AlfalfaGEDB | MS.gene39142

M. sativa cultivar XinJiangDaYe / MS.gene39142

KEGG: -
GO: GO:0003674 GO:0005488 GO:0005515
PFAM: PF00560.36 PF12799.10 PF13855.9

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene39142.t1	AET00826.2	73.1	335	59	4	367	694	487	797	5.10E-42	183

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene39142.t1	Q9SRL7	43.5	92	51	1	599	690	685	775	2.4e-11	72.4

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene39142.t1	G7KEK5	73.1	335	59	4	367	694	487	797	3.7e-42	183.0

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene050502	MS.gene39142	0.801209	1.00E-48	-1.69E-46
MS.gene052346	MS.gene39142	0.827838	1.25E-54	-1.69E-46
MS.gene052501	MS.gene39142	0.801173	1.02E-48	-1.69E-46
MS.gene052982	MS.gene39142	0.812159	4.88E-51	-1.69E-46
MS.gene053436	MS.gene39142	0.827386	1.61E-54	-1.69E-46
MS.gene053873	MS.gene39142	0.82203	2.95E-53	-1.69E-46
MS.gene054107	MS.gene39142	0.801507	8.72E-49	-1.69E-46
MS.gene05505	MS.gene39142	0.811385	7.19E-51	-1.69E-46
MS.gene055741	MS.gene39142	0.804656	1.95E-49	-1.69E-46
MS.gene055744	MS.gene39142	0.800801	1.22E-48	-1.69E-46

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PPI:

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Gene1	Gene2	Type
MS.gene00013	MS.gene39142	PPI
MS.gene000659	MS.gene39142	PPI
MS.gene000667	MS.gene39142	PPI
MS.gene001273	MS.gene39142	PPI
MS.gene003372	MS.gene39142	PPI
MS.gene005385	MS.gene39142	PPI
MS.gene011642	MS.gene39142	PPI
MS.gene016224	MS.gene39142	PPI
MS.gene032521	MS.gene39142	PPI
MS.gene034567	MS.gene39142	PPI

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene39142.t1	MTR_3g027330	56.701	776	243	10	19	730	111	857	0.0	707
MS.gene39142.t1	MTR_3g027330	44.208	751	282	19	1	730	247	881	7.30e-112	362
MS.gene39142.t1	MTR_3g027330	29.075	454	211	8	1	343	461	914	1.30e-26	117
MS.gene39142.t1	MTR_4g032320	56.344	733	280	8	6	730	248	948	0.0	674
MS.gene39142.t1	MTR_4g032320	35.949	701	307	20	1	594	314	979	1.39e-78	273
MS.gene39142.t1	MTR_4g032320	31.341	686	342	24	111	727	101	726	3.05e-40	159
MS.gene39142.t1	MTR_2g032560	51.204	789	296	15	22	730	70	849	0.0	619
MS.gene39142.t1	MTR_2g032560	32.586	669	360	18	6	599	233	885	3.72e-58	213
MS.gene39142.t1	MTR_2g032560	30.809	383	212	9	1	331	513	894	4.34e-21	99.4
MS.gene39142.t1	MTR_5g096340	54.351	747	243	15	1	730	242	907	0.0	602

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene39142.t1	AT2G15080	38.451	749	430	13	1	730	119	855	3.83e-120	384
MS.gene39142.t1	AT2G15080	26.267	651	356	19	1	565	287	899	1.13e-27	120
MS.gene39142.t1	AT2G15080	28.713	202	120	1	17	194	721	922	2.41e-12	71.2
MS.gene39142.t1	AT2G15080	38.451	749	430	13	1	730	119	855	3.83e-120	384
MS.gene39142.t1	AT2G15080	26.267	651	356	19	1	565	287	899	1.13e-27	120
MS.gene39142.t1	AT2G15080	28.713	202	120	1	17	194	721	922	2.41e-12	71.2
MS.gene39142.t1	AT3G11010	39.623	742	418	17	1	729	39	763	1.91e-117	374
MS.gene39142.t1	AT3G11010	28.507	670	328	19	1	565	185	808	1.04e-36	148
MS.gene39142.t1	AT3G11010	29.550	511	308	12	256	727	32	529	6.21e-25	111
MS.gene39142.t1	AT3G11010	31.636	275	141	3	456	730	60	287	3.22e-20	96.3

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Find 143 sgRNAs with CRISPR-Local

Find 158 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAAGGGAACAACATGACAT+TGG	0.627808	1.2:-41551138	MS.gene39142:CDS
AAAATAGTTAAATCTGGAAA+TGG	0.411665	1.2:+41551317	None:intergenic
AAAATCCCAGATGTGTTTGG+TGG	0.587644	1.2:-41552724	MS.gene39142:CDS
AAATCCCAGATGTGTTTGGT+GGG	0.653753	1.2:-41552723	MS.gene39142:CDS
AAATCCTTGTCTCTCTGTAA+AGG	0.444147	1.2:-41551479	MS.gene39142:CDS
AAATGGCAAGGATAACAAAG+AGG	0.636081	1.2:+41552498	None:intergenic
AACAATTCTCATGGAATCAC+TGG	0.507286	1.2:-41551772	MS.gene39142:CDS
AACTAAGATCAAGGTGTTCT+AGG	0.366437	1.2:+41551744	None:intergenic
AAGATCAAGGTGTTCTAGGT+CGG	0.546138	1.2:+41551748	None:intergenic
AATAGACAAAGAGATGTCAC+CGG	0.650619	1.2:+41551709	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AGAAATACTGTAATTGACAC+TGG	+	chr1.2:41552060-41552079	None:intergenic	30.0%
ATCAACTTCATGTAACCAAT+TGG	+	chr1.2:41552201-41552220	None:intergenic	30.0%
ATCTCAAGCAATAACTTTAG+TGG	-	chr1.2:41552758-41552777	MS.gene39142:CDS	30.0%
ATGATAGATCTAGACTACTT+AGG	+	chr1.2:41551857-41551876	None:intergenic	30.0%
ATGATAGATCTAGTGTACTT+AGG	+	chr1.2:41551932-41551951	None:intergenic	30.0%
CATGTGGAATAACATTACAT+TGG	-	chr1.2:41552844-41552863	MS.gene39142:CDS	30.0%
GATAAATTAGCAAGACATTG+TGG	+	chr1.2:41552425-41552444	None:intergenic	30.0%
GTTCCAAAAGCTAACTTATT+TGG	-	chr1.2:41551491-41551510	MS.gene39142:CDS	30.0%
GTTTCATCCAATTCATTTAG+CGG	-	chr1.2:41551300-41551319	MS.gene39142:CDS	30.0%
TAATACTAGCAAAAATGGCA+AGG	+	chr1.2:41551565-41551584	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr1.2	gene	41550940	41553130	41550940	ID=MS.gene39142
chr1.2	mRNA	41550940	41553130	41550940	ID=MS.gene39142.t1;Parent=MS.gene39142
chr1.2	exon	41550940	41553130	41550940	ID=MS.gene39142.t1.exon1;Parent=MS.gene39142.t1
chr1.2	CDS	41550940	41553130	41550940	ID=cds.MS.gene39142.t1;Parent=MS.gene39142.t1

Gene Sequence

>MS.gene39142

ATGTCACTTAATGAACTTCAAGGGCAACTTCCAGAATTGAGTTGCAGCACTTCTCTAAGAATCTTAAATCTGCGTGATTGTTCATTCAAAGGGGCAATTCCTACCATGTCTTTTTCTAACCTAACACACCTTACCTCTTTAACACTCTCAGGAAACCACCTAAACGGTTCAATCACATCCTCACTTTTAACACTTCCACTGCTAACTTACTTGGATCTCAGTTTGAACGAGCTCAGTGGTCGAATTCCAAATGCATTTCAAATTTCAAACAATTTTCAAGAATTAGTTTTGAGTAATAACAAAATTGAAGGTGAGTTTCCAACATCACTATCAAACCTTCGTCATCTCATTCACTTGGATGTTTCATCCAATTCATTTAGCGGTAAAATCCCAGATGTGTTTGGTGGGATGACAAAACTGCAAGAACTCAACTTAGATTCTAACAATTTAGAAGGACAAATTCCATCTTCATTATTCAACTTGTCTCAGCTTGGTAGATTATTTTGTTCTGATATCAAATTAGAGGGTCCTCTACCCAACAAAATTACAGGGTTCCAAAAGCTAACTTATTTGGAATTAGATGACAACTTGCTAAATGGTACAATTCCTCCCTCTTTGTTATCCTTGCCATTTTTGCTAGTATTAGATTTATCAAATAATCGACTTACAGGGCATATCAGCGCAATCTCATCATATTCCTTAGAGTGGCTATATCTAAGTAACAACATGCTACAAGGCAATATTCCAGAATCCATTTTCAACCTTGCAAACCTAATTAGTCTAGATCTATCATCAAACAACTTGAGTGGTCATGTTGATTTTCAACTTTCCAACCTTCCAAGTCTAGGAAGTCTAGATCTATCATCAAACAACTTGAGTGGTCATGTTGATTTTCAACTCTCCAACCTTCCAAGCCTAAGTAGTCTAGATCTATCATCAAACAACTTGAGTGGTCATTTTGATTTTCAACTCTCCTCATACCTTGCAAACCTAAGTACACTAGATCTATCATCAAACAACTTGAGTGGTGTTGTCAATTTCCAAAACATTTCCAAACTTCAATATTTGGAATCTCTGTACCTTTCAGATAATAGCCAATTATCAATAAACTTTGAATCCAGTGTCAATTACAGTATTTCTAATCTATTTGAATTGGGTTTGTCTTCTTTGAGTTTGACTGAATTTCCTAATTTGTCAGAAAAATTCCCAATGTTGGGATATCTTGATCTGTCTAATAACAAAATTAGTGGAAGTGTGCCCAATTGGTTACATGAAGTTGATTACGGGTCTTCACCAATATTTTTGAACCTCTCTCGAAACTTATTCACATCATTGGAACAATTCTCATGGAATCACTGGCCCGACCTAGAACACCTTGATCTTAGTTATAACTTACTAACCGGTGACATCTCTTTGTCTATTTGCAATGCAAGTGGCCTTTCATTTCTCAGTTTGGCATACAATCAATTGACAGGCACCATTCCACAATGTCTTGCTAATTTATCATCCCTTGAACTTTTGGATTTACAAATGAACAAGTTTCATGGCACTTTGCCAAGTAACTTTTCAAAGGAAAGTGCACTTGAGAGTCTGAATCTCTATGGCAACCAATTAGAAGGTCATATTCCTAAATCCTTGTCTCTCTGTAAAGGGTTGAAGTTTCTAAACCTTGGCAGCAACAAAATAGAAGACAATTTTCCTCATTGGCTTCAAACACTGCAATATTTGAAAGTGTTGCTTTTGCGAGACAATAAGTTGCATGGTATCATTGTTAATCCAAAGCTCAAGCATCCATTTCCAGATTTAACTATTTTTGATATCTCAAGCAATAACTTTAGTGGTCCTCTACCAAAAGCCTATTTCAAAAAGTTTGAAGCCATGATGAATGTTACTGAGTTGGAATACATGTGGAATAACATTACATTGGTGAAAAAAGTTGCACCCTACTACGACTCTGTGATTGTGGCGACAAAAGGGAACAACATGACATTGGTGAAAATTCCAAACATCTTTGTAATTATTGATTTGTCAAGAAACAAATTTGAAGGAGACATTCCAAACGTTATTGGTGAGCTTCATGCAATCATAGGGCTTAACCTCTCCCATAACAGACTTACAGGTCATATTCCCAAATCCATAGGAAACTTGACATACTTGGAATCTCTGGATCTTTCCTCAAATATGTTAACCG

Protein sequence

>MS.gene39142.t1

MSLNELQGQLPELSCSTSLRILNLRDCSFKGAIPTMSFSNLTHLTSLTLSGNHLNGSITSSLLTLPLLTYLDLSLNELSGRIPNAFQISNNFQELVLSNNKIEGEFPTSLSNLRHLIHLDVSSNSFSGKIPDVFGGMTKLQELNLDSNNLEGQIPSSLFNLSQLGRLFCSDIKLEGPLPNKITGFQKLTYLELDDNLLNGTIPPSLLSLPFLLVLDLSNNRLTGHISAISSYSLEWLYLSNNMLQGNIPESIFNLANLISLDLSSNNLSGHVDFQLSNLPSLGSLDLSSNNLSGHVDFQLSNLPSLSSLDLSSNNLSGHFDFQLSSYLANLSTLDLSSNNLSGVVNFQNISKLQYLESLYLSDNSQLSINFESSVNYSISNLFELGLSSLSLTEFPNLSEKFPMLGYLDLSNNKISGSVPNWLHEVDYGSSPIFLNLSRNLFTSLEQFSWNHWPDLEHLDLSYNLLTGDISLSICNASGLSFLSLAYNQLTGTIPQCLANLSSLELLDLQMNKFHGTLPSNFSKESALESLNLYGNQLEGHIPKSLSLCKGLKFLNLGSNKIEDNFPHWLQTLQYLKVLLLRDNKLHGIIVNPKLKHPFPDLTIFDISSNNFSGPLPKAYFKKFEAMMNVTELEYMWNNITLVKKVAPYYDSVIVATKGNNMTLVKIPNIFVIIDLSRNKFEGDIPNVIGELHAIIGLNLSHNRLTGHIPKSIGNLTYLESLDLSSNMLT