Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene03780.t1 | RHN60559.1 | 97.6 | 694 | 17 | 0 | 1 | 694 | 1 | 694 | 0.00E+00 | 1288.1 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene03780.t1 | Q3E7D0 | 71.4 | 713 | 181 | 5 | 1 | 694 | 1 | 709 | 2.3e-266 | 919.5 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene03780.t1 | A0A396I4M7 | 97.6 | 694 | 17 | 0 | 1 | 694 | 1 | 694 | 0.0e+00 | 1288.1 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene03780 | MS.gene070688 | PPI |
| MS.gene069113 | MS.gene03780 | PPI |
| MS.gene03780 | MS.gene008938 | PPI |
| MS.gene065219 | MS.gene03780 | PPI |
| MS.gene027793 | MS.gene03780 | PPI |
| MS.gene046435 | MS.gene03780 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene03780.t1 | MTR_4g055290 | 96.974 | 694 | 15 | 1 | 1 | 694 | 1 | 688 | 0.0 | 1366 |
| MS.gene03780.t1 | MTR_2g084895 | 79.574 | 705 | 110 | 10 | 4 | 694 | 2 | 686 | 0.0 | 1068 |
| MS.gene03780.t1 | MTR_2g103510 | 64.671 | 668 | 164 | 9 | 27 | 694 | 4 | 599 | 0.0 | 799 |
| MS.gene03780.t1 | MTR_8g068550 | 59.165 | 551 | 221 | 3 | 144 | 694 | 217 | 763 | 0.0 | 696 |
| MS.gene03780.t1 | MTR_5g032020 | 49.713 | 696 | 328 | 7 | 17 | 694 | 14 | 705 | 0.0 | 655 |
| MS.gene03780.t1 | MTR_3g080390 | 37.989 | 537 | 295 | 6 | 154 | 686 | 15 | 517 | 5.17e-115 | 356 |
| MS.gene03780.t1 | MTR_8g086520 | 35.821 | 536 | 307 | 5 | 154 | 686 | 20 | 521 | 4.55e-112 | 348 |
| MS.gene03780.t1 | MTR_2g016460 | 35.634 | 536 | 308 | 6 | 154 | 686 | 20 | 521 | 1.65e-106 | 334 |
| MS.gene03780.t1 | MTR_8g063220 | 34.741 | 521 | 301 | 5 | 171 | 686 | 44 | 530 | 4.22e-103 | 325 |
| MS.gene03780.t1 | MTR_8g086520 | 36.345 | 487 | 275 | 5 | 154 | 639 | 20 | 472 | 2.70e-101 | 318 |
| MS.gene03780.t1 | MTR_4g106750 | 33.973 | 521 | 305 | 5 | 171 | 686 | 43 | 529 | 2.23e-98 | 313 |
| MS.gene03780.t1 | MTR_3g078270 | 35.048 | 525 | 294 | 7 | 171 | 686 | 43 | 529 | 1.23e-97 | 311 |
| MS.gene03780.t1 | MTR_4g106750 | 33.658 | 514 | 302 | 5 | 178 | 686 | 1 | 480 | 1.89e-94 | 301 |
| MS.gene03780.t1 | MTR_5g035180 | 32.759 | 522 | 311 | 5 | 171 | 686 | 48 | 535 | 2.32e-94 | 302 |
| MS.gene03780.t1 | MTR_1g021120 | 33.952 | 539 | 315 | 8 | 148 | 681 | 37 | 539 | 1.24e-92 | 298 |
| MS.gene03780.t1 | MTR_3g103230 | 33.013 | 521 | 307 | 6 | 171 | 686 | 68 | 551 | 5.94e-92 | 296 |
| MS.gene03780.t1 | MTR_1g106085 | 33.142 | 522 | 306 | 7 | 171 | 686 | 40 | 524 | 4.03e-88 | 286 |
| MS.gene03780.t1 | MTR_8g086520 | 35.484 | 434 | 244 | 5 | 255 | 686 | 6 | 405 | 1.68e-85 | 275 |
| MS.gene03780.t1 | MTR_8g086520 | 36.842 | 399 | 233 | 3 | 154 | 551 | 20 | 400 | 4.00e-85 | 274 |
| MS.gene03780.t1 | MTR_5g022110 | 31.629 | 528 | 309 | 6 | 169 | 686 | 59 | 544 | 2.67e-82 | 271 |
| MS.gene03780.t1 | MTR_4g106750 | 31.172 | 401 | 238 | 4 | 290 | 686 | 11 | 377 | 8.58e-63 | 214 |
| MS.gene03780.t1 | MTR_8g086535 | 33.621 | 116 | 77 | 0 | 436 | 551 | 1 | 116 | 8.81e-15 | 71.6 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene03780.t1 | AT2G27810 | 72.409 | 714 | 172 | 7 | 1 | 694 | 1 | 709 | 0.0 | 964 |
| MS.gene03780.t1 | AT2G27810 | 70.054 | 738 | 172 | 8 | 1 | 694 | 1 | 733 | 0.0 | 953 |
| MS.gene03780.t1 | AT2G27810 | 70.875 | 594 | 148 | 7 | 1 | 574 | 1 | 589 | 0.0 | 758 |
| MS.gene03780.t1 | AT2G27810 | 69.470 | 547 | 142 | 7 | 1 | 527 | 1 | 542 | 0.0 | 674 |
| MS.gene03780.t1 | AT4G38050 | 48.641 | 699 | 308 | 8 | 10 | 686 | 35 | 704 | 0.0 | 630 |
| MS.gene03780.t1 | AT2G05760 | 37.803 | 537 | 296 | 7 | 154 | 686 | 15 | 517 | 1.11e-111 | 347 |
| MS.gene03780.t1 | AT2G34190 | 35.645 | 519 | 297 | 5 | 171 | 686 | 37 | 521 | 1.32e-108 | 339 |
| MS.gene03780.t1 | AT1G60030 | 37.620 | 521 | 286 | 5 | 171 | 686 | 49 | 535 | 1.77e-108 | 339 |
| MS.gene03780.t1 | AT5G62890 | 35.317 | 521 | 298 | 5 | 171 | 686 | 43 | 529 | 1.04e-101 | 322 |
| MS.gene03780.t1 | AT5G62890 | 35.317 | 521 | 298 | 5 | 171 | 686 | 43 | 529 | 1.04e-101 | 322 |
| MS.gene03780.t1 | AT5G62890 | 35.317 | 521 | 298 | 5 | 171 | 686 | 43 | 529 | 1.04e-101 | 322 |
| MS.gene03780.t1 | AT5G49990 | 35.317 | 521 | 298 | 6 | 171 | 686 | 39 | 525 | 3.40e-100 | 317 |
| MS.gene03780.t1 | AT5G49990 | 35.317 | 521 | 298 | 6 | 171 | 686 | 39 | 525 | 3.40e-100 | 317 |
| MS.gene03780.t1 | AT5G49990 | 35.317 | 521 | 298 | 6 | 171 | 686 | 39 | 525 | 3.40e-100 | 317 |
| MS.gene03780.t1 | AT5G49990 | 35.317 | 521 | 298 | 6 | 171 | 686 | 39 | 525 | 3.40e-100 | 317 |
| MS.gene03780.t1 | AT1G49960 | 36.138 | 523 | 295 | 5 | 169 | 686 | 35 | 523 | 1.73e-96 | 308 |
| MS.gene03780.t1 | AT5G62890 | 38.717 | 421 | 239 | 3 | 171 | 590 | 43 | 445 | 3.59e-95 | 303 |
| MS.gene03780.t1 | AT1G10540 | 32.576 | 528 | 306 | 8 | 171 | 686 | 47 | 536 | 5.23e-91 | 294 |
| MS.gene03780.t1 | AT2G26510 | 34.502 | 542 | 309 | 8 | 148 | 681 | 38 | 541 | 5.54e-91 | 294 |
| MS.gene03780.t1 | AT1G65550 | 31.743 | 545 | 324 | 7 | 154 | 686 | 30 | 538 | 1.36e-83 | 274 |
| MS.gene03780.t1 | AT1G10540 | 35.165 | 364 | 206 | 6 | 171 | 526 | 47 | 388 | 1.20e-67 | 228 |
| MS.gene03780.t1 | AT2G26510 | 35.938 | 384 | 219 | 5 | 148 | 526 | 38 | 399 | 6.88e-66 | 223 |
| MS.gene03780.t1 | AT2G26510 | 36.119 | 371 | 210 | 5 | 148 | 513 | 38 | 386 | 5.53e-63 | 216 |
| MS.gene03780.t1 | AT5G25420 | 29.091 | 440 | 221 | 8 | 154 | 590 | 42 | 393 | 2.61e-49 | 178 |
Find 227 sgRNAs with CRISPR-Local
Find 0 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCGACAGTGTTGTTCGTTTC+GGG | 0.136430 | 4.3:-45777206 | MS.gene03780:CDS |
| CCTGCTGTTGCTAAAGATTA+TGG | 0.172844 | 4.3:-45766646 | MS.gene03780:CDS |
| ACTCTGTTGCATATTAGTTT+TGG | 0.205061 | 4.3:-45777176 | MS.gene03780:CDS |
| TACAATTGCCGTGACTAAAA+TGG | 0.212672 | 4.3:-45773581 | MS.gene03780:CDS |
| CAGCATTACGTTTCAATGTT+AGG | 0.240444 | 4.3:-45777395 | MS.gene03780:CDS |
| CTCTGTACGACACCGTTTAA+TGG | 0.243328 | 4.3:+45778024 | None:intergenic |
| GGTCTCTGGGGAACTGGAAC+TGG | 0.256163 | 4.3:-45773631 | MS.gene03780:CDS |
| GACCGTTCCGGTTGCGGTTC+CGG | 0.257552 | 4.3:-45777986 | MS.gene03780:CDS |
| GCATATAATGAGGGAGCTTC+AGG | 0.257872 | 4.3:-45776844 | MS.gene03780:CDS |
| GTGGGCAATGCTCACAGCTT+GGG | 0.261248 | 4.3:-45767782 | MS.gene03780:CDS |
| CCAGAGTTACAAGGATTAAA+TGG | 0.261735 | 4.3:-45777083 | MS.gene03780:CDS |
| ACCGCCAACGCCACCCTTCC+TGG | 0.272033 | 4.3:-45778212 | MS.gene03780:CDS |
| CGAATCCACGGATGAGATTA+AGG | 0.274927 | 4.3:+45774986 | None:intergenic |
| GTAGTGTCTTGGCTGGTCTC+TGG | 0.274970 | 4.3:-45773645 | MS.gene03780:CDS |
| ATGATGAAGGATTTGCTTCT+AGG | 0.285363 | 4.3:-45777807 | MS.gene03780:CDS |
| AACCAATTCCACCTTCTTCC+TGG | 0.286962 | 4.3:-45778170 | MS.gene03780:CDS |
| TCCTGTCTTTCACTGGAAAA+TGG | 0.291891 | 4.3:-45775030 | MS.gene03780:CDS |
| CTTCGTAAGATATCTGTTCT+TGG | 0.293844 | 4.3:-45775401 | MS.gene03780:CDS |
| ATCGACAGTGTTGTTCGTTT+CGG | 0.298954 | 4.3:-45777207 | MS.gene03780:CDS |
| CTCTTGGTCTAGCAATTACT+TGG | 0.299128 | 4.3:-45775247 | MS.gene03780:CDS |
| CGTTTACTTGGCGCCGGCTT+TGG | 0.300570 | 4.3:-45777120 | MS.gene03780:CDS |
| ATTCCTGAAGTTATGGTTGC+TGG | 0.301277 | 4.3:-45767820 | MS.gene03780:CDS |
| AGATCGACTTGCGGCGGTTC+AGG | 0.306270 | 4.3:+45778069 | None:intergenic |
| TTGGCTGGTCTCTGGGGAAC+TGG | 0.306817 | 4.3:-45773637 | MS.gene03780:CDS |
| GGGCCTTTCCACAGCAAATA+TGG | 0.306871 | 4.3:-45767586 | MS.gene03780:CDS |
| TCCGTTCCCGTCCCCGGTGC+AGG | 0.312913 | 4.3:+45777892 | None:intergenic |
| GATGATATTGCGAGAGCTTC+CGG | 0.326458 | 4.3:+45767732 | None:intergenic |
| AAACATACCTGCATCAAATA+TGG | 0.330106 | 4.3:-45775168 | MS.gene03780:CDS |
| AGGGTGGCGTTGGCGGTTGT+TGG | 0.330214 | 4.3:+45778218 | None:intergenic |
| TCAATACATGTACCCACTAA+TGG | 0.339501 | 4.3:+45775622 | None:intergenic |
| CCTGCCTACTTTCAACAATA+TGG | 0.342558 | 4.3:-45767673 | MS.gene03780:CDS |
| GGCACAGACACGTTCGAATT+CGG | 0.345026 | 4.3:+45767643 | None:intergenic |
| TGCTTCAATTCCTGAAGTTA+TGG | 0.348628 | 4.3:-45767827 | MS.gene03780:CDS |
| CTGATATTGTTGTCTCTCAT+AGG | 0.352579 | 4.3:-45773523 | MS.gene03780:intron |
| CCATTTAATCCTTGTAACTC+TGG | 0.353896 | 4.3:+45777083 | None:intergenic |
| TTCTGTACCGCAGGTAAGAT+TGG | 0.365060 | 4.3:-45767859 | MS.gene03780:intron |
| GATGGTGTTCCGAGTACTAA+TGG | 0.366358 | 4.3:-45777925 | MS.gene03780:CDS |
| AGCAACAGCAGGCTCCCTTC+TGG | 0.367800 | 4.3:+45766657 | None:intergenic |
| GTTTACATCACACCCTTTGT+AGG | 0.369826 | 4.3:+45775187 | None:intergenic |
| TTAACAACCGGAACCGCAAC+CGG | 0.371150 | 4.3:+45777979 | None:intergenic |
| CTGCTGTTGCTAAAGATTAT+GGG | 0.371458 | 4.3:-45766645 | MS.gene03780:CDS |
| TAGTGTCTTGGCTGGTCTCT+GGG | 0.374771 | 4.3:-45773644 | MS.gene03780:CDS |
| CTTAATCTCATCCGTGGATT+CGG | 0.378682 | 4.3:-45774985 | MS.gene03780:intron |
| GAGACTAATGCTAGTAATTC+CGG | 0.381903 | 4.3:-45778111 | MS.gene03780:CDS |
| GCCCAGGAAGAAGGTGGAAT+TGG | 0.389499 | 4.3:+45778168 | None:intergenic |
| CGTTTCAATGTTAGGTTCGT+TGG | 0.389722 | 4.3:-45777387 | MS.gene03780:CDS |
| TGAGGAAGTTGTTGATGGTT+TGG | 0.392597 | 4.3:-45777836 | MS.gene03780:CDS |
| GCCAGGAAGGGTGGCGTTGG+CGG | 0.393298 | 4.3:+45778211 | None:intergenic |
| ACCGTTTGATCTTTAACAAC+CGG | 0.396219 | 4.3:+45777967 | None:intergenic |
| GGAAGAAGGTGGAATTGGTT+TGG | 0.399453 | 4.3:+45778173 | None:intergenic |
| CTGGTCTCCTTTGCTTCATG+TGG | 0.401664 | 4.3:-45767801 | MS.gene03780:CDS |
| AGGCCCTTCATTCGTTTACT+TGG | 0.405222 | 4.3:-45777132 | MS.gene03780:CDS |
| GGAGTTCTTAGTCGAGGAAT+TGG | 0.408542 | 4.3:-45773682 | MS.gene03780:CDS |
| GTCCAACTGCTGCAATAGTT+GGG | 0.408837 | 4.3:+45775668 | None:intergenic |
| GCTTTCTTGCTTACAGAAGC+AGG | 0.411014 | 4.3:-45775218 | MS.gene03780:CDS |
| TGTGGGCAATGCTCACAGCT+TGG | 0.412579 | 4.3:-45767783 | MS.gene03780:CDS |
| TTAGTCTCACCAGAGAATTT+CGG | 0.413020 | 4.3:+45778126 | None:intergenic |
| ATACCATGCATCTTCTCTAT+TGG | 0.415257 | 4.3:-45773728 | MS.gene03780:CDS |
| ATTTCCCTATCCGTTACAAT+GGG | 0.417826 | 4.3:-45775057 | MS.gene03780:CDS |
| TCTCGCAATATCATCATAGT+TGG | 0.418972 | 4.3:-45767724 | MS.gene03780:CDS |
| GGAAGGTGTTTGTAGTGTCT+TGG | 0.420540 | 4.3:-45773656 | MS.gene03780:CDS |
| TCTTCCTGGGCGAAGAAAAC+CGG | 0.420722 | 4.3:-45778156 | MS.gene03780:CDS |
| CTTGTTATTGTTCCTGCCAT+GGG | 0.421112 | 4.3:-45777353 | MS.gene03780:CDS |
| CATTTAATCCTTGTAACTCT+GGG | 0.422116 | 4.3:+45777084 | None:intergenic |
| GGCTCCCTTCTGGCAACCTC+AGG | 0.424502 | 4.3:+45766667 | None:intergenic |
| TCAGTTGGCGGTGGCCAGGA+AGG | 0.424505 | 4.3:+45778198 | None:intergenic |
| GAAAATCCGACCAGCTCTCC+AGG | 0.426806 | 4.3:+45766618 | None:intergenic |
| CCGTTTAATGGAGGACGAAC+TGG | 0.426991 | 4.3:+45778036 | None:intergenic |
| GGGTGGCGTTGGCGGTTGTT+GGG | 0.430291 | 4.3:+45778219 | None:intergenic |
| ACAATTGCCGTGACTAAAAT+GGG | 0.430326 | 4.3:-45773580 | MS.gene03780:CDS |
| TCGAGATTGCCTTTGATACA+AGG | 0.430878 | 4.3:-45777152 | MS.gene03780:CDS |
| AGTCCAACTGCTGCAATAGT+TGG | 0.434333 | 4.3:+45775667 | None:intergenic |
| CAATACATGTACCCACTAAT+GGG | 0.435106 | 4.3:+45775623 | None:intergenic |
| ACCGGGGACGGGAACGGAGC+AGG | 0.439292 | 4.3:-45777887 | MS.gene03780:CDS |
| CCCTACATTGTCGCTTCTCA+CGG | 0.440908 | 4.3:-45767607 | MS.gene03780:CDS |
| GCGTTGGCGGTTGTTGGGAT+CGG | 0.443065 | 4.3:+45778224 | None:intergenic |
| GCGGCGGTTCAGGAGGAATC+CGG | 0.443778 | 4.3:+45778079 | None:intergenic |
| TTTCTAGGATGAAGCATTGT+CGG | 0.443828 | 4.3:-45775121 | MS.gene03780:CDS |
| TTCTAGGATGAAGCATTGTC+GGG | 0.445143 | 4.3:-45775120 | MS.gene03780:CDS |
| GGAATCAGTTGGCGGTGGCC+AGG | 0.448186 | 4.3:+45778194 | None:intergenic |
| GCTTGTTATTGTTCCTGCCA+TGG | 0.449436 | 4.3:-45777354 | MS.gene03780:CDS |
| GCCTGCTCCGTTCCCGTCCC+CGG | 0.451343 | 4.3:+45777886 | None:intergenic |
| GCGAACCCTGCACCGGGGAC+GGG | 0.452515 | 4.3:-45777898 | MS.gene03780:CDS |
| GTAGTTCCGATTGCGGTGTA+TGG | 0.452915 | 4.3:-45777422 | MS.gene03780:intron |
| GTAATTCCGGTCAGATAAAC+CGG | 0.455135 | 4.3:-45778098 | MS.gene03780:CDS |
| TTCAGGTGGGTGAAGTGGGT+TGG | 0.455235 | 4.3:-45766598 | MS.gene03780:CDS |
| CAGTTATGGATTCCCATTAG+TGG | 0.455831 | 4.3:-45775635 | MS.gene03780:CDS |
| AGGAGCGAGGGGTATATGTT+TGG | 0.457463 | 4.3:-45766696 | MS.gene03780:CDS |
| GGCGAACCCTGCACCGGGGA+CGG | 0.460338 | 4.3:-45777899 | MS.gene03780:CDS |
| AGAGAATTTCGGCTTAAAAC+CGG | 0.461051 | 4.3:+45778137 | None:intergenic |
| GGTGTTTGTAGTGTCTTGGC+TGG | 0.461548 | 4.3:-45773652 | MS.gene03780:CDS |
| GTGGCCAGGAAGGGTGGCGT+TGG | 0.464810 | 4.3:+45778208 | None:intergenic |
| CCTCGCTCCTGCCGACTGCC+AGG | 0.465146 | 4.3:+45766709 | None:intergenic |
| GCATCGAGACCTCCAACTCC+TGG | 0.467563 | 4.3:-45773703 | MS.gene03780:CDS |
| GGGGTGTTCCTGTCTTTCAC+TGG | 0.468349 | 4.3:-45775037 | MS.gene03780:CDS |
| GGCGCCAAGTAAACGAATGA+AGG | 0.468538 | 4.3:+45777128 | None:intergenic |
| GTTTCTTGTTGCTGTTATCC+TGG | 0.470083 | 4.3:-45766743 | MS.gene03780:CDS |
| CAAGCTCTACTTGGATATAC+CGG | 0.471928 | 4.3:-45776795 | MS.gene03780:CDS |
| GAGTTTATTATCACCAAAGC+CGG | 0.476403 | 4.3:+45777107 | None:intergenic |
| TCTTAGTCGAGGAATTGGTT+TGG | 0.477441 | 4.3:-45773677 | MS.gene03780:CDS |
| TGAATACCATACACCGCAAT+CGG | 0.481068 | 4.3:+45777416 | None:intergenic |
| ACCAATTCCACCTTCTTCCT+GGG | 0.481259 | 4.3:-45778169 | MS.gene03780:CDS |
| CGACTAAGAACTCCAGGAGT+TGG | 0.481544 | 4.3:+45773691 | None:intergenic |
| AGAAATGAGGAAGTTGTTGA+TGG | 0.484915 | 4.3:-45777841 | MS.gene03780:CDS |
| TTGTCGGGTTGATACTTCTC+AGG | 0.487884 | 4.3:-45775105 | MS.gene03780:CDS |
| TACTGTACCTGGCAGTCGGC+AGG | 0.488548 | 4.3:-45766716 | MS.gene03780:CDS |
| GAATGTGACCGTTCCGGTTG+CGG | 0.492986 | 4.3:-45777992 | MS.gene03780:CDS |
| TCTAACTGACAGATTCCTCT+TGG | 0.494730 | 4.3:-45775263 | MS.gene03780:intron |
| AGACCAGCAACCATAACTTC+AGG | 0.498914 | 4.3:+45767817 | None:intergenic |
| GACTTATGTCACTCTTAGTA+AGG | 0.499283 | 4.3:-45776773 | MS.gene03780:intron |
| CTGGCAGTCGGCAGGAGCGA+GGG | 0.501030 | 4.3:-45766708 | MS.gene03780:CDS |
| CCAGTTCGTCCTCCATTAAA+CGG | 0.501390 | 4.3:-45778036 | MS.gene03780:CDS |
| CCGTGAGAAGCGACAATGTA+GGG | 0.502956 | 4.3:+45767607 | None:intergenic |
| CTAAGAACTCCAGGAGTTGG+AGG | 0.503127 | 4.3:+45773694 | None:intergenic |
| TAATGGAGGACGAACTGGAC+CGG | 0.506760 | 4.3:+45778041 | None:intergenic |
| TTGGCGGTGGCCAGGAAGGG+TGG | 0.508080 | 4.3:+45778202 | None:intergenic |
| GTGGGTACATGTATTGAGAT+TGG | 0.510700 | 4.3:-45775616 | MS.gene03780:CDS |
| AAGATCAAACGGTGAAGAAA+CGG | 0.511106 | 4.3:-45777957 | MS.gene03780:CDS |
| CATATAATGAGGGAGCTTCA+GGG | 0.511243 | 4.3:-45776843 | MS.gene03780:CDS |
| TCCCCAACTATTGCAGCAGT+TGG | 0.512105 | 4.3:-45775670 | MS.gene03780:CDS |
| GAGGAGGACAGTGAGAAATG+AGG | 0.512504 | 4.3:-45777854 | MS.gene03780:CDS |
| CACACTTTGTTCGCTACACA+TGG | 0.512942 | 4.3:-45766773 | MS.gene03780:CDS |
| CCTGGCAGTCGGCAGGAGCG+AGG | 0.514393 | 4.3:-45766709 | MS.gene03780:CDS |
| TCCGGTTGTTAAAGATCAAA+CGG | 0.515328 | 4.3:-45777968 | MS.gene03780:CDS |
| CTCGCAATATCATCATAGTT+GGG | 0.515333 | 4.3:-45767723 | MS.gene03780:CDS |
| GGTTTGGTTGTTGATGATGA+AGG | 0.515499 | 4.3:-45777820 | MS.gene03780:CDS |
| CTTTCTTGCTTACAGAAGCA+GGG | 0.516220 | 4.3:-45775217 | MS.gene03780:CDS |
| AGTTATGGATTCCCATTAGT+GGG | 0.518231 | 4.3:-45775634 | MS.gene03780:CDS |
| TGGTCTCCTTTGCTTCATGT+GGG | 0.519331 | 4.3:-45767800 | MS.gene03780:CDS |
| GGACAGGCGAACCCTGCACC+GGG | 0.520751 | 4.3:-45777904 | MS.gene03780:CDS |
| TGGTGCAGTACAGATATTAG+TGG | 0.521644 | 4.3:-45775596 | MS.gene03780:CDS |
| AATGAAGGGCCTTGTATCAA+AGG | 0.522054 | 4.3:+45777143 | None:intergenic |
| CCGTTCCCGTCCCCGGTGCA+GGG | 0.524545 | 4.3:+45777893 | None:intergenic |
| TGGGCAATGCTCACAGCTTG+GGG | 0.524711 | 4.3:-45767781 | MS.gene03780:CDS |
| TGGACAGGCGAACCCTGCAC+CGG | 0.525285 | 4.3:-45777905 | MS.gene03780:CDS |
| TAATGTGAATGTGACCGTTC+CGG | 0.525462 | 4.3:-45777998 | MS.gene03780:CDS |
| TTCATTCGTTTACTTGGCGC+CGG | 0.525705 | 4.3:-45777126 | MS.gene03780:CDS |
| CCCTGCACCGGGGACGGGAA+CGG | 0.525779 | 4.3:-45777893 | MS.gene03780:CDS |
| CGGAGCAGGCGACGCAGGTG+AGG | 0.525858 | 4.3:-45777873 | MS.gene03780:CDS |
| TGAACCTGAGGTTGCCAGAA+GGG | 0.529846 | 4.3:-45766671 | MS.gene03780:CDS |
| GATTTCCCTATCCGTTACAA+TGG | 0.531946 | 4.3:-45775058 | MS.gene03780:CDS |
| CAGTTGGCGGTGGCCAGGAA+GGG | 0.533137 | 4.3:+45778199 | None:intergenic |
| GGAATTGGTTTGGAATCAGT+TGG | 0.536596 | 4.3:+45778183 | None:intergenic |
| CCATAATCTTTAGCAACAGC+AGG | 0.540453 | 4.3:+45766646 | None:intergenic |
| GGGAACGGAGCAGGCGACGC+AGG | 0.544821 | 4.3:-45777878 | MS.gene03780:CDS |
| TATGGGTTACCCTGGAGAGC+TGG | 0.546447 | 4.3:-45766628 | MS.gene03780:CDS |
| AGTCGAGGAATTGGTTTGGA+AGG | 0.547058 | 4.3:-45773673 | MS.gene03780:CDS |
| AGGAATCCGGTTTATCTGAC+CGG | 0.548192 | 4.3:+45778092 | None:intergenic |
| TGCCAGGTACAGTATTATCC+AGG | 0.549310 | 4.3:+45766725 | None:intergenic |
| CCATATTGTTGAAAGTAGGC+AGG | 0.553587 | 4.3:+45767673 | None:intergenic |
| CTAAAGATTATGGGTTACCC+TGG | 0.553736 | 4.3:-45766636 | MS.gene03780:CDS |
| AGGCATTGAAATCCTCTCCA+TGG | 0.555069 | 4.3:-45775085 | MS.gene03780:CDS |
| ATTGGTTTGGAATCAGTTGG+CGG | 0.555926 | 4.3:+45778186 | None:intergenic |
| ACATGAGAACCTCCCATGGC+AGG | 0.558714 | 4.3:+45777341 | None:intergenic |
| CCTCCATATTTGCTGTGGAA+AGG | 0.559497 | 4.3:+45767583 | None:intergenic |
| AGAAATTCAAGCATATAATG+AGG | 0.560821 | 4.3:-45776854 | MS.gene03780:CDS |
| AGCAGGCGACGCAGGTGAGG+AGG | 0.562777 | 4.3:-45777870 | MS.gene03780:CDS |
| AATCTACGCTACAGTGAAGC+CGG | 0.564278 | 4.3:-45767751 | MS.gene03780:CDS |
| TCTTGGTCTAGCAATTACTT+GGG | 0.564511 | 4.3:-45775246 | MS.gene03780:CDS |
| GGTTTCCTTAATCTCATCCG+TGG | 0.564532 | 4.3:-45774991 | MS.gene03780:CDS |
| GTTATTGTTCCTGCCATGGG+AGG | 0.565738 | 4.3:-45777350 | MS.gene03780:CDS |
| GAAATTCAAGCATATAATGA+GGG | 0.566196 | 4.3:-45776853 | MS.gene03780:CDS |
| TCTGAAACCATATTTGATGC+AGG | 0.567358 | 4.3:+45775161 | None:intergenic |
| AACCGGAACCGCAACCGGAA+CGG | 0.568462 | 4.3:+45777984 | None:intergenic |
| ATTCCTCGACTAAGAACTCC+AGG | 0.570179 | 4.3:+45773685 | None:intergenic |
| TTGTTGAAAGTAGGCAGGTA+CGG | 0.570766 | 4.3:+45767678 | None:intergenic |
| TACTAAGAGTGACATAAGTC+CGG | 0.572291 | 4.3:+45776776 | None:intergenic |
| TGGCAGTCGGCAGGAGCGAG+GGG | 0.572694 | 4.3:-45766707 | MS.gene03780:CDS |
| CCTACATTGTCGCTTCTCAC+GGG | 0.572971 | 4.3:-45767606 | MS.gene03780:CDS |
| TGTACCGCAGGTAAGATTGG+AGG | 0.573136 | 4.3:-45767856 | MS.gene03780:intron |
| CCGCAAGTCGATCTTGAAGC+CGG | 0.573457 | 4.3:-45778060 | MS.gene03780:CDS |
| ACACCCCATTGTAACGGATA+GGG | 0.581456 | 4.3:+45775053 | None:intergenic |
| ATAAACTCCCCAGAGTTACA+AGG | 0.582734 | 4.3:-45777092 | MS.gene03780:CDS |
| CGACAGTGTTGTTCGTTTCG+GGG | 0.585199 | 4.3:-45777205 | MS.gene03780:CDS |
| GTACCGCAGGTAAGATTGGA+GGG | 0.585292 | 4.3:-45767855 | MS.gene03780:intron |
| CCGTGACTAAAATGGGAAGC+CGG | 0.585644 | 4.3:-45773573 | MS.gene03780:CDS |
| CACCTAGTTGAACAGACAGC+CGG | 0.586835 | 4.3:+45773554 | None:intergenic |
| ATATGTTTGGTCTGAACCTG+AGG | 0.587555 | 4.3:-45766683 | MS.gene03780:CDS |
| GATGCCATATTGTTGAAAGT+AGG | 0.587903 | 4.3:+45767669 | None:intergenic |
| TCGACTTGCGGCGGTTCAGG+AGG | 0.594640 | 4.3:+45778072 | None:intergenic |
| CAAGTAATTGCTAGACCAAG+AGG | 0.594913 | 4.3:+45775248 | None:intergenic |
| TGTTCCGAGTACTAATGGAC+AGG | 0.600840 | 4.3:-45777920 | MS.gene03780:CDS |
| ATATAATGAGGGAGCTTCAG+GGG | 0.601585 | 4.3:-45776842 | MS.gene03780:CDS |
| ATAGTTGGGGATACAACTAC+AGG | 0.602089 | 4.3:+45775682 | None:intergenic |
| GCGCCAAGTAAACGAATGAA+GGG | 0.602735 | 4.3:+45777129 | None:intergenic |
| TCCAACTGCTGCAATAGTTG+GGG | 0.605533 | 4.3:+45775669 | None:intergenic |
| ATAATACTGTACCTGGCAGT+CGG | 0.607040 | 4.3:-45766720 | MS.gene03780:CDS |
| TTGTGTTGTAGTTCCGATTG+CGG | 0.607526 | 4.3:-45777429 | MS.gene03780:intron |
| CAAGAAACTAACCGAATCCA+CGG | 0.607559 | 4.3:+45774974 | None:intergenic |
| ATCCTGGATAATACTGTACC+TGG | 0.608997 | 4.3:-45766727 | MS.gene03780:CDS |
| TTCTTCGCCCAGGAAGAAGG+TGG | 0.612428 | 4.3:+45778162 | None:intergenic |
| GGTTTGGAATCAGTTGGCGG+TGG | 0.612818 | 4.3:+45778189 | None:intergenic |
| TTCGCCTGTCCATTAGTACT+CGG | 0.612946 | 4.3:+45777916 | None:intergenic |
| CTGAACCTGAGGTTGCCAGA+AGG | 0.613331 | 4.3:-45766672 | MS.gene03780:CDS |
| ATGTAGGGCTGAAAATAACT+TGG | 0.613350 | 4.3:+45767622 | None:intergenic |
| CTTTCCACAGCAAATATGGA+GGG | 0.614764 | 4.3:-45767582 | MS.gene03780:CDS |
| AGCCGGCTGTCTGTTCAACT+AGG | 0.616215 | 4.3:-45773556 | MS.gene03780:CDS |
| ACAGGAACACCCCATTGTAA+CGG | 0.618689 | 4.3:+45775047 | None:intergenic |
| CCTTTCCACAGCAAATATGG+AGG | 0.621317 | 4.3:-45767583 | MS.gene03780:CDS |
| AGTGTCTTGGCTGGTCTCTG+GGG | 0.625706 | 4.3:-45773643 | MS.gene03780:CDS |
| GGATAGGGAAATCTAAACCA+TGG | 0.629843 | 4.3:+45775068 | None:intergenic |
| GCATTGCCCACATGAAGCAA+AGG | 0.632613 | 4.3:+45767794 | None:intergenic |
| ATCAAACGGTGAAGAAACGG+AGG | 0.633249 | 4.3:-45777954 | MS.gene03780:CDS |
| TCCAAGTAGAGCTTGAAAAG+CGG | 0.636401 | 4.3:+45776803 | None:intergenic |
| AACACCCCATTGTAACGGAT+AGG | 0.641253 | 4.3:+45775052 | None:intergenic |
| AAAATCCGACCAGCTCTCCA+GGG | 0.644760 | 4.3:+45766619 | None:intergenic |
| ATTTAATCCTTGTAACTCTG+GGG | 0.644973 | 4.3:+45777085 | None:intergenic |
| GCAGGAGGACACTTCTAATG+TGG | 0.646551 | 4.3:-45777231 | MS.gene03780:intron |
| ATACCCCTCCATATTTGCTG+TGG | 0.646907 | 4.3:+45767578 | None:intergenic |
| GGTTACCCTGGAGAGCTGGT+CGG | 0.649922 | 4.3:-45766624 | MS.gene03780:CDS |
| GGGAAATCTAAACCATGGAG+AGG | 0.651944 | 4.3:+45775073 | None:intergenic |
| TTTCAAATTATACCTAAACC+AGG | 0.654853 | 4.3:+45777751 | None:intergenic |
| ACTCCTGGAGTTCTTAGTCG+AGG | 0.655987 | 4.3:-45773688 | MS.gene03780:CDS |
| CTACCAATAGAGAAGATGCA+TGG | 0.658196 | 4.3:+45773725 | None:intergenic |
| TTTCCACAGCAAATATGGAG+GGG | 0.658654 | 4.3:-45767581 | MS.gene03780:intron |
| GCTTCAAGATCGACTTGCGG+CGG | 0.659759 | 4.3:+45778063 | None:intergenic |
| AATGGCTCTTGTAATGTGTG+TGG | 0.665360 | 4.3:-45775012 | MS.gene03780:CDS |
| AAGAAACGGAGGGATTCTGA+TGG | 0.666170 | 4.3:-45777943 | MS.gene03780:CDS |
| TATAATGAGGGAGCTTCAGG+GGG | 0.670053 | 4.3:-45776841 | MS.gene03780:CDS |
| ACTCACATGAGAACCTCCCA+TGG | 0.670641 | 4.3:+45777337 | None:intergenic |
| CCCGTGAGAAGCGACAATGT+AGG | 0.674853 | 4.3:+45767606 | None:intergenic |
| ATGGCAGGAACAATAACAAG+CGG | 0.676925 | 4.3:+45777356 | None:intergenic |
| TGTACGACACCGTTTAATGG+AGG | 0.690085 | 4.3:+45778027 | None:intergenic |
| TCAAACGGTGAAGAAACGGA+GGG | 0.701700 | 4.3:-45777953 | MS.gene03780:CDS |
| TTTCCCTATCCGTTACAATG+GGG | 0.707261 | 4.3:-45775056 | MS.gene03780:CDS |
| CCGGCTTCAAGATCGACTTG+CGG | 0.709988 | 4.3:+45778060 | None:intergenic |
| GACAGGCGAACCCTGCACCG+GGG | 0.724935 | 4.3:-45777903 | MS.gene03780:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.3 | gene | 45766591 | 45778256 | 45766591 | ID=MS.gene03780 |
| chr4.3 | mRNA | 45766591 | 45778256 | 45766591 | ID=MS.gene03780.t1;Parent=MS.gene03780 |
| chr4.3 | exon | 45777764 | 45778256 | 45777764 | ID=MS.gene03780.t1.exon1;Parent=MS.gene03780.t1 |
| chr4.3 | CDS | 45777764 | 45778256 | 45777764 | ID=cds.MS.gene03780.t1;Parent=MS.gene03780.t1 |
| chr4.3 | exon | 45777343 | 45777440 | 45777343 | ID=MS.gene03780.t1.exon2;Parent=MS.gene03780.t1 |
| chr4.3 | CDS | 45777343 | 45777440 | 45777343 | ID=cds.MS.gene03780.t1;Parent=MS.gene03780.t1 |
| chr4.3 | exon | 45777076 | 45777249 | 45777076 | ID=MS.gene03780.t1.exon3;Parent=MS.gene03780.t1 |
| chr4.3 | CDS | 45777076 | 45777249 | 45777076 | ID=cds.MS.gene03780.t1;Parent=MS.gene03780.t1 |
| chr4.3 | exon | 45776774 | 45776874 | 45776774 | ID=MS.gene03780.t1.exon4;Parent=MS.gene03780.t1 |
| chr4.3 | CDS | 45776774 | 45776874 | 45776774 | ID=cds.MS.gene03780.t1;Parent=MS.gene03780.t1 |
| chr4.3 | exon | 45775579 | 45775714 | 45775579 | ID=MS.gene03780.t1.exon5;Parent=MS.gene03780.t1 |
| chr4.3 | CDS | 45775579 | 45775714 | 45775579 | ID=cds.MS.gene03780.t1;Parent=MS.gene03780.t1 |
| chr4.3 | exon | 45775376 | 45775426 | 45775376 | ID=MS.gene03780.t1.exon6;Parent=MS.gene03780.t1 |
| chr4.3 | CDS | 45775376 | 45775426 | 45775376 | ID=cds.MS.gene03780.t1;Parent=MS.gene03780.t1 |
| chr4.3 | exon | 45774986 | 45775273 | 45774986 | ID=MS.gene03780.t1.exon7;Parent=MS.gene03780.t1 |
| chr4.3 | CDS | 45774986 | 45775273 | 45774986 | ID=cds.MS.gene03780.t1;Parent=MS.gene03780.t1 |
| chr4.3 | exon | 45773524 | 45773758 | 45773524 | ID=MS.gene03780.t1.exon8;Parent=MS.gene03780.t1 |
| chr4.3 | CDS | 45773524 | 45773758 | 45773524 | ID=cds.MS.gene03780.t1;Parent=MS.gene03780.t1 |
| chr4.3 | exon | 45767582 | 45767868 | 45767582 | ID=MS.gene03780.t1.exon9;Parent=MS.gene03780.t1 |
| chr4.3 | CDS | 45767582 | 45767868 | 45767582 | ID=cds.MS.gene03780.t1;Parent=MS.gene03780.t1 |
| chr4.3 | exon | 45766591 | 45766812 | 45766591 | ID=MS.gene03780.t1.exon10;Parent=MS.gene03780.t1 |
| chr4.3 | CDS | 45766591 | 45766812 | 45766591 | ID=cds.MS.gene03780.t1;Parent=MS.gene03780.t1 |
| Gene Sequence |
| Protein sequence |
