AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene037391

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene037391.t1 MTR_1g115210 96.095 461 18 0 26 486 26 486 0.0 872
MS.gene037391.t1 MTR_1g039270 65.880 466 124 6 32 486 28 469 0.0 598
MS.gene037391.t1 MTR_1g111350 49.140 407 194 5 82 486 72 467 1.38e-132 392
MS.gene037391.t1 MTR_7g117430 46.697 439 222 9 54 486 52 484 4.27e-124 371
MS.gene037391.t1 MTR_6g085010 40.159 503 258 11 1 486 15 491 2.08e-113 343
MS.gene037391.t1 MTR_8g103880 38.547 358 211 6 126 479 96 448 4.53e-88 277
MS.gene037391.t1 MTR_3g097150 37.292 421 237 12 78 486 41 446 5.86e-84 266
MS.gene037391.t1 MTR_4g007740 35.147 441 247 12 67 486 55 477 2.86e-72 237
MS.gene037391.t1 MTR_3g053710 39.167 360 196 10 143 486 114 466 1.10e-71 235
MS.gene037391.t1 MTR_3g046300 33.638 437 249 9 81 486 32 458 3.93e-71 233
MS.gene037391.t1 MTR_5g044770 33.176 425 256 12 73 486 21 428 6.83e-69 226
MS.gene037391.t1 MTR_2g028190 32.883 444 245 16 79 486 25 451 2.71e-67 223
MS.gene037391.t1 MTR_3g053980 40.000 360 197 8 138 486 134 485 1.22e-66 222
MS.gene037391.t1 MTR_8g096990 32.000 425 262 12 73 486 21 429 2.95e-66 219
MS.gene037391.t1 MTR_5g091130 30.108 558 313 16 1 486 1 553 1.05e-65 221
MS.gene037391.t1 MTR_5g080890 32.477 428 258 11 73 486 21 431 1.07e-64 216
MS.gene037391.t1 MTR_5g080960 32.710 428 257 11 73 486 21 431 7.34e-64 213
MS.gene037391.t1 MTR_8g038280 31.429 420 257 12 82 486 30 433 3.88e-61 206
MS.gene037391.t1 MTR_6g090290 32.401 429 260 11 73 486 21 434 6.27e-58 198
MS.gene037391.t1 MTR_2g059460 32.990 388 225 12 117 486 34 404 2.50e-56 193
MS.gene037391.t1 MTR_0036s0110 30.000 430 255 16 82 486 32 440 2.68e-55 191
MS.gene037391.t1 MTR_2g059490 34.819 359 208 13 146 486 58 408 9.06e-55 189
MS.gene037391.t1 MTR_5g038360 31.354 421 259 15 82 486 28 434 3.00e-54 188
MS.gene037391.t1 MTR_8g038310 30.733 423 251 12 73 486 22 411 7.46e-54 186
MS.gene037391.t1 MTR_2g067830 32.464 422 248 18 84 486 1 404 1.47e-53 186
MS.gene037391.t1 MTR_0036s0070 29.621 422 254 14 81 486 30 424 3.43e-53 185
MS.gene037391.t1 MTR_3g028120 33.983 359 213 12 144 486 86 436 6.88e-53 184
MS.gene037391.t1 MTR_6g088760 31.500 400 234 14 107 486 46 425 8.53e-52 183
MS.gene037391.t1 MTR_4g109760 33.898 354 207 11 147 486 56 396 4.70e-51 179
MS.gene037391.t1 MTR_5g008070 33.613 357 212 10 144 486 79 424 4.15e-50 177
MS.gene037391.t1 MTR_5g008150 33.613 357 214 11 145 486 62 410 4.15e-50 176
MS.gene037391.t1 MTR_0036s0050 29.844 449 256 16 66 486 16 433 5.41e-50 177
MS.gene037391.t1 MTR_5g008110 32.865 356 217 11 145 486 66 413 2.08e-49 174
MS.gene037391.t1 MTR_8g038250 29.412 425 257 10 73 486 21 413 2.35e-49 174
MS.gene037391.t1 MTR_1g037630 34.571 350 211 8 144 486 90 428 6.54e-48 171
MS.gene037391.t1 MTR_0024s0040 32.203 354 217 12 147 486 64 408 8.09e-48 170
MS.gene037391.t1 MTR_3g014290 34.571 350 211 8 144 486 78 416 9.40e-48 170
MS.gene037391.t1 MTR_2g105300 30.788 419 231 19 84 483 1 379 1.73e-46 166
MS.gene037391.t1 MTR_5g044570 31.407 398 220 18 108 486 46 409 1.19e-44 162
MS.gene037391.t1 MTR_8g039540 29.878 492 280 12 1 486 1 433 1.74e-44 162
MS.gene037391.t1 MTR_4g045857 40.092 217 117 6 146 349 58 274 5.64e-44 157
MS.gene037391.t1 MTR_2g055840 31.165 369 216 12 147 486 14 373 3.22e-42 154
MS.gene037391.t1 MTR_3g100500 32.500 360 225 8 136 486 87 437 5.20e-42 155
MS.gene037391.t1 MTR_2g070430 28.571 378 222 10 144 484 85 451 3.70e-37 142
MS.gene037391.t1 MTR_1g060750 27.701 361 210 14 143 486 48 374 1.37e-36 139
MS.gene037391.t1 MTR_7g102750 28.571 392 235 14 130 486 59 440 6.36e-33 131
MS.gene037391.t1 MTR_3g068000 29.474 380 212 18 149 486 76 441 6.41e-33 130
MS.gene037391.t1 MTR_2g063110 26.059 472 278 15 79 486 44 508 3.51e-32 129
MS.gene037391.t1 MTR_4g100990 27.970 404 221 16 146 486 74 470 8.52e-32 127
MS.gene037391.t1 MTR_7g102750 29.155 367 215 14 130 461 59 415 2.26e-31 125
MS.gene037391.t1 MTR_7g105850 28.645 391 216 14 145 486 89 465 7.79e-31 124
MS.gene037391.t1 MTR_7g062360 30.769 377 209 17 149 486 62 425 1.17e-30 124
MS.gene037391.t1 MTR_5g012490 26.617 402 228 15 146 486 74 469 1.63e-30 124
MS.gene037391.t1 MTR_1g061940 28.087 413 253 14 103 481 37 439 2.12e-29 121
MS.gene037391.t1 MTR_2g084550 28.852 357 198 16 145 463 76 414 8.81e-29 119
MS.gene037391.t1 MTR_4g095270 26.741 359 234 11 144 486 78 423 1.16e-28 119
MS.gene037391.t1 MTR_4g095270 26.741 359 234 11 144 486 78 423 1.71e-28 119
MS.gene037391.t1 MTR_5g016260 26.050 357 239 10 144 486 86 431 3.60e-28 118
MS.gene037391.t1 MTR_4g056420 27.346 373 230 15 144 486 75 436 4.25e-28 117
MS.gene037391.t1 MTR_3g065160 27.123 365 224 15 149 486 77 426 5.26e-28 116
MS.gene037391.t1 MTR_5g016260 26.050 357 239 10 144 486 86 431 6.89e-28 117
MS.gene037391.t1 MTR_5g077850 27.198 364 229 15 149 486 84 437 2.79e-27 114
MS.gene037391.t1 MTR_7g021510 25.455 385 236 13 138 486 64 433 1.41e-26 112
MS.gene037391.t1 MTR_5g008090 29.836 305 183 11 201 486 20 312 3.96e-26 108
MS.gene037391.t1 MTR_1g078240 25.916 382 238 14 138 486 61 430 1.66e-25 109
MS.gene037391.t1 MTR_7g080230 25.532 376 235 14 138 481 63 425 5.90e-25 107
MS.gene037391.t1 MTR_1g078240 25.916 382 237 15 138 486 61 429 2.28e-24 106
MS.gene037391.t1 MTR_1g078240 28.308 325 198 13 138 437 61 375 2.71e-24 104
MS.gene037391.t1 MTR_5g022880 26.579 380 208 16 147 486 113 461 1.93e-22 100
MS.gene037391.t1 MTR_6g084710 25.258 388 233 17 137 486 182 550 3.05e-22 100
MS.gene037391.t1 MTR_8g075010 26.431 367 225 13 147 486 101 449 6.94e-21 95.9
MS.gene037391.t1 MTR_8g094590 24.731 372 231 15 145 486 72 424 9.43e-21 94.7
MS.gene037391.t1 MTR_6g084710 27.237 257 163 9 137 379 182 428 2.25e-20 94.4
MS.gene037391.t1 MTR_5g077920 26.741 359 229 14 149 481 71 421 4.05e-20 93.2
MS.gene037391.t1 MTR_8g075090 27.346 373 212 20 147 486 113 459 4.56e-20 93.6
MS.gene037391.t1 MTR_8g075090 27.346 373 212 20 147 486 113 459 5.20e-20 92.8
MS.gene037391.t1 MTR_5g061690 25.490 408 257 14 103 486 65 449 5.33e-20 93.2
MS.gene037391.t1 MTR_3g096930 25.000 376 224 15 145 486 83 434 1.77e-19 91.3
MS.gene037391.t1 MTR_8g094590 28.175 252 149 10 145 382 72 305 3.59e-19 88.6
MS.gene037391.t1 MTR_8g094590 28.175 252 149 10 145 382 72 305 7.16e-19 89.0
MS.gene037391.t1 MTR_8g075090 27.586 348 193 20 147 461 113 434 6.22e-18 86.7
MS.gene037391.t1 MTR_2g022450 24.747 396 223 16 141 481 35 410 3.34e-17 84.0
MS.gene037391.t1 MTR_4g023650 25.575 391 227 19 137 486 52 419 4.66e-17 83.6
MS.gene037391.t1 MTR_3g087780 24.590 366 235 11 147 486 100 450 9.38e-17 83.2
MS.gene037391.t1 MTR_1g029810 25.203 369 224 15 145 481 56 404 1.50e-16 82.0
MS.gene037391.t1 MTR_1g029810 25.203 369 224 15 145 481 56 404 2.60e-16 81.6
MS.gene037391.t1 MTR_3g006820 23.514 387 246 17 132 486 44 412 4.41e-16 80.5
MS.gene037391.t1 MTR_4g023630 24.422 389 234 17 137 486 52 419 6.87e-16 80.1
MS.gene037391.t1 MTR_4g117090 23.587 407 222 17 146 481 49 437 3.02e-12 68.9
MS.gene037391.t1 MTR_7g080230 23.214 336 213 14 178 481 33 355 7.41e-11 64.3
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene037391.t1 AT3G20015 66.667 462 132 3 31 486 25 470 0.0 594
MS.gene037391.t1 AT3G18490 46.092 499 231 10 11 486 17 500 1.19e-135 401
MS.gene037391.t1 AT1G25510 44.586 471 236 8 33 486 21 483 2.97e-130 387
MS.gene037391.t1 AT1G01300 48.434 415 200 7 82 486 74 484 5.05e-123 368
MS.gene037391.t1 AT3G61820 45.863 423 209 7 82 486 63 483 2.47e-119 358
MS.gene037391.t1 AT5G10770 38.389 422 239 10 79 486 59 473 4.47e-85 270
MS.gene037391.t1 AT5G10760 36.804 413 246 8 79 486 62 464 3.62e-74 241
MS.gene037391.t1 AT2G03200 37.119 361 205 10 143 486 103 458 5.06e-73 238
MS.gene037391.t1 AT1G79720 34.360 422 243 8 82 481 68 477 7.70e-66 220
MS.gene037391.t1 AT5G33340 34.772 417 241 13 84 486 35 434 1.82e-65 218
MS.gene037391.t1 AT1G64830 34.048 420 243 14 82 486 28 428 4.91e-63 211
MS.gene037391.t1 AT3G25700 33.684 380 224 11 134 486 71 449 6.25e-60 204
MS.gene037391.t1 AT2G42980 31.670 461 277 13 63 486 65 524 7.63e-59 202
MS.gene037391.t1 AT3G59080 32.187 407 249 9 105 486 128 532 1.84e-58 202
MS.gene037391.t1 AT1G09750 33.247 388 238 10 110 486 71 448 3.01e-56 194
MS.gene037391.t1 AT2G28040 32.479 351 203 8 146 486 55 381 4.28e-54 186
MS.gene037391.t1 AT3G54400 32.258 434 259 14 63 486 16 424 7.28e-54 187
MS.gene037391.t1 AT2G28040 32.479 351 203 8 146 486 64 390 7.30e-54 186
MS.gene037391.t1 AT2G28010 31.362 389 226 9 107 486 35 391 2.02e-51 179
MS.gene037391.t1 AT2G28030 32.378 349 205 8 147 486 61 387 7.73e-51 178
MS.gene037391.t1 AT3G59080 30.923 401 226 8 105 486 128 496 1.29e-50 180
MS.gene037391.t1 AT1G31450 28.873 426 267 13 82 486 31 441 7.60e-48 171
MS.gene037391.t1 AT2G28220 31.549 355 204 11 147 486 67 397 1.07e-45 164
MS.gene037391.t1 AT2G35615 27.163 416 266 15 82 473 28 430 7.49e-45 163
MS.gene037391.t1 AT5G07030 33.144 353 216 9 144 486 112 454 2.79e-44 162
MS.gene037391.t1 AT2G28225 29.296 355 212 11 147 486 67 397 3.19e-41 152
MS.gene037391.t1 AT4G30040 31.503 346 207 11 147 473 85 419 4.43e-41 152
MS.gene037391.t1 AT2G23945 28.241 432 251 18 78 473 27 435 1.46e-40 152
MS.gene037391.t1 AT3G12700 28.404 426 270 14 81 486 50 460 5.84e-38 144
MS.gene037391.t1 AT3G02740 28.533 368 226 14 145 486 83 439 3.73e-34 134
MS.gene037391.t1 AT3G02740 28.415 366 225 14 147 486 10 364 8.58e-34 132
MS.gene037391.t1 AT4G30030 30.836 347 196 15 147 470 78 403 1.24e-33 132
MS.gene037391.t1 AT2G36670 29.279 444 258 18 77 486 36 457 1.91e-33 132
MS.gene037391.t1 AT2G39710 30.053 376 211 17 149 485 67 429 3.99e-33 130
MS.gene037391.t1 AT2G36670 30.163 368 219 14 147 486 34 391 5.88e-33 130
MS.gene037391.t1 AT2G36670 30.163 368 219 14 147 486 34 391 5.88e-33 130
MS.gene037391.t1 AT2G36670 28.731 449 259 18 77 486 36 462 8.31e-33 131
MS.gene037391.t1 AT5G43100 28.177 362 224 13 144 486 73 417 3.05e-32 130
MS.gene037391.t1 AT5G43100 28.177 362 224 13 144 486 73 417 3.39e-32 129
MS.gene037391.t1 AT5G22850 27.930 401 239 18 95 463 35 417 4.56e-30 123
MS.gene037391.t1 AT5G36260 25.876 371 233 13 145 486 76 433 9.76e-30 122
MS.gene037391.t1 AT1G66180 27.624 362 229 13 149 486 74 426 1.79e-29 120
MS.gene037391.t1 AT5G02190 29.521 376 205 19 156 486 82 442 3.23e-28 117
MS.gene037391.t1 AT5G37540 27.123 365 231 13 149 486 82 438 4.79e-28 116
MS.gene037391.t1 AT1G05840 27.394 376 224 15 145 486 78 438 8.88e-28 116
MS.gene037391.t1 AT3G50050 27.322 366 224 12 144 486 90 436 4.73e-27 115
MS.gene037391.t1 AT1G65240 25.067 371 233 14 145 486 72 426 3.40e-26 111
MS.gene037391.t1 AT5G45120 24.638 414 242 16 136 486 72 478 4.50e-25 108
MS.gene037391.t1 AT3G52500 25.355 493 279 19 42 486 16 467 1.24e-24 107
MS.gene037391.t1 AT1G49050 25.355 422 242 19 113 486 172 568 1.34e-24 107
MS.gene037391.t1 AT1G49050 28.146 302 181 13 113 393 172 458 2.18e-24 106
MS.gene037391.t1 AT1G08210 27.568 370 229 14 145 486 130 488 8.63e-24 105
MS.gene037391.t1 AT3G25700 38.926 149 77 4 134 268 71 219 8.82e-24 102
MS.gene037391.t1 AT1G08210 27.568 370 229 14 145 486 82 440 9.02e-24 104
MS.gene037391.t1 AT1G08210 27.568 370 229 14 145 486 116 474 9.79e-24 104
MS.gene037391.t1 AT1G77480 27.737 411 232 20 111 486 39 419 2.15e-23 102
MS.gene037391.t1 AT1G49050 25.000 388 221 18 147 486 30 395 3.21e-23 102
MS.gene037391.t1 AT1G77480 27.737 411 232 20 111 486 39 419 4.69e-23 102
MS.gene037391.t1 AT1G08210 28.829 333 199 13 145 450 82 403 4.85e-23 102
MS.gene037391.t1 AT4G12920 26.425 386 227 12 112 473 22 374 1.77e-22 99.8
MS.gene037391.t1 AT3G51350 26.301 365 207 15 147 481 102 434 1.91e-20 94.7
MS.gene037391.t1 AT2G17760 26.301 365 225 16 147 486 104 449 8.92e-20 92.4
MS.gene037391.t1 AT3G51340 27.957 372 209 18 147 486 103 447 9.01e-20 92.4
MS.gene037391.t1 AT4G16563 27.182 401 205 17 164 486 100 491 1.56e-19 91.7
MS.gene037391.t1 AT4G35880 24.728 368 226 13 147 486 107 451 8.59e-19 89.7
MS.gene037391.t1 AT1G44130 26.178 382 213 18 145 486 47 399 5.90e-18 86.3
MS.gene037391.t1 AT4G35880 25.948 343 203 14 147 461 107 426 5.98e-18 86.7
MS.gene037391.t1 AT3G51360 23.661 448 281 17 73 486 25 445 8.27e-18 86.3
MS.gene037391.t1 AT3G51360 23.661 448 281 17 73 486 15 435 1.14e-17 85.9
MS.gene037391.t1 AT3G51340 27.707 314 174 14 147 431 103 392 1.48e-17 85.1
MS.gene037391.t1 AT4G33490 24.934 377 225 15 145 486 58 411 1.51e-17 85.1
MS.gene037391.t1 AT3G42550 23.002 413 243 16 95 486 31 389 2.94e-17 84.3
MS.gene037391.t1 AT3G51360 24.113 423 260 17 73 461 25 420 3.80e-17 84.0
MS.gene037391.t1 AT4G33490 30.078 256 138 12 145 381 55 288 4.90e-17 83.6
MS.gene037391.t1 AT3G51360 24.113 423 260 17 73 461 15 410 5.03e-17 83.6
MS.gene037391.t1 AT3G51360 24.156 385 234 15 73 426 25 382 7.47e-17 82.8
MS.gene037391.t1 AT3G51360 24.156 385 234 15 73 426 15 372 1.30e-16 82.0
MS.gene037391.t1 AT3G51360 23.978 367 232 14 147 486 5 351 8.06e-16 79.7
MS.gene037391.t1 AT3G51340 26.804 291 163 13 147 408 103 372 3.05e-15 77.8
MS.gene037391.t1 AT3G51340 26.804 291 163 13 147 408 103 372 3.05e-15 78.6
MS.gene037391.t1 AT3G51360 24.189 339 201 13 73 382 25 336 1.22e-14 75.5
MS.gene037391.t1 AT5G48430 28.448 232 147 7 265 481 161 388 1.02e-12 70.1

Find 174 sgRNAs with CRISPR-Local

Find 212 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATTCGGGCAGTGACATTATT+TGG 0.112279 1.3:+78272104 MS.gene037391:CDS
ATTTCTGCCTTTAACATTTC+CGG 0.183134 1.3:+78271878 MS.gene037391:CDS
GGCTTTCGGGTCTTGGAGTT+GGG 0.185714 1.3:+78272614 MS.gene037391:CDS
TTCGGGTCGGGTGTGGTTTC+GGG 0.195700 1.3:+78272004 MS.gene037391:CDS
GCATTTGCTCCTTCTTCTTC+AGG 0.218132 1.3:+78272955 MS.gene037391:CDS
AATGGATACTCCTGATGTTT+TGG 0.222815 1.3:-78272791 None:intergenic
GTTCGGGTCGGGTGTGGTTT+CGG 0.228106 1.3:+78272003 MS.gene037391:CDS
GCCGGCTTACAATGCATTTC+GGG 0.244466 1.3:+78272738 MS.gene037391:CDS
GGTATGTTTGTTGGAGCAGC+TGG 0.262458 1.3:+78272391 MS.gene037391:CDS
TCATCTGGGTCGCTAGAATT+TGG 0.263511 1.3:+78272514 MS.gene037391:CDS
TGCCGTTATGAGGTTTCTTA+TGG 0.268217 1.3:+78272268 MS.gene037391:CDS
CGCCGGCTTACAATGCATTT+CGG 0.291370 1.3:+78272737 MS.gene037391:CDS
GGATGGAGCTAATGGGTATA+TGG 0.294523 1.3:+78273026 MS.gene037391:CDS
TATATCGGGCTTTCGGGTCT+TGG 0.310043 1.3:+78272607 MS.gene037391:CDS
GGGCTTTCGGGTCTTGGAGT+TGG 0.316663 1.3:+78272613 MS.gene037391:CDS
CGCCAGTCTGACCACCTAAT+TGG 0.318952 1.3:-78272453 None:intergenic
GCAGCTGGGTTGTTGGGTCT+TGG 0.325606 1.3:+78272406 MS.gene037391:CDS
TCTTCAGGACTTTCCATCAT+AGG 0.325784 1.3:+78272970 MS.gene037391:CDS
AAACGGGTTTGTGACGGTTC+GGG 0.329915 1.3:+78272834 MS.gene037391:CDS
AAATTTCAATCCCTTCTTGC+TGG 0.331540 1.3:-78272999 None:intergenic
GAATGGAGAGAGATTCTAAA+AGG 0.332342 1.3:+78271927 MS.gene037391:CDS
TTGCTGGATGTTTCCTATGA+TGG 0.341457 1.3:-78272983 None:intergenic
AAATGAATTGGGTGAGGGAG+GGG 0.345584 1.3:+78272675 MS.gene037391:CDS
ACCCGAGAAATAAAATGATA+TGG 0.346874 1.3:-78272863 None:intergenic
GCTTTCGGGTCTTGGAGTTG+GGG 0.348212 1.3:+78272615 MS.gene037391:CDS
CCAATACGTGGTTATTGATT+CGG 0.350961 1.3:+78272087 MS.gene037391:CDS
ATTTCAGTGGATGGAGCTAA+TGG 0.353637 1.3:+78273018 MS.gene037391:CDS
GCTAATGGGTATATGGGATT+TGG 0.357251 1.3:+78273033 MS.gene037391:CDS
GGGTTGTTGGGTCTTGGAAG+TGG 0.359095 1.3:+78272412 MS.gene037391:CDS
CTTTCGGGTCTTGGAGTTGG+GGG 0.359398 1.3:+78272616 MS.gene037391:CDS
GACACATGTTATGATTTAAA+CGG 0.361043 1.3:+78272817 MS.gene037391:CDS
GAGCCCGTGGGTTATGAATC+AGG 0.367672 1.3:-78272573 None:intergenic
TTCGGGCAGTGACATTATTT+GGG 0.368954 1.3:+78272105 MS.gene037391:CDS
TAGTTATTGTTTAGTGAGTC+GGG 0.376613 1.3:+78272483 MS.gene037391:CDS
ATGATCACCGGAAATGTTAA+AGG 0.378209 1.3:-78271885 None:intergenic
CAATACGTGGTTATTGATTC+GGG 0.383620 1.3:+78272088 MS.gene037391:CDS
GTCGGGTGTGGTTTCGGGTA+TGG 0.397951 1.3:+78272009 MS.gene037391:CDS
GGTTGTTGGGTCTTGGAAGT+GGG 0.398428 1.3:+78272413 MS.gene037391:CDS
TAAACGGGTTTGTGACGGTT+CGG 0.403107 1.3:+78272833 MS.gene037391:CDS
GCCGTTATGAGGTTTCTTAT+GGG 0.404335 1.3:+78272269 MS.gene037391:CDS
AGTCGGGGCACTGAATCATC+TGG 0.406241 1.3:+78272499 MS.gene037391:CDS
ACACATGTTATGATTTAAAC+GGG 0.407880 1.3:+78272818 MS.gene037391:CDS
GTTGGAGCAGCTGGGTTGTT+GGG 0.408232 1.3:+78272400 MS.gene037391:CDS
CTCCATTCGTGCATTGAAAC+GGG 0.418052 1.3:-78271912 None:intergenic
GGGGTTGAGGGTTCCTATAT+CGG 0.418943 1.3:+78272636 MS.gene037391:CDS
TGTTGGAGCAGCTGGGTTGT+TGG 0.420595 1.3:+78272399 MS.gene037391:CDS
TCTCCATTCGTGCATTGAAA+CGG 0.421868 1.3:-78271913 None:intergenic
TGCCCTTGAGACTGTTACAT+TGG 0.427294 1.3:+78272318 MS.gene037391:CDS
GGTATGAAACAGAGGAGTTC+GGG 0.428364 1.3:+78271987 MS.gene037391:CDS
AATACAAGCAACCATGGTAT+TGG 0.429601 1.3:+78271598 None:intergenic
GGAGAGTATTTCGTAAGAAT+AGG 0.441186 1.3:+78272043 MS.gene037391:CDS
AGGAACCAGGGTATGTTTGT+TGG 0.444845 1.3:+78272382 MS.gene037391:CDS
CGGGTGTGGGCATAGGAACC+AGG 0.446262 1.3:+78272369 MS.gene037391:CDS
TTAGTTATTGTTTAGTGAGT+CGG 0.448984 1.3:+78272482 MS.gene037391:CDS
CGGCGAATCGCCGGTAGCGT+CGG 0.452344 1.3:+78271965 MS.gene037391:CDS
TATGAGGTTTCTTATGGGGA+TGG 0.454223 1.3:+78272274 MS.gene037391:CDS
GTGATCCGAAACGTGGCTAT+CGG 0.454470 1.3:+78272349 MS.gene037391:CDS
CGGTGCCTGTGGGTGCTTCG+TGG 0.456663 1.3:+78272545 MS.gene037391:CDS
GCCCTTGAGACTGTTACATT+GGG 0.458217 1.3:+78272319 MS.gene037391:CDS
CGAAACGTGGCTATCGGGTG+TGG 0.461598 1.3:+78272355 MS.gene037391:CDS
CCGAATCAATAACCACGTAT+TGG 0.463017 1.3:-78272087 None:intergenic
GCCGTTGTGCGGCGAATCGC+CGG 0.464829 1.3:+78271956 MS.gene037391:CDS
GGGGATTCTTCATCTTATGC+TGG 0.467858 1.3:+78272184 MS.gene037391:CDS
GCTAGAATTTGGACGAGAAT+CGG 0.468088 1.3:+78272525 MS.gene037391:CDS
GGGTATGAAACAGAGGAGTT+CGG 0.473494 1.3:+78271986 MS.gene037391:CDS
TGATCCGAAACGTGGCTATC+GGG 0.475223 1.3:+78272350 MS.gene037391:CDS
TCACATGACTTAACATACAT+TGG 0.475622 1.3:-78273058 None:intergenic
GTCGGATTGGTGATAACATT+GGG 0.477208 1.3:-78272146 None:intergenic
GGCGAATCGCCGGTAGCGTC+GGG 0.478355 1.3:+78271966 MS.gene037391:CDS
ATGAGGTTTCTTATGGGGAT+GGG 0.479148 1.3:+78272275 MS.gene037391:CDS
GATGGAGCTAATGGGTATAT+GGG 0.482882 1.3:+78273027 MS.gene037391:CDS
GGTTGTTTGGTTGTATGAAA+AGG 0.483040 1.3:-78271761 None:intergenic
GAGGTAGTGAGAAAGAGAAA+TGG 0.484309 1.3:-78271635 None:intergenic
TGAAGGTGATGAGGTTAGAA+TGG 0.484969 1.3:-78271663 None:intergenic
TTCATTCATGGACTCAGTGT+TGG 0.489078 1.3:-78271801 None:intergenic
ACGTTGATGCGTTGGAAATG+AGG 0.491458 1.3:-78271701 None:intergenic
TGAAGGGAGGTGCCGTTATG+AGG 0.492322 1.3:+78272258 MS.gene037391:CDS
TAAATGAATTGGGTGAGGGA+GGG 0.493214 1.3:+78272674 MS.gene037391:CDS
TGGCTATCGGGTGTGGGCAT+AGG 0.493489 1.3:+78272362 MS.gene037391:CDS
TTTCGGGTCTTGGAGTTGGG+GGG 0.497028 1.3:+78272617 MS.gene037391:CDS
GGTGCCTGTGGGTGCTTCGT+GGG 0.499303 1.3:+78272546 MS.gene037391:CDS
TGGTGATAACATTGGGTACA+TGG 0.501291 1.3:-78272139 None:intergenic
TTTCAGTGGATGGAGCTAAT+GGG 0.503081 1.3:+78273019 MS.gene037391:CDS
GAAACAGAGGAGTTCGGGTC+GGG 0.503157 1.3:+78271992 MS.gene037391:CDS
TTTGTTTCACGTTGATGCGT+TGG 0.503219 1.3:-78271709 None:intergenic
GGGATTGAAATTTCAGTGGA+TGG 0.503329 1.3:+78273009 MS.gene037391:CDS
CACATGACTTAACATACATT+GGG 0.503993 1.3:-78273057 None:intergenic
CTAGCTGGAAGGGTCAATAT+AGG 0.505927 1.3:-78272889 None:intergenic
TATTTCGTAAGAATAGGAGT+TGG 0.506635 1.3:+78272049 MS.gene037391:CDS
AGAGGAGTTCGGGTCGGGTG+TGG 0.509324 1.3:+78271997 MS.gene037391:CDS
GGCCAATTAGGTGGTCAGAC+TGG 0.513423 1.3:+78272451 MS.gene037391:CDS
CGTTGATGCGTTGGAAATGA+GGG 0.514491 1.3:-78271700 None:intergenic
GGAGGGGTGGTCATGGACAC+CGG 0.514573 1.3:+78272691 MS.gene037391:CDS
CACACCCGATAGCCACGTTT+CGG 0.514707 1.3:-78272354 None:intergenic
GGGTGAGGGAGGGGTGGTCA+TGG 0.515063 1.3:+78272684 MS.gene037391:CDS
TCGGTTAAATGAATTGGGTG+AGG 0.515639 1.3:+78272669 MS.gene037391:CDS
TTAAATGAATTGGGTGAGGG+AGG 0.517316 1.3:+78272673 MS.gene037391:CDS
GGAATTAAGAAGTTCCTAGC+TGG 0.517708 1.3:-78272904 None:intergenic
GCATAAGATGAAGAATCCCC+CGG 0.520903 1.3:-78272181 None:intergenic
GAGAAATAAAATGATATGGT+TGG 0.523017 1.3:-78272859 None:intergenic
GGGATGGGTCCTATACTAAA+GGG 0.523693 1.3:+78272290 MS.gene037391:CDS
CCGTTATGAGGTTTCTTATG+GGG 0.528759 1.3:+78272270 MS.gene037391:CDS
TGTAGCCGTGTGGAGAATGC+AGG 0.531669 1.3:+78272229 MS.gene037391:CDS
CGGTTAAATGAATTGGGTGA+GGG 0.533268 1.3:+78272670 MS.gene037391:CDS
TCCCGAAATGCATTGTAAGC+CGG 0.534505 1.3:-78272739 None:intergenic
TAACCTCGTCACGGCAGTGC+CGG 0.534510 1.3:-78272710 None:intergenic
TTTCCCTGATTCATAACCCA+CGG 0.537283 1.3:+78272569 MS.gene037391:CDS
TGAATTGGGTGAGGGAGGGG+TGG 0.537828 1.3:+78272678 MS.gene037391:CDS
GGGGATGGGTCCTATACTAA+AGG 0.538590 1.3:+78272289 MS.gene037391:CDS
GGCAAGTGTCCCTTTAGTAT+AGG 0.540324 1.3:-78272299 None:intergenic
CTTGAGACTGTTACATTGGG+AGG 0.541400 1.3:+78272322 MS.gene037391:CDS
TCGGGTATGGAGCAAGGAAG+TGG 0.542447 1.3:+78272022 MS.gene037391:CDS
ACCGGCGATTCGCCGCACAA+CGG 0.545210 1.3:-78271957 None:intergenic
ACAAACCTACCCAAAACATC+AGG 0.549290 1.3:+78272781 MS.gene037391:CDS
TAGGAAACATCCAGCAAGAA+GGG 0.550149 1.3:+78272989 MS.gene037391:CDS
GAAACCCACGAAGCACCCAC+AGG 0.551071 1.3:-78272550 None:intergenic
GGTCGGATTGGTGATAACAT+TGG 0.551981 1.3:-78272147 None:intergenic
CTTAATTCCAGTGGATAGTG+TGG 0.552435 1.3:+78272918 MS.gene037391:CDS
TGAGGTTAGAATGGAAGTTG+AGG 0.556050 1.3:-78271654 None:intergenic
GTGGTTTCGGGTATGGAGCA+AGG 0.556095 1.3:+78272016 MS.gene037391:CDS
TCTTATGCTGGTGTGTCTTG+CGG 0.561796 1.3:+78272196 MS.gene037391:CDS
TTAAGAAGTTCCTAGCTGGA+AGG 0.562288 1.3:-78272900 None:intergenic
TTCCCTGATTCATAACCCAC+GGG 0.562661 1.3:+78272570 MS.gene037391:CDS
CTCCCAATGTAACAGTCTCA+AGG 0.565490 1.3:-78272321 None:intergenic
ATGGAAAGTCCTGAAGAAGA+AGG 0.565827 1.3:-78272964 None:intergenic
CTATATTGACCCTTCCAGCT+AGG 0.565963 1.3:+78272890 MS.gene037391:CDS
AATGGAGAGAGATTCTAAAA+GGG 0.567636 1.3:+78271928 MS.gene037391:CDS
CACCCGTTTCAATGCACGAA+TGG 0.568200 1.3:+78271910 MS.gene037391:CDS
ATTGGGTACATGGTTGACAC+TGG 0.572469 1.3:-78272129 None:intergenic
GAGAATGCAGGGTGTCATGA+AGG 0.574020 1.3:+78272241 MS.gene037391:CDS
ATAGGAAACATCCAGCAAGA+AGG 0.574037 1.3:+78272988 MS.gene037391:CDS
AGCCCGTGGGTTATGAATCA+GGG 0.574204 1.3:-78272572 None:intergenic
GTCGGGGCACTGAATCATCT+GGG 0.576511 1.3:+78272500 MS.gene037391:CDS
TTAATTCCAGTGGATAGTGT+GGG 0.577939 1.3:+78272919 MS.gene037391:CDS
AAAGTTCCCACACTATCCAC+TGG 0.580370 1.3:-78272925 None:intergenic
ATTCTCCACACGGCTACATA+CGG 0.584742 1.3:-78272224 None:intergenic
AATGCATTGTAAGCCGGCGT+AGG 0.585492 1.3:-78272733 None:intergenic
AGAAGGGATTGAAATTTCAG+TGG 0.588453 1.3:+78273005 MS.gene037391:CDS
TGATTTAAACGGGTTTGTGA+CGG 0.594090 1.3:+78272828 MS.gene037391:CDS
TGGACGAGAATCGGTGCCTG+TGG 0.598034 1.3:+78272534 MS.gene037391:CDS
AAAGGGTCACCGCCGTTGTG+CGG 0.600828 1.3:+78271945 MS.gene037391:CDS
GAAACGGGTGAGATGATCAC+CGG 0.600997 1.3:-78271897 None:intergenic
GGCGATTCGCCGCACAACGG+CGG 0.601835 1.3:-78271954 None:intergenic
GAAACGTGGCTATCGGGTGT+GGG 0.602041 1.3:+78272356 MS.gene037391:CDS
GTATGTTTGTTGGAGCAGCT+GGG 0.602077 1.3:+78272392 MS.gene037391:CDS
TCCCAATGTAACAGTCTCAA+GGG 0.603717 1.3:-78272320 None:intergenic
TGTTTCATACCCGACGCTAC+CGG 0.608322 1.3:-78271975 None:intergenic
TAATTGGCCTACAAAAGACA+TGG 0.608647 1.3:-78272437 None:intergenic
TAGGAACTTCTTAATTCCAG+TGG 0.615344 1.3:+78272909 MS.gene037391:CDS
ATGTTATCACCAATCCGACC+CGG 0.616285 1.3:+78272150 MS.gene037391:CDS
CCCCATAAGAAACCTCATAA+CGG 0.617736 1.3:-78272270 None:intergenic
GTTGGAAATGAGGGTATGAA+AGG 0.621669 1.3:-78271691 None:intergenic
TGAAACAGAGGAGTTCGGGT+CGG 0.622350 1.3:+78271991 MS.gene037391:CDS
TAAGAAGTTCCTAGCTGGAA+GGG 0.625100 1.3:-78272899 None:intergenic
AGAATGCAGGGTGTCATGAA+GGG 0.627661 1.3:+78272242 MS.gene037391:CDS
CTGCTCCAACAAACATACCC+TGG 0.630612 1.3:-78272387 None:intergenic
AGTTATTGTTTAGTGAGTCG+GGG 0.632837 1.3:+78272484 MS.gene037391:CDS
GACACCCTGCATTCTCCACA+CGG 0.638693 1.3:-78272234 None:intergenic
ACACCGGCACTGCCGTGACG+AGG 0.644153 1.3:+78272707 MS.gene037391:CDS
GGACGAGAATCGGTGCCTGT+GGG 0.648473 1.3:+78272535 MS.gene037391:CDS
AAGAAACAAAACCAATACCA+TGG 0.658520 1.3:-78271609 None:intergenic
CGGCGTAGGTAACCTCGTCA+CGG 0.668982 1.3:-78272719 None:intergenic
CAATTAGGTGGTCAGACTGG+CGG 0.669034 1.3:+78272454 MS.gene037391:CDS
AGGAACTGTGATCCGAAACG+TGG 0.669373 1.3:+78272342 MS.gene037391:CDS
AAGGTTATGTGAAGGTGATG+AGG 0.669820 1.3:-78271672 None:intergenic
GGGTGTGGGCATAGGAACCA+GGG 0.673291 1.3:+78272370 MS.gene037391:CDS
CTCCACACGGCTACATACGG+TGG 0.673617 1.3:-78272221 None:intergenic
TAGCGTCGGGTATGAAACAG+AGG 0.673926 1.3:+78271979 MS.gene037391:CDS
ATGCAGGGTGTCATGAAGGG+AGG 0.676996 1.3:+78272245 MS.gene037391:CDS
TTCCACCGTATGTAGCCGTG+TGG 0.688346 1.3:+78272219 MS.gene037391:CDS
AATTGGCCTACAAAAGACAT+GGG 0.692119 1.3:-78272436 None:intergenic
GGGTATGAAAGGTTATGTGA+AGG 0.694691 1.3:-78271680 None:intergenic
GTAGCCGTGTGGAGAATGCA+GGG 0.695428 1.3:+78272230 MS.gene037391:CDS
CGTGACGAGGTTACCTACGC+CGG 0.710425 1.3:+78272720 MS.gene037391:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AACCATATCATTTTATTTCT+CGG + chr1.3:78272861-78272880 MS.gene037391:CDS 20.0%
! ACACATGTTATGATTTAAAC+GGG + chr1.3:78272818-78272837 MS.gene037391:CDS 25.0%
! ATCATAACATGTGTCAAAAA+TGG - chr1.3:78272812-78272831 None:intergenic 25.0%
! GACACATGTTATGATTTAAA+CGG + chr1.3:78272817-78272836 MS.gene037391:CDS 25.0%
! GAGAAATAAAATGATATGGT+TGG - chr1.3:78272862-78272881 None:intergenic 25.0%
! TTAGTTATTGTTTAGTGAGT+CGG + chr1.3:78272482-78272501 MS.gene037391:CDS 25.0%
!! TTTTTATTATATCGGGCTTT+CGG + chr1.3:78272600-78272619 MS.gene037391:CDS 25.0%
!!! ACCATATCATTTTATTTCTC+GGG + chr1.3:78272862-78272881 MS.gene037391:CDS 25.0%
!!! GTTTTTCGGTTAAATGAATT+GGG + chr1.3:78272664-78272683 MS.gene037391:CDS 25.0%
!!! TGTTTTTCGGTTAAATGAAT+TGG + chr1.3:78272663-78272682 MS.gene037391:CDS 25.0%
ACCCGAGAAATAAAATGATA+TGG - chr1.3:78272866-78272885 None:intergenic 30.0%
AGCCCGATATAATAAAAACT+CGG - chr1.3:78272598-78272617 None:intergenic 30.0%
ATTTCTGCCTTTAACATTTC+CGG + chr1.3:78271878-78271897 MS.gene037391:CDS 30.0%
TAGTTATTGTTTAGTGAGTC+GGG + chr1.3:78272483-78272502 MS.gene037391:CDS 30.0%
TATTTCGTAAGAATAGGAGT+TGG + chr1.3:78272049-78272068 MS.gene037391:CDS 30.0%
! AATGGAGAGAGATTCTAAAA+GGG + chr1.3:78271928-78271947 MS.gene037391:CDS 30.0%
! CTATATCGGAAGATGTTTTT+CGG + chr1.3:78272650-78272669 MS.gene037391:CDS 30.0%
! CTCCGAGTTTTTATTATATC+GGG + chr1.3:78272593-78272612 MS.gene037391:CDS 30.0%
! GCTCCGAGTTTTTATTATAT+CGG + chr1.3:78272592-78272611 MS.gene037391:CDS 30.0%
! TGAGTCTGATTTTTCATTCA+TGG - chr1.3:78271816-78271835 None:intergenic 30.0%
! TTTTATTATATCGGGCTTTC+GGG + chr1.3:78272601-78272620 MS.gene037391:CDS 30.0%
!! ATATCATTTTATTTCTCGGG+TGG + chr1.3:78272865-78272884 MS.gene037391:CDS 30.0%
!! TATCATTTTATTTCTCGGGT+GGG + chr1.3:78272866-78272885 MS.gene037391:CDS 30.0%
!!! ATAACCACGTATTGGTTTTT+TGG - chr1.3:78272082-78272101 None:intergenic 30.0%
AAATTTCAATCCCTTCTTGC+TGG - chr1.3:78273002-78273021 None:intergenic 35.0%
AGAAGGGATTGAAATTTCAG+TGG + chr1.3:78273005-78273024 MS.gene037391:CDS 35.0%
AGTTATTGTTTAGTGAGTCG+GGG + chr1.3:78272484-78272503 MS.gene037391:CDS 35.0%
ATGATCACCGGAAATGTTAA+AGG - chr1.3:78271888-78271907 None:intergenic 35.0%
CGAAAAACATCTTCCGATAT+AGG - chr1.3:78272652-78272671 None:intergenic 35.0%
GAAAAATCAGACTCAGTATC+AGG + chr1.3:78271821-78271840 MS.gene037391:CDS 35.0%
GAATGGAGAGAGATTCTAAA+AGG + chr1.3:78271927-78271946 MS.gene037391:CDS 35.0%
GGTTGTTTGGTTGTATGAAA+AGG - chr1.3:78271764-78271783 None:intergenic 35.0%
TAGGAACTTCTTAATTCCAG+TGG + chr1.3:78272909-78272928 MS.gene037391:CDS 35.0%
TTAATTCCAGTGGATAGTGT+GGG + chr1.3:78272919-78272938 MS.gene037391:CDS 35.0%
! AATGGATACTCCTGATGTTT+TGG - chr1.3:78272794-78272813 None:intergenic 35.0%
! AATTGGCCTACAAAAGACAT+GGG - chr1.3:78272439-78272458 None:intergenic 35.0%
! ATGGATACTCCTGATGTTTT+GGG - chr1.3:78272793-78272812 None:intergenic 35.0%
! ATGTCTTTTGTAGGCCAATT+AGG + chr1.3:78272439-78272458 MS.gene037391:CDS 35.0%
! CCAATACGTGGTTATTGATT+CGG + chr1.3:78272087-78272106 MS.gene037391:CDS 35.0%
! GTTGGATTTTCGGTTTTCTT+GGG - chr1.3:78271786-78271805 None:intergenic 35.0%
! TAATTGGCCTACAAAAGACA+TGG - chr1.3:78272440-78272459 None:intergenic 35.0%
! TGATTTAAACGGGTTTGTGA+CGG + chr1.3:78272828-78272847 MS.gene037391:CDS 35.0%
! TGTTGGATTTTCGGTTTTCT+TGG - chr1.3:78271787-78271806 None:intergenic 35.0%
! TTGGATTTTCGGTTTTCTTG+GGG - chr1.3:78271785-78271804 None:intergenic 35.0%
!! CAATACGTGGTTATTGATTC+GGG + chr1.3:78272088-78272107 MS.gene037391:CDS 35.0%
!! GGAGAGTATTTCGTAAGAAT+AGG + chr1.3:78272043-78272062 MS.gene037391:CDS 35.0%
AAGGTTATGTGAAGGTGATG+AGG - chr1.3:78271675-78271694 None:intergenic 40.0%
ACAAACCTACCCAAAACATC+AGG + chr1.3:78272781-78272800 MS.gene037391:CDS 40.0%
ATAGGAAACATCCAGCAAGA+AGG + chr1.3:78272988-78273007 MS.gene037391:CDS 40.0%
ATGAGGTTTCTTATGGGGAT+GGG + chr1.3:78272275-78272294 MS.gene037391:CDS 40.0%
ATGGAAAGTCCTGAAGAAGA+AGG - chr1.3:78272967-78272986 None:intergenic 40.0%
ATTCGGGCAGTGACATTATT+TGG + chr1.3:78272104-78272123 MS.gene037391:CDS 40.0%
ATTTCAGTGGATGGAGCTAA+TGG + chr1.3:78273018-78273037 MS.gene037391:CDS 40.0%
CCCCATAAGAAACCTCATAA+CGG - chr1.3:78272273-78272292 None:intergenic 40.0%
CCGAATCAATAACCACGTAT+TGG - chr1.3:78272090-78272109 None:intergenic 40.0%
CCGTTATGAGGTTTCTTATG+GGG + chr1.3:78272270-78272289 MS.gene037391:CDS 40.0%
CGGTTAAATGAATTGGGTGA+GGG + chr1.3:78272670-78272689 MS.gene037391:CDS 40.0%
CTTAATTCCAGTGGATAGTG+TGG + chr1.3:78272918-78272937 MS.gene037391:CDS 40.0%
GAGGTAGTGAGAAAGAGAAA+TGG - chr1.3:78271638-78271657 None:intergenic 40.0%
GCCGTTATGAGGTTTCTTAT+GGG + chr1.3:78272269-78272288 MS.gene037391:CDS 40.0%
GCTAGAATTTGGACGAGAAT+CGG + chr1.3:78272525-78272544 MS.gene037391:CDS 40.0%
GGAATTAAGAAGTTCCTAGC+TGG - chr1.3:78272907-78272926 None:intergenic 40.0%
GGGATTGAAATTTCAGTGGA+TGG + chr1.3:78273009-78273028 MS.gene037391:CDS 40.0%
GGGTATGAAAGGTTATGTGA+AGG - chr1.3:78271683-78271702 None:intergenic 40.0%
TAAATGAATTGGGTGAGGGA+GGG + chr1.3:78272674-78272693 MS.gene037391:CDS 40.0%
TAAGAAGTTCCTAGCTGGAA+GGG - chr1.3:78272902-78272921 None:intergenic 40.0%
TAGGAAACATCCAGCAAGAA+GGG + chr1.3:78272989-78273008 MS.gene037391:CDS 40.0%
TATGAGGTTTCTTATGGGGA+TGG + chr1.3:78272274-78272293 MS.gene037391:CDS 40.0%
TCCACCAAAAAACCAATACG+TGG + chr1.3:78272075-78272094 MS.gene037391:CDS 40.0%
TCCCAATGTAACAGTCTCAA+GGG - chr1.3:78272323-78272342 None:intergenic 40.0%
TCGGTTAAATGAATTGGGTG+AGG + chr1.3:78272669-78272688 MS.gene037391:CDS 40.0%
TCTCCATTCGTGCATTGAAA+CGG - chr1.3:78271916-78271935 None:intergenic 40.0%
TCTTCAGGACTTTCCATCAT+AGG + chr1.3:78272970-78272989 MS.gene037391:CDS 40.0%
TGAAGGTGATGAGGTTAGAA+TGG - chr1.3:78271666-78271685 None:intergenic 40.0%
TGAGGTTAGAATGGAAGTTG+AGG - chr1.3:78271657-78271676 None:intergenic 40.0%
TGCCGTTATGAGGTTTCTTA+TGG + chr1.3:78272268-78272287 MS.gene037391:CDS 40.0%
TGGTGATAACATTGGGTACA+TGG - chr1.3:78272142-78272161 None:intergenic 40.0%
TTAAATGAATTGGGTGAGGG+AGG + chr1.3:78272673-78272692 MS.gene037391:CDS 40.0%
TTAAGAAGTTCCTAGCTGGA+AGG - chr1.3:78272903-78272922 None:intergenic 40.0%
TTCATTCATGGACTCAGTGT+TGG - chr1.3:78271804-78271823 None:intergenic 40.0%
TTCGGGCAGTGACATTATTT+GGG + chr1.3:78272105-78272124 MS.gene037391:CDS 40.0%
TTGCTGGATGTTTCCTATGA+TGG - chr1.3:78272986-78273005 None:intergenic 40.0%
TTTCAGTGGATGGAGCTAAT+GGG + chr1.3:78273019-78273038 MS.gene037391:CDS 40.0%
TTTCCCTGATTCATAACCCA+CGG + chr1.3:78272569-78272588 MS.gene037391:CDS 40.0%
TTTGTTTCACGTTGATGCGT+TGG - chr1.3:78271712-78271731 None:intergenic 40.0%
! GATGGAGCTAATGGGTATAT+GGG + chr1.3:78273027-78273046 MS.gene037391:CDS 40.0%
! GCTAATGGGTATATGGGATT+TGG + chr1.3:78273033-78273052 MS.gene037391:CDS 40.0%
! GTTGGAAATGAGGGTATGAA+AGG - chr1.3:78271694-78271713 None:intergenic 40.0%
! TCTTTTGTAGGCCAATTAGG+TGG + chr1.3:78272442-78272461 MS.gene037391:CDS 40.0%
!! ATACTCCTGATGTTTTGGGT+AGG - chr1.3:78272789-78272808 None:intergenic 40.0%
!! GTCGGATTGGTGATAACATT+GGG - chr1.3:78272149-78272168 None:intergenic 40.0%
!! TGGACTCAGTGTTGGATTTT+CGG - chr1.3:78271796-78271815 None:intergenic 40.0%
!!! ACCACGTATTGGTTTTTTGG+TGG - chr1.3:78272079-78272098 None:intergenic 40.0%
AAAGTTCCCACACTATCCAC+TGG - chr1.3:78272928-78272947 None:intergenic 45.0%
AAATGAATTGGGTGAGGGAG+GGG + chr1.3:78272675-78272694 MS.gene037391:CDS 45.0%
AATAAAAACTCGGAGCCCGT+GGG - chr1.3:78272588-78272607 None:intergenic 45.0%
ACGTTGATGCGTTGGAAATG+AGG - chr1.3:78271704-78271723 None:intergenic 45.0%
AGGAACCAGGGTATGTTTGT+TGG + chr1.3:78272382-78272401 MS.gene037391:CDS 45.0%
ATGTTATCACCAATCCGACC+CGG + chr1.3:78272150-78272169 MS.gene037391:CDS 45.0%
ATTCTCCACACGGCTACATA+CGG - chr1.3:78272227-78272246 None:intergenic 45.0%
ATTGGGTACATGGTTGACAC+TGG - chr1.3:78272132-78272151 None:intergenic 45.0%
CATAAGATGAAGAATCCCCC+GGG - chr1.3:78272183-78272202 None:intergenic 45.0%
CGTTGATGCGTTGGAAATGA+GGG - chr1.3:78271703-78271722 None:intergenic 45.0%
CTAGCTGGAAGGGTCAATAT+AGG - chr1.3:78272892-78272911 None:intergenic 45.0%
CTATATTGACCCTTCCAGCT+AGG + chr1.3:78272890-78272909 MS.gene037391:CDS 45.0%
CTCCATTCGTGCATTGAAAC+GGG - chr1.3:78271915-78271934 None:intergenic 45.0%
CTCCCAATGTAACAGTCTCA+AGG - chr1.3:78272324-78272343 None:intergenic 45.0%
CTTGAGACTGTTACATTGGG+AGG + chr1.3:78272322-78272341 MS.gene037391:CDS 45.0%
GCATAAGATGAAGAATCCCC+CGG - chr1.3:78272184-78272203 None:intergenic 45.0%
GCATTTGCTCCTTCTTCTTC+AGG + chr1.3:78272955-78272974 MS.gene037391:CDS 45.0%
GCCCTTGAGACTGTTACATT+GGG + chr1.3:78272319-78272338 MS.gene037391:CDS 45.0%
GGCAAGTGTCCCTTTAGTAT+AGG - chr1.3:78272302-78272321 None:intergenic 45.0%
GGGATGGGTCCTATACTAAA+GGG + chr1.3:78272290-78272309 MS.gene037391:CDS 45.0%
GGGGATTCTTCATCTTATGC+TGG + chr1.3:78272184-78272203 MS.gene037391:CDS 45.0%
GGGTATGAAACAGAGGAGTT+CGG + chr1.3:78271986-78272005 MS.gene037391:CDS 45.0%
GGTATGAAACAGAGGAGTTC+GGG + chr1.3:78271987-78272006 MS.gene037391:CDS 45.0%
TAATAAAAACTCGGAGCCCG+TGG - chr1.3:78272589-78272608 None:intergenic 45.0%
TCATCTGGGTCGCTAGAATT+TGG + chr1.3:78272514-78272533 MS.gene037391:CDS 45.0%
TCCCGAAATGCATTGTAAGC+CGG - chr1.3:78272742-78272761 None:intergenic 45.0%
TCTTATGCTGGTGTGTCTTG+CGG + chr1.3:78272196-78272215 MS.gene037391:CDS 45.0%
TGCCCTTGAGACTGTTACAT+TGG + chr1.3:78272318-78272337 MS.gene037391:CDS 45.0%
TTCCCTGATTCATAACCCAC+GGG + chr1.3:78272570-78272589 MS.gene037391:CDS 45.0%
! AGAATGCAGGGTGTCATGAA+GGG + chr1.3:78272242-78272261 MS.gene037391:CDS 45.0%
! GGATGGAGCTAATGGGTATA+TGG + chr1.3:78273026-78273045 MS.gene037391:CDS 45.0%
! GTATGTTTGTTGGAGCAGCT+GGG + chr1.3:78272392-78272411 MS.gene037391:CDS 45.0%
! TAAACGGGTTTGTGACGGTT+CGG + chr1.3:78272833-78272852 MS.gene037391:CDS 45.0%
! TCGGTTTTCTTGGGGTTGTT+TGG - chr1.3:78271777-78271796 None:intergenic 45.0%
!! GGTCGGATTGGTGATAACAT+TGG - chr1.3:78272150-78272169 None:intergenic 45.0%
AATCCCCCGGGTTAAAAACC+GGG - chr1.3:78272171-78272190 None:intergenic 50.0%
AATGCATTGTAAGCCGGCGT+AGG - chr1.3:78272736-78272755 None:intergenic 50.0%
AGGAACTGTGATCCGAAACG+TGG + chr1.3:78272342-78272361 MS.gene037391:CDS 50.0%
CAATTAGGTGGTCAGACTGG+CGG + chr1.3:78272454-78272473 MS.gene037391:CDS 50.0%
CACCCGTTTCAATGCACGAA+TGG + chr1.3:78271910-78271929 MS.gene037391:CDS 50.0%
CTGCTCCAACAAACATACCC+TGG - chr1.3:78272390-78272409 None:intergenic 50.0%
GAAACGGGTGAGATGATCAC+CGG - chr1.3:78271900-78271919 None:intergenic 50.0%
GAATCCCCCGGGTTAAAAAC+CGG - chr1.3:78272172-78272191 None:intergenic 50.0%
GGGGATGGGTCCTATACTAA+AGG + chr1.3:78272289-78272308 MS.gene037391:CDS 50.0%
GGGGTTGAGGGTTCCTATAT+CGG + chr1.3:78272636-78272655 MS.gene037391:CDS 50.0%
GGTTAAAAACCGGGTCGGAT+TGG - chr1.3:78272162-78272181 None:intergenic 50.0%
GGTTGTTGGGTCTTGGAAGT+GGG + chr1.3:78272413-78272432 MS.gene037391:CDS 50.0%
GTGATCCGAAACGTGGCTAT+CGG + chr1.3:78272349-78272368 MS.gene037391:CDS 50.0%
TGAAACAGAGGAGTTCGGGT+CGG + chr1.3:78271991-78272010 MS.gene037391:CDS 50.0%
TGATCCGAAACGTGGCTATC+GGG + chr1.3:78272350-78272369 MS.gene037391:CDS 50.0%
TGTTTCATACCCGACGCTAC+CGG - chr1.3:78271978-78271997 None:intergenic 50.0%
! AAACGGGTTTGTGACGGTTC+GGG + chr1.3:78272834-78272853 MS.gene037391:CDS 50.0%
! AGCCCGTGGGTTATGAATCA+GGG - chr1.3:78272575-78272594 None:intergenic 50.0%
! AGTGGGCCCATGTCTTTTGT+AGG + chr1.3:78272430-78272449 MS.gene037391:CDS 50.0%
! ATCCGACCCGGTTTTTAACC+CGG + chr1.3:78272162-78272181 MS.gene037391:CDS 50.0%
! GAGAATGCAGGGTGTCATGA+AGG + chr1.3:78272241-78272260 MS.gene037391:CDS 50.0%
! GCCGGCTTACAATGCATTTC+GGG + chr1.3:78272738-78272757 MS.gene037391:CDS 50.0%
! GGTATGTTTGTTGGAGCAGC+TGG + chr1.3:78272391-78272410 MS.gene037391:CDS 50.0%
! TAGCGTCGGGTATGAAACAG+AGG + chr1.3:78271979-78271998 MS.gene037391:CDS 50.0%
! TATATCGGGCTTTCGGGTCT+TGG + chr1.3:78272607-78272626 MS.gene037391:CDS 50.0%
!! CGCCGGCTTACAATGCATTT+CGG + chr1.3:78272737-78272756 MS.gene037391:CDS 50.0%
CACACCCGATAGCCACGTTT+CGG - chr1.3:78272357-78272376 None:intergenic 55.0%
CGCCAGTCTGACCACCTAAT+TGG - chr1.3:78272456-78272475 None:intergenic 55.0%
GAAACAGAGGAGTTCGGGTC+GGG + chr1.3:78271992-78272011 MS.gene037391:CDS 55.0%
GAAACGTGGCTATCGGGTGT+GGG + chr1.3:78272356-78272375 MS.gene037391:CDS 55.0%
GACACCCTGCATTCTCCACA+CGG - chr1.3:78272237-78272256 None:intergenic 55.0%
GGCCAATTAGGTGGTCAGAC+TGG + chr1.3:78272451-78272470 MS.gene037391:CDS 55.0%
GGGTTGTTGGGTCTTGGAAG+TGG + chr1.3:78272412-78272431 MS.gene037391:CDS 55.0%
GTAGCCGTGTGGAGAATGCA+GGG + chr1.3:78272230-78272249 MS.gene037391:CDS 55.0%
GTTGGAGCAGCTGGGTTGTT+GGG + chr1.3:78272400-78272419 MS.gene037391:CDS 55.0%
TCGGGTATGGAGCAAGGAAG+TGG + chr1.3:78272022-78272041 MS.gene037391:CDS 55.0%
TCTTGGAGTTGGGGGGTTGA+GGG + chr1.3:78272624-78272643 MS.gene037391:CDS 55.0%
TGTAGCCGTGTGGAGAATGC+AGG + chr1.3:78272229-78272248 MS.gene037391:CDS 55.0%
TGTTGGAGCAGCTGGGTTGT+TGG + chr1.3:78272399-78272418 MS.gene037391:CDS 55.0%
TTCCACCGTATGTAGCCGTG+TGG + chr1.3:78272219-78272238 MS.gene037391:CDS 55.0%
! ATGCAGGGTGTCATGAAGGG+AGG + chr1.3:78272245-78272264 MS.gene037391:CDS 55.0%
! CTTTCGGGTCTTGGAGTTGG+GGG + chr1.3:78272616-78272635 MS.gene037391:CDS 55.0%
! GAGCCCGTGGGTTATGAATC+AGG - chr1.3:78272576-78272595 None:intergenic 55.0%
! GCTTTCGGGTCTTGGAGTTG+GGG + chr1.3:78272615-78272634 MS.gene037391:CDS 55.0%
! GGCTTTCGGGTCTTGGAGTT+GGG + chr1.3:78272614-78272633 MS.gene037391:CDS 55.0%
! GTGGTTTCGGGTATGGAGCA+AGG + chr1.3:78272016-78272035 MS.gene037391:CDS 55.0%
! TCCGACCCGGTTTTTAACCC+GGG + chr1.3:78272163-78272182 MS.gene037391:CDS 55.0%
! TTTCGGGTCTTGGAGTTGGG+GGG + chr1.3:78272617-78272636 MS.gene037391:CDS 55.0%
!! AGTCGGGGCACTGAATCATC+TGG + chr1.3:78272499-78272518 MS.gene037391:CDS 55.0%
!! GTCGGGGCACTGAATCATCT+GGG + chr1.3:78272500-78272519 MS.gene037391:CDS 55.0%
!! TGAAGGGAGGTGCCGTTATG+AGG + chr1.3:78272258-78272277 MS.gene037391:CDS 55.0%
AAAGGGTCACCGCCGTTGTG+CGG + chr1.3:78271945-78271964 MS.gene037391:CDS 60.0%
CCCCGGGTTAAAAACCGGGT+CGG - chr1.3:78272167-78272186 None:intergenic 60.0%
CGAAACGTGGCTATCGGGTG+TGG + chr1.3:78272355-78272374 MS.gene037391:CDS 60.0%
CGGCGTAGGTAACCTCGTCA+CGG - chr1.3:78272722-78272741 None:intergenic 60.0%
CGTGACGAGGTTACCTACGC+CGG + chr1.3:78272720-78272739 MS.gene037391:CDS 60.0%
CTCCACACGGCTACATACGG+TGG - chr1.3:78272224-78272243 None:intergenic 60.0%
GCAGCTGGGTTGTTGGGTCT+TGG + chr1.3:78272406-78272425 MS.gene037391:CDS 60.0%
GGGTGTGGGCATAGGAACCA+GGG + chr1.3:78272370-78272389 MS.gene037391:CDS 60.0%
GTCTTGGAGTTGGGGGGTTG+AGG + chr1.3:78272623-78272642 MS.gene037391:CDS 60.0%
GTTCGGGTCGGGTGTGGTTT+CGG + chr1.3:78272003-78272022 MS.gene037391:CDS 60.0%
TAACCTCGTCACGGCAGTGC+CGG - chr1.3:78272713-78272732 None:intergenic 60.0%
TGAATTGGGTGAGGGAGGGG+TGG + chr1.3:78272678-78272697 MS.gene037391:CDS 60.0%
TGGCTATCGGGTGTGGGCAT+AGG + chr1.3:78272362-78272381 MS.gene037391:CDS 60.0%
TTCGGGTCGGGTGTGGTTTC+GGG + chr1.3:78272004-78272023 MS.gene037391:CDS 60.0%
! CCGACCCGGTTTTTAACCCG+GGG + chr1.3:78272164-78272183 MS.gene037391:CDS 60.0%
! CGACCCGGTTTTTAACCCGG+GGG + chr1.3:78272165-78272184 MS.gene037391:CDS 60.0%
! GAAACCCACGAAGCACCCAC+AGG - chr1.3:78272553-78272572 None:intergenic 60.0%
! GGACGAGAATCGGTGCCTGT+GGG + chr1.3:78272535-78272554 MS.gene037391:CDS 60.0%
! GGGCTTTCGGGTCTTGGAGT+TGG + chr1.3:78272613-78272632 MS.gene037391:CDS 60.0%
! GTCGGGTGTGGTTTCGGGTA+TGG + chr1.3:78272009-78272028 MS.gene037391:CDS 60.0%
! TGGACGAGAATCGGTGCCTG+TGG + chr1.3:78272534-78272553 MS.gene037391:CDS 60.0%
ACCGGCGATTCGCCGCACAA+CGG - chr1.3:78271960-78271979 None:intergenic 65.0%
AGAGGAGTTCGGGTCGGGTG+TGG + chr1.3:78271997-78272016 MS.gene037391:CDS 65.0%
CGGGTGTGGGCATAGGAACC+AGG + chr1.3:78272369-78272388 MS.gene037391:CDS 65.0%
GGAGGGGTGGTCATGGACAC+CGG + chr1.3:78272691-78272710 MS.gene037391:CDS 65.0%
GGTGCCTGTGGGTGCTTCGT+GGG + chr1.3:78272546-78272565 MS.gene037391:CDS 65.0%
ACACCGGCACTGCCGTGACG+AGG + chr1.3:78272707-78272726 MS.gene037391:CDS 70.0%
CGGCGAATCGCCGGTAGCGT+CGG + chr1.3:78271965-78271984 MS.gene037391:CDS 70.0%
CGGTGCCTGTGGGTGCTTCG+TGG + chr1.3:78272545-78272564 MS.gene037391:CDS 70.0%
GCCGTTGTGCGGCGAATCGC+CGG + chr1.3:78271956-78271975 MS.gene037391:CDS 70.0%
GGCGAATCGCCGGTAGCGTC+GGG + chr1.3:78271966-78271985 MS.gene037391:CDS 70.0%
GGCGATTCGCCGCACAACGG+CGG - chr1.3:78271957-78271976 None:intergenic 70.0%
GGGTGAGGGAGGGGTGGTCA+TGG + chr1.3:78272684-78272703 MS.gene037391:CDS 70.0%


Chromosome Type Strat End Strand Name
chr1.3 gene 78271611 78273071 78271611 ID=MS.gene037391
chr1.3 mRNA 78271611 78273071 78271611 ID=MS.gene037391.t1;Parent=MS.gene037391
chr1.3 exon 78271611 78273071 78271611 ID=MS.gene037391.t1.exon1;Parent=MS.gene037391.t1
chr1.3 CDS 78271611 78273071 78271611 ID=cds.MS.gene037391.t1;Parent=MS.gene037391.t1
Gene Sequence

>MS.gene037391

ATGGTATTGGTTTTGTTTCTTCTACCATTTCTCTTTCTCACTACCTCAACTTCCATTCTAACCTCATCACCTTCACATAACCTTTCATACCCTCATTTCCAACGCATCAACGTGAAACAAACTATTGCAGAAACAAAGCTAAATTTGAAGCCTTTTCATACAACCAAACAACCCCAAGAAAACCGAAAATCCAACACTGAGTCCATGAATGAAAAATCAGACTCAGTATCAGGAAAACACAAACTGAAGCTACTTCACAGAGATAAAATTTCTGCCTTTAACATTTCCGGTGATCATCTCACCCGTTTCAATGCACGAATGGAGAGAGATTCTAAAAGGGTCACCGCCGTTGTGCGGCGAATCGCCGGTAGCGTCGGGTATGAAACAGAGGAGTTCGGGTCGGGTGTGGTTTCGGGTATGGAGCAAGGAAGTGGAGAGTATTTCGTAAGAATAGGAGTTGGAAGTCCACCAAAAAACCAATACGTGGTTATTGATTCGGGCAGTGACATTATTTGGGTCCAGTGTCAACCATGTACCCAATGTTATCACCAATCCGACCCGGTTTTTAACCCGGGGGATTCTTCATCTTATGCTGGTGTGTCTTGCGGTTCCACCGTATGTAGCCGTGTGGAGAATGCAGGGTGTCATGAAGGGAGGTGCCGTTATGAGGTTTCTTATGGGGATGGGTCCTATACTAAAGGGACACTTGCCCTTGAGACTGTTACATTGGGAGGAACTGTGATCCGAAACGTGGCTATCGGGTGTGGGCATAGGAACCAGGGTATGTTTGTTGGAGCAGCTGGGTTGTTGGGTCTTGGAAGTGGGCCCATGTCTTTTGTAGGCCAATTAGGTGGTCAGACTGGCGGTACATTTAGTTATTGTTTAGTGAGTCGGGGCACTGAATCATCTGGGTCGCTAGAATTTGGACGAGAATCGGTGCCTGTGGGTGCTTCGTGGGTTTCCCTGATTCATAACCCACGGGCTCCGAGTTTTTATTATATCGGGCTTTCGGGTCTTGGAGTTGGGGGGTTGAGGGTTCCTATATCGGAAGATGTTTTTCGGTTAAATGAATTGGGTGAGGGAGGGGTGGTCATGGACACCGGCACTGCCGTGACGAGGTTACCTACGCCGGCTTACAATGCATTTCGGGATGCATTTATTGCTCAAACGACAAACCTACCCAAAACATCAGGAGTATCCATTTTTGACACATGTTATGATTTAAACGGGTTTGTGACGGTTCGGGTTCCAACCATATCATTTTATTTCTCGGGTGGGCCTATATTGACCCTTCCAGCTAGGAACTTCTTAATTCCAGTGGATAGTGTGGGAACTTTTTGCTTTGCATTTGCTCCTTCTTCTTCAGGACTTTCCATCATAGGAAACATCCAGCAAGAAGGGATTGAAATTTCAGTGGATGGAGCTAATGGGTATATGGGATTTGGACCCAATGTATGTTAA
Protein sequence

>MS.gene037391.t1

MVLVLFLLPFLFLTTSTSILTSSPSHNLSYPHFQRINVKQTIAETKLNLKPFHTTKQPQENRKSNTESMNEKSDSVSGKHKLKLLHRDKISAFNISGDHLTRFNARMERDSKRVTAVVRRIAGSVGYETEEFGSGVVSGMEQGSGEYFVRIGVGSPPKNQYVVIDSGSDIIWVQCQPCTQCYHQSDPVFNPGDSSSYAGVSCGSTVCSRVENAGCHEGRCRYEVSYGDGSYTKGTLALETVTLGGTVIRNVAIGCGHRNQGMFVGAAGLLGLGSGPMSFVGQLGGQTGGTFSYCLVSRGTESSGSLEFGRESVPVGASWVSLIHNPRAPSFYYIGLSGLGVGGLRVPISEDVFRLNELGEGGVVMDTGTAVTRLPTPAYNAFRDAFIAQTTNLPKTSGVSIFDTCYDLNGFVTVRVPTISFYFSGGPILTLPARNFLIPVDSVGTFCFAFAPSSSGLSIIGNIQQEGIEISVDGANGYMGFGPNVC