Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene046435.t1 | XP_003613041.2 | 97.9 | 514 | 11 | 0 | 6 | 519 | 188 | 701 | 1.40E-280 | 974.9 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene046435.t1 | Q6SZ87 | 73.8 | 507 | 133 | 0 | 6 | 512 | 195 | 701 | 3.2e-220 | 765.8 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene046435.t1 | G7JWD8 | 97.9 | 514 | 11 | 0 | 6 | 519 | 188 | 701 | 1.0e-280 | 974.9 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene046435 | MS.gene52774 | PPI |
| MS.gene07703 | MS.gene046435 | PPI |
| MS.gene046435 | MS.gene89983 | PPI |
| MS.gene046435 | MS.gene43080 | PPI |
| MS.gene046435 | MS.gene014350 | PPI |
| MS.gene046435 | MS.gene90652 | PPI |
| MS.gene046435 | MS.gene064832 | PPI |
| MS.gene073086 | MS.gene046435 | PPI |
| MS.gene046435 | MS.gene78124 | PPI |
| MS.gene046435 | MS.gene03780 | PPI |
| MS.gene046435 | MS.gene35372 | PPI |
| MS.gene046435 | MS.gene69330 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene046435.t1 | MTR_5g032020 | 97.860 | 514 | 11 | 0 | 6 | 519 | 188 | 701 | 0.0 | 1021 |
| MS.gene046435.t1 | MTR_8g068550 | 83.268 | 514 | 86 | 0 | 6 | 519 | 246 | 759 | 0.0 | 900 |
| MS.gene046435.t1 | MTR_2g084895 | 56.977 | 516 | 220 | 1 | 6 | 519 | 167 | 682 | 0.0 | 607 |
| MS.gene046435.t1 | MTR_4g055290 | 57.253 | 517 | 212 | 3 | 6 | 519 | 174 | 684 | 0.0 | 597 |
| MS.gene046435.t1 | MTR_2g103510 | 50.775 | 516 | 218 | 3 | 6 | 519 | 114 | 595 | 0.0 | 537 |
| MS.gene046435.t1 | MTR_8g086520 | 36.893 | 515 | 289 | 5 | 1 | 511 | 35 | 517 | 1.84e-111 | 341 |
| MS.gene046435.t1 | MTR_3g080390 | 37.597 | 516 | 285 | 6 | 1 | 511 | 30 | 513 | 9.54e-111 | 339 |
| MS.gene046435.t1 | MTR_3g078270 | 35.203 | 517 | 297 | 4 | 1 | 511 | 41 | 525 | 3.22e-107 | 330 |
| MS.gene046435.t1 | MTR_4g106750 | 34.623 | 517 | 300 | 4 | 1 | 511 | 41 | 525 | 1.72e-106 | 328 |
| MS.gene046435.t1 | MTR_8g063220 | 35.590 | 517 | 295 | 5 | 1 | 511 | 42 | 526 | 3.17e-106 | 328 |
| MS.gene046435.t1 | MTR_2g016460 | 34.766 | 512 | 298 | 4 | 4 | 511 | 38 | 517 | 2.05e-105 | 325 |
| MS.gene046435.t1 | MTR_4g106750 | 34.783 | 506 | 292 | 4 | 12 | 511 | 3 | 476 | 2.62e-104 | 321 |
| MS.gene046435.t1 | MTR_8g086520 | 39.480 | 423 | 236 | 3 | 1 | 421 | 35 | 439 | 9.31e-102 | 314 |
| MS.gene046435.t1 | MTR_5g035180 | 34.170 | 518 | 302 | 4 | 1 | 511 | 46 | 531 | 1.85e-101 | 315 |
| MS.gene046435.t1 | MTR_3g103230 | 32.882 | 517 | 306 | 6 | 1 | 511 | 66 | 547 | 3.23e-94 | 297 |
| MS.gene046435.t1 | MTR_1g021120 | 32.882 | 517 | 307 | 5 | 1 | 511 | 58 | 540 | 2.99e-90 | 287 |
| MS.gene046435.t1 | MTR_1g106085 | 33.074 | 514 | 304 | 7 | 4 | 511 | 41 | 520 | 1.43e-89 | 284 |
| MS.gene046435.t1 | MTR_8g086520 | 36.215 | 428 | 239 | 4 | 86 | 511 | 6 | 401 | 2.17e-87 | 275 |
| MS.gene046435.t1 | MTR_8g086520 | 37.859 | 383 | 218 | 3 | 1 | 381 | 35 | 399 | 5.82e-86 | 271 |
| MS.gene046435.t1 | MTR_5g022110 | 33.268 | 514 | 302 | 5 | 4 | 511 | 62 | 540 | 8.77e-86 | 275 |
| MS.gene046435.t1 | MTR_4g106750 | 32.405 | 395 | 231 | 3 | 121 | 511 | 11 | 373 | 1.54e-71 | 233 |
| MS.gene046435.t1 | MTR_8g086535 | 41.573 | 89 | 52 | 0 | 293 | 381 | 27 | 115 | 1.81e-15 | 73.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene046435.t1 | AT4G38050 | 73.010 | 515 | 134 | 1 | 6 | 515 | 195 | 709 | 0.0 | 761 |
| MS.gene046435.t1 | AT2G27810 | 59.768 | 517 | 205 | 2 | 6 | 519 | 189 | 705 | 0.0 | 593 |
| MS.gene046435.t1 | AT2G27810 | 57.301 | 541 | 204 | 3 | 6 | 519 | 189 | 729 | 0.0 | 583 |
| MS.gene046435.t1 | AT2G27810 | 63.591 | 401 | 145 | 1 | 6 | 405 | 189 | 589 | 5.28e-164 | 478 |
| MS.gene046435.t1 | AT2G27810 | 64.124 | 354 | 126 | 1 | 6 | 358 | 189 | 542 | 7.15e-142 | 419 |
| MS.gene046435.t1 | AT1G60030 | 38.104 | 517 | 282 | 4 | 1 | 511 | 47 | 531 | 1.85e-119 | 362 |
| MS.gene046435.t1 | AT2G05760 | 38.372 | 516 | 281 | 5 | 1 | 511 | 30 | 513 | 1.52e-111 | 341 |
| MS.gene046435.t1 | AT2G34190 | 36.133 | 512 | 291 | 5 | 4 | 511 | 38 | 517 | 1.15e-109 | 336 |
| MS.gene046435.t1 | AT5G62890 | 35.590 | 517 | 295 | 4 | 1 | 511 | 41 | 525 | 3.01e-108 | 333 |
| MS.gene046435.t1 | AT5G62890 | 35.590 | 517 | 295 | 4 | 1 | 511 | 41 | 525 | 3.01e-108 | 333 |
| MS.gene046435.t1 | AT5G62890 | 35.590 | 517 | 295 | 4 | 1 | 511 | 41 | 525 | 3.01e-108 | 333 |
| MS.gene046435.t1 | AT5G49990 | 35.590 | 517 | 295 | 6 | 1 | 511 | 37 | 521 | 6.16e-106 | 327 |
| MS.gene046435.t1 | AT5G49990 | 35.590 | 517 | 295 | 6 | 1 | 511 | 37 | 521 | 6.16e-106 | 327 |
| MS.gene046435.t1 | AT5G49990 | 35.590 | 517 | 295 | 6 | 1 | 511 | 37 | 521 | 6.16e-106 | 327 |
| MS.gene046435.t1 | AT5G49990 | 35.590 | 517 | 295 | 6 | 1 | 511 | 37 | 521 | 6.16e-106 | 327 |
| MS.gene046435.t1 | AT1G10540 | 34.608 | 523 | 297 | 8 | 1 | 512 | 45 | 533 | 1.48e-102 | 318 |
| MS.gene046435.t1 | AT1G49960 | 36.381 | 514 | 289 | 6 | 4 | 511 | 38 | 519 | 1.82e-99 | 310 |
| MS.gene046435.t1 | AT5G62890 | 36.585 | 451 | 252 | 3 | 1 | 449 | 41 | 459 | 1.23e-97 | 304 |
| MS.gene046435.t1 | AT2G26510 | 34.749 | 518 | 297 | 6 | 1 | 511 | 59 | 542 | 8.22e-89 | 283 |
| MS.gene046435.t1 | AT1G65550 | 32.246 | 521 | 306 | 7 | 4 | 511 | 48 | 534 | 1.03e-84 | 272 |
| MS.gene046435.t1 | AT1G10540 | 34.890 | 364 | 210 | 5 | 1 | 357 | 45 | 388 | 5.46e-72 | 234 |
| MS.gene046435.t1 | AT2G26510 | 37.430 | 358 | 200 | 4 | 4 | 357 | 62 | 399 | 9.15e-64 | 213 |
| MS.gene046435.t1 | AT2G26510 | 37.500 | 360 | 200 | 5 | 1 | 355 | 59 | 398 | 1.38e-60 | 206 |
| MS.gene046435.t1 | AT5G25420 | 29.524 | 420 | 208 | 6 | 4 | 421 | 60 | 393 | 2.67e-52 | 183 |
Find 135 sgRNAs with CRISPR-Local
Find 206 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CGACATGACTTACTTGTTTA+AGG | 0.077021 | 5.1:+22018794 | None:intergenic |
| TCTACAATGTTGTTTCTTTC+TGG | 0.096859 | 5.1:-22021201 | MS.gene046435:CDS |
| AATTAACATGATTATGTTCT+TGG | 0.164178 | 5.1:-22021494 | None:intergenic |
| TAGTATATTGGCTGGTCTTT+GGG | 0.186238 | 5.1:-22019356 | MS.gene046435:CDS |
| CTTCGAGGAATATCTATTTC+TGG | 0.201431 | 5.1:-22019993 | MS.gene046435:CDS |
| TCTTATACTGCCAAGTTATT+TGG | 0.212524 | 5.1:-22018857 | MS.gene046435:CDS |
| GAAGTTCTGAAGTGGAAAAT+AGG | 0.219053 | 5.1:+22019618 | None:intergenic |
| GTAGTATATTGGCTGGTCTT+TGG | 0.248801 | 5.1:-22019357 | MS.gene046435:CDS |
| TGCTTCCATTCCACAGGCCT+TGG | 0.253689 | 5.1:-22019046 | MS.gene046435:CDS |
| TTGGCTGGTCTTTGGGGTTC+AGG | 0.262793 | 5.1:-22019349 | MS.gene046435:CDS |
| GGTCTTTGGGGTTCAGGTAC+TGG | 0.274416 | 5.1:-22019343 | MS.gene046435:CDS |
| CCTCGTTCTTGTTTACTTCC+CGG | 0.284283 | 5.1:+22018552 | None:intergenic |
| TTCAATATTCCAATGTATCT+TGG | 0.297916 | 5.1:-22020808 | MS.gene046435:CDS |
| TTGGTCCTGTTCTCATTTGT+AGG | 0.314821 | 5.1:-22019235 | MS.gene046435:intron |
| TGACACTATGACCATGATTA+TGG | 0.319148 | 5.1:+22019596 | None:intergenic |
| CAATGTATCTTGGGATTTAG+TGG | 0.331523 | 5.1:-22020798 | MS.gene046435:CDS |
| GTCGGCGTTGCATTGTTTCT+TGG | 0.342139 | 5.1:-22018925 | MS.gene046435:CDS |
| TGCTCTTATGTCCATGAATA+TGG | 0.354965 | 5.1:-22018616 | MS.gene046435:CDS |
| ACTATACTGCACTCTTACTT+TGG | 0.356514 | 5.1:-22021171 | MS.gene046435:CDS |
| GGAGGGTTTCTGTAGTATAT+TGG | 0.361128 | 5.1:-22019368 | MS.gene046435:CDS |
| ATGACTGGTACCATGACTAA+TGG | 0.362103 | 5.1:+22021350 | None:intergenic |
| GGTTTAGCGTTCTTCAGTTA+TGG | 0.366080 | 5.1:-22020261 | MS.gene046435:CDS |
| GTGGGCTCTTACTGTGGCAT+TGG | 0.366721 | 5.1:-22019001 | MS.gene046435:CDS |
| ACTGTTGGCGCAACCACAAC+AGG | 0.369199 | 5.1:+22020294 | None:intergenic |
| ATCAGCCCTGCAATGCTTCA+TGG | 0.374512 | 5.1:+22019704 | None:intergenic |
| CATATACCATGAAGCATTGC+AGG | 0.376910 | 5.1:-22019710 | MS.gene046435:CDS |
| TCAATATTCCAATGTATCTT+GGG | 0.377573 | 5.1:-22020807 | MS.gene046435:CDS |
| ATGGTCAATCAGCCAGCTTC+AGG | 0.397058 | 5.1:-22018960 | MS.gene046435:CDS |
| ATTCCTCGGCTCACAACTCC+TGG | 0.404762 | 5.1:+22019397 | None:intergenic |
| TTACTTGTTTAAGGCCTGAA+TGG | 0.405824 | 5.1:+22018803 | None:intergenic |
| CAGTGTTACCACCATATTCA+TGG | 0.409074 | 5.1:+22018605 | None:intergenic |
| TCAAGTGGACCATTCCATTC+AGG | 0.411220 | 5.1:-22018817 | MS.gene046435:CDS |
| CGTTGAGCGCAACAATAACT+TGG | 0.418430 | 5.1:-22019836 | MS.gene046435:CDS |
| ATGTTTGAACTCGGTACATT+GGG | 0.420675 | 5.1:+22019759 | None:intergenic |
| GGCCTATCGACTTTACAATA+TGG | 0.423233 | 5.1:-22018979 | MS.gene046435:CDS |
| CCACTTGATGCTGCCGCATA+AGG | 0.423237 | 5.1:+22018832 | None:intergenic |
| AAACAACATTGTAGAAATTA+CGG | 0.423737 | 5.1:+22021209 | None:intergenic |
| CATCACTTCAAGTTAATTCA+AGG | 0.425950 | 5.1:-22019429 | MS.gene046435:CDS |
| TTATAAATGCTCAAGAATAT+CGG | 0.433551 | 5.1:-22021089 | MS.gene046435:CDS |
| TGACTGGTACCATGACTAAT+GGG | 0.437934 | 5.1:+22021351 | None:intergenic |
| TGGGCTCTTACTGTGGCATT+GGG | 0.440254 | 5.1:-22019000 | MS.gene046435:CDS |
| AAGTTCTGAAGTGGAAAATA+GGG | 0.442998 | 5.1:+22019619 | None:intergenic |
| TCCACAAGCTGGTATTTGCT+TGG | 0.443162 | 5.1:-22020235 | MS.gene046435:CDS |
| ACTGGTTGCTTCTGTTGATT+CGG | 0.443347 | 5.1:-22019574 | MS.gene046435:intron |
| CTCCAAGGTGCTATAATTGT+TGG | 0.443587 | 5.1:-22020831 | MS.gene046435:CDS |
| AACGAGCTCCCTTGCACTAA+AGG | 0.444458 | 5.1:+22021138 | None:intergenic |
| CTCGTTCTTGTTTACTTCCC+GGG | 0.450845 | 5.1:+22018553 | None:intergenic |
| ACTGTTGGTGGCATTTCTAC+TGG | 0.451648 | 5.1:-22018586 | MS.gene046435:CDS |
| TCTCCTTGCTTCCATTCCAC+AGG | 0.455637 | 5.1:-22019052 | MS.gene046435:CDS |
| CAGCATAAATTCGAAATAAG+TGG | 0.456937 | 5.1:+22019967 | None:intergenic |
| CTTACAGCACTATATATCAT+TGG | 0.465141 | 5.1:-22021393 | MS.gene046435:intron |
| AATAGAACCAGTGCAATTTG+TGG | 0.467577 | 5.1:+22020201 | None:intergenic |
| CTCACAACTCCTGGAGTTGG+AGG | 0.475666 | 5.1:+22019406 | None:intergenic |
| TTTCATGTGGGCTCTTACTG+TGG | 0.476194 | 5.1:-22019007 | MS.gene046435:CDS |
| ATTAGTCATGGTACCAGTCA+TGG | 0.477474 | 5.1:-22021348 | MS.gene046435:CDS |
| GGTTTCTGTAGTATATTGGC+TGG | 0.490990 | 5.1:-22019364 | MS.gene046435:CDS |
| CGGCTCACAACTCCTGGAGT+TGG | 0.492387 | 5.1:+22019403 | None:intergenic |
| CTTTACCTACAAATGAGAAC+AGG | 0.496522 | 5.1:+22019230 | None:intergenic |
| AATGTTTGAACTCGGTACAT+TGG | 0.497178 | 5.1:+22019758 | None:intergenic |
| ATACCCCACTGTAAAGGATA+AGG | 0.497905 | 5.1:+22019642 | None:intergenic |
| CTCGTTTGTGTATTTAGCAC+CGG | 0.498548 | 5.1:-22021121 | MS.gene046435:CDS |
| CTTCAGAACTTCCATAATCA+TGG | 0.502150 | 5.1:-22019607 | MS.gene046435:CDS |
| AATCATGGTCATAGTGTCAC+TGG | 0.503235 | 5.1:-22019592 | MS.gene046435:CDS |
| GATTGTCATGTTCCTGAAGC+TGG | 0.506073 | 5.1:+22018948 | None:intergenic |
| CACTGTTCCACAAATTGCAC+TGG | 0.509249 | 5.1:-22020208 | MS.gene046435:CDS |
| TGCTATACTGTGTTTCATGT+GGG | 0.512633 | 5.1:-22019019 | MS.gene046435:CDS |
| AGTCGGAGAGTAGTGGAACT+TGG | 0.516038 | 5.1:-22019268 | MS.gene046435:CDS |
| GCGCCAACAGTTGCTGCTGT+TGG | 0.519695 | 5.1:-22020282 | MS.gene046435:CDS |
| AATTCAAGGCCTCCAACTCC+AGG | 0.519913 | 5.1:-22019415 | MS.gene046435:CDS |
| AGAAATTTAGACACATAATG+AGG | 0.521098 | 5.1:-22020857 | MS.gene046435:CDS |
| ATGCATTGTCTACTGCTGCA+TGG | 0.523315 | 5.1:-22019674 | MS.gene046435:CDS |
| CAGCACTATATATCATTGGC+TGG | 0.524188 | 5.1:-22021389 | MS.gene046435:CDS |
| ACATCTGTTCCACCCATGAC+TGG | 0.524518 | 5.1:+22021335 | None:intergenic |
| CTGCTATACTGTGTTTCATG+TGG | 0.524664 | 5.1:-22019020 | MS.gene046435:CDS |
| GCATTTATAATGACTAATGC+CGG | 0.525117 | 5.1:+22021102 | None:intergenic |
| TGCATTGTCTACTGCTGCAT+GGG | 0.526144 | 5.1:-22019673 | MS.gene046435:CDS |
| AATTCCTTATCCTTTACAGT+GGG | 0.530316 | 5.1:-22019646 | MS.gene046435:CDS |
| CTACTGGACAACACTGTCCC+GGG | 0.530706 | 5.1:-22018570 | MS.gene046435:CDS |
| AAGTTATTTGGTTCCTTATG+CGG | 0.533121 | 5.1:-22018845 | MS.gene046435:CDS |
| AGTATATTGGCTGGTCTTTG+GGG | 0.537211 | 5.1:-22019355 | MS.gene046435:CDS |
| TTGTTGAAAATAAGATGGAA+TGG | 0.538242 | 5.1:+22018897 | None:intergenic |
| TCTACTGGACAACACTGTCC+CGG | 0.540937 | 5.1:-22018571 | MS.gene046435:CDS |
| AACCCTCCAATGCAATTCCT+CGG | 0.543888 | 5.1:+22019383 | None:intergenic |
| AGCCGAGGAATTGCATTGGA+GGG | 0.544530 | 5.1:-22019385 | MS.gene046435:CDS |
| CAAGTTATTGTTGCGCTCAA+CGG | 0.544576 | 5.1:+22019837 | None:intergenic |
| ACTGGTTCTATTATTCACTC+TGG | 0.546255 | 5.1:-22020190 | MS.gene046435:intron |
| GCATAAGGAACCAAATAACT+TGG | 0.546516 | 5.1:+22018847 | None:intergenic |
| ATAGGGATACCCCACTGTAA+AGG | 0.546733 | 5.1:+22019636 | None:intergenic |
| CTCGACTTCCTTTAGTGCAA+GGG | 0.547121 | 5.1:-22021146 | MS.gene046435:CDS |
| AACTTGCGTGGTGTTGCTGT+TGG | 0.559012 | 5.1:-22018455 | MS.gene046435:CDS |
| CACTAAATCCCAAGATACAT+TGG | 0.559536 | 5.1:+22020799 | None:intergenic |
| TGTTTAAGGCCTGAATGGAA+TGG | 0.562823 | 5.1:+22018808 | None:intergenic |
| TGGTATTGTTGAAAATAAGA+TGG | 0.563797 | 5.1:+22018892 | None:intergenic |
| TGTATTAATCCCATTAGTCA+TGG | 0.565064 | 5.1:-22021360 | MS.gene046435:CDS |
| GAGCCGAGGAATTGCATTGG+AGG | 0.566036 | 5.1:-22019386 | MS.gene046435:CDS |
| ACTCGACTTCCTTTAGTGCA+AGG | 0.567537 | 5.1:-22021147 | MS.gene046435:CDS |
| AGCAGCCAAGGCCTGTGGAA+TGG | 0.570357 | 5.1:+22019041 | None:intergenic |
| TGTGAGCCGAGGAATTGCAT+TGG | 0.574624 | 5.1:-22019389 | MS.gene046435:CDS |
| TTAGTCATGGTACCAGTCAT+GGG | 0.575195 | 5.1:-22021347 | MS.gene046435:CDS |
| ACACAGTATAGCAGCAGCCA+AGG | 0.577141 | 5.1:+22019029 | None:intergenic |
| TCCAAGCAAATACCAGCTTG+TGG | 0.580768 | 5.1:+22020234 | None:intergenic |
| GCTTCATGTCTATCCTACTC+AGG | 0.581708 | 5.1:-22020776 | MS.gene046435:intron |
| AACCAACAATTATAGCACCT+TGG | 0.584869 | 5.1:+22020829 | None:intergenic |
| CCTTATGCGGCAGCATCAAG+TGG | 0.585461 | 5.1:-22018832 | MS.gene046435:CDS |
| GGTGGCAAGTCGGAGAGTAG+TGG | 0.596711 | 5.1:-22019275 | MS.gene046435:CDS |
| GTATAAGACTTGACTCAGGC+TGG | 0.598503 | 5.1:+22018872 | None:intergenic |
| TAGGTTAATCAACCCTGTTG+TGG | 0.603357 | 5.1:-22020307 | MS.gene046435:CDS |
| TGATTATGGAAGTTCTGAAG+TGG | 0.603711 | 5.1:+22019610 | None:intergenic |
| CACAATTAACATCACAAAGG+TGG | 0.604324 | 5.1:-22019293 | MS.gene046435:CDS |
| GACCATATTGTAAAGTCGAT+AGG | 0.606309 | 5.1:+22018977 | None:intergenic |
| AGGCCTGTGGAATGGAAGCA+AGG | 0.607804 | 5.1:+22019049 | None:intergenic |
| TTCAGGAACATGACAATCGT+CGG | 0.609511 | 5.1:-22018943 | MS.gene046435:CDS |
| AAACCAACAGCAGCAACTGT+TGG | 0.615353 | 5.1:+22020279 | None:intergenic |
| AAGAACGAGGAGTGTATACA+TGG | 0.615795 | 5.1:-22018539 | MS.gene046435:CDS |
| GAATTCCTTATCCTTTACAG+TGG | 0.622024 | 5.1:-22019647 | MS.gene046435:CDS |
| GAAATTTAGACACATAATGA+GGG | 0.622060 | 5.1:-22020856 | MS.gene046435:CDS |
| TGCAGCAGTAGACAATGCAT+CGG | 0.629989 | 5.1:+22019677 | None:intergenic |
| ATAGCAGCAGCCAAGGCCTG+TGG | 0.643514 | 5.1:+22019036 | None:intergenic |
| TATGGTGGTAACACTGTTGG+TGG | 0.647873 | 5.1:-22018598 | MS.gene046435:CDS |
| ACATCACAAAGGTGGCAAGT+CGG | 0.649323 | 5.1:-22019285 | MS.gene046435:CDS |
| GAATATGGTGGTAACACTGT+TGG | 0.652162 | 5.1:-22018601 | MS.gene046435:CDS |
| GGCAGTATAAGACTTGACTC+AGG | 0.653391 | 5.1:+22018868 | None:intergenic |
| TCAGTAAGAATGTTTGAACT+CGG | 0.660703 | 5.1:+22019750 | None:intergenic |
| GTCATGGTACCAGTCATGGG+TGG | 0.663447 | 5.1:-22021344 | MS.gene046435:CDS |
| CACATAATGAGGGAACTCCA+AGG | 0.664361 | 5.1:-22020846 | MS.gene046435:CDS |
| ATTCCTTATCCTTTACAGTG+GGG | 0.666964 | 5.1:-22019645 | MS.gene046435:CDS |
| ATATACCATGAAGCATTGCA+GGG | 0.667424 | 5.1:-22019709 | MS.gene046435:CDS |
| AGATTGCAGTGAGGCATCCG+CGG | 0.668107 | 5.1:+22018497 | None:intergenic |
| ACTCCAGGAGTTGTGAGCCG+AGG | 0.668659 | 5.1:-22019400 | MS.gene046435:CDS |
| CCGGGAAGTAAACAAGAACG+AGG | 0.685706 | 5.1:-22018552 | MS.gene046435:CDS |
| CTGTTGGCGCAACCACAACA+GGG | 0.686653 | 5.1:+22020295 | None:intergenic |
| CGAATATTCAGATTGCAGTG+AGG | 0.708077 | 5.1:+22018488 | None:intergenic |
| GAGAGCTGAAGACATTGCCG+CGG | 0.710630 | 5.1:-22018514 | MS.gene046435:CDS |
| GCACACAATTAACATCACAA+AGG | 0.716995 | 5.1:-22019296 | MS.gene046435:CDS |
| TCTTATGTCCATGAATATGG+TGG | 0.729175 | 5.1:-22018613 | MS.gene046435:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AAAATGAATTATTTCTTTTT+TGG | + | chr5.1:22018472-22018491 | None:intergenic | 10.0% |
| !!! | AATTGTATTTTTTATTTTGT+AGG | - | chr5.1:22020846-22020865 | MS.gene046435:CDS | 10.0% |
| !! | AAATATTTGAACTTCAATTT+AGG | + | chr5.1:22020800-22020819 | None:intergenic | 15.0% |
| !!! | AATTACTTTTAAATATTTGC+AGG | - | chr5.1:22020071-22020090 | MS.gene046435:intron | 15.0% |
| !!! | ATCATATTTACATTTTTAGT+TGG | - | chr5.1:22020387-22020406 | MS.gene046435:intron | 15.0% |
| !!! | TACTTAAAAACTTGTTTAAA+CGG | - | chr5.1:22021199-22021218 | MS.gene046435:CDS | 15.0% |
| !! | AAACAACATTGTAGAAATTA+CGG | + | chr5.1:22018727-22018746 | None:intergenic | 20.0% |
| !! | AAGATATGAAAATTAATCCT+AGG | + | chr5.1:22019399-22019418 | None:intergenic | 20.0% |
| !! | GTTCAAATATTTCTTTATAC+AGG | - | chr5.1:22020808-22020827 | MS.gene046435:CDS | 20.0% |
| !! | TGTGAATAGATAAAAATTTG+AGG | + | chr5.1:22018670-22018689 | None:intergenic | 20.0% |
| !! | TTACAAATCACGTTAAAATT+TGG | - | chr5.1:22018989-22019008 | MS.gene046435:CDS | 20.0% |
| !! | TTATAAATGCTCAAGAATAT+CGG | - | chr5.1:22018844-22018863 | MS.gene046435:CDS | 20.0% |
| !!! | AATTTTGTAATTATGGACTT+TGG | + | chr5.1:22020746-22020765 | None:intergenic | 20.0% |
| !!! | TTATCTGAAAAGTTTTCTAA+TGG | - | chr5.1:22019799-22019818 | MS.gene046435:CDS | 20.0% |
| !!! | TTTTATTTTGTAGGAAAAGT+GGG | - | chr5.1:22020855-22020874 | MS.gene046435:CDS | 20.0% |
| !!! | TTTTTATTTTGTAGGAAAAG+TGG | - | chr5.1:22020854-22020873 | MS.gene046435:CDS | 20.0% |
| ! | AAATATGCAGGATTGAATAT+GGG | + | chr5.1:22019049-22019068 | None:intergenic | 25.0% |
| ! | AACATGACAAAAAGAAGAAA+TGG | + | chr5.1:22019910-22019929 | None:intergenic | 25.0% |
| ! | AACTATTTACAATTTGTCGT+AGG | - | chr5.1:22019607-22019626 | MS.gene046435:CDS | 25.0% |
| ! | AGAAATTTAGACACATAATG+AGG | - | chr5.1:22019076-22019095 | MS.gene046435:intron | 25.0% |
| ! | CTTGATTTATAAACATGTCA+TGG | - | chr5.1:22019843-22019862 | MS.gene046435:CDS | 25.0% |
| ! | GAAATTTAGACACATAATGA+GGG | - | chr5.1:22019077-22019096 | MS.gene046435:intron | 25.0% |
| ! | GCTGTAAGTATTCTTAAATT+AGG | - | chr5.1:22019985-22020004 | MS.gene046435:CDS | 25.0% |
| ! | GGTGTATAATTAAATACAGT+TGG | - | chr5.1:22021226-22021245 | MS.gene046435:intron | 25.0% |
| ! | TCAATATTCCAATGTATCTT+GGG | - | chr5.1:22019126-22019145 | MS.gene046435:intron | 25.0% |
| ! | TGGTATTGTTGAAAATAAGA+TGG | + | chr5.1:22021044-22021063 | None:intergenic | 25.0% |
| ! | TTCAATATTCCAATGTATCT+TGG | - | chr5.1:22019125-22019144 | MS.gene046435:intron | 25.0% |
| ! | TTGTTGAAAATAAGATGGAA+TGG | + | chr5.1:22021039-22021058 | None:intergenic | 25.0% |
| !! | ACACAAGAAAAAAGACATTT+TGG | + | chr5.1:22019220-22019239 | None:intergenic | 25.0% |
| !! | TATTGATAATACGATGATAC+AGG | + | chr5.1:22019464-22019483 | None:intergenic | 25.0% |
| !! | TTTCTGTTTGTTAATGTAGT+AGG | + | chr5.1:22018892-22018911 | None:intergenic | 25.0% |
| !!! | ATTTTAACGTGATTTGTAAC+AGG | + | chr5.1:22018988-22019007 | None:intergenic | 25.0% |
| !!! | TCATAAGTGTTCGTTATTTT+AGG | + | chr5.1:22020052-22020071 | None:intergenic | 25.0% |
| !!! | TTTTAAGTAGTACAACAATG+AGG | + | chr5.1:22021188-22021207 | None:intergenic | 25.0% |
| AATTCCTTATCCTTTACAGT+GGG | - | chr5.1:22020287-22020306 | MS.gene046435:CDS | 30.0% | |
| ATAATACGATGATACAGGTT+TGG | + | chr5.1:22019459-22019478 | None:intergenic | 30.0% | |
| ATCGACTAGAGAGTAATAAA+TGG | + | chr5.1:22018643-22018662 | None:intergenic | 30.0% | |
| CAGCATAAATTCGAAATAAG+TGG | + | chr5.1:22019969-22019988 | None:intergenic | 30.0% | |
| CTTACAGCACTATATATCAT+TGG | - | chr5.1:22018540-22018559 | MS.gene046435:CDS | 30.0% | |
| GAAATATGCAGGATTGAATA+TGG | + | chr5.1:22019050-22019069 | None:intergenic | 30.0% | |
| GAGAATATATTCAAACGAAC+AGG | + | chr5.1:22019022-22019041 | None:intergenic | 30.0% | |
| GCAGTATCTCTTATCTATTA+TGG | - | chr5.1:22018517-22018536 | MS.gene046435:CDS | 30.0% | |
| GCATTTATAATGACTAATGC+CGG | + | chr5.1:22018834-22018853 | None:intergenic | 30.0% | |
| GTTGTGGGATATTAGATAAA+AGG | + | chr5.1:22019517-22019536 | None:intergenic | 30.0% | |
| TCAGTAAGAATGTTTGAACT+CGG | + | chr5.1:22020186-22020205 | None:intergenic | 30.0% | |
| TCTTATACTGCCAAGTTATT+TGG | - | chr5.1:22021076-22021095 | MS.gene046435:CDS | 30.0% | |
| TGTATTAATCCCATTAGTCA+TGG | - | chr5.1:22018573-22018592 | MS.gene046435:CDS | 30.0% | |
| TTTCTGCAATTGAAATATGC+AGG | + | chr5.1:22019061-22019080 | None:intergenic | 30.0% | |
| TTTGTAACAGGAGATCTAAA+TGG | + | chr5.1:22018976-22018995 | None:intergenic | 30.0% | |
| ! | AAAACTTGTTTAAACGGTGT+TGG | - | chr5.1:22021205-22021224 | MS.gene046435:CDS | 30.0% |
| ! | AAAATCAAGCTGACAAGTTT+TGG | + | chr5.1:22021289-22021308 | None:intergenic | 30.0% |
| ! | AAACTTTTTGTTACCTGAGT+AGG | + | chr5.1:22019173-22019192 | None:intergenic | 30.0% |
| ! | AAGTTATTTGGTTCCTTATG+CGG | - | chr5.1:22021088-22021107 | MS.gene046435:CDS | 30.0% |
| ! | AGCGAACTTTTATCAATAAG+AGG | - | chr5.1:22019559-22019578 | MS.gene046435:intron | 30.0% |
| ! | CATCACTTCAAGTTAATTCA+AGG | - | chr5.1:22020504-22020523 | MS.gene046435:intron | 30.0% |
| !! | AAGTTCTGAAGTGGAAAATA+GGG | + | chr5.1:22020317-22020336 | None:intergenic | 30.0% |
| !! | ATATCTTAGTTTGTCCCTTA+GGG | - | chr5.1:22019344-22019363 | MS.gene046435:CDS | 30.0% |
| !! | TATATCTTAGTTTGTCCCTT+AGG | - | chr5.1:22019343-22019362 | MS.gene046435:CDS | 30.0% |
| !! | TCTACAATGTTGTTTCTTTC+TGG | - | chr5.1:22018732-22018751 | MS.gene046435:intron | 30.0% |
| AAAAGGATAAACCAGTGACT+CGG | + | chr5.1:22020460-22020479 | None:intergenic | 35.0% | |
| AACCAACAATTATAGCACCT+TGG | + | chr5.1:22019107-22019126 | None:intergenic | 35.0% | |
| AAGATTGAAAACTGACCCTA+AGG | + | chr5.1:22019362-22019381 | None:intergenic | 35.0% | |
| AATAGAACCAGTGCAATTTG+TGG | + | chr5.1:22019735-22019754 | None:intergenic | 35.0% | |
| AATGTTTGAACTCGGTACAT+TGG | + | chr5.1:22020178-22020197 | None:intergenic | 35.0% | |
| ACTATACTGCACTCTTACTT+TGG | - | chr5.1:22018762-22018781 | MS.gene046435:intron | 35.0% | |
| AGATTGAAAACTGACCCTAA+GGG | + | chr5.1:22019361-22019380 | None:intergenic | 35.0% | |
| ATGTTTGAACTCGGTACATT+GGG | + | chr5.1:22020177-22020196 | None:intergenic | 35.0% | |
| ATTCCTTATCCTTTACAGTG+GGG | - | chr5.1:22020288-22020307 | MS.gene046435:CDS | 35.0% | |
| CAATGTATCTTGGGATTTAG+TGG | - | chr5.1:22019135-22019154 | MS.gene046435:intron | 35.0% | |
| CACAATTAACATCACAAAGG+TGG | - | chr5.1:22020640-22020659 | MS.gene046435:intron | 35.0% | |
| CACTAAATCCCAAGATACAT+TGG | + | chr5.1:22019137-22019156 | None:intergenic | 35.0% | |
| CGACATGACTTACTTGTTTA+AGG | + | chr5.1:22021142-22021161 | None:intergenic | 35.0% | |
| CTTAATTCATCAAACACTCG+AGG | - | chr5.1:22018914-22018933 | MS.gene046435:CDS | 35.0% | |
| CTTATCTTAGATCATCTCCT+AGG | - | chr5.1:22019379-22019398 | MS.gene046435:CDS | 35.0% | |
| CTTCAGAACTTCCATAATCA+TGG | - | chr5.1:22020326-22020345 | MS.gene046435:intron | 35.0% | |
| CTTCGAGGAATATCTATTTC+TGG | - | chr5.1:22019940-22019959 | MS.gene046435:intron | 35.0% | |
| CTTTACCTACAAATGAGAAC+AGG | + | chr5.1:22020706-22020725 | None:intergenic | 35.0% | |
| GAATTCCTTATCCTTTACAG+TGG | - | chr5.1:22020286-22020305 | MS.gene046435:CDS | 35.0% | |
| GACCATATTGTAAAGTCGAT+AGG | + | chr5.1:22020959-22020978 | None:intergenic | 35.0% | |
| GCACACAATTAACATCACAA+AGG | - | chr5.1:22020637-22020656 | MS.gene046435:intron | 35.0% | |
| GCATAAGGAACCAAATAACT+TGG | + | chr5.1:22021089-22021108 | None:intergenic | 35.0% | |
| TACGTTATTCTGATGACAGA+AGG | - | chr5.1:22018692-22018711 | MS.gene046435:intron | 35.0% | |
| TAGGTAAAGTAACCAACACT+TGG | - | chr5.1:22020717-22020736 | MS.gene046435:intron | 35.0% | |
| TCTTATGTCCATGAATATGG+TGG | - | chr5.1:22021320-22021339 | MS.gene046435:intron | 35.0% | |
| TGACACTATGACCATGATTA+TGG | + | chr5.1:22020340-22020359 | None:intergenic | 35.0% | |
| TGCTATACTGTGTTTCATGT+GGG | - | chr5.1:22020914-22020933 | MS.gene046435:intron | 35.0% | |
| TGCTCTTATGTCCATGAATA+TGG | - | chr5.1:22021317-22021336 | MS.gene046435:intron | 35.0% | |
| ! | TTACTTGTTTAAGGCCTGAA+TGG | + | chr5.1:22021133-22021152 | None:intergenic | 35.0% |
| !! | AAGACATTTTGGTGAACACA+AGG | + | chr5.1:22019209-22019228 | None:intergenic | 35.0% |
| !! | ACTGGTTCTATTATTCACTC+TGG | - | chr5.1:22019743-22019762 | MS.gene046435:CDS | 35.0% |
| !! | ATATACCATGAAGCATTGCA+GGG | - | chr5.1:22020224-22020243 | MS.gene046435:CDS | 35.0% |
| !! | ATTGCTTTTGCTGAAGTTGT+GGG | + | chr5.1:22019532-22019551 | None:intergenic | 35.0% |
| !! | GAAGTTCTGAAGTGGAAAAT+AGG | + | chr5.1:22020318-22020337 | None:intergenic | 35.0% |
| !! | TAGTATATTGGCTGGTCTTT+GGG | - | chr5.1:22020577-22020596 | MS.gene046435:intron | 35.0% |
| !! | TGATTATGGAAGTTCTGAAG+TGG | + | chr5.1:22020326-22020345 | None:intergenic | 35.0% |
| !!! | ATGTTTTTGAAGCATCTTCG+AGG | - | chr5.1:22019925-22019944 | MS.gene046435:intron | 35.0% |
| AATCATGGTCATAGTGTCAC+TGG | - | chr5.1:22020341-22020360 | MS.gene046435:intron | 40.0% | |
| ATAACTGAAGAACCCTGCAT+TGG | + | chr5.1:22019783-22019802 | None:intergenic | 40.0% | |
| ATAAGTTCCGACCTGCAAAA+AGG | + | chr5.1:22020477-22020496 | None:intergenic | 40.0% | |
| ATACCCCACTGTAAAGGATA+AGG | + | chr5.1:22020294-22020313 | None:intergenic | 40.0% | |
| ATGACTGGTACCATGACTAA+TGG | + | chr5.1:22018586-22018605 | None:intergenic | 40.0% | |
| ATTAGTCATGGTACCAGTCA+TGG | - | chr5.1:22018585-22018604 | MS.gene046435:CDS | 40.0% | |
| CAAGTTATTGTTGCGCTCAA+CGG | + | chr5.1:22020099-22020118 | None:intergenic | 40.0% | |
| CAGCACTATATATCATTGGC+TGG | - | chr5.1:22018544-22018563 | MS.gene046435:CDS | 40.0% | |
| CAGTGTTACCACCATATTCA+TGG | + | chr5.1:22021331-22021350 | None:intergenic | 40.0% | |
| CGAATATTCAGATTGCAGTG+AGG | + | chr5.1:22021448-22021467 | None:intergenic | 40.0% | |
| CTCGTTTGTGTATTTAGCAC+CGG | - | chr5.1:22018812-22018831 | MS.gene046435:CDS | 40.0% | |
| CTGCTATACTGTGTTTCATG+TGG | - | chr5.1:22020913-22020932 | MS.gene046435:intron | 40.0% | |
| GAATATGGTGGTAACACTGT+TGG | - | chr5.1:22021332-22021351 | MS.gene046435:intron | 40.0% | |
| GGAGGGTTTCTGTAGTATAT+TGG | - | chr5.1:22020565-22020584 | MS.gene046435:intron | 40.0% | |
| GGTTTAGCGTTCTTCAGTTA+TGG | - | chr5.1:22019672-22019691 | MS.gene046435:CDS | 40.0% | |
| GGTTTCTGTAGTATATTGGC+TGG | - | chr5.1:22020569-22020588 | MS.gene046435:intron | 40.0% | |
| TAGGTTAATCAACCCTGTTG+TGG | - | chr5.1:22019626-22019645 | MS.gene046435:CDS | 40.0% | |
| TGACTGGTACCATGACTAAT+GGG | + | chr5.1:22018585-22018604 | None:intergenic | 40.0% | |
| TGGTGAACACAAGGAAGATA+TGG | + | chr5.1:22019200-22019219 | None:intergenic | 40.0% | |
| TTAGTCATGGTACCAGTCAT+GGG | - | chr5.1:22018586-22018605 | MS.gene046435:CDS | 40.0% | |
| TTCAGGAACATGACAATCGT+CGG | - | chr5.1:22020990-22021009 | MS.gene046435:intron | 40.0% | |
| TTGGTCCTGTTCTCATTTGT+AGG | - | chr5.1:22020698-22020717 | MS.gene046435:intron | 40.0% | |
| ! | AAAGCAAGTATCGCATTCAG+TGG | - | chr5.1:22020422-22020441 | MS.gene046435:intron | 40.0% |
| ! | AAGAACGAGGAGTGTATACA+TGG | - | chr5.1:22021394-22021413 | MS.gene046435:intron | 40.0% |
| ! | ACTGGTTGCTTCTGTTGATT+CGG | - | chr5.1:22020359-22020378 | MS.gene046435:intron | 40.0% |
| ! | AGTTATGGTTTTCCACAAGC+TGG | - | chr5.1:22019687-22019706 | MS.gene046435:CDS | 40.0% |
| ! | CTCCAAGGTGCTATAATTGT+TGG | - | chr5.1:22019102-22019121 | MS.gene046435:intron | 40.0% |
| ! | GGTTTATCCTTTTTGCAGGT+CGG | - | chr5.1:22020467-22020486 | MS.gene046435:intron | 40.0% |
| ! | TGTTTAAGGCCTGAATGGAA+TGG | + | chr5.1:22021128-22021147 | None:intergenic | 40.0% |
| ! | TTGCATCCCTTTTAACAGCT+GGG | - | chr5.1:22020124-22020143 | MS.gene046435:intron | 40.0% |
| ! | TTTGCATCCCTTTTAACAGC+TGG | - | chr5.1:22020123-22020142 | MS.gene046435:intron | 40.0% |
| !! | AGTATATTGGCTGGTCTTTG+GGG | - | chr5.1:22020578-22020597 | MS.gene046435:intron | 40.0% |
| !! | CATATACCATGAAGCATTGC+AGG | - | chr5.1:22020223-22020242 | MS.gene046435:CDS | 40.0% |
| !! | CATTGCTTTTGCTGAAGTTG+TGG | + | chr5.1:22019533-22019552 | None:intergenic | 40.0% |
| !! | GGCCTATCGACTTTACAATA+TGG | - | chr5.1:22020954-22020973 | MS.gene046435:intron | 40.0% |
| !! | GTAGTATATTGGCTGGTCTT+TGG | - | chr5.1:22020576-22020595 | MS.gene046435:intron | 40.0% |
| !!! | CAACACCACGCAAGTTTTTT+TGG | + | chr5.1:22021474-22021493 | None:intergenic | 40.0% |
| !!! | CACTGGTTTATCCTTTTTGC+AGG | - | chr5.1:22020463-22020482 | MS.gene046435:intron | 40.0% |
| AAACCAACAGCAGCAACTGT+TGG | + | chr5.1:22019657-22019676 | None:intergenic | 45.0% | |
| AACCCTCCAATGCAATTCCT+CGG | + | chr5.1:22020553-22020572 | None:intergenic | 45.0% | |
| ACATCACAAAGGTGGCAAGT+CGG | - | chr5.1:22020648-22020667 | MS.gene046435:intron | 45.0% | |
| ACTCGACTTCCTTTAGTGCA+AGG | - | chr5.1:22018786-22018805 | MS.gene046435:intron | 45.0% | |
| AGTCATGCAGTACCAATGCA+GGG | - | chr5.1:22019768-22019787 | MS.gene046435:CDS | 45.0% | |
| ATACACCCCCAGCTGTTAAA+AGG | + | chr5.1:22020134-22020153 | None:intergenic | 45.0% | |
| ATAGGGATACCCCACTGTAA+AGG | + | chr5.1:22020300-22020319 | None:intergenic | 45.0% | |
| ATGCATTGTCTACTGCTGCA+TGG | - | chr5.1:22020259-22020278 | MS.gene046435:CDS | 45.0% | |
| CACATAATGAGGGAACTCCA+AGG | - | chr5.1:22019087-22019106 | MS.gene046435:intron | 45.0% | |
| CACTGTTCCACAAATTGCAC+TGG | - | chr5.1:22019725-22019744 | MS.gene046435:CDS | 45.0% | |
| CGTTGAGCGCAACAATAACT+TGG | - | chr5.1:22020097-22020116 | MS.gene046435:intron | 45.0% | |
| CTCGACTTCCTTTAGTGCAA+GGG | - | chr5.1:22018787-22018806 | MS.gene046435:intron | 45.0% | |
| GATTGTCATGTTCCTGAAGC+TGG | + | chr5.1:22020988-22021007 | None:intergenic | 45.0% | |
| GCTTCATGTCTATCCTACTC+AGG | - | chr5.1:22019157-22019176 | MS.gene046435:intron | 45.0% | |
| GGCAGTATAAGACTTGACTC+AGG | + | chr5.1:22021068-22021087 | None:intergenic | 45.0% | |
| GTATAAGACTTGACTCAGGC+TGG | + | chr5.1:22021064-22021083 | None:intergenic | 45.0% | |
| TACACCCCCAGCTGTTAAAA+GGG | + | chr5.1:22020133-22020152 | None:intergenic | 45.0% | |
| TATGGTGGTAACACTGTTGG+TGG | - | chr5.1:22021335-22021354 | MS.gene046435:intron | 45.0% | |
| TCAAGTGGACCATTCCATTC+AGG | - | chr5.1:22021116-22021135 | MS.gene046435:CDS | 45.0% | |
| TCCAAGCAAATACCAGCTTG+TGG | + | chr5.1:22019702-22019721 | None:intergenic | 45.0% | |
| TCCACAAGCTGGTATTTGCT+TGG | - | chr5.1:22019698-22019717 | MS.gene046435:CDS | 45.0% | |
| TGCAGCAGTAGACAATGCAT+CGG | + | chr5.1:22020259-22020278 | None:intergenic | 45.0% | |
| TGCATTGTCTACTGCTGCAT+GGG | - | chr5.1:22020260-22020279 | MS.gene046435:CDS | 45.0% | |
| TTTCATGTGGGCTCTTACTG+TGG | - | chr5.1:22020926-22020945 | MS.gene046435:intron | 45.0% | |
| ! | CCTCGTTCTTGTTTACTTCC+CGG | + | chr5.1:22021384-22021403 | None:intergenic | 45.0% |
| ! | CTCGTTCTTGTTTACTTCCC+GGG | + | chr5.1:22021383-22021402 | None:intergenic | 45.0% |
| ! | GGAACTTGGAGCAGTTTTCT+TGG | - | chr5.1:22020679-22020698 | MS.gene046435:intron | 45.0% |
| ! | TGCATCCCTTTTAACAGCTG+GGG | - | chr5.1:22020125-22020144 | MS.gene046435:intron | 45.0% |
| !! | ACTGTTGGTGGCATTTCTAC+TGG | - | chr5.1:22021347-22021366 | MS.gene046435:CDS | 45.0% |
| !!! | ATAATATAATTTTGTAATTA+TGG | + | chr5.1:22020753-22020772 | None:intergenic | 5.0% |
| AACGAGCTCCCTTGCACTAA+AGG | + | chr5.1:22018798-22018817 | None:intergenic | 50.0% | |
| AATTCAAGGCCTCCAACTCC+AGG | - | chr5.1:22020518-22020537 | MS.gene046435:intron | 50.0% | |
| ACACAGTATAGCAGCAGCCA+AGG | + | chr5.1:22020907-22020926 | None:intergenic | 50.0% | |
| ACATCTGTTCCACCCATGAC+TGG | + | chr5.1:22018601-22018620 | None:intergenic | 50.0% | |
| AGCCGAGGAATTGCATTGGA+GGG | - | chr5.1:22020548-22020567 | MS.gene046435:intron | 50.0% | |
| ATCAGCCCTGCAATGCTTCA+TGG | + | chr5.1:22020232-22020251 | None:intergenic | 50.0% | |
| ATGGTCAATCAGCCAGCTTC+AGG | - | chr5.1:22020973-22020992 | MS.gene046435:intron | 50.0% | |
| CCGGGAAGTAAACAAGAACG+AGG | - | chr5.1:22021381-22021400 | MS.gene046435:CDS | 50.0% | |
| CGCTGCCAAAAAAACTTGCG+TGG | - | chr5.1:22021466-22021485 | MS.gene046435:intron | 50.0% | |
| GAGTCATGCAGTACCAATGC+AGG | - | chr5.1:22019767-22019786 | MS.gene046435:CDS | 50.0% | |
| GGACTTTGGTCACCAAGTGT+TGG | + | chr5.1:22020732-22020751 | None:intergenic | 50.0% | |
| GTATCAAGACTCCGAGTCAC+TGG | - | chr5.1:22020446-22020465 | MS.gene046435:intron | 50.0% | |
| TCTACTGGACAACACTGTCC+CGG | - | chr5.1:22021362-22021381 | MS.gene046435:CDS | 50.0% | |
| TCTCCTTGCTTCCATTCCAC+AGG | - | chr5.1:22020881-22020900 | MS.gene046435:intron | 50.0% | |
| TGGGCTCTTACTGTGGCATT+GGG | - | chr5.1:22020933-22020952 | MS.gene046435:intron | 50.0% | |
| TGTGAGCCGAGGAATTGCAT+TGG | - | chr5.1:22020544-22020563 | MS.gene046435:intron | 50.0% | |
| ! | AGTCGGAGAGTAGTGGAACT+TGG | - | chr5.1:22020665-22020684 | MS.gene046435:intron | 50.0% |
| ! | GCATCCCTTTTAACAGCTGG+GGG | - | chr5.1:22020126-22020145 | MS.gene046435:intron | 50.0% |
| ! | GTCGGCGTTGCATTGTTTCT+TGG | - | chr5.1:22021008-22021027 | MS.gene046435:intron | 50.0% |
| !! | AACTTGCGTGGTGTTGCTGT+TGG | - | chr5.1:22021478-22021497 | MS.gene046435:intron | 50.0% |
| ACTGTTGGCGCAACCACAAC+AGG | + | chr5.1:22019642-22019661 | None:intergenic | 55.0% | |
| AGGCCTGTGGAATGGAAGCA+AGG | + | chr5.1:22020887-22020906 | None:intergenic | 55.0% | |
| ATTCCTCGGCTCACAACTCC+TGG | + | chr5.1:22020539-22020558 | None:intergenic | 55.0% | |
| CCACTTGATGCTGCCGCATA+AGG | + | chr5.1:22021104-22021123 | None:intergenic | 55.0% | |
| CCTTATGCGGCAGCATCAAG+TGG | - | chr5.1:22021101-22021120 | MS.gene046435:CDS | 55.0% | |
| CTACTGGACAACACTGTCCC+GGG | - | chr5.1:22021363-22021382 | MS.gene046435:CDS | 55.0% | |
| CTCACAACTCCTGGAGTTGG+AGG | + | chr5.1:22020530-22020549 | None:intergenic | 55.0% | |
| CTGTTGGCGCAACCACAACA+GGG | + | chr5.1:22019641-22019660 | None:intergenic | 55.0% | |
| GAGAGCTGAAGACATTGCCG+CGG | - | chr5.1:22021419-22021438 | MS.gene046435:intron | 55.0% | |
| GAGCCGAGGAATTGCATTGG+AGG | - | chr5.1:22020547-22020566 | MS.gene046435:intron | 55.0% | |
| GTCATGGTACCAGTCATGGG+TGG | - | chr5.1:22018589-22018608 | MS.gene046435:CDS | 55.0% | |
| GTGGGCTCTTACTGTGGCAT+TGG | - | chr5.1:22020932-22020951 | MS.gene046435:intron | 55.0% | |
| TGCTTCCATTCCACAGGCCT+TGG | - | chr5.1:22020887-22020906 | MS.gene046435:intron | 55.0% | |
| ! | AGATTGCAGTGAGGCATCCG+CGG | + | chr5.1:22021439-22021458 | None:intergenic | 55.0% |
| !! | GGTCTTTGGGGTTCAGGTAC+TGG | - | chr5.1:22020590-22020609 | MS.gene046435:intron | 55.0% |
| !! | TTGGCTGGTCTTTGGGGTTC+AGG | - | chr5.1:22020584-22020603 | MS.gene046435:intron | 55.0% |
| ACTCCAGGAGTTGTGAGCCG+AGG | - | chr5.1:22020533-22020552 | MS.gene046435:intron | 60.0% | |
| AGCAGCCAAGGCCTGTGGAA+TGG | + | chr5.1:22020895-22020914 | None:intergenic | 60.0% | |
| ATAGCAGCAGCCAAGGCCTG+TGG | + | chr5.1:22020900-22020919 | None:intergenic | 60.0% | |
| CGGCTCACAACTCCTGGAGT+TGG | + | chr5.1:22020533-22020552 | None:intergenic | 60.0% | |
| GCGCCAACAGTTGCTGCTGT+TGG | - | chr5.1:22019651-22019670 | MS.gene046435:CDS | 60.0% | |
| GGTGGCAAGTCGGAGAGTAG+TGG | - | chr5.1:22020658-22020677 | MS.gene046435:intron | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5.1 | gene | 22018446 | 22021509 | 22018446 | ID=MS.gene046435 |
| chr5.1 | mRNA | 22018446 | 22021509 | 22018446 | ID=MS.gene046435.t1;Parent=MS.gene046435 |
| chr5.1 | exon | 22021495 | 22021509 | 22021495 | ID=MS.gene046435.t1.exon1;Parent=MS.gene046435.t1 |
| chr5.1 | CDS | 22021495 | 22021509 | 22021495 | ID=cds.MS.gene046435.t1;Parent=MS.gene046435.t1 |
| chr5.1 | exon | 22021337 | 22021408 | 22021337 | ID=MS.gene046435.t1.exon2;Parent=MS.gene046435.t1 |
| chr5.1 | CDS | 22021337 | 22021408 | 22021337 | ID=cds.MS.gene046435.t1;Parent=MS.gene046435.t1 |
| chr5.1 | exon | 22021074 | 22021244 | 22021074 | ID=MS.gene046435.t1.exon3;Parent=MS.gene046435.t1 |
| chr5.1 | CDS | 22021074 | 22021244 | 22021074 | ID=cds.MS.gene046435.t1;Parent=MS.gene046435.t1 |
| chr5.1 | exon | 22020777 | 22020877 | 22020777 | ID=MS.gene046435.t1.exon4;Parent=MS.gene046435.t1 |
| chr5.1 | CDS | 22020777 | 22020877 | 22020777 | ID=cds.MS.gene046435.t1;Parent=MS.gene046435.t1 |
| chr5.1 | exon | 22020191 | 22020326 | 22020191 | ID=MS.gene046435.t1.exon5;Parent=MS.gene046435.t1 |
| chr5.1 | CDS | 22020191 | 22020326 | 22020191 | ID=cds.MS.gene046435.t1;Parent=MS.gene046435.t1 |
| chr5.1 | exon | 22019968 | 22020018 | 22019968 | ID=MS.gene046435.t1.exon6;Parent=MS.gene046435.t1 |
| chr5.1 | CDS | 22019968 | 22020018 | 22019968 | ID=cds.MS.gene046435.t1;Parent=MS.gene046435.t1 |
| chr5.1 | exon | 22019575 | 22019862 | 22019575 | ID=MS.gene046435.t1.exon7;Parent=MS.gene046435.t1 |
| chr5.1 | CDS | 22019575 | 22019862 | 22019575 | ID=cds.MS.gene046435.t1;Parent=MS.gene046435.t1 |
| chr5.1 | exon | 22019236 | 22019470 | 22019236 | ID=MS.gene046435.t1.exon8;Parent=MS.gene046435.t1 |
| chr5.1 | CDS | 22019236 | 22019470 | 22019236 | ID=cds.MS.gene046435.t1;Parent=MS.gene046435.t1 |
| chr5.1 | exon | 22018807 | 22019087 | 22018807 | ID=MS.gene046435.t1.exon9;Parent=MS.gene046435.t1 |
| chr5.1 | CDS | 22018807 | 22019087 | 22018807 | ID=cds.MS.gene046435.t1;Parent=MS.gene046435.t1 |
| chr5.1 | exon | 22018446 | 22018655 | 22018446 | ID=MS.gene046435.t1.exon10;Parent=MS.gene046435.t1 |
| chr5.1 | CDS | 22018446 | 22018655 | 22018446 | ID=cds.MS.gene046435.t1;Parent=MS.gene046435.t1 |
| Gene Sequence |
| Protein sequence |
