAAGAAATAGTCTCT+AGG | 0.566694 | 8.3:-8150018 | MS.gene036560:CDS |
| GCAGGTTGTGTTCACTGCTG+AGG | 0.568595 | 8.3:-8151730 | MS.gene036560:CDS |
| GCTGCTGCAAGTCTAGCAAT+CGG | 0.570121 | 8.3:+8148064 | None:intergenic |
| TTCTCCTCAAACAATGAATG+TGG | 0.573157 | 8.3:+8153194 | None:intergenic |
| TTTGGCAAAGGTAAAAGTGA+AGG | 0.573553 | 8.3:-8154569 | MS.gene036560:CDS |
| TCATACTAATCTGACCTGAA+TGG | 0.573986 | 8.3:+8148217 | None:intergenic |
| TGTGTCCATCATTCCAGGCA+TGG | 0.575045 | 8.3:+8153473 | None:intergenic |
| AAGGGAGAAAAGTTTCCCTC+AGG | 0.576363 | 8.3:-8153065 | MS.gene036560:intron |
| GCTAGACAAAACGGTGCGCA+AGG | 0.576960 | 8.3:-8150468 | MS.gene036560:CDS |
| GAGATAATGGTTCCACTCGT+CGG | 0.577658 | 8.3:-8149507 | MS.gene036560:CDS |
| TCAGGAAGAAATTCATGAAG+TGG | 0.578057 | 8.3:+8150091 | None:intergenic |
| CGATCAGCTCTTACACCCAC+AGG | 0.579532 | 8.3:-8152146 | MS.gene036560:intron |
| GCAGCCACGAAAACCAAGCA+TGG | 0.580063 | 8.3:+8149970 | None:intergenic |
| ATCCCTGCGGATAGGTATGT+AGG | 0.580219 | 8.3:+8148869 | None:intergenic |
| AAACAAGGCCATGAAGTCCC+TGG | 0.582226 | 8.3:-8154546 | MS.gene036560:intron |
| GCTGCAAAATCCCTGCGGAT+AGG | 0.585813 | 8.3:+8148861 | None:intergenic |
| TCTTCATTAAGCTATAAGGT+TGG | 0.586617 | 8.3:-8149156 | MS.gene036560:CDS |
| AAGTACAAAGGTGCAGTGGA+AGG | 0.586751 | 8.3:-8156769 | MS.gene036560:CDS |
| CTGTTCAGGAAAATAGATTG+TGG | 0.588451 | 8.3:-8152291 | MS.gene036560:CDS |
| GCTGTAGATATGGTCAATGA+GGG | 0.588831 | 8.3:-8152217 | MS.gene036560:CDS |
| AGGTAAAAGTGAAGGAAACA+AGG | 0.590908 | 8.3:-8154561 | MS.gene036560:CDS |
| GCTATTTCAGTGAGTAGCCA+TGG | 0.591843 | 8.3:-8149546 | MS.gene036560:CDS |
| TCACTAGAAATCCAAGCACC+GGG | 0.593403 | 8.3:-8152776 | MS.gene036560:CDS |
| GGTGAACTAACTTCTCAGAC+AGG | 0.596053 | 8.3:-8150046 | MS.gene036560:CDS |
| GAAGAAGTACAAAGGTGCAG+TGG | 0.596644 | 8.3:-8156773 | MS.gene036560:CDS |
| AGTGTCTACCTCGAAGCTAA+GGG | 0.598429 | 8.3:-8153083 | MS.gene036560:CDS |
| GATTCTAGAGAATCATTACA+AGG | 0.598884 | 8.3:-8152447 | MS.gene036560:CDS |
| GCCGAACAATGGCATGCACA+AGG | 0.599059 | 8.3:-8151705 | MS.gene036560:CDS |
| CAATTCTTGGGATAGCCCAA+GGG | 0.599592 | 8.3:-8152910 | MS.gene036560:CDS |
| GTTGGAATATGTGGAGAGCA+TGG | 0.600312 | 8.3:-8148301 | MS.gene036560:CDS |
| TCCCATATTACCAAACACCA+TGG | 0.602032 | 8.3:+8152824 | None:intergenic |
| TCTTGGATTGAATGATGAAG+TGG | 0.606505 | 8.3:-8153442 | MS.gene036560:CDS |
| AGATGCTTATAAGGAGCTTG+AGG | 0.608162 | 8.3:-8152480 | MS.gene036560:CDS |
| TACTCACTGAAATAGCAGCT+TGG | 0.609929 | 8.3:+8149553 | None:intergenic |
| ATCTAAGTACAAGGACAAAG+TGG | 0.610286 | 8.3:-8151793 | MS.gene036560:CDS |
| GAGACAAGTCCAGAGGATGT+CGG | 0.612900 | 8.3:-8151010 | MS.gene036560:CDS |
| GGAAGAAATTCATGAAGTGG+AGG | 0.614194 | 8.3:+8150094 | None:intergenic |
| GTGGAACCATTATCTCTGGA+AGG | 0.614560 | 8.3:+8149514 | None:intergenic |
| TGAGGATCCATCTAAGTACA+AGG | 0.615147 | 8.3:-8151802 | MS.gene036560:CDS |
| CAGCCACGAAAACCAAGCAT+GGG | 0.615672 | 8.3:+8149971 | None:intergenic |
| GTGATAGGTGGTTGTTATCG+GGG | 0.615910 | 8.3:-8150774 | MS.gene036560:intron |
| ACAACACTTTCCCCATCCAC+GGG | 0.616402 | 8.3:+8150919 | None:intergenic |
| AGGGGATGCAGGCAAGCCAG+TGG | 0.616690 | 8.3:+8151767 | None:intergenic |
| GGGGACAATGTAATATCAGA+AGG | 0.617589 | 8.3:-8150755 | MS.gene036560:CDS |
| GACAAGTCCAGAGGATGTCG+GGG | 0.618218 | 8.3:-8151008 | MS.gene036560:CDS |
| CATGCGGCTGTTGTAGCCCG+TGG | 0.619145 | 8.3:-8150935 | MS.gene036560:CDS |
| CTGCAGGTACTTGACCAGAA+AGG | 0.619999 | 8.3:-8148506 | MS.gene036560:intron |
| TAGCAGCTTGGAAAACGGCA+CGG | 0.620165 | 8.3:+8149565 | None:intergenic |
| GCCTGAGGTGTACCGACGAG+TGG | 0.621120 | 8.3:+8149495 | None:intergenic |
| TTCCTACATACCTATCCGCA+GGG | 0.630523 | 8.3:-8148871 | MS.gene036560:CDS |
| GTTGGCATCTTGACAGCTAG+AGG | 0.632776 | 8.3:-8150971 | MS.gene036560:CDS |
| GGTACTTGACCAGAAAGGTG+TGG | 0.634510 | 8.3:-8148501 | MS.gene036560:CDS |
| CAGCACCAGAGCGCACGGAG+AGG | 0.636063 | 8.3:+8154162 | None:intergenic |
| GTACTTGACCAGAAAGGTGT+GGG | 0.637870 | 8.3:-8148500 | MS.gene036560:CDS |
| TTGTGTTAATTGTAGTTGGG+AGG | 0.642786 | 8.3:-8154386 | MS.gene036560:intron |
| ACTTTGCAGGACAGAACACA+TGG | 0.645120 | 8.3:-8150439 | MS.gene036560:intron |
| CGTCCCACAAACCATCTGGT+AGG | 0.647588 | 8.3:+8154258 | None:intergenic |
| AAATCATCACTTAGAGCCGG+AGG | 0.647594 | 8.3:+8150671 | None:intergenic |
| TGATGAAATAAGGAATCTGA+AGG | 0.648348 | 8.3:-8150627 | MS.gene036560:intron |
| GGAATATGTGGAGAGCATGG+CGG | 0.649381 | 8.3:-8148298 | MS.gene036560:CDS |
| CTGGAAGGACTGTAATACCA+TGG | 0.650829 | 8.3:+8149529 | None:intergenic |
| TGTTGATATAGTGAGTCCAG+GGG | 0.656451 | 8.3:+8154316 | None:intergenic |
| AAGAGCTGATCGAGATGCTG+CGG | 0.656533 | 8.3:+8152157 | None:intergenic |
| AATGTAAAGAACCTACCAGA+TGG | 0.656784 | 8.3:-8154269 | MS.gene036560:CDS |
| GGCATCTTGACAGCTAGAGG+TGG | 0.670250 | 8.3:-8150968 | MS.gene036560:CDS |
| GATAACTGGACTAGTAGGCA+CGG | 0.671912 | 8.3:-8152862 | MS.gene036560:CDS |
| AAGGACAGAGACAAGTCCAG+AGG | 0.685240 | 8.3:-8151017 | MS.gene036560:CDS |
| TGGCTATTACGCAAGAACAG+AGG | 0.687603 | 8.3:-8150216 | MS.gene036560:CDS |
| GTTGATATAGTGAGTCCAGG+GGG | 0.692248 | 8.3:+8154317 | None:intergenic |
| GTTGAATGGATCCACAGGTG+AGG | 0.695332 | 8.3:-8150720 | MS.gene036560:CDS |
| TGGATGTTGCAATGTCGAAG+TGG | 0.695711 | 8.3:-8152271 | MS.gene036560:CDS |
| AGGTGGTATGACATCTCATG+CGG | 0.696074 | 8.3:-8150951 | MS.gene036560:CDS |
| CGGGGAAAAGAAACTTTATG+GGG | 0.696811 | 8.3:-8152757 | MS.gene036560:CDS |
| CTGTAGATATGGTCAATGAG+GGG | 0.699069 | 8.3:-8152216 | MS.gene036560:CDS |
| AATATGTGGAGAGCATGGCG+GGG | 0.702583 | 8.3:-8148296 | MS.gene036560:CDS |
| ACAAGTCCAGAGGATGTCGG+GGG | 0.714831 | 8.3:-8151007 | MS.gene036560:CDS |
| TGGTGGAAGAAGAAGTACAA+AGG | 0.720518 | 8.3:-8156781 | MS.gene036560:CDS |
| CACTAGAAATCCAAGCACCG+GGG | 0.725937 | 8.3:-8152775 | MS.gene036560:CDS |
| AGTTACGGCTTACATCAACA+TGG | 0.736612 | 8.3:-8156740 | MS.gene036560:CDS |
| ATCATGCTGCAAAATCCCTG+CGG | 0.765148 | 8.3:+8148856 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8.3 | gene | 8148048 | 8156901 | 8148048 | ID=MS.gene036560 |
| chr8.3 | mRNA | 8148048 | 8156901 | 8148048 | ID=MS.gene036560.t1;Parent=MS.gene036560 |
| chr8.3 | exon | 8156656 | 8156901 | 8156656 | ID=MS.gene036560.t1.exon1;Parent=MS.gene036560.t1 |
| chr8.3 | CDS | 8156656 | 8156901 | 8156656 | ID=cds.MS.gene036560.t1;Parent=MS.gene036560.t1 |
| chr8.3 | exon | 8154547 | 8154603 | 8154547 | ID=MS.gene036560.t1.exon2;Parent=MS.gene036560.t1 |
| chr8.3 | CDS | 8154547 | 8154603 | 8154547 | ID=cds.MS.gene036560.t1;Parent=MS.gene036560.t1 |
| chr8.3 | exon | 8154160 | 8154393 | 8154160 | ID=MS.gene036560.t1.exon3;Parent=MS.gene036560.t1 |
| chr8.3 | CDS | 8154160 | 8154393 | 8154160 | ID=cds.MS.gene036560.t1;Parent=MS.gene036560.t1 |
| chr8.3 | exon | 8153362 | 8153499 | 8153362 | ID=MS.gene036560.t1.exon4;Parent=MS.gene036560.t1 |
| chr8.3 | CDS | 8153362 | 8153499 | 8153362 | ID=cds.MS.gene036560.t1;Parent=MS.gene036560.t1 |
| chr8.3 | exon | 8153066 | 8153228 | 8153066 | ID=MS.gene036560.t1.exon5;Parent=MS.gene036560.t1 |
| chr8.3 | CDS | 8153066 | 8153228 | 8153066 | ID=cds.MS.gene036560.t1;Parent=MS.gene036560.t1 |
| chr8.3 | exon | 8152737 | 8152972 | 8152737 | ID=MS.gene036560.t1.exon6;Parent=MS.gene036560.t1 |
| chr8.3 | CDS | 8152737 | 8152972 | 8152737 | ID=cds.MS.gene036560.t1;Parent=MS.gene036560.t1 |
| chr8.3 | exon | 8152439 | 8152567 | 8152439 | ID=MS.gene036560.t1.exon7;Parent=MS.gene036560.t1 |
| chr8.3 | CDS | 8152439 | 8152567 | 8152439 | ID=cds.MS.gene036560.t1;Parent=MS.gene036560.t1 |
| chr8.3 | exon | 8152147 | 8152326 | 8152147 | ID=MS.gene036560.t1.exon8;Parent=MS.gene036560.t1 |
| chr8.3 | CDS | 8152147 | 8152326 | 8152147 | ID=cds.MS.gene036560.t1;Parent=MS.gene036560.t1 |
| chr8.3 | exon | 8151689 | 8151826 | 8151689 | ID=MS.gene036560.t1.exon9;Parent=MS.gene036560.t1 |
| chr8.3 | CDS | 8151689 | 8151826 | 8151689 | ID=cds.MS.gene036560.t1;Parent=MS.gene036560.t1 |
| chr8.3 | exon | 8150877 | 8151041 | 8150877 | ID=MS.gene036560.t1.exon10;Parent=MS.gene036560.t1 |
| chr8.3 | CDS | 8150877 | 8151041 | 8150877 | ID=cds.MS.gene036560.t1;Parent=MS.gene036560.t1 |
| chr8.3 | exon | 8150628 | 8150789 | 8150628 | ID=MS.gene036560.t1.exon11;Parent=MS.gene036560.t1 |
| chr8.3 | CDS | 8150628 | 8150789 | 8150628 | ID=cds.MS.gene036560.t1;Parent=MS.gene036560.t1 |
| chr8.3 | exon | 8150440 | 8150529 | 8150440 | ID=MS.gene036560.t1.exon12;Parent=MS.gene036560.t1 |
| chr8.3 | CDS | 8150440 | 8150529 | 8150440 | ID=cds.MS.gene036560.t1;Parent=MS.gene036560.t1 |
| chr8.3 | exon | 8149968 | 8150284 | 8149968 | ID=MS.gene036560.t1.exon13;Parent=MS.gene036560.t1 |
| chr8.3 | CDS | 8149968 | 8150284 | 8149968 | ID=cds.MS.gene036560.t1;Parent=MS.gene036560.t1 |
| chr8.3 | exon | 8149497 | 8149626 | 8149497 | ID=MS.gene036560.t1.exon14;Parent=MS.gene036560.t1 |
| chr8.3 | CDS | 8149497 | 8149626 | 8149497 | ID=cds.MS.gene036560.t1;Parent=MS.gene036560.t1 |
| chr8.3 | exon | 8149113 | 8149241 | 8149113 | ID=MS.gene036560.t1.exon15;Parent=MS.gene036560.t1 |
| chr8.3 | CDS | 8149113 | 8149241 | 8149113 | ID=cds.MS.gene036560.t1;Parent=MS.gene036560.t1 |
| chr8.3 | exon | 8148847 | 8148984 | 8148847 | ID=MS.gene036560.t1.exon16;Parent=MS.gene036560.t1 |
| chr8.3 | CDS | 8148847 | 8148984 | 8148847 | ID=cds.MS.gene036560.t1;Parent=MS.gene036560.t1 |
| chr8.3 | exon | 8148445 | 8148522 | 8148445 | ID=MS.gene036560.t1.exon17;Parent=MS.gene036560.t1 |
| chr8.3 | CDS | 8148445 | 8148522 | 8148445 | ID=cds.MS.gene036560.t1;Parent=MS.gene036560.t1 |
| chr8.3 | exon | 8148232 | 8148323 | 8148232 | ID=MS.gene036560.t1.exon18;Parent=MS.gene036560.t1 |
| chr8.3 | CDS | 8148232 | 8148323 | 8148232 | ID=cds.MS.gene036560.t1;Parent=MS.gene036560.t1 |
| chr8.3 | exon | 8148048 | 8148090 | 8148048 | ID=MS.gene036560.t1.exon19;Parent=MS.gene036560.t1 |
| chr8.3 | CDS | 8148048 | 8148090 | 8148048 | ID=cds.MS.gene036560.t1;Parent=MS.gene036560.t1 |
| Gene Sequence |
| Protein sequence |
