Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene03709.t1 | XP_003606328.2 | 98.5 | 206 | 3 | 0 | 1 | 206 | 1 | 206 | 2.20E-107 | 398.3 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene03709.t1 | O65198 | 99.5 | 202 | 1 | 0 | 5 | 206 | 1 | 202 | 2.9e-108 | 392.5 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene03709.t1 | B7FHQ5 | 98.5 | 206 | 3 | 0 | 1 | 206 | 1 | 206 | 1.6e-107 | 398.3 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene03709 | MS.gene62862 | PPI |
| MS.gene71901 | MS.gene03709 | PPI |
| MS.gene011492 | MS.gene03709 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene03709.t1 | MTR_4g057240 | 98.544 | 206 | 3 | 0 | 1 | 206 | 1 | 206 | 3.04e-147 | 407 |
| MS.gene03709.t1 | MTR_7g114240 | 68.919 | 148 | 46 | 0 | 56 | 203 | 3 | 150 | 6.10e-71 | 213 |
| MS.gene03709.t1 | MTR_6g029200 | 60.403 | 149 | 58 | 1 | 56 | 203 | 9 | 157 | 1.26e-57 | 179 |
| MS.gene03709.t1 | MTR_6g029200 | 61.111 | 144 | 53 | 1 | 63 | 203 | 4 | 147 | 3.29e-56 | 175 |
| MS.gene03709.t1 | MTR_7g114240 | 63.366 | 101 | 37 | 0 | 56 | 156 | 3 | 103 | 1.27e-41 | 137 |
| MS.gene03709.t1 | MTR_4g101820 | 35.537 | 121 | 67 | 4 | 57 | 176 | 157 | 267 | 2.54e-11 | 62.0 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene03709.t1 | AT2G28190 | 72.986 | 211 | 48 | 2 | 3 | 206 | 8 | 216 | 1.65e-102 | 295 |
| MS.gene03709.t1 | AT1G08830 | 66.892 | 148 | 49 | 0 | 56 | 203 | 3 | 150 | 3.20e-67 | 203 |
| MS.gene03709.t1 | AT1G08830 | 66.892 | 148 | 49 | 0 | 56 | 203 | 3 | 150 | 3.20e-67 | 203 |
| MS.gene03709.t1 | AT5G18100 | 60.135 | 148 | 59 | 0 | 56 | 203 | 9 | 156 | 4.63e-61 | 188 |
| MS.gene03709.t1 | AT5G18100 | 58.730 | 126 | 52 | 0 | 56 | 181 | 9 | 134 | 1.49e-48 | 155 |
| MS.gene03709.t1 | AT1G12520 | 37.190 | 121 | 67 | 3 | 57 | 177 | 28 | 139 | 1.74e-14 | 68.9 |
| MS.gene03709.t1 | AT1G12520 | 37.190 | 121 | 67 | 3 | 57 | 177 | 164 | 275 | 4.71e-14 | 69.7 |
| MS.gene03709.t1 | AT1G12520 | 37.190 | 121 | 67 | 3 | 57 | 177 | 73 | 184 | 5.30e-14 | 68.6 |
Find 68 sgRNAs with CRISPR-Local
Find 202 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AAGAACTGCAACAGCTTTCT+TGG | 0.257195 | 4.3:-43921251 | None:intergenic |
| GGCCTTACTCCAGGGCTTCA+TGG | 0.278416 | 4.3:+43922107 | MS.gene03709:CDS |
| AACGGAGAGAGGCTGGAATT+TGG | 0.292602 | 4.3:-43921218 | None:intergenic |
| GGCTCTCCCAATGACTGAAT+TGG | 0.294518 | 4.3:-43922786 | None:intergenic |
| GAAAGCTGTTGCAGTTCTTA+AGG | 0.327591 | 4.3:+43921255 | MS.gene03709:CDS |
| GCTCTCCCAATGACTGAATT+GGG | 0.359785 | 4.3:-43922785 | None:intergenic |
| GCATGACGGATTTCATCTTC+AGG | 0.389426 | 4.3:-43922426 | None:intergenic |
| TTTATCTTGCAGCACGAGTA+TGG | 0.392047 | 4.3:+43922226 | MS.gene03709:intron |
| AAAGCTGTTGCAGTTCTTAA+GGG | 0.393106 | 4.3:+43921256 | MS.gene03709:CDS |
| AGCGTTTGTAGCATTTATAC+TGG | 0.397586 | 4.3:-43924463 | None:intergenic |
| GGCAACAATCGTTGACAATC+AGG | 0.399165 | 4.3:+43922583 | MS.gene03709:CDS |
| CGTATCACTGGCCTTACTCC+AGG | 0.406214 | 4.3:+43922098 | MS.gene03709:CDS |
| GAGTGAGAAGTGAGTGGCGA+AGG | 0.415982 | 4.3:-43921127 | None:intergenic |
| ACTGGCCCCAATTCAGTCAT+TGG | 0.417542 | 4.3:+43922779 | MS.gene03709:CDS |
| CAGGAGCACCGTGTGTCAAC+TGG | 0.432832 | 4.3:-43922407 | None:intergenic |
| AATCCGTCATGCGGGTGACC+TGG | 0.434387 | 4.3:+43922437 | MS.gene03709:CDS |
| AACCATGAAGCCCTGGAGTA+AGG | 0.443025 | 4.3:-43922109 | None:intergenic |
| CAGCAACAACGGAGAGAGGC+TGG | 0.455953 | 4.3:-43921225 | None:intergenic |
| GCACCGTGTGTCAACTGGTT+AGG | 0.459986 | 4.3:-43922402 | None:intergenic |
| AGTCATTGGGAGAGCCTTAG+TGG | 0.466496 | 4.3:+43922793 | MS.gene03709:CDS |
| AAGGGTAACTCCACTGTTGA+AGG | 0.471786 | 4.3:+43921274 | MS.gene03709:CDS |
| CTGGCCCCAATTCAGTCATT+GGG | 0.477587 | 4.3:+43922780 | MS.gene03709:CDS |
| TTGATTGTTTCAGGTGTGGT+TGG | 0.496252 | 4.3:+43924433 | MS.gene03709:intron |
| CTTGAAGATGACCTTGGAAA+GGG | 0.496504 | 4.3:+43922824 | MS.gene03709:CDS |
| CATCAGCAATTATGTTTCCC+AGG | 0.498669 | 4.3:-43922455 | None:intergenic |
| ACAGTCAATGTTCGTATCAC+TGG | 0.500510 | 4.3:+43922086 | MS.gene03709:CDS |
| ATACGAACATTGACTGTTGT+TGG | 0.508293 | 4.3:-43922080 | None:intergenic |
| CTGGAATTTGGAACGCGAAA+GGG | 0.512711 | 4.3:-43921206 | None:intergenic |
| CTTCTCCGATCATCTTTCTC+CGG | 0.517355 | 4.3:+43921151 | MS.gene03709:CDS |
| GAGAGTGTGACGCCATTGTT+AGG | 0.519424 | 4.3:-43921096 | None:intergenic |
| ATCCGTCATGCGGGTGACCT+GGG | 0.530041 | 4.3:+43922438 | MS.gene03709:CDS |
| CGCGAAAGGGTTGAGAATTG+AGG | 0.534704 | 4.3:-43921193 | None:intergenic |
| AGTTTGAGCACTGGAAATGC+CGG | 0.542289 | 4.3:+43923146 | MS.gene03709:CDS |
| CATGAACTTAGTTTGAGCAC+TGG | 0.549851 | 4.3:+43923137 | MS.gene03709:CDS |
| GTATCACTGGCCTTACTCCA+GGG | 0.550072 | 4.3:+43922099 | MS.gene03709:CDS |
| AGGTGAAAACCATGAAGCCC+TGG | 0.553380 | 4.3:-43922116 | None:intergenic |
| ACCAATGGGTGTATCTCGAC+AGG | 0.554865 | 4.3:+43922256 | MS.gene03709:CDS |
| TTCAAGCTCATGAACCACTA+AGG | 0.558296 | 4.3:-43922807 | None:intergenic |
| CATGAGCTTGAAGATGACCT+TGG | 0.559793 | 4.3:+43922818 | MS.gene03709:CDS |
| GAAGATGAAATCCGTCATGC+GGG | 0.564092 | 4.3:+43922429 | MS.gene03709:CDS |
| GCTGGAATTTGGAACGCGAA+AGG | 0.574919 | 4.3:-43921207 | None:intergenic |
| ACCTGTCGAGATACACCCAT+TGG | 0.575585 | 4.3:-43922257 | None:intergenic |
| AGAGAGCTTGACGGAGACGC+CGG | 0.577978 | 4.3:-43921170 | None:intergenic |
| AGTAACAACACCTTCAACAG+TGG | 0.579962 | 4.3:-43921284 | None:intergenic |
| GCTTGAAGATGACCTTGGAA+AGG | 0.581249 | 4.3:+43922823 | MS.gene03709:CDS |
| GAATTGAGGAGAGAGCTTGA+CGG | 0.581862 | 4.3:-43921179 | None:intergenic |
| AACATAATTGCTGATGCCAA+CGG | 0.589398 | 4.3:+43922462 | MS.gene03709:CDS |
| GGATGAACTAACCCTTTCCA+AGG | 0.593520 | 4.3:-43922835 | None:intergenic |
| GAGTATGGTGATACCACCAA+TGG | 0.595372 | 4.3:+43922241 | MS.gene03709:CDS |
| AGTATGGTGATACCACCAAT+GGG | 0.608769 | 4.3:+43922242 | MS.gene03709:CDS |
| GTGAAACACAGGCGTTGCAG+AGG | 0.609173 | 4.3:+43922562 | MS.gene03709:intron |
| TTTCTTGGCAGCAGCAACAA+CGG | 0.616837 | 4.3:-43921236 | None:intergenic |
| GCAGCAGCAACAACGGAGAG+AGG | 0.618791 | 4.3:-43921229 | None:intergenic |
| TGTCGAGATACACCCATTGG+TGG | 0.618804 | 4.3:-43922254 | None:intergenic |
| CTCTCCCAATGACTGAATTG+GGG | 0.619637 | 4.3:-43922784 | None:intergenic |
| ACCACAGGCTAATCTTCCAC+CGG | 0.621370 | 4.3:-43923165 | None:intergenic |
| AATCTTCATGCACCTAACAA+TGG | 0.624185 | 4.3:+43921084 | None:intergenic |
| AATCCTAACCAGTTGACACA+CGG | 0.627360 | 4.3:+43922399 | MS.gene03709:CDS |
| TTCCCAGGTCACCCGCATGA+CGG | 0.629118 | 4.3:-43922440 | None:intergenic |
| TGAAGATGAAATCCGTCATG+CGG | 0.631482 | 4.3:+43922428 | MS.gene03709:CDS |
| ATCATGCAGATACCACTCAC+TGG | 0.633823 | 4.3:+43922761 | MS.gene03709:intron |
| AGACGCCGGAGAAAGATGAT+CGG | 0.638557 | 4.3:-43921156 | None:intergenic |
| TTGAGCACTGGAAATGCCGG+TGG | 0.645778 | 4.3:+43923149 | MS.gene03709:CDS |
| AGAAGAGAGTGAGAAGTGAG+TGG | 0.648773 | 4.3:-43921133 | None:intergenic |
| ACTGAATTGGGGCCAGTGAG+TGG | 0.664251 | 4.3:-43922773 | None:intergenic |
| GCCGGTGGAAGATTAGCCTG+TGG | 0.696428 | 4.3:+43923164 | MS.gene03709:CDS |
| ACTCTTACTCAAGAAAACGA+AGG | 0.698943 | 4.3:+43921304 | MS.gene03709:CDS |
| AACTGGTTAGGATTGAAATG+TGG | 0.750548 | 4.3:-43922390 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATTTAAATAAATATATAAAA+TGG | - | chr4.3:43922859-43922878 | None:intergenic | 0.0% |
| !! | CAATAACATAATATTAATCT+AGG | + | chr4.3:43923568-43923587 | MS.gene03709:intron | 15.0% |
| !! | TCGATATCTTTAAATTAAAA+GGG | + | chr4.3:43923698-43923717 | MS.gene03709:intron | 15.0% |
| !!! | AAATATAAAGGTACAAAAAA+TGG | - | chr4.3:43922304-43922323 | None:intergenic | 15.0% |
| !!! | AACTAAATAAACAATTTTGA+AGG | - | chr4.3:43922166-43922185 | None:intergenic | 15.0% |
| !!! | ACTGTTTTAATATAATCTAT+AGG | + | chr4.3:43921610-43921629 | MS.gene03709:intron | 15.0% |
| !!! | TTATTTTCCTCTAAAAAATA+TGG | + | chr4.3:43922200-43922219 | MS.gene03709:intron | 15.0% |
| !! | AACATATAAGCATTTAAGTA+TGG | - | chr4.3:43923246-43923265 | None:intergenic | 20.0% |
| !! | AATAATTGAAGATCATGAAA+AGG | - | chr4.3:43923223-43923242 | None:intergenic | 20.0% |
| !! | AATGCATTATGAATCTTTAT+AGG | + | chr4.3:43921447-43921466 | MS.gene03709:intron | 20.0% |
| !! | AGGTTATTATTATACAGTAA+GGG | - | chr4.3:43924024-43924043 | None:intergenic | 20.0% |
| !! | ATCAATTATCGATAATAGTT+TGG | + | chr4.3:43921368-43921387 | MS.gene03709:intron | 20.0% |
| !! | ATCCAATAATCTTATGAAAA+CGG | - | chr4.3:43921705-43921724 | None:intergenic | 20.0% |
| !! | CCATTATCTATTGTTTATTT+GGG | - | chr4.3:43922941-43922960 | None:intergenic | 20.0% |
| !! | CTCGATATCTTTAAATTAAA+AGG | + | chr4.3:43923697-43923716 | MS.gene03709:intron | 20.0% |
| !! | GATTATGAGTAATTGAAATT+TGG | + | chr4.3:43921412-43921431 | MS.gene03709:intron | 20.0% |
| !!! | ACATAATATTTGGTGTTAAA+AGG | + | chr4.3:43923877-43923896 | MS.gene03709:intron | 20.0% |
| !!! | ATATATGCTTTTTAGAATTG+TGG | + | chr4.3:43923545-43923564 | MS.gene03709:intron | 20.0% |
| !!! | TAAAACACCATATTTTTTAG+AGG | - | chr4.3:43922210-43922229 | None:intergenic | 20.0% |
| !!! | TATGAATCTTTATAGGTTTT+GGG | + | chr4.3:43921454-43921473 | MS.gene03709:intron | 20.0% |
| !!! | TTATCATCTCATTTTAAAGT+TGG | + | chr4.3:43923937-43923956 | MS.gene03709:intron | 20.0% |
| !!! | TTATGAATCTTTATAGGTTT+TGG | + | chr4.3:43921453-43921472 | MS.gene03709:intron | 20.0% |
| ! | AAAAAATGGAAACTAAGGTT+AGG | - | chr4.3:43922290-43922309 | None:intergenic | 25.0% |
| ! | ACCATAGGAACAAAATATAA+AGG | - | chr4.3:43922316-43922335 | None:intergenic | 25.0% |
| ! | AGCATGTTAATTTAGATAAG+GGG | + | chr4.3:43924227-43924246 | MS.gene03709:intron | 25.0% |
| ! | AGTCCAATTCTTAAAAGTTA+TGG | + | chr4.3:43924313-43924332 | MS.gene03709:intron | 25.0% |
| ! | ATAAATGTAATCCCTATACT+CGG | - | chr4.3:43923812-43923831 | None:intergenic | 25.0% |
| ! | ATATGAACTTGTCTTGATTT+GGG | + | chr4.3:43921495-43921514 | MS.gene03709:intron | 25.0% |
| ! | ATGTCTCGAAACATAATATT+TGG | + | chr4.3:43923867-43923886 | MS.gene03709:intron | 25.0% |
| ! | ATTGTTTATTTGGGTAATAC+AGG | - | chr4.3:43922932-43922951 | None:intergenic | 25.0% |
| ! | CAAGTATTAATTAGTGACAT+AGG | - | chr4.3:43924094-43924113 | None:intergenic | 25.0% |
| ! | CAGGTTATTATTATACAGTA+AGG | - | chr4.3:43924025-43924044 | None:intergenic | 25.0% |
| ! | CCCAAATAAACAATAGATAA+TGG | + | chr4.3:43922938-43922957 | MS.gene03709:intron | 25.0% |
| ! | GAATGACATGAATATGAAAT+TGG | + | chr4.3:43922979-43922998 | MS.gene03709:intron | 25.0% |
| ! | GAGCATGTTAATTTAGATAA+GGG | + | chr4.3:43924226-43924245 | MS.gene03709:intron | 25.0% |
| ! | GCCATTATCTATTGTTTATT+TGG | - | chr4.3:43922942-43922961 | None:intergenic | 25.0% |
| ! | TAACATTTAGCAACATATAC+AGG | - | chr4.3:43923468-43923487 | None:intergenic | 25.0% |
| ! | TAAGAATTGGACTATTGAAT+AGG | - | chr4.3:43924306-43924325 | None:intergenic | 25.0% |
| ! | TGAGCATGTTAATTTAGATA+AGG | + | chr4.3:43924225-43924244 | MS.gene03709:intron | 25.0% |
| ! | TGTATATGTTGCTAAATGTT+AGG | + | chr4.3:43923467-43923486 | MS.gene03709:intron | 25.0% |
| ! | TTTAAGTCTTTGAATAAGCT+TGG | + | chr4.3:43923376-43923395 | MS.gene03709:intron | 25.0% |
| !! | ACCTTTATATTTTGTTCCTA+TGG | + | chr4.3:43922312-43922331 | MS.gene03709:intron | 25.0% |
| !! | TATATTTTGTTCCTATGGTT+TGG | + | chr4.3:43922317-43922336 | MS.gene03709:intron | 25.0% |
| !!! | AGATACTTCCTAGTTTTAAT+TGG | - | chr4.3:43923599-43923618 | None:intergenic | 25.0% |
| !!! | AGGATATTGTTTTTAAAAGC+AGG | - | chr4.3:43924044-43924063 | None:intergenic | 25.0% |
| !!! | ATAAACAATTTTGAAGGAAG+AGG | - | chr4.3:43922160-43922179 | None:intergenic | 25.0% |
| !!! | ATCTCATTTTAAAGTTGGAT+TGG | + | chr4.3:43923942-43923961 | MS.gene03709:intron | 25.0% |
| !!! | CGATAATAGTTTGGTTTTTT+TGG | + | chr4.3:43921377-43921396 | MS.gene03709:intron | 25.0% |
| !!! | TAACTGCAGTATTTTTACTT+TGG | + | chr4.3:43923079-43923098 | MS.gene03709:intron | 25.0% |
| !!! | TAATTAAGAAGAGCATGTTT+TGG | - | chr4.3:43921952-43921971 | None:intergenic | 25.0% |
| !!! | TCGATAATTGATAACGAAAA+TGG | - | chr4.3:43921360-43921379 | None:intergenic | 25.0% |
| !!! | TGTAGCTATTTGTTTTTTTG+TGG | + | chr4.3:43922047-43922066 | MS.gene03709:intron | 25.0% |
| AACGAAAATGGAGAATTGAA+CGG | - | chr4.3:43921348-43921367 | None:intergenic | 30.0% | |
| AAGTTATTCCATAGAGCTTA+TGG | + | chr4.3:43921820-43921839 | MS.gene03709:intron | 30.0% | |
| AATACAGTGGATAGAATGTA+AGG | + | chr4.3:43923966-43923985 | MS.gene03709:intron | 30.0% | |
| AATAGGCTAAACAATTTGAC+TGG | - | chr4.3:43924289-43924308 | None:intergenic | 30.0% | |
| AGGATTCTCCAATTAAAACT+AGG | + | chr4.3:43923588-43923607 | MS.gene03709:intron | 30.0% | |
| ATACAGTGGATAGAATGTAA+GGG | + | chr4.3:43923967-43923986 | MS.gene03709:intron | 30.0% | |
| ATAGGCTAAACAATTTGACT+GGG | - | chr4.3:43924288-43924307 | None:intergenic | 30.0% | |
| CAATAGACAAGTTATCATAG+AGG | - | chr4.3:43924410-43924429 | None:intergenic | 30.0% | |
| CATATGAACTTGTCTTGATT+TGG | + | chr4.3:43921494-43921513 | MS.gene03709:intron | 30.0% | |
| GGTACAAAAAATGGAAACTA+AGG | - | chr4.3:43922295-43922314 | None:intergenic | 30.0% | |
| TCTTAAGTATACTGTATACG+TGG | + | chr4.3:43921982-43922001 | MS.gene03709:intron | 30.0% | |
| TGTGGTATGTAGAAAACTAT+GGG | + | chr4.3:43923182-43923201 | MS.gene03709:intron | 30.0% | |
| ! | GCTTCTTGAATCTCTTATTT+AGG | + | chr4.3:43922366-43922385 | MS.gene03709:intron | 30.0% |
| !! | AGCCGTTTTCATAAGATTAT+TGG | + | chr4.3:43921700-43921719 | MS.gene03709:intron | 30.0% |
| !! | CAGCCATAACTTTTAAGAAT+TGG | - | chr4.3:43924319-43924338 | None:intergenic | 30.0% |
| !!! | GTTTTTTTGGTTAGTGAGAA+TGG | + | chr4.3:43921390-43921409 | MS.gene03709:intron | 30.0% |
| !!! | TTGTTTTTTTGTGGATGAGT+AGG | + | chr4.3:43922056-43922075 | MS.gene03709:intron | 30.0% |
| !!! | TTTTTGTTGTTGTGAAACAC+AGG | + | chr4.3:43922551-43922570 | MS.gene03709:intron | 30.0% |
| AAAGCTGTTGCAGTTCTTAA+GGG | + | chr4.3:43921256-43921275 | MS.gene03709:CDS | 35.0% | |
| AACATAATTGCTGATGCCAA+CGG | + | chr4.3:43922462-43922481 | MS.gene03709:CDS | 35.0% | |
| AACTGGTTAGGATTGAAATG+TGG | - | chr4.3:43922393-43922412 | None:intergenic | 35.0% | |
| ACGAAAATGGAGAATTGAAC+GGG | - | chr4.3:43921347-43921366 | None:intergenic | 35.0% | |
| ACTCTTACTCAAGAAAACGA+AGG | + | chr4.3:43921304-43921323 | MS.gene03709:CDS | 35.0% | |
| ATAATGGCTACATATCACAG+GGG | + | chr4.3:43922954-43922973 | MS.gene03709:intron | 35.0% | |
| ATGTAAACAAGCATTACCGT+TGG | - | chr4.3:43922481-43922500 | None:intergenic | 35.0% | |
| ATTGAACGGGATTAAGAAGA+TGG | - | chr4.3:43921334-43921353 | None:intergenic | 35.0% | |
| CTATTGTGCTTGATTGTTTC+AGG | + | chr4.3:43924424-43924443 | MS.gene03709:intron | 35.0% | |
| CTGTGGTATGTAGAAAACTA+TGG | + | chr4.3:43923181-43923200 | MS.gene03709:intron | 35.0% | |
| CTTGGATATGAATCAATGTC+TGG | + | chr4.3:43923642-43923661 | MS.gene03709:intron | 35.0% | |
| CTTGTTGGAAACCAATATGT+GGG | - | chr4.3:43923295-43923314 | None:intergenic | 35.0% | |
| GATACTAGAGAAATTGTGAC+TGG | + | chr4.3:43923501-43923520 | MS.gene03709:intron | 35.0% | |
| GCTTATTTCCATAAGCTCTA+TGG | - | chr4.3:43921831-43921850 | None:intergenic | 35.0% | |
| GTTTATTTGAGCTTGTCTAC+CGG | - | chr4.3:43921925-43921944 | None:intergenic | 35.0% | |
| TAAATCAGAATTAGACCCAC+TGG | - | chr4.3:43922680-43922699 | None:intergenic | 35.0% | |
| TTAAGCTCGTTATCCAAACA+TGG | - | chr4.3:43921521-43921540 | None:intergenic | 35.0% | |
| TTGAACGGGATTAAGAAGAT+GGG | - | chr4.3:43921333-43921352 | None:intergenic | 35.0% | |
| ! | AAGTAGCTAACTGTGTTGTT+TGG | + | chr4.3:43922734-43922753 | MS.gene03709:intron | 35.0% |
| ! | ACAGTTAGCTACTTTCAACA+AGG | - | chr4.3:43922728-43922747 | None:intergenic | 35.0% |
| ! | ACGACTCTTTGAGAATTGTA+TGG | - | chr4.3:43923353-43923372 | None:intergenic | 35.0% |
| ! | ACTTGTTGGAAACCAATATG+TGG | - | chr4.3:43923296-43923315 | None:intergenic | 35.0% |
| ! | AGATAATGGCTACATATCAC+AGG | + | chr4.3:43922952-43922971 | MS.gene03709:intron | 35.0% |
| ! | ATACGAACATTGACTGTTGT+TGG | - | chr4.3:43922083-43922102 | None:intergenic | 35.0% |
| ! | CATAGTTTTCTACATACCAC+AGG | - | chr4.3:43923183-43923202 | None:intergenic | 35.0% |
| ! | GATAATGGCTACATATCACA+GGG | + | chr4.3:43922953-43922972 | MS.gene03709:intron | 35.0% |
| ! | TACAGTCTTTTCCGAGTATA+GGG | + | chr4.3:43923798-43923817 | MS.gene03709:intron | 35.0% |
| ! | TTACAGTCTTTTCCGAGTAT+AGG | + | chr4.3:43923797-43923816 | MS.gene03709:intron | 35.0% |
| ! | TTATTATACAGTAAGGGTGC+AGG | - | chr4.3:43924018-43924037 | None:intergenic | 35.0% |
| !! | AAGAAGAGCATGTTTTGGAT+TGG | - | chr4.3:43921947-43921966 | None:intergenic | 35.0% |
| !! | ACATTGATTCATATCCAAGC+AGG | - | chr4.3:43923641-43923660 | None:intergenic | 35.0% |
| !! | AGCTTGGTCTTGATTTATAG+CGG | + | chr4.3:43923392-43923411 | MS.gene03709:intron | 35.0% |
| !! | CAAAACTGTGTGTTACTTGT+TGG | - | chr4.3:43923310-43923329 | None:intergenic | 35.0% |
| !! | GTTGTTTTCATATGCTATCC+TGG | + | chr4.3:43921632-43921651 | MS.gene03709:intron | 35.0% |
| !! | TTTGTTCCTATGGTTTGGTT+TGG | + | chr4.3:43922322-43922341 | MS.gene03709:intron | 35.0% |
| AAATCACTTGTGAGGCTGTT+TGG | - | chr4.3:43921900-43921919 | None:intergenic | 40.0% | |
| AACTATAGTTCTTCTGCCAG+TGG | + | chr4.3:43922661-43922680 | MS.gene03709:intron | 40.0% | |
| AAGAACTGCAACAGCTTTCT+TGG | - | chr4.3:43921254-43921273 | None:intergenic | 40.0% | |
| AATCACTTGTGAGGCTGTTT+GGG | - | chr4.3:43921899-43921918 | None:intergenic | 40.0% | |
| AATCCTAACCAGTTGACACA+CGG | + | chr4.3:43922399-43922418 | MS.gene03709:CDS | 40.0% | |
| ACAGTCAATGTTCGTATCAC+TGG | + | chr4.3:43922086-43922105 | MS.gene03709:CDS | 40.0% | |
| ACTAGAGAAATTGTGACTGG+AGG | + | chr4.3:43923504-43923523 | MS.gene03709:intron | 40.0% | |
| ACTATAGTTCTTCTGCCAGT+GGG | + | chr4.3:43922662-43922681 | MS.gene03709:intron | 40.0% | |
| AGTAACAACACCTTCAACAG+TGG | - | chr4.3:43921287-43921306 | None:intergenic | 40.0% | |
| AGTATGGTGATACCACCAAT+GGG | + | chr4.3:43922242-43922261 | MS.gene03709:CDS | 40.0% | |
| ATCCAAGCAGGCAACAAAAT+GGG | - | chr4.3:43923629-43923648 | None:intergenic | 40.0% | |
| ATGCTATCCTGGAGAGATTA+TGG | + | chr4.3:43921643-43921662 | MS.gene03709:intron | 40.0% | |
| CATCAGCAATTATGTTTCCC+AGG | - | chr4.3:43922458-43922477 | None:intergenic | 40.0% | |
| CCTCTGCGTTGAAAACTTTA+TGG | + | chr4.3:43922502-43922521 | MS.gene03709:intron | 40.0% | |
| CTCATTTCCATAATCTCTCC+AGG | - | chr4.3:43921653-43921672 | None:intergenic | 40.0% | |
| CTGGAGAGATTATGGAAATG+AGG | + | chr4.3:43921651-43921670 | MS.gene03709:intron | 40.0% | |
| CTTGAAGATGACCTTGGAAA+GGG | + | chr4.3:43922824-43922843 | MS.gene03709:CDS | 40.0% | |
| GAAAGCTGTTGCAGTTCTTA+AGG | + | chr4.3:43921255-43921274 | MS.gene03709:CDS | 40.0% | |
| TACCGGAAAAATCACTTGTG+AGG | - | chr4.3:43921908-43921927 | None:intergenic | 40.0% | |
| TATCCAAGCAGGCAACAAAA+TGG | - | chr4.3:43923630-43923649 | None:intergenic | 40.0% | |
| TGAAGATGAAATCCGTCATG+CGG | + | chr4.3:43922428-43922447 | MS.gene03709:CDS | 40.0% | |
| TTCAAGCTCATGAACCACTA+AGG | - | chr4.3:43922810-43922829 | None:intergenic | 40.0% | |
| TTTATCTTGCAGCACGAGTA+TGG | + | chr4.3:43922226-43922245 | MS.gene03709:intron | 40.0% | |
| ! | AGCCTCACAAGTGATTTTTC+CGG | + | chr4.3:43921903-43921922 | MS.gene03709:intron | 40.0% |
| ! | CATGAACTTAGTTTGAGCAC+TGG | + | chr4.3:43923137-43923156 | MS.gene03709:CDS | 40.0% |
| ! | CCATAAAGTTTTCAACGCAG+AGG | - | chr4.3:43922505-43922524 | None:intergenic | 40.0% |
| ! | TTGATTGTTTCAGGTGTGGT+TGG | + | chr4.3:43924433-43924452 | MS.gene03709:intron | 40.0% |
| !! | AAGTTGGATTGGCAATACAG+TGG | + | chr4.3:43923953-43923972 | MS.gene03709:intron | 40.0% |
| AAGGGTAACTCCACTGTTGA+AGG | + | chr4.3:43921274-43921293 | MS.gene03709:CDS | 45.0% | |
| AGAAGAGAGTGAGAAGTGAG+TGG | - | chr4.3:43921136-43921155 | None:intergenic | 45.0% | |
| ATCATGCAGATACCACTCAC+TGG | + | chr4.3:43922761-43922780 | MS.gene03709:intron | 45.0% | |
| CATGAGCTTGAAGATGACCT+TGG | + | chr4.3:43922818-43922837 | MS.gene03709:CDS | 45.0% | |
| CTCTCCCAATGACTGAATTG+GGG | - | chr4.3:43922787-43922806 | None:intergenic | 45.0% | |
| CTTCAGCCAAACCAAACCAT+AGG | - | chr4.3:43922331-43922350 | None:intergenic | 45.0% | |
| CTTCTCCGATCATCTTTCTC+CGG | + | chr4.3:43921151-43921170 | MS.gene03709:CDS | 45.0% | |
| GAAGATGAAATCCGTCATGC+GGG | + | chr4.3:43922429-43922448 | MS.gene03709:CDS | 45.0% | |
| GAATTGAGGAGAGAGCTTGA+CGG | - | chr4.3:43921182-43921201 | None:intergenic | 45.0% | |
| GAGTATGGTGATACCACCAA+TGG | + | chr4.3:43922241-43922260 | MS.gene03709:CDS | 45.0% | |
| GCTCTCCCAATGACTGAATT+GGG | - | chr4.3:43922788-43922807 | None:intergenic | 45.0% | |
| GCTTGAAGATGACCTTGGAA+AGG | + | chr4.3:43922823-43922842 | MS.gene03709:CDS | 45.0% | |
| GGATGAACTAACCCTTTCCA+AGG | - | chr4.3:43922838-43922857 | None:intergenic | 45.0% | |
| GGCAACAATCGTTGACAATC+AGG | + | chr4.3:43922583-43922602 | MS.gene03709:CDS | 45.0% | |
| TTTCTTGGCAGCAGCAACAA+CGG | - | chr4.3:43921239-43921258 | None:intergenic | 45.0% | |
| ! | ATACAGTAAGGGTGCAGGTT+AGG | - | chr4.3:43924013-43924032 | None:intergenic | 45.0% |
| ! | CGCTGCATTTTCCCACATAT+TGG | + | chr4.3:43923281-43923300 | MS.gene03709:intron | 45.0% |
| ! | CTGGAATTTGGAACGCGAAA+GGG | - | chr4.3:43921209-43921228 | None:intergenic | 45.0% |
| ! | GTGCTTGATTGTTTCAGGTG+TGG | + | chr4.3:43924429-43924448 | MS.gene03709:intron | 45.0% |
| ! | TACAGTAAGGGTGCAGGTTA+GGG | - | chr4.3:43924012-43924031 | None:intergenic | 45.0% |
| ! | TTCCCATTTTGTTGCCTGCT+TGG | + | chr4.3:43923624-43923643 | MS.gene03709:intron | 45.0% |
| !! | AGTTTGAGCACTGGAAATGC+CGG | + | chr4.3:43923146-43923165 | MS.gene03709:CDS | 45.0% |
| !! | GCATGACGGATTTCATCTTC+AGG | - | chr4.3:43922429-43922448 | None:intergenic | 45.0% |
| !! | GTCTTGATTTGGGCCATGTT+TGG | + | chr4.3:43921505-43921524 | MS.gene03709:intron | 45.0% |
| AACCATGAAGCCCTGGAGTA+AGG | - | chr4.3:43922112-43922131 | None:intergenic | 50.0% | |
| AACGGAGAGAGGCTGGAATT+TGG | - | chr4.3:43921221-43921240 | None:intergenic | 50.0% | |
| ACCAATGGGTGTATCTCGAC+AGG | + | chr4.3:43922256-43922275 | MS.gene03709:CDS | 50.0% | |
| ACCACAGGCTAATCTTCCAC+CGG | - | chr4.3:43923168-43923187 | None:intergenic | 50.0% | |
| ACCTGTCGAGATACACCCAT+TGG | - | chr4.3:43922260-43922279 | None:intergenic | 50.0% | |
| ACTGGCCCCAATTCAGTCAT+TGG | + | chr4.3:43922779-43922798 | MS.gene03709:CDS | 50.0% | |
| AGACGCCGGAGAAAGATGAT+CGG | - | chr4.3:43921159-43921178 | None:intergenic | 50.0% | |
| AGGTGAAAACCATGAAGCCC+TGG | - | chr4.3:43922119-43922138 | None:intergenic | 50.0% | |
| AGTCATTGGGAGAGCCTTAG+TGG | + | chr4.3:43922793-43922812 | MS.gene03709:CDS | 50.0% | |
| ATGGCTACATATCACAGGGG+AGG | + | chr4.3:43922957-43922976 | MS.gene03709:intron | 50.0% | |
| ATTAGTGACATAGGCGACGC+AGG | - | chr4.3:43924085-43924104 | None:intergenic | 50.0% | |
| CGCGAAAGGGTTGAGAATTG+AGG | - | chr4.3:43921196-43921215 | None:intergenic | 50.0% | |
| CTGGCCCCAATTCAGTCATT+GGG | + | chr4.3:43922780-43922799 | MS.gene03709:CDS | 50.0% | |
| GCATCTGCTCGTACTTATGC+AGG | + | chr4.3:43923110-43923129 | MS.gene03709:intron | 50.0% | |
| GGCTCTCCCAATGACTGAAT+TGG | - | chr4.3:43922789-43922808 | None:intergenic | 50.0% | |
| TCTGCTCGTACTTATGCAGG+TGG | + | chr4.3:43923113-43923132 | MS.gene03709:intron | 50.0% | |
| TGTCGAGATACACCCATTGG+TGG | - | chr4.3:43922257-43922276 | None:intergenic | 50.0% | |
| ! | AGGGCTTCATGGTTTTCACC+TGG | + | chr4.3:43922118-43922137 | MS.gene03709:CDS | 50.0% |
| ! | GAGAGTGTGACGCCATTGTT+AGG | - | chr4.3:43921099-43921118 | None:intergenic | 50.0% |
| ! | GCTGGAATTTGGAACGCGAA+AGG | - | chr4.3:43921210-43921229 | None:intergenic | 50.0% |
| ! | GGCATGAAGTATCACTCACC+AGG | - | chr4.3:43922139-43922158 | None:intergenic | 50.0% |
| !! | GTATCACTGGCCTTACTCCA+GGG | + | chr4.3:43922099-43922118 | MS.gene03709:CDS | 50.0% |
| ACTGAATTGGGGCCAGTGAG+TGG | - | chr4.3:43922776-43922795 | None:intergenic | 55.0% | |
| CAGAGTGCACATCCTACACG+GGG | - | chr4.3:43924262-43924281 | None:intergenic | 55.0% | |
| CGCAGAGTGCACATCCTACA+CGG | - | chr4.3:43924264-43924283 | None:intergenic | 55.0% | |
| GAGTGAGAAGTGAGTGGCGA+AGG | - | chr4.3:43921130-43921149 | None:intergenic | 55.0% | |
| GCACCGTGTGTCAACTGGTT+AGG | - | chr4.3:43922405-43922424 | None:intergenic | 55.0% | |
| GCAGAGTGCACATCCTACAC+GGG | - | chr4.3:43924263-43924282 | None:intergenic | 55.0% | |
| ! | GTGAAACACAGGCGTTGCAG+AGG | + | chr4.3:43922562-43922581 | MS.gene03709:intron | 55.0% |
| !! | CGTATCACTGGCCTTACTCC+AGG | + | chr4.3:43922098-43922117 | MS.gene03709:CDS | 55.0% |
| !! | TTGAGCACTGGAAATGCCGG+TGG | + | chr4.3:43923149-43923168 | MS.gene03709:CDS | 55.0% |
| AATCCGTCATGCGGGTGACC+TGG | + | chr4.3:43922437-43922456 | MS.gene03709:CDS | 60.0% | |
| AGAGAGCTTGACGGAGACGC+CGG | - | chr4.3:43921173-43921192 | None:intergenic | 60.0% | |
| ATCCGTCATGCGGGTGACCT+GGG | + | chr4.3:43922438-43922457 | MS.gene03709:CDS | 60.0% | |
| CAGCAACAACGGAGAGAGGC+TGG | - | chr4.3:43921228-43921247 | None:intergenic | 60.0% | |
| GCAGCAGCAACAACGGAGAG+AGG | - | chr4.3:43921232-43921251 | None:intergenic | 60.0% | |
| GGCCTTACTCCAGGGCTTCA+TGG | + | chr4.3:43922107-43922126 | MS.gene03709:CDS | 60.0% | |
| GGGTTAAACCTGCCCCGTGT+AGG | + | chr4.3:43924247-43924266 | MS.gene03709:intron | 60.0% | |
| TGACATAGGCGACGCAGGCA+TGG | - | chr4.3:43924080-43924099 | None:intergenic | 60.0% | |
| TTCCCAGGTCACCCGCATGA+CGG | - | chr4.3:43922443-43922462 | None:intergenic | 60.0% | |
| !! | CAGGAGCACCGTGTGTCAAC+TGG | - | chr4.3:43922410-43922429 | None:intergenic | 60.0% |
| !! | GCCGGTGGAAGATTAGCCTG+TGG | + | chr4.3:43923164-43923183 | MS.gene03709:CDS | 60.0% |
| GTGCACATCCTACACGGGGC+AGG | - | chr4.3:43924258-43924277 | None:intergenic | 65.0% | |
| ACGCAGGCATGGCGCAGAGC+AGG | - | chr4.3:43924069-43924088 | None:intergenic | 70.0% | |
| GGCATGGCGCAGAGCAGGTC+AGG | - | chr4.3:43924064-43924083 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.3 | gene | 43921091 | 43924471 | 43921091 | ID=MS.gene03709 |
| chr4.3 | mRNA | 43921091 | 43924471 | 43921091 | ID=MS.gene03709.t1;Parent=MS.gene03709 |
| chr4.3 | exon | 43921091 | 43921325 | 43921091 | ID=MS.gene03709.t1.exon1;Parent=MS.gene03709.t1 |
| chr4.3 | CDS | 43921091 | 43921325 | 43921091 | ID=cds.MS.gene03709.t1;Parent=MS.gene03709.t1 |
| chr4.3 | exon | 43922078 | 43922139 | 43922078 | ID=MS.gene03709.t1.exon2;Parent=MS.gene03709.t1 |
| chr4.3 | CDS | 43922078 | 43922139 | 43922078 | ID=cds.MS.gene03709.t1;Parent=MS.gene03709.t1 |
| chr4.3 | exon | 43922238 | 43922277 | 43922238 | ID=MS.gene03709.t1.exon3;Parent=MS.gene03709.t1 |
| chr4.3 | CDS | 43922238 | 43922277 | 43922238 | ID=cds.MS.gene03709.t1;Parent=MS.gene03709.t1 |
| chr4.3 | exon | 43922388 | 43922483 | 43922388 | ID=MS.gene03709.t1.exon4;Parent=MS.gene03709.t1 |
| chr4.3 | CDS | 43922388 | 43922483 | 43922388 | ID=cds.MS.gene03709.t1;Parent=MS.gene03709.t1 |
| chr4.3 | exon | 43922573 | 43922604 | 43922573 | ID=MS.gene03709.t1.exon5;Parent=MS.gene03709.t1 |
| chr4.3 | CDS | 43922573 | 43922604 | 43922573 | ID=cds.MS.gene03709.t1;Parent=MS.gene03709.t1 |
| chr4.3 | exon | 43922770 | 43922845 | 43922770 | ID=MS.gene03709.t1.exon6;Parent=MS.gene03709.t1 |
| chr4.3 | CDS | 43922770 | 43922845 | 43922770 | ID=cds.MS.gene03709.t1;Parent=MS.gene03709.t1 |
| chr4.3 | exon | 43923132 | 43923185 | 43923132 | ID=MS.gene03709.t1.exon7;Parent=MS.gene03709.t1 |
| chr4.3 | CDS | 43923132 | 43923185 | 43923132 | ID=cds.MS.gene03709.t1;Parent=MS.gene03709.t1 |
| chr4.3 | exon | 43924446 | 43924471 | 43924446 | ID=MS.gene03709.t1.exon8;Parent=MS.gene03709.t1 |
| chr4.3 | CDS | 43924446 | 43924471 | 43924446 | ID=cds.MS.gene03709.t1;Parent=MS.gene03709.t1 |
| Gene Sequence |
| Protein sequence |
