AlfalfaGEDB | MS.gene020725

M. sativa cultivar XinJiangDaYe / MS.gene020725

KEGG: -
GO: GO:0003674 GO:0005488 GO:0005515
PFAM: PF08263.15 PF12799.10 PF13855.9

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene020725.t1	AET00688.1	67.9	934	185	6	1	934	1	819	9.60E-235	823.5

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene020725.t1	Q9C637	34.4	270	160	4	26	283	36	300	1.5e-31	139.8

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene020725.t1	G7K4H2	67.9	934	185	6	1	934	1	819	6.9e-235	823.5

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
No data available in table

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PPI:

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Gene1	Gene2	Type
MS.gene00013	MS.gene020725	PPI
MS.gene000656	MS.gene020725	PPI
MS.gene000659	MS.gene020725	PPI
MS.gene000667	MS.gene020725	PPI
MS.gene001273	MS.gene020725	PPI
MS.gene003372	MS.gene020725	PPI
MS.gene003767	MS.gene020725	PPI
MS.gene005385	MS.gene020725	PPI
MS.gene009835	MS.gene020725	PPI
MS.gene011642	MS.gene020725	PPI

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene020725.t1	MTR_5g094820	79.122	934	80	6	1	934	1	819	0.0	1414
MS.gene020725.t1	MTR_5g095120	58.221	967	325	18	29	934	31	979	0.0	945
MS.gene020725.t1	MTR_5g079980	57.335	968	334	18	25	934	29	975	0.0	918
MS.gene020725.t1	MTR_5g096340	55.293	973	359	17	26	934	26	986	0.0	901
MS.gene020725.t1	MTR_2g032560	57.871	902	342	16	57	934	42	929	0.0	891
MS.gene020725.t1	MTR_5g080000	56.848	920	320	16	25	934	29	881	0.0	880
MS.gene020725.t1	MTR_5g094800	90.457	503	33	4	1	501	1	490	0.0	873
MS.gene020725.t1	MTR_5g094800	28.942	463	233	14	431	854	71	476	2.24e-18	89.7
MS.gene020725.t1	MTR_5g094800	30.952	378	208	14	344	712	78	411	8.23e-18	88.2
MS.gene020725.t1	MTR_5g094800	27.226	393	228	13	519	878	109	476	1.10e-17	87.8

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene020725.t1	AT2G15080	36.146	960	512	25	1	914	8	912	2.22e-137	436
MS.gene020725.t1	AT2G15080	36.146	960	512	25	1	914	8	912	2.22e-137	436
MS.gene020725.t1	AT1G47890	35.962	951	517	19	4	916	55	951	1.71e-132	424
MS.gene020725.t1	AT3G11010	35.640	968	479	29	12	928	20	894	3.42e-131	419
MS.gene020725.t1	AT1G45616	34.274	957	501	16	26	919	36	927	5.58e-131	419
MS.gene020725.t1	AT3G11010	36.295	923	451	27	50	928	2	831	6.34e-128	408
MS.gene020725.t1	AT5G27060	36.413	920	508	23	25	928	37	895	2.31e-127	409
MS.gene020725.t1	AT5G27060	36.413	920	508	23	25	928	36	894	2.33e-127	408
MS.gene020725.t1	AT5G27060	36.413	920	508	23	25	928	36	894	2.33e-127	408
MS.gene020725.t1	AT4G13920	33.297	928	493	22	7	913	8	830	2.71e-120	388

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Find 183 sgRNAs with CRISPR-Local

Find 206 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAACTGTAGAACTGACCCT+TGG	0.564708	5.3:-76994602	None:intergenic
AAATATTTCTCCAAATGATT+TGG	0.240502	5.3:-76995348	None:intergenic
AACATATCTGGTAACCAATT+TGG	0.242967	5.3:-76995422	None:intergenic
AACCTCCAGGTTTGTGCAGT+TGG	0.418706	5.3:-76995786	None:intergenic
AACTCCAATACTCTTAAGCT+AGG	0.538883	5.3:-76995299	None:intergenic
AAGATAGACACAAGTTAGTT+AGG	0.315698	5.3:-76995142	None:intergenic
AATATAATTAAATTGGGAAA+TGG	0.362757	5.3:-76995941	None:intergenic
AATATTTCTCCAAATGATTT+GGG	0.315648	5.3:-76995347	None:intergenic
AATGGGACCATGAAACTTAT+TGG	0.336334	5.3:-76995894	None:intergenic
AATTGGGATGAAAGTTGAGT+TGG	0.470015	5.3:-76994141	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AACATATCTGGTAACCAATT+TGG	-	chr5.3:76995425-76995444	None:intergenic	30.0%
AAGATAGACACAAGTTAGTT+AGG	-	chr5.3:76995145-76995164	None:intergenic	30.0%
ACAAGTTAGTTAGGTTTACA+AGG	-	chr5.3:76995136-76995155	None:intergenic	30.0%
ACTGAATTTCCCAAATCATT+TGG	+	chr5.3:76995338-76995357	MS.gene020725:CDS	30.0%
AGATCTAAATCTACCAAAGA+TGG	-	chr5.3:76995002-76995021	None:intergenic	30.0%
AGTAGTATCTATGTTGAAAG+AGG	-	chr5.3:76993902-76993921	None:intergenic	30.0%
ATAATGCTGTTAGGTTTGAA+AGG	-	chr5.3:76994926-76994945	None:intergenic	30.0%
ATCAAATTTCCAAAGGATTG+AGG	-	chr5.3:76996295-76996314	None:intergenic	30.0%
ATCTTAGTTTCAACTCACTA+GGG	+	chr5.3:76995528-76995547	MS.gene020725:CDS	30.0%
GATACTACTGATACTAATTG+CGG	+	chr5.3:76993913-76993932	MS.gene020725:CDS	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr5.3	gene	76993784	76996588	76993784	ID=MS.gene020725
chr5.3	mRNA	76993784	76996588	76993784	ID=MS.gene020725.t1;Parent=MS.gene020725
chr5.3	exon	76993784	76996588	76993784	ID=MS.gene020725.t1.exon1;Parent=MS.gene020725.t1
chr5.3	CDS	76993784	76996588	76993784	ID=cds.MS.gene020725.t1;Parent=MS.gene020725.t1

Gene Sequence

>MS.gene020725

ATGGGTTGGTTGCTAATTCTGTGTTTGCAGTTTTTCTTGTTGCTCACTCATGTTATATCTTCTTTTCATTTTATATGCCTCCTCGATGACAATTCTTCCTTGATTCAATTCAAAGCCTCTTTCAACATAGATACTACTGATACTAATTGCGGTAAGCTAGCTTATGCAGAGGTATCATCATGGCAAAATGGTACAGATTGTTGCTCATGGCTTGGTGTCACCTGTGACACAATTTCTAGTCACGTAATTGGCTTAGACCTCAGCTGCAATGGCCTTCAAGGTATGATTCATCCCAACAGTACACTTTTTCATCTTTCTCATCTCCAAACACTCAACCTTGCTCATAATAGATTATTCCCAACTCAACTTTCATCCCAATTTGGTGCTTTTGTCAATCTTACACACCTCAACTTGTCTGATACCGAGATTCAAGGTGAAGTTTCTTCCTATATCTCACACCTTTCTAAATTGGTGTCACTTGATCTCTCCATGAATGACGATTTAAAGTGGATACAAGAAGTCACTTTGAAGAGGCTGCTGCAAAATGCAACATCTTTGACAGAGCTTGTTTTCGACCATACAAACATGTCTTTCATCGCGCCAAGCTCATTTTTTTCATTTCTTAATCTATCTTCTTTGGTTACTATTAGTCTTAAAGGAATTGGTTTAAGTGGAAACATGATGTCAAATGAAAACACTCTTTGTTTGCCAAAACTTCAAGAGCTATATATGTCAGCTAACTTCGACCTTCGAGGTCAACTTCCAAAGTTGAGTTGCAGCACTTCCCTTACTGTATTGGATCTTTCACAATGTCAATTCCAAGGGTCAGTTCTACAGTTTTTCTCTAACCACACACAACTTACCTTCTTGAGTCTCTCAGGAAACAGTGTAGGAGGTGAGATACCACCATCATGGCTTTCAAGCCTTAAACAACTCACTCTCATGGATTTTTCAGAGAATACACTCATCGGCCGAATTCCGGATGTGTTTGGTGGCCTAACCAAATTGAAAACTCTCAATCTTAAGAATAACTATTTAGAAGGACAAATCCCATCTTCACTCTTTCACTTAACATCACTTTCTTATTTGGATTGTTTGTCTAATAAGTTAGAGGGTTACCTACCTAACAAAATAACAGGCCTTTCAAACCTAACAGCATTATGGCTCAATAACAACACACTGAAAGGAACAATTCCTTCTTGGTCTGTGTCTTTGCCATCTTTGGTAGATTTAGATCTATCAAATAATCAGTTTACAGGGCACATAAGTACTGCAATCTCCTCACATTCCTTAGAGTATATGTATTTGTGCAACATGTTACAAGGAAATATTCCAGAATCACTTTTCAACCTTGTAAACCTAACTAACTTGTGTCTATCTTCAAATAACTTAAGTGGTTTTGTTGATTTTAAACTCTTTTCGAAGTTCCAAAATCTGGAAAGTCTTTCCCTTTCTCAGAATAGTCAATTATCAGTGAACTTTGAATCTGATTCTGAGCTGTTAAATTACAGTTTCCCTAGCTTAAGAGTATTGGAGTTATCTTCTCTCAGTTTAACTGAATTTCCCAAATCATTTGGAGAAATATTTCCAAGTTTGGTCTATGTGGATCTATCCAATAATAAGTTGAGTGGAAGAGTGCCAAATTGGTTACCAGATATGTTTTTATTACAATCTTTGAACCTCTCTCATAACATGTTCACATCAATAGACCAATTCTCAAAGCATTACTGGCTGAGATCCCTTGATCTTAGTTTCAACTCACTAGGGGGTGAGATATCTTTGTCAATTTGCAATGCAACTGTACTTCAAATTCTTAACTTGTCCCACAACAAATTAACAGGTATGATCCCACAATGCCTTGCAAACTTACCATTCCTTCAAGTTTTGGACATAGAGATGAATAAACTTTATGGTTCTGTGCCAAATACCTTTTCAAGTATGACTTTCAGCACTCTCAATCTTAATGGCAACCAATTAGAAGGTCCTTTGCCAAAATCTTTGTCCAACTGCACAAACCTGGAGGTTTTAAATCTTGGCAACAACAAAATAGAGGACACGTTTCCCCATTGGCTTCAAACTTTGTCACATTTGAAAGTACTGGTTTTGCGAGCCAATAAGTTTCATGGTCCCATTACCAATTTAAAGATCAACAGAAATCCATTTCCCAATTTAATTATATTTGATATCTCATGCAATGACTTCAGTGGTCCAATACCAAAATTCTACGCAGAAAATTTTGAAGCCATGAAGAATGTTATTCCTGTACAATTTCAATACATGAAAAAGATGGCAACCATTGCAACATATACCCGTACCTACGAGTTTTTCTATGACTCTGTGACTGTAACAATAAAAGGAATTGATATCACGTATACAAAAATTCCTACAATCTTTGTAAGTATTGATTTGTCAGGAAACAAATTTGAAGGAGACATTCCAAATGTTATTGGCGAGCTTCATGCACTCATAGGGCTCAACCTTTCCCACAATAGACTTATTGGTCCGATTCCTCAATCCTTTGGAAATTTGATAAACATCGAATCAATGGATCTCTCCTCAAATATGCTCACTGGTAGGATTCCTATAGAGTTAACCAATCTAAACTACCTTGCAGTCTTGAATGTCTCTCAAAACCATCTTGAAGGAGAAATACCTAAAGGAGAACAGTTTGATACATTTTCCAATGATTCCTATGTGGGAAACTATGGATTGTGTGGACTTCCATTGTCAAAAACTTGCAACAAAATTTCTCCACCTTCAACATCTTCTGATGAGCATGAACAAAAATTTGGATTTGGTTGGTAA

Protein sequence

>MS.gene020725.t1

MGWLLILCLQFFLLLTHVISSFHFICLLDDNSSLIQFKASFNIDTTDTNCGKLAYAEVSSWQNGTDCCSWLGVTCDTISSHVIGLDLSCNGLQGMIHPNSTLFHLSHLQTLNLAHNRLFPTQLSSQFGAFVNLTHLNLSDTEIQGEVSSYISHLSKLVSLDLSMNDDLKWIQEVTLKRLLQNATSLTELVFDHTNMSFIAPSSFFSFLNLSSLVTISLKGIGLSGNMMSNENTLCLPKLQELYMSANFDLRGQLPKLSCSTSLTVLDLSQCQFQGSVLQFFSNHTQLTFLSLSGNSVGGEIPPSWLSSLKQLTLMDFSENTLIGRIPDVFGGLTKLKTLNLKNNYLEGQIPSSLFHLTSLSYLDCLSNKLEGYLPNKITGLSNLTALWLNNNTLKGTIPSWSVSLPSLVDLDLSNNQFTGHISTAISSHSLEYMYLCNMLQGNIPESLFNLVNLTNLCLSSNNLSGFVDFKLFSKFQNLESLSLSQNSQLSVNFESDSELLNYSFPSLRVLELSSLSLTEFPKSFGEIFPSLVYVDLSNNKLSGRVPNWLPDMFLLQSLNLSHNMFTSIDQFSKHYWLRSLDLSFNSLGGEISLSICNATVLQILNLSHNKLTGMIPQCLANLPFLQVLDIEMNKLYGSVPNTFSSMTFSTLNLNGNQLEGPLPKSLSNCTNLEVLNLGNNKIEDTFPHWLQTLSHLKVLVLRANKFHGPITNLKINRNPFPNLIIFDISCNDFSGPIPKFYAENFEAMKNVIPVQFQYMKKMATIATYTRTYEFFYDSVTVTIKGIDITYTKIPTIFVSIDLSGNKFEGDIPNVIGELHALIGLNLSHNRLIGPIPQSFGNLINIESMDLSSNMLTGRIPIELTNLNYLAVLNVSQNHLEGEIPKGEQFDTFSNDSYVGNYGLCGLPLSKTCNKISPPSTSSDEHEQKFGFGW