Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene069113.t1 | XP_003613041.2 | 98.4 | 499 | 8 | 0 | 1 | 499 | 203 | 701 | 1.60E-273 | 951.4 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene069113.t1 | Q6SZ87 | 74.0 | 492 | 128 | 0 | 1 | 492 | 210 | 701 | 4.3e-214 | 745.3 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene069113.t1 | G7JWD8 | 98.4 | 499 | 8 | 0 | 1 | 499 | 203 | 701 | 1.2e-273 | 951.4 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene069113 | MS.gene064832 | PPI |
| MS.gene069113 | MS.gene03780 | PPI |
| MS.gene069113 | MS.gene69330 | PPI |
| MS.gene073086 | MS.gene069113 | PPI |
| MS.gene35372 | MS.gene069113 | PPI |
| MS.gene069113 | MS.gene89983 | PPI |
| MS.gene069113 | MS.gene52774 | PPI |
| MS.gene90652 | MS.gene069113 | PPI |
| MS.gene78124 | MS.gene069113 | PPI |
| MS.gene069113 | MS.gene43080 | PPI |
| MS.gene069113 | MS.gene014350 | PPI |
| MS.gene07703 | MS.gene069113 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene069113.t1 | MTR_5g032020 | 98.397 | 499 | 8 | 0 | 1 | 499 | 203 | 701 | 0.0 | 996 |
| MS.gene069113.t1 | MTR_8g068550 | 83.567 | 499 | 82 | 0 | 1 | 499 | 261 | 759 | 0.0 | 879 |
| MS.gene069113.t1 | MTR_2g084895 | 56.886 | 501 | 214 | 1 | 1 | 499 | 182 | 682 | 0.0 | 587 |
| MS.gene069113.t1 | MTR_4g055290 | 57.171 | 502 | 206 | 3 | 1 | 499 | 189 | 684 | 0.0 | 576 |
| MS.gene069113.t1 | MTR_2g103510 | 50.699 | 501 | 211 | 3 | 1 | 499 | 129 | 595 | 3.06e-180 | 519 |
| MS.gene069113.t1 | MTR_8g086520 | 36.970 | 495 | 276 | 5 | 1 | 491 | 55 | 517 | 5.29e-107 | 328 |
| MS.gene069113.t1 | MTR_3g080390 | 37.903 | 496 | 271 | 6 | 1 | 491 | 50 | 513 | 6.10e-107 | 328 |
| MS.gene069113.t1 | MTR_3g078270 | 35.614 | 497 | 282 | 4 | 1 | 491 | 61 | 525 | 7.32e-103 | 318 |
| MS.gene069113.t1 | MTR_4g106750 | 34.809 | 497 | 286 | 4 | 1 | 491 | 12 | 476 | 2.42e-102 | 315 |
| MS.gene069113.t1 | MTR_4g106750 | 34.809 | 497 | 286 | 4 | 1 | 491 | 61 | 525 | 8.55e-102 | 315 |
| MS.gene069113.t1 | MTR_8g063220 | 35.815 | 497 | 281 | 5 | 1 | 491 | 62 | 526 | 1.93e-101 | 315 |
| MS.gene069113.t1 | MTR_2g016460 | 34.747 | 495 | 287 | 4 | 1 | 491 | 55 | 517 | 2.15e-101 | 314 |
| MS.gene069113.t1 | MTR_8g086520 | 39.702 | 403 | 223 | 3 | 1 | 401 | 55 | 439 | 3.53e-97 | 301 |
| MS.gene069113.t1 | MTR_5g035180 | 34.137 | 498 | 289 | 4 | 1 | 491 | 66 | 531 | 4.97e-96 | 301 |
| MS.gene069113.t1 | MTR_3g103230 | 32.596 | 497 | 294 | 6 | 1 | 491 | 86 | 547 | 1.81e-89 | 284 |
| MS.gene069113.t1 | MTR_8g086520 | 36.449 | 428 | 238 | 4 | 66 | 491 | 6 | 401 | 3.10e-88 | 276 |
| MS.gene069113.t1 | MTR_1g021120 | 32.998 | 497 | 293 | 5 | 1 | 491 | 78 | 540 | 4.48e-86 | 275 |
| MS.gene069113.t1 | MTR_1g106085 | 32.998 | 497 | 293 | 7 | 1 | 491 | 58 | 520 | 3.55e-85 | 272 |
| MS.gene069113.t1 | MTR_8g086520 | 38.017 | 363 | 205 | 3 | 1 | 361 | 55 | 399 | 1.41e-81 | 259 |
| MS.gene069113.t1 | MTR_5g022110 | 32.797 | 497 | 293 | 5 | 1 | 491 | 79 | 540 | 1.60e-80 | 261 |
| MS.gene069113.t1 | MTR_4g106750 | 32.658 | 395 | 230 | 3 | 101 | 491 | 11 | 373 | 4.90e-72 | 233 |
| MS.gene069113.t1 | MTR_8g086535 | 42.697 | 89 | 51 | 0 | 273 | 361 | 27 | 115 | 1.03e-15 | 73.9 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene069113.t1 | AT4G38050 | 73.200 | 500 | 129 | 1 | 1 | 495 | 210 | 709 | 0.0 | 739 |
| MS.gene069113.t1 | AT2G27810 | 59.562 | 502 | 200 | 2 | 1 | 499 | 204 | 705 | 0.0 | 572 |
| MS.gene069113.t1 | AT2G27810 | 57.034 | 526 | 199 | 3 | 1 | 499 | 204 | 729 | 0.0 | 562 |
| MS.gene069113.t1 | AT2G27810 | 63.472 | 386 | 140 | 1 | 1 | 385 | 204 | 589 | 3.39e-156 | 457 |
| MS.gene069113.t1 | AT2G27810 | 64.012 | 339 | 121 | 1 | 1 | 338 | 204 | 542 | 5.14e-134 | 399 |
| MS.gene069113.t1 | AT1G60030 | 38.431 | 497 | 268 | 4 | 1 | 491 | 67 | 531 | 1.77e-114 | 348 |
| MS.gene069113.t1 | AT2G05760 | 38.911 | 496 | 266 | 5 | 1 | 491 | 50 | 513 | 4.48e-108 | 331 |
| MS.gene069113.t1 | AT2G34190 | 35.960 | 495 | 281 | 5 | 1 | 491 | 55 | 517 | 6.63e-105 | 323 |
| MS.gene069113.t1 | AT5G62890 | 35.815 | 497 | 281 | 4 | 1 | 491 | 61 | 525 | 2.38e-103 | 320 |
| MS.gene069113.t1 | AT5G62890 | 35.815 | 497 | 281 | 4 | 1 | 491 | 61 | 525 | 2.38e-103 | 320 |
| MS.gene069113.t1 | AT5G62890 | 35.815 | 497 | 281 | 4 | 1 | 491 | 61 | 525 | 2.38e-103 | 320 |
| MS.gene069113.t1 | AT5G49990 | 35.815 | 497 | 281 | 6 | 1 | 491 | 57 | 521 | 9.44e-101 | 313 |
| MS.gene069113.t1 | AT5G49990 | 35.815 | 497 | 281 | 6 | 1 | 491 | 57 | 521 | 9.44e-101 | 313 |
| MS.gene069113.t1 | AT5G49990 | 35.815 | 497 | 281 | 6 | 1 | 491 | 57 | 521 | 9.44e-101 | 313 |
| MS.gene069113.t1 | AT5G49990 | 35.815 | 497 | 281 | 6 | 1 | 491 | 57 | 521 | 9.44e-101 | 313 |
| MS.gene069113.t1 | AT1G10540 | 34.791 | 503 | 283 | 8 | 1 | 492 | 65 | 533 | 2.16e-97 | 304 |
| MS.gene069113.t1 | AT1G49960 | 36.419 | 497 | 278 | 6 | 1 | 491 | 55 | 519 | 1.71e-94 | 296 |
| MS.gene069113.t1 | AT5G62890 | 36.891 | 431 | 238 | 3 | 1 | 429 | 61 | 459 | 1.91e-92 | 290 |
| MS.gene069113.t1 | AT2G26510 | 34.739 | 498 | 284 | 6 | 1 | 491 | 79 | 542 | 1.20e-84 | 271 |
| MS.gene069113.t1 | AT1G65550 | 31.746 | 504 | 297 | 7 | 1 | 491 | 65 | 534 | 1.13e-80 | 261 |
| MS.gene069113.t1 | AT1G10540 | 35.174 | 344 | 196 | 5 | 1 | 337 | 65 | 388 | 9.52e-67 | 220 |
| MS.gene069113.t1 | AT2G26510 | 37.243 | 341 | 190 | 4 | 1 | 337 | 79 | 399 | 1.87e-59 | 201 |
| MS.gene069113.t1 | AT2G26510 | 37.353 | 340 | 188 | 5 | 1 | 335 | 79 | 398 | 5.86e-56 | 193 |
| MS.gene069113.t1 | AT5G25420 | 28.784 | 403 | 199 | 6 | 1 | 401 | 77 | 393 | 1.88e-48 | 172 |
Find 142 sgRNAs with CRISPR-Local
Find 212 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CGACATGACTTACTTGTTTA+AGG | 0.077021 | 5.4:+22183275 | None:intergenic |
| TAGTATATTGGCTGGTCTTT+GGG | 0.186238 | 5.4:-22183843 | MS.gene069113:CDS |
| TCTACAATGTTGTTTCTTTC+CGG | 0.199188 | 5.4:-22185749 | MS.gene069113:CDS |
| GTAGTATATTGGCTGGTCTT+TGG | 0.248801 | 5.4:-22183844 | MS.gene069113:CDS |
| GAAGTCCTGAAGTGGAAAAT+AGG | 0.249412 | 5.4:+22184107 | None:intergenic |
| TGCTTCCATTCCACAGGCCT+TGG | 0.253689 | 5.4:-22183527 | MS.gene069113:CDS |
| TTGGCTGGTCTTTGGGGTTC+AGG | 0.262793 | 5.4:-22183836 | MS.gene069113:CDS |
| CAACACCATGCAAGTTTCTT+TGG | 0.280482 | 5.4:+22182943 | None:intergenic |
| CCTCGTTCTTGTTTACTTCC+CGG | 0.284283 | 5.4:+22183033 | None:intergenic |
| TTCAATATTCCAATGTATCT+TGG | 0.297916 | 5.4:-22185363 | MS.gene069113:CDS |
| ACCGTTGGCGCAACCACAAC+AGG | 0.317314 | 5.4:+22184784 | None:intergenic |
| TGACACTATGACCATGATTA+TGG | 0.319148 | 5.4:+22184085 | None:intergenic |
| CGCATAAGGAACAAGATAAC+TGG | 0.321940 | 5.4:+22183327 | None:intergenic |
| CAATGTATCTTGGGATTTAG+TGG | 0.331523 | 5.4:-22185353 | MS.gene069113:CDS |
| TTGATCCTCTTCTCATTTGT+AGG | 0.332106 | 5.4:-22183722 | MS.gene069113:intron |
| GTGGGCTCTTACCGTGGCAT+TGG | 0.337955 | 5.4:-22183482 | MS.gene069113:CDS |
| ACTATACTGCACTCTTACTT+TGG | 0.354542 | 5.4:-22185719 | MS.gene069113:CDS |
| GGTCTTTGGGGTTCAGGTAC+CGG | 0.358878 | 5.4:-22183830 | MS.gene069113:CDS |
| GGAGGGTTTCTGTAGTATAT+TGG | 0.361128 | 5.4:-22183855 | MS.gene069113:CDS |
| ATCAGCCCTGCAATGCTTCA+TGG | 0.374512 | 5.4:+22184193 | None:intergenic |
| CATATACCATGAAGCATTGC+AGG | 0.376910 | 5.4:-22184199 | MS.gene069113:CDS |
| TCAATATTCCAATGTATCTT+GGG | 0.377573 | 5.4:-22185362 | MS.gene069113:CDS |
| CAGTGTAACCACCATGTTCA+TGG | 0.386977 | 5.4:+22183086 | None:intergenic |
| TCAAGTGGGCCATTCCATTC+AGG | 0.393498 | 5.4:-22183298 | MS.gene069113:CDS |
| CTTCAAGGTGCTATAATTGT+TGG | 0.396001 | 5.4:-22185386 | MS.gene069113:CDS |
| AGGCTGGTATTGTTGAAAAT+AGG | 0.398406 | 5.4:+22183369 | None:intergenic |
| TGGGCTCTTACCGTGGCATT+GGG | 0.399078 | 5.4:-22183481 | MS.gene069113:CDS |
| ATTCCTCGGCTCACAACTCC+TGG | 0.404762 | 5.4:+22183884 | None:intergenic |
| TTACTTGTTTAAGGCCTGAA+TGG | 0.405824 | 5.4:+22183284 | None:intergenic |
| ACTGTTGGTGGCATTTCTAC+TGG | 0.415195 | 5.4:-22183067 | MS.gene069113:CDS |
| CGTCACTTCAAGTTAATTCA+AGG | 0.416440 | 5.4:-22183916 | MS.gene069113:CDS |
| CGTTGAGCGCAACAATAACT+TGG | 0.418430 | 5.4:-22184325 | MS.gene069113:CDS |
| TTCTGTCAAAGTCGTTGAAC+CGG | 0.418532 | 5.4:+22183811 | None:intergenic |
| CCCTGTTGTGGTTGCGCCAA+CGG | 0.418704 | 5.4:-22184785 | MS.gene069113:CDS |
| ATGTTTGAACTCGGTACATT+GGG | 0.420675 | 5.4:+22184248 | None:intergenic |
| CCACTTGACGCTGCCGCATA+AGG | 0.423290 | 5.4:+22183313 | None:intergenic |
| ACCATGCAAGTTTCTTTGGC+AGG | 0.423585 | 5.4:+22182947 | None:intergenic |
| CACTGTTCCACAAATTGCAT+TGG | 0.423678 | 5.4:-22184698 | MS.gene069113:CDS |
| AAACAACATTGTAGAAATTA+CGG | 0.423737 | 5.4:+22185757 | None:intergenic |
| ATGGTCAATCAGCTAGCTTC+AGG | 0.426770 | 5.4:-22183441 | MS.gene069113:CDS |
| CCCTTGCACTAAAGGAAGTC+GGG | 0.431146 | 5.4:+22185694 | None:intergenic |
| GGTTTAGCGTTCTTCAGTTA+CGG | 0.431955 | 5.4:-22184751 | MS.gene069113:CDS |
| TTATAAATGCTCAAGAATAT+CGG | 0.433551 | 5.4:-22185637 | MS.gene069113:CDS |
| AAGTCCTGAAGTGGAAAATA+GGG | 0.433703 | 5.4:+22184108 | None:intergenic |
| CCCACAAGCTGGTATTTGCT+TGG | 0.438042 | 5.4:-22184725 | MS.gene069113:CDS |
| AATAGAACCAATGCAATTTG+TGG | 0.438702 | 5.4:+22184691 | None:intergenic |
| ACTGGTTGCTTCTGTTGATT+CGG | 0.443347 | 5.4:-22184063 | MS.gene069113:intron |
| AACGAGCTCCCTTGCACTAA+AGG | 0.444458 | 5.4:+22185686 | None:intergenic |
| CTCGTTCTTGTTTACTTCCC+GGG | 0.450845 | 5.4:+22183034 | None:intergenic |
| GTCGGCGTTGCATTGTTCCT+TGG | 0.453402 | 5.4:-22183406 | MS.gene069113:CDS |
| TCTCCTTGCTTCCATTCCAC+AGG | 0.455637 | 5.4:-22183533 | MS.gene069113:CDS |
| CAGCATAAATTCGAAATAAG+TGG | 0.456937 | 5.4:+22184456 | None:intergenic |
| GCGCCAACGGTTGCTGCTGT+AGG | 0.457783 | 5.4:-22184772 | MS.gene069113:CDS |
| GGCCTATCGACTTTACAGTA+TGG | 0.462728 | 5.4:-22183460 | MS.gene069113:CDS |
| CTCACAACTCCTGGAGTTGG+AGG | 0.475666 | 5.4:+22183893 | None:intergenic |
| CCAAGCAAATACCAGCTTGT+GGG | 0.476150 | 5.4:+22184725 | None:intergenic |
| ATTAGTCATGGTACCAGTCA+TGG | 0.477474 | 5.4:-22185895 | None:intergenic |
| CTTCGAGGAATATCTATCTC+TGG | 0.481735 | 5.4:-22184482 | MS.gene069113:CDS |
| TTCAGGAACATGACAATTGT+CGG | 0.483776 | 5.4:-22183424 | MS.gene069113:CDS |
| CCTTATGCGGCAGCGTCAAG+TGG | 0.488646 | 5.4:-22183313 | MS.gene069113:CDS |
| AGTAGGAGAGTAGTGGAACT+TGG | 0.490518 | 5.4:-22183755 | MS.gene069113:CDS |
| GGTTTCTGTAGTATATTGGC+TGG | 0.490990 | 5.4:-22183851 | MS.gene069113:CDS |
| AGAAATTTAGACACATAATG+AGG | 0.491899 | 5.4:-22185412 | MS.gene069113:CDS |
| CGGCTCACAACTCCTGGAGT+TGG | 0.492387 | 5.4:+22183890 | None:intergenic |
| AATGTTTGAACTCGGTACAT+TGG | 0.497178 | 5.4:+22184247 | None:intergenic |
| ATACCCCACTGTAAAGGATA+AGG | 0.497905 | 5.4:+22184131 | None:intergenic |
| TGTTTGTTGAAGCATCTTCG+AGG | 0.502276 | 5.4:-22184497 | MS.gene069113:intron |
| AATCATGGTCATAGTGTCAC+TGG | 0.503235 | 5.4:-22184081 | MS.gene069113:CDS |
| CGCTCTTATGTCCATGAACA+TGG | 0.503641 | 5.4:-22183097 | MS.gene069113:CDS |
| ATTGGTTCTATTATTCACTC+TGG | 0.507159 | 5.4:-22184680 | MS.gene069113:intron |
| TGCTATACTGTGTTTCATGT+GGG | 0.512633 | 5.4:-22183500 | MS.gene069113:CDS |
| AATTCAAGGCCTCCAACTCC+AGG | 0.519913 | 5.4:-22183902 | MS.gene069113:CDS |
| ATGCATTGTCTACTGCTGCA+TGG | 0.523315 | 5.4:-22184163 | MS.gene069113:CDS |
| ACATCTGTTCCACCCATGAC+TGG | 0.524518 | 5.4:+22185882 | None:intergenic |
| CTGCTATACTGTGTTTCATG+TGG | 0.524664 | 5.4:-22183501 | MS.gene069113:CDS |
| TGCATTGTCTACTGCTGCAT+GGG | 0.526144 | 5.4:-22184162 | MS.gene069113:CDS |
| CTTCAGGACTTCCATAATCA+TGG | 0.529196 | 5.4:-22184096 | MS.gene069113:CDS |
| AATTCCTTATCCTTTACAGT+GGG | 0.530316 | 5.4:-22184135 | MS.gene069113:CDS |
| CTACTGGACAACACTGTCCC+GGG | 0.530706 | 5.4:-22183051 | MS.gene069113:CDS |
| GCATTTATAATGACTAAAGC+AGG | 0.530879 | 5.4:+22185650 | None:intergenic |
| AGTATATTGGCTGGTCTTTG+GGG | 0.537211 | 5.4:-22183842 | MS.gene069113:CDS |
| TTGTTGAAAATAGGATGGAA+TGG | 0.537365 | 5.4:+22183378 | None:intergenic |
| TCTACTGGACAACACTGTCC+CGG | 0.540937 | 5.4:-22183052 | MS.gene069113:CDS |
| AACCCTCCAATGCAATTCCT+CGG | 0.543888 | 5.4:+22183870 | None:intergenic |
| AGCCGAGGAATTGCATTGGA+GGG | 0.544530 | 5.4:-22183872 | MS.gene069113:CDS |
| CAAGTTATTGTTGCGCTCAA+CGG | 0.544576 | 5.4:+22184326 | None:intergenic |
| CCATGCAAGTTTCTTTGGCA+GGG | 0.544812 | 5.4:+22182948 | None:intergenic |
| TTTCATGTGGGCTCTTACCG+TGG | 0.545169 | 5.4:-22183488 | MS.gene069113:CDS |
| CACATAATGAGGGAACTTCA+AGG | 0.546339 | 5.4:-22185401 | MS.gene069113:CDS |
| ATAGGGATACCCCACTGTAA+AGG | 0.546733 | 5.4:+22184125 | None:intergenic |
| ACCCGACTTCCTTTAGTGCA+AGG | 0.549323 | 5.4:-22185695 | MS.gene069113:CDS |
| TCCCTTGCACTAAAGGAAGT+CGG | 0.553144 | 5.4:+22185693 | None:intergenic |
| CCCGACTTCCTTTAGTGCAA+GGG | 0.555144 | 5.4:-22185694 | MS.gene069113:CDS |
| GTGCAGTATAGTTGTGATGC+CGG | 0.555342 | 5.4:+22185730 | None:intergenic |
| TGTTTAAGGCCTGAATGGAA+TGG | 0.558091 | 5.4:+22183289 | None:intergenic |
| CACTAAATCCCAAGATACAT+TGG | 0.559536 | 5.4:+22185354 | None:intergenic |
| AACTTGCATGGTGTTGCTGT+TGG | 0.563081 | 5.4:-22182936 | MS.gene069113:CDS |
| TCCAAGCAAATACCAGCTTG+TGG | 0.564734 | 5.4:+22184724 | None:intergenic |
| GAGCCGAGGAATTGCATTGG+AGG | 0.566036 | 5.4:-22183873 | MS.gene069113:CDS |
| AGCAGCCAAGGCCTGTGGAA+TGG | 0.570357 | 5.4:+22183522 | None:intergenic |
| AGTTACGGTTTCCCACAAGC+TGG | 0.571863 | 5.4:-22184736 | MS.gene069113:CDS |
| TGTGAGCCGAGGAATTGCAT+TGG | 0.574624 | 5.4:-22183876 | MS.gene069113:CDS |
| CAGTTATCTTGTTCCTTATG+CGG | 0.574780 | 5.4:-22183326 | MS.gene069113:CDS |
| TTAGTCATGGTACCAGTCAT+GGG | 0.575195 | 5.4:-22185894 | None:intergenic |
| ACACAGTATAGCAGCAGCCA+AGG | 0.577141 | 5.4:+22183510 | None:intergenic |
| AGGATGGAATGGACATTCCA+AGG | 0.577433 | 5.4:+22183389 | None:intergenic |
| GCTTGATGTCTATCCTACTC+AGG | 0.579268 | 5.4:-22185331 | MS.gene069113:intron |
| GGTGGCAAGTAGGAGAGTAG+TGG | 0.580576 | 5.4:-22183762 | MS.gene069113:CDS |
| CTTATGCGGCAGCGTCAAGT+GGG | 0.584023 | 5.4:-22183312 | MS.gene069113:CDS |
| AGATTGCAGCGAGGCATCCG+CGG | 0.585119 | 5.4:+22182978 | None:intergenic |
| TGGTATTGTTGAAAATAGGA+TGG | 0.586767 | 5.4:+22183373 | None:intergenic |
| ACATCACAAAGGTGGCAAGT+AGG | 0.589236 | 5.4:-22183772 | MS.gene069113:CDS |
| CTTTACCTACAAATGAGAAG+AGG | 0.593632 | 5.4:+22183717 | None:intergenic |
| GTATAAGACTTGACTCAGGC+TGG | 0.598503 | 5.4:+22183353 | None:intergenic |
| AAACCTACAGCAGCAACCGT+TGG | 0.601364 | 5.4:+22184769 | None:intergenic |
| TAGGTTAATCAACCCTGTTG+TGG | 0.603357 | 5.4:-22184797 | MS.gene069113:CDS |
| TGATTATGGAAGTCCTGAAG+TGG | 0.603711 | 5.4:+22184099 | None:intergenic |
| GAAATTTAGACACATAATGA+GGG | 0.604178 | 5.4:-22185411 | MS.gene069113:CDS |
| CACAATTAACATCACAAAGG+TGG | 0.604324 | 5.4:-22183780 | MS.gene069113:CDS |
| AGGCCTGTGGAATGGAAGCA+AGG | 0.607804 | 5.4:+22183530 | None:intergenic |
| AAGAACGAGGAGTGTATACA+TGG | 0.615795 | 5.4:-22183020 | MS.gene069113:CDS |
| AGTCGATAGGCCCAATGCCA+CGG | 0.617446 | 5.4:+22183471 | None:intergenic |
| GAATTCCTTATCCTTTACAG+TGG | 0.622024 | 5.4:-22184136 | MS.gene069113:CDS |
| CCCTGCCAAAGAAACTTGCA+TGG | 0.625130 | 5.4:-22182948 | MS.gene069113:CDS |
| CATGGTGGTTACACTGTTGG+TGG | 0.626703 | 5.4:-22183079 | MS.gene069113:CDS |
| GAACATGGTGGTTACACTGT+TGG | 0.627072 | 5.4:-22183082 | MS.gene069113:CDS |
| TGCAGCAGTAGACAATGCAT+CGG | 0.629989 | 5.4:+22184166 | None:intergenic |
| GACCATACTGTAAAGTCGAT+AGG | 0.637354 | 5.4:+22183458 | None:intergenic |
| GCATAAGGAACAAGATAACT+GGG | 0.640702 | 5.4:+22183328 | None:intergenic |
| ATAGCAGCAGCCAAGGCCTG+TGG | 0.643514 | 5.4:+22183517 | None:intergenic |
| GGCAGTATAAGACTTGACTC+AGG | 0.653391 | 5.4:+22183349 | None:intergenic |
| TCAGTAAGAATGTTTGAACT+CGG | 0.663142 | 5.4:+22184239 | None:intergenic |
| GTCATGGTACCAGTCATGGG+TGG | 0.663447 | 5.4:-22185891 | MS.gene069113:CDS |
| ATTCCTTATCCTTTACAGTG+GGG | 0.666964 | 5.4:-22184134 | MS.gene069113:CDS |
| ATATACCATGAAGCATTGCA+GGG | 0.667424 | 5.4:-22184198 | MS.gene069113:CDS |
| ACTCCAGGAGTTGTGAGCCG+AGG | 0.668659 | 5.4:-22183887 | MS.gene069113:CDS |
| CCGTTGGCGCAACCACAACA+GGG | 0.681677 | 5.4:+22184785 | None:intergenic |
| CCGGGAAGTAAACAAGAACG+AGG | 0.685706 | 5.4:-22183033 | MS.gene069113:CDS |
| GAGAGCTGAAGACATTGCCG+CGG | 0.710630 | 5.4:-22182995 | MS.gene069113:CDS |
| GCACACAATTAACATCACAA+AGG | 0.716995 | 5.4:-22183783 | MS.gene069113:CDS |
| GGAATATTCAGATTGCAGCG+AGG | 0.745841 | 5.4:+22182969 | None:intergenic |
| TCTTATGTCCATGAACATGG+TGG | 0.757467 | 5.4:-22183094 | MS.gene069113:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TTAATAAAAATAATAATAAT+AGG | + | chr5.4:22183755-22183774 | None:intergenic | 0.0% |
| !! | AAAATAATAATAATAGGAAA+AGG | + | chr5.4:22183749-22183768 | None:intergenic | 10.0% |
| !! | AATTACATTTAAATATTTGC+AGG | - | chr5.4:22184464-22184483 | MS.gene069113:CDS | 15.0% |
| !! | ATAATATAATTCTGCAATTA+TGG | + | chr5.4:22185147-22185166 | None:intergenic | 15.0% |
| !! | TTACAAATCACATTAAAATT+TGG | - | chr5.4:22183322-22183341 | MS.gene069113:CDS | 15.0% |
| !!! | ATCATATTTACATTTTTAGA+TGG | - | chr5.4:22184780-22184799 | MS.gene069113:CDS | 15.0% |
| !! | AAACAACATTGTAGAAATTA+CGG | + | chr5.4:22183061-22183080 | None:intergenic | 20.0% |
| !! | AAATATGCAGGATTTAATAA+GGG | + | chr5.4:22183382-22183401 | None:intergenic | 20.0% |
| !! | AAATATTTGAACTTCAATTC+AGG | + | chr5.4:22185194-22185213 | None:intergenic | 20.0% |
| !! | GGATATAAATAATTAATCCT+AGG | + | chr5.4:22183728-22183747 | None:intergenic | 20.0% |
| !! | GTTCAAATATTTCTTTATAC+AGG | - | chr5.4:22185202-22185221 | MS.gene069113:intron | 20.0% |
| !! | TTATAAATGCTCAAGAATAT+CGG | - | chr5.4:22183178-22183197 | MS.gene069113:intron | 20.0% |
| !!! | ATTGAACTTTTATCAATAAG+AGG | - | chr5.4:22183951-22183970 | MS.gene069113:intron | 20.0% |
| !!! | ATTTTAATGTGATTTGTAAC+AGG | + | chr5.4:22183321-22183340 | None:intergenic | 20.0% |
| !!! | TACTTAAAAACTTGTTTAGA+CGG | - | chr5.4:22185600-22185619 | MS.gene069113:intron | 20.0% |
| !!! | TCATAAGTGTTTGTTATTTT+AGG | + | chr5.4:22184445-22184464 | None:intergenic | 20.0% |
| !!! | TTTATTTTTGTAGGAAAAGT+GGG | - | chr5.4:22185256-22185275 | MS.gene069113:intron | 20.0% |
| !!! | TTTTAAGTAATACTACAATG+AGG | + | chr5.4:22185589-22185608 | None:intergenic | 20.0% |
| !!! | TTTTATTTTTGTAGGAAAAG+TGG | - | chr5.4:22185255-22185274 | MS.gene069113:intron | 20.0% |
| ! | AACAAGACAAAAAGAAGAAA+TGG | + | chr5.4:22184302-22184321 | None:intergenic | 25.0% |
| ! | AACTATTTACAATTTGTCGT+AGG | - | chr5.4:22183999-22184018 | MS.gene069113:intron | 25.0% |
| ! | AGAAATTTAGACACATAATG+AGG | - | chr5.4:22183403-22183422 | MS.gene069113:CDS | 25.0% |
| ! | AGCGTATAATTAAATACAGT+TGG | - | chr5.4:22185627-22185646 | MS.gene069113:CDS | 25.0% |
| ! | CTTGATTTATAAACATGTCA+CGG | - | chr5.4:22184235-22184254 | MS.gene069113:CDS | 25.0% |
| ! | GAAATATGCAGGATTTAATA+AGG | + | chr5.4:22183383-22183402 | None:intergenic | 25.0% |
| ! | GAAATTTAGACACATAATGA+GGG | - | chr5.4:22183404-22183423 | MS.gene069113:CDS | 25.0% |
| ! | GATACAAAAGACTAGTATTA+GGG | + | chr5.4:22183819-22183838 | None:intergenic | 25.0% |
| ! | TATTGACAATAAGATGATAC+TGG | + | chr5.4:22183856-22183875 | None:intergenic | 25.0% |
| ! | TCAATATTCCAATGTATCTT+GGG | - | chr5.4:22183453-22183472 | MS.gene069113:CDS | 25.0% |
| ! | TGATACAAAAGACTAGTATT+AGG | + | chr5.4:22183820-22183839 | None:intergenic | 25.0% |
| ! | TTATCTTAAGATCATTTCCT+AGG | - | chr5.4:22183708-22183727 | MS.gene069113:intron | 25.0% |
| ! | TTCAATATTCCAATGTATCT+TGG | - | chr5.4:22183452-22183471 | MS.gene069113:CDS | 25.0% |
| !! | AACACGAGAAAAAAATGTTT+TGG | + | chr5.4:22183547-22183566 | None:intergenic | 25.0% |
| !! | TTATCTGAATAGTTTTCTCA+TGG | - | chr5.4:22184191-22184210 | MS.gene069113:CDS | 25.0% |
| !! | TTTCTGTTTGTTAATGTAGT+AGG | + | chr5.4:22183226-22183245 | None:intergenic | 25.0% |
| !!! | AGGAAACCATTTTTTTTCTT+CGG | + | chr5.4:22183791-22183810 | None:intergenic | 25.0% |
| !!! | ATTTTTTTCTCGTGTTGAAT+TGG | - | chr5.4:22183551-22183570 | MS.gene069113:intron | 25.0% |
| !!! | GATATTACTCTAGAATATCT+TGG | - | chr5.4:22183658-22183677 | MS.gene069113:intron | 25.0% |
| !!! | TCTAAATTTCTGAAATATGC+AGG | + | chr5.4:22183394-22183413 | None:intergenic | 25.0% |
| AATAGAACCAATGCAATTTG+TGG | + | chr5.4:22184127-22184146 | None:intergenic | 30.0% | |
| AATTCCTTATCCTTTACAGT+GGG | - | chr5.4:22184680-22184699 | MS.gene069113:intron | 30.0% | |
| AGACTAGTATTAGGGAAATA+AGG | + | chr5.4:22183811-22183830 | None:intergenic | 30.0% | |
| ATCGACTAGAGAGTAATAAA+TGG | + | chr5.4:22182978-22182997 | None:intergenic | 30.0% | |
| CAGCATAAATTCGAAATAAG+TGG | + | chr5.4:22184362-22184381 | None:intergenic | 30.0% | |
| CTTAATTCATCAAACACTCA+AGG | - | chr5.4:22183248-22183267 | MS.gene069113:intron | 30.0% | |
| GAGAATATATTCAAACGAAC+AGG | + | chr5.4:22183355-22183374 | None:intergenic | 30.0% | |
| GCATTTATAATGACTAAAGC+AGG | + | chr5.4:22183168-22183187 | None:intergenic | 30.0% | |
| TACATTATTCTGATGACAGA+AGG | - | chr5.4:22183026-22183045 | MS.gene069113:CDS | 30.0% | |
| TATCATGTGTCTCTTTATCT+CGG | + | chr5.4:22183602-22183621 | None:intergenic | 30.0% | |
| TCAGTAAGAATGTTTGAACT+CGG | + | chr5.4:22184579-22184598 | None:intergenic | 30.0% | |
| TGGTATTGTTGAAAATAGGA+TGG | + | chr5.4:22185445-22185464 | None:intergenic | 30.0% | |
| TTGTTGAAAATAGGATGGAA+TGG | + | chr5.4:22185440-22185459 | None:intergenic | 30.0% | |
| ! | AAAATCAAGCTGACAAGTTT+TGG | + | chr5.4:22185690-22185709 | None:intergenic | 30.0% |
| ! | AAACTTTTTGTTACCTGAGT+AGG | + | chr5.4:22183500-22183519 | None:intergenic | 30.0% |
| !! | AATATCTTGGTTTGTCCATT+AGG | - | chr5.4:22183671-22183690 | MS.gene069113:intron | 30.0% |
| !! | ATATCTTGGTTTGTCCATTA+GGG | - | chr5.4:22183672-22183691 | MS.gene069113:intron | 30.0% |
| !! | ATTGGTTCTATTATTCACTC+TGG | - | chr5.4:22184135-22184154 | MS.gene069113:CDS | 30.0% |
| !! | GATATTCTAGAGTAATATCG+AGG | + | chr5.4:22183657-22183676 | None:intergenic | 30.0% |
| !! | TCTACAATGTTGTTTCTTTC+CGG | - | chr5.4:22183066-22183085 | MS.gene069113:CDS | 30.0% |
| !!! | AAAATGTTTTGGTGAACACA+AGG | + | chr5.4:22183536-22183555 | None:intergenic | 30.0% |
| !!! | AACCATTTTTTTTCTTCGGA+AGG | + | chr5.4:22183787-22183806 | None:intergenic | 30.0% |
| !!! | ACCATTTTTTTTCTTCGGAA+GGG | + | chr5.4:22183786-22183805 | None:intergenic | 30.0% |
| AAGTCCTGAAGTGGAAAATA+GGG | + | chr5.4:22184710-22184729 | None:intergenic | 35.0% | |
| AATGTTTGAACTCGGTACAT+TGG | + | chr5.4:22184571-22184590 | None:intergenic | 35.0% | |
| AATTCTGCAATTATGGACGT+TGG | + | chr5.4:22185140-22185159 | None:intergenic | 35.0% | |
| ACTATACTGCACTCTTACTT+TGG | - | chr5.4:22183096-22183115 | MS.gene069113:CDS | 35.0% | |
| AGATTGAAAACTGACCCTAA+TGG | + | chr5.4:22183689-22183708 | None:intergenic | 35.0% | |
| AGGCTGGTATTGTTGAAAAT+AGG | + | chr5.4:22185449-22185468 | None:intergenic | 35.0% | |
| ATAAGTTCCAACCTGCAAAA+AGG | + | chr5.4:22184872-22184891 | None:intergenic | 35.0% | |
| ATGTTTGAACTCGGTACATT+GGG | + | chr5.4:22184570-22184589 | None:intergenic | 35.0% | |
| ATTCCTTATCCTTTACAGTG+GGG | - | chr5.4:22184681-22184700 | MS.gene069113:CDS | 35.0% | |
| CAATGTATCTTGGGATTTAG+TGG | - | chr5.4:22183462-22183481 | MS.gene069113:CDS | 35.0% | |
| CACAATTAACATCACAAAGG+TGG | - | chr5.4:22185035-22185054 | MS.gene069113:intron | 35.0% | |
| CACTAAATCCCAAGATACAT+TGG | + | chr5.4:22183464-22183483 | None:intergenic | 35.0% | |
| CAGTTATCTTGTTCCTTATG+CGG | - | chr5.4:22185489-22185508 | MS.gene069113:intron | 35.0% | |
| CGACATGACTTACTTGTTTA+AGG | + | chr5.4:22185543-22185562 | None:intergenic | 35.0% | |
| CTTTACCTACAAATGAGAAG+AGG | + | chr5.4:22185101-22185120 | None:intergenic | 35.0% | |
| GAATTCCTTATCCTTTACAG+TGG | - | chr5.4:22184679-22184698 | MS.gene069113:intron | 35.0% | |
| GCACACAATTAACATCACAA+AGG | - | chr5.4:22185032-22185051 | MS.gene069113:intron | 35.0% | |
| GCATAAGGAACAAGATAACT+GGG | + | chr5.4:22185490-22185509 | None:intergenic | 35.0% | |
| GTAGGTAAAGTAACAACACT+TGG | - | chr5.4:22185111-22185130 | MS.gene069113:intron | 35.0% | |
| GTTGTGGGACATTAGATAAA+AGG | + | chr5.4:22183909-22183928 | None:intergenic | 35.0% | |
| TCCCTTCCGAAGAAAAAAAA+TGG | - | chr5.4:22183782-22183801 | MS.gene069113:CDS | 35.0% | |
| TGAACTTCAATTCAGGTGTT+AGG | + | chr5.4:22185187-22185206 | None:intergenic | 35.0% | |
| TGACACTATGACCATGATTA+TGG | + | chr5.4:22184733-22184752 | None:intergenic | 35.0% | |
| TGCTATACTGTGTTTCATGT+GGG | - | chr5.4:22185315-22185334 | MS.gene069113:intron | 35.0% | |
| TTCAGGAACATGACAATTGT+CGG | - | chr5.4:22185391-22185410 | MS.gene069113:CDS | 35.0% | |
| TTGATCCTCTTCTCATTTGT+AGG | - | chr5.4:22185093-22185112 | MS.gene069113:intron | 35.0% | |
| ! | CGTCACTTCAAGTTAATTCA+AGG | - | chr5.4:22184899-22184918 | MS.gene069113:intron | 35.0% |
| ! | CTTCAAGGTGCTATAATTGT+TGG | - | chr5.4:22183429-22183448 | MS.gene069113:CDS | 35.0% |
| ! | TTACTTGTTTAAGGCCTGAA+TGG | + | chr5.4:22185534-22185553 | None:intergenic | 35.0% |
| !! | ATATACCATGAAGCATTGCA+GGG | - | chr5.4:22184617-22184636 | MS.gene069113:intron | 35.0% |
| !! | ATTGCTTTTGCTGAAGTTGT+GGG | + | chr5.4:22183924-22183943 | None:intergenic | 35.0% |
| !! | TAGTATATTGGCTGGTCTTT+GGG | - | chr5.4:22184972-22184991 | MS.gene069113:intron | 35.0% |
| AATCATGGTCATAGTGTCAC+TGG | - | chr5.4:22184734-22184753 | MS.gene069113:CDS | 40.0% | |
| ATAACTGAAGAACCCTGCAT+TGG | + | chr5.4:22184175-22184194 | None:intergenic | 40.0% | |
| ATACCCCACTGTAAAGGATA+AGG | + | chr5.4:22184687-22184706 | None:intergenic | 40.0% | |
| ATCAAGACTTTGAGTCACAC+TGG | - | chr5.4:22184841-22184860 | MS.gene069113:intron | 40.0% | |
| ATGTGTCTCTTTATCTCGGA+TGG | + | chr5.4:22183598-22183617 | None:intergenic | 40.0% | |
| CAACACCATGCAAGTTTCTT+TGG | + | chr5.4:22185875-22185894 | None:intergenic | 40.0% | |
| CAAGTTATTGTTGCGCTCAA+CGG | + | chr5.4:22184492-22184511 | None:intergenic | 40.0% | |
| CACATAATGAGGGAACTTCA+AGG | - | chr5.4:22183414-22183433 | MS.gene069113:CDS | 40.0% | |
| CACTGTTCCACAAATTGCAT+TGG | - | chr5.4:22184117-22184136 | MS.gene069113:CDS | 40.0% | |
| CGCATAAGGAACAAGATAAC+TGG | + | chr5.4:22185491-22185510 | None:intergenic | 40.0% | |
| CTGCTATACTGTGTTTCATG+TGG | - | chr5.4:22185314-22185333 | MS.gene069113:intron | 40.0% | |
| CTTCAGGACTTCCATAATCA+TGG | - | chr5.4:22184719-22184738 | MS.gene069113:CDS | 40.0% | |
| CTTCGAGGAATATCTATCTC+TGG | - | chr5.4:22184333-22184352 | MS.gene069113:intron | 40.0% | |
| GAAGTCCTGAAGTGGAAAAT+AGG | + | chr5.4:22184711-22184730 | None:intergenic | 40.0% | |
| GACCATACTGTAAAGTCGAT+AGG | + | chr5.4:22185360-22185379 | None:intergenic | 40.0% | |
| GGAGGGTTTCTGTAGTATAT+TGG | - | chr5.4:22184960-22184979 | MS.gene069113:intron | 40.0% | |
| GGTTTAGCGTTCTTCAGTTA+CGG | - | chr5.4:22184064-22184083 | MS.gene069113:CDS | 40.0% | |
| GGTTTCTGTAGTATATTGGC+TGG | - | chr5.4:22184964-22184983 | MS.gene069113:intron | 40.0% | |
| TAGGTTAATCAACCCTGTTG+TGG | - | chr5.4:22184018-22184037 | MS.gene069113:intron | 40.0% | |
| TCTTATGTCCATGAACATGG+TGG | - | chr5.4:22185721-22185740 | MS.gene069113:CDS | 40.0% | |
| TGATTATGGAAGTCCTGAAG+TGG | + | chr5.4:22184719-22184738 | None:intergenic | 40.0% | |
| TGGTGAACACAAGGAAGATA+TGG | + | chr5.4:22183527-22183546 | None:intergenic | 40.0% | |
| TTCTGTCAAAGTCGTTGAAC+CGG | + | chr5.4:22185007-22185026 | None:intergenic | 40.0% | |
| ! | AAAGCAAGTATCGCATTCAG+TGG | - | chr5.4:22184815-22184834 | MS.gene069113:intron | 40.0% |
| ! | AAGAACGAGGAGTGTATACA+TGG | - | chr5.4:22185795-22185814 | MS.gene069113:intron | 40.0% |
| ! | ACTGGTTGCTTCTGTTGATT+CGG | - | chr5.4:22184752-22184771 | MS.gene069113:CDS | 40.0% |
| ! | GGTTTATCCTTTTTGCAGGT+TGG | - | chr5.4:22184862-22184881 | MS.gene069113:intron | 40.0% |
| ! | GTATCCCTATTTTCCACTTC+AGG | - | chr5.4:22184703-22184722 | MS.gene069113:CDS | 40.0% |
| ! | TGTTTAAGGCCTGAATGGAA+TGG | + | chr5.4:22185529-22185548 | None:intergenic | 40.0% |
| ! | TGTTTGTTGAAGCATCTTCG+AGG | - | chr5.4:22184318-22184337 | MS.gene069113:CDS | 40.0% |
| ! | TTGCATCCCTTTTAACAGCT+GGG | - | chr5.4:22184517-22184536 | MS.gene069113:intron | 40.0% |
| ! | TTTGCATCCCTTTTAACAGC+TGG | - | chr5.4:22184516-22184535 | MS.gene069113:intron | 40.0% |
| !! | AGTATATTGGCTGGTCTTTG+GGG | - | chr5.4:22184973-22184992 | MS.gene069113:intron | 40.0% |
| !! | CATATACCATGAAGCATTGC+AGG | - | chr5.4:22184616-22184635 | MS.gene069113:intron | 40.0% |
| !! | CATTGCTTTTGCTGAAGTTG+TGG | + | chr5.4:22183925-22183944 | None:intergenic | 40.0% |
| !! | GTAGTATATTGGCTGGTCTT+TGG | - | chr5.4:22184971-22184990 | MS.gene069113:intron | 40.0% |
| !!! | CACTGGTTTATCCTTTTTGC+AGG | - | chr5.4:22184858-22184877 | MS.gene069113:intron | 40.0% |
| AACCCTCCAATGCAATTCCT+CGG | + | chr5.4:22184948-22184967 | None:intergenic | 45.0% | |
| ACATCACAAAGGTGGCAAGT+AGG | - | chr5.4:22185043-22185062 | MS.gene069113:intron | 45.0% | |
| ACCATGCAAGTTTCTTTGGC+AGG | + | chr5.4:22185871-22185890 | None:intergenic | 45.0% | |
| AGGATGGAATGGACATTCCA+AGG | + | chr5.4:22185429-22185448 | None:intergenic | 45.0% | |
| AGTCATGCAGTACCAATGCA+GGG | - | chr5.4:22184160-22184179 | MS.gene069113:CDS | 45.0% | |
| ATACACCCCCAGCTGTTAAA+AGG | + | chr5.4:22184527-22184546 | None:intergenic | 45.0% | |
| ATAGGGATACCCCACTGTAA+AGG | + | chr5.4:22184693-22184712 | None:intergenic | 45.0% | |
| ATGCATTGTCTACTGCTGCA+TGG | - | chr5.4:22184652-22184671 | MS.gene069113:intron | 45.0% | |
| CAGTGTAACCACCATGTTCA+TGG | + | chr5.4:22185732-22185751 | None:intergenic | 45.0% | |
| CCAAGCAAATACCAGCTTGT+GGG | + | chr5.4:22184093-22184112 | None:intergenic | 45.0% | |
| CCATGCAAGTTTCTTTGGCA+GGG | + | chr5.4:22185870-22185889 | None:intergenic | 45.0% | |
| CGCTCTTATGTCCATGAACA+TGG | - | chr5.4:22185718-22185737 | MS.gene069113:CDS | 45.0% | |
| CGTTGAGCGCAACAATAACT+TGG | - | chr5.4:22184490-22184509 | MS.gene069113:intron | 45.0% | |
| GAACATGGTGGTTACACTGT+TGG | - | chr5.4:22185733-22185752 | MS.gene069113:CDS | 45.0% | |
| GCTTGATGTCTATCCTACTC+AGG | - | chr5.4:22183484-22183503 | MS.gene069113:CDS | 45.0% | |
| GGAATATTCAGATTGCAGCG+AGG | + | chr5.4:22185849-22185868 | None:intergenic | 45.0% | |
| GGCAGTATAAGACTTGACTC+AGG | + | chr5.4:22185469-22185488 | None:intergenic | 45.0% | |
| GTATAAGACTTGACTCAGGC+TGG | + | chr5.4:22185465-22185484 | None:intergenic | 45.0% | |
| GTGCAGTATAGTTGTGATGC+CGG | + | chr5.4:22183088-22183107 | None:intergenic | 45.0% | |
| TACACCCCCAGCTGTTAAAA+GGG | + | chr5.4:22184526-22184545 | None:intergenic | 45.0% | |
| TCCAAGCAAATACCAGCTTG+TGG | + | chr5.4:22184094-22184113 | None:intergenic | 45.0% | |
| TCCCTTGCACTAAAGGAAGT+CGG | + | chr5.4:22183125-22183144 | None:intergenic | 45.0% | |
| TGCAGCAGTAGACAATGCAT+CGG | + | chr5.4:22184652-22184671 | None:intergenic | 45.0% | |
| TGCATTGTCTACTGCTGCAT+GGG | - | chr5.4:22184653-22184672 | MS.gene069113:intron | 45.0% | |
| ! | AGTAGGAGAGTAGTGGAACT+TGG | - | chr5.4:22185060-22185079 | MS.gene069113:intron | 45.0% |
| ! | ATGGTCAATCAGCTAGCTTC+AGG | - | chr5.4:22185374-22185393 | MS.gene069113:CDS | 45.0% |
| ! | CCTCGTTCTTGTTTACTTCC+CGG | + | chr5.4:22185785-22185804 | None:intergenic | 45.0% |
| ! | CTCGTTCTTGTTTACTTCCC+GGG | + | chr5.4:22185784-22185803 | None:intergenic | 45.0% |
| ! | TGCATCCCTTTTAACAGCTG+GGG | - | chr5.4:22184518-22184537 | MS.gene069113:intron | 45.0% |
| !! | AACTTGCATGGTGTTGCTGT+TGG | - | chr5.4:22185879-22185898 | MS.gene069113:intron | 45.0% |
| !! | ACTGTTGGTGGCATTTCTAC+TGG | - | chr5.4:22185748-22185767 | MS.gene069113:CDS | 45.0% |
| !! | GGCCTATCGACTTTACAGTA+TGG | - | chr5.4:22185355-22185374 | MS.gene069113:CDS | 45.0% |
| !!! | TTTTTTATTTTTATTTTTGT+AGG | - | chr5.4:22185247-22185266 | MS.gene069113:intron | 5.0% |
| AAACCTACAGCAGCAACCGT+TGG | + | chr5.4:22184049-22184068 | None:intergenic | 50.0% | |
| AACGAGCTCCCTTGCACTAA+AGG | + | chr5.4:22183132-22183151 | None:intergenic | 50.0% | |
| AATTCAAGGCCTCCAACTCC+AGG | - | chr5.4:22184913-22184932 | MS.gene069113:intron | 50.0% | |
| ACACAGTATAGCAGCAGCCA+AGG | + | chr5.4:22185308-22185327 | None:intergenic | 50.0% | |
| ACATCTGTTCCACCCATGAC+TGG | + | chr5.4:22182936-22182955 | None:intergenic | 50.0% | |
| ACCCGACTTCCTTTAGTGCA+AGG | - | chr5.4:22183120-22183139 | MS.gene069113:intron | 50.0% | |
| AGCCGAGGAATTGCATTGGA+GGG | - | chr5.4:22184943-22184962 | MS.gene069113:intron | 50.0% | |
| AGTTACGGTTTCCCACAAGC+TGG | - | chr5.4:22184079-22184098 | MS.gene069113:CDS | 50.0% | |
| ATCAGCCCTGCAATGCTTCA+TGG | + | chr5.4:22184625-22184644 | None:intergenic | 50.0% | |
| CATGGTGGTTACACTGTTGG+TGG | - | chr5.4:22185736-22185755 | MS.gene069113:CDS | 50.0% | |
| CCCACAAGCTGGTATTTGCT+TGG | - | chr5.4:22184090-22184109 | MS.gene069113:CDS | 50.0% | |
| CCCGACTTCCTTTAGTGCAA+GGG | - | chr5.4:22183121-22183140 | MS.gene069113:intron | 50.0% | |
| CCCTGCCAAAGAAACTTGCA+TGG | - | chr5.4:22185867-22185886 | MS.gene069113:intron | 50.0% | |
| CCCTTGCACTAAAGGAAGTC+GGG | + | chr5.4:22183124-22183143 | None:intergenic | 50.0% | |
| CCGGGAAGTAAACAAGAACG+AGG | - | chr5.4:22185782-22185801 | MS.gene069113:intron | 50.0% | |
| GAGTCATGCAGTACCAATGC+AGG | - | chr5.4:22184159-22184178 | MS.gene069113:CDS | 50.0% | |
| TCAAGTGGGCCATTCCATTC+AGG | - | chr5.4:22185517-22185536 | MS.gene069113:intron | 50.0% | |
| TCTACTGGACAACACTGTCC+CGG | - | chr5.4:22185763-22185782 | MS.gene069113:CDS | 50.0% | |
| TCTCCTTGCTTCCATTCCAC+AGG | - | chr5.4:22185282-22185301 | MS.gene069113:intron | 50.0% | |
| TGTGAGCCGAGGAATTGCAT+TGG | - | chr5.4:22184939-22184958 | MS.gene069113:intron | 50.0% | |
| TTTCATGTGGGCTCTTACCG+TGG | - | chr5.4:22185327-22185346 | MS.gene069113:intron | 50.0% | |
| ! | GCATCCCTTTTAACAGCTGG+GGG | - | chr5.4:22184519-22184538 | MS.gene069113:intron | 50.0% |
| AGGCCTGTGGAATGGAAGCA+AGG | + | chr5.4:22185288-22185307 | None:intergenic | 55.0% | |
| AGTCGATAGGCCCAATGCCA+CGG | + | chr5.4:22185347-22185366 | None:intergenic | 55.0% | |
| ATTCCTCGGCTCACAACTCC+TGG | + | chr5.4:22184934-22184953 | None:intergenic | 55.0% | |
| CTACTGGACAACACTGTCCC+GGG | - | chr5.4:22185764-22185783 | MS.gene069113:CDS | 55.0% | |
| CTCACAACTCCTGGAGTTGG+AGG | + | chr5.4:22184925-22184944 | None:intergenic | 55.0% | |
| CTTATGCGGCAGCGTCAAGT+GGG | - | chr5.4:22185503-22185522 | MS.gene069113:intron | 55.0% | |
| GAGAGCTGAAGACATTGCCG+CGG | - | chr5.4:22185820-22185839 | MS.gene069113:intron | 55.0% | |
| GAGCCGAGGAATTGCATTGG+AGG | - | chr5.4:22184942-22184961 | MS.gene069113:intron | 55.0% | |
| GGTGGCAAGTAGGAGAGTAG+TGG | - | chr5.4:22185053-22185072 | MS.gene069113:intron | 55.0% | |
| GTCGGCGTTGCATTGTTCCT+TGG | - | chr5.4:22185409-22185428 | MS.gene069113:CDS | 55.0% | |
| TGCTTCCATTCCACAGGCCT+TGG | - | chr5.4:22185288-22185307 | MS.gene069113:intron | 55.0% | |
| TGGGCTCTTACCGTGGCATT+GGG | - | chr5.4:22185334-22185353 | MS.gene069113:CDS | 55.0% | |
| !! | GGTCTTTGGGGTTCAGGTAC+CGG | - | chr5.4:22184985-22185004 | MS.gene069113:intron | 55.0% |
| !! | TTGGCTGGTCTTTGGGGTTC+AGG | - | chr5.4:22184979-22184998 | MS.gene069113:intron | 55.0% |
| ACCGTTGGCGCAACCACAAC+AGG | + | chr5.4:22184034-22184053 | None:intergenic | 60.0% | |
| ACTCCAGGAGTTGTGAGCCG+AGG | - | chr5.4:22184928-22184947 | MS.gene069113:intron | 60.0% | |
| AGCAGCCAAGGCCTGTGGAA+TGG | + | chr5.4:22185296-22185315 | None:intergenic | 60.0% | |
| ATAGCAGCAGCCAAGGCCTG+TGG | + | chr5.4:22185301-22185320 | None:intergenic | 60.0% | |
| CCACTTGACGCTGCCGCATA+AGG | + | chr5.4:22185505-22185524 | None:intergenic | 60.0% | |
| CCCTGTTGTGGTTGCGCCAA+CGG | - | chr5.4:22184030-22184049 | MS.gene069113:intron | 60.0% | |
| CCGTTGGCGCAACCACAACA+GGG | + | chr5.4:22184033-22184052 | None:intergenic | 60.0% | |
| CCTTATGCGGCAGCGTCAAG+TGG | - | chr5.4:22185502-22185521 | MS.gene069113:intron | 60.0% | |
| CGGCTCACAACTCCTGGAGT+TGG | + | chr5.4:22184928-22184947 | None:intergenic | 60.0% | |
| GTGGGCTCTTACCGTGGCAT+TGG | - | chr5.4:22185333-22185352 | MS.gene069113:CDS | 60.0% | |
| ! | AGATTGCAGCGAGGCATCCG+CGG | + | chr5.4:22185840-22185859 | None:intergenic | 60.0% |
| GCGCCAACGGTTGCTGCTGT+AGG | - | chr5.4:22184043-22184062 | MS.gene069113:intron | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5.4 | gene | 22182927 | 22185910 | 22182927 | ID=MS.gene069113 |
| chr5.4 | mRNA | 22182927 | 22185910 | 22182927 | ID=MS.gene069113.t1;Parent=MS.gene069113 |
| chr5.4 | exon | 22185884 | 22185910 | 22185884 | ID=MS.gene069113.t1.exon1;Parent=MS.gene069113.t1 |
| chr5.4 | CDS | 22185884 | 22185910 | 22185884 | ID=cds.MS.gene069113.t1;Parent=MS.gene069113.t1 |
| chr5.4 | exon | 22185622 | 22185792 | 22185622 | ID=MS.gene069113.t1.exon2;Parent=MS.gene069113.t1 |
| chr5.4 | CDS | 22185622 | 22185792 | 22185622 | ID=cds.MS.gene069113.t1;Parent=MS.gene069113.t1 |
| chr5.4 | exon | 22185332 | 22185432 | 22185332 | ID=MS.gene069113.t1.exon3;Parent=MS.gene069113.t1 |
| chr5.4 | CDS | 22185332 | 22185432 | 22185332 | ID=cds.MS.gene069113.t1;Parent=MS.gene069113.t1 |
| chr5.4 | exon | 22184681 | 22184816 | 22184681 | ID=MS.gene069113.t1.exon4;Parent=MS.gene069113.t1 |
| chr5.4 | CDS | 22184681 | 22184816 | 22184681 | ID=cds.MS.gene069113.t1;Parent=MS.gene069113.t1 |
| chr5.4 | exon | 22184457 | 22184507 | 22184457 | ID=MS.gene069113.t1.exon5;Parent=MS.gene069113.t1 |
| chr5.4 | CDS | 22184457 | 22184507 | 22184457 | ID=cds.MS.gene069113.t1;Parent=MS.gene069113.t1 |
| chr5.4 | exon | 22184064 | 22184351 | 22184064 | ID=MS.gene069113.t1.exon6;Parent=MS.gene069113.t1 |
| chr5.4 | CDS | 22184064 | 22184351 | 22184064 | ID=cds.MS.gene069113.t1;Parent=MS.gene069113.t1 |
| chr5.4 | exon | 22183723 | 22183957 | 22183723 | ID=MS.gene069113.t1.exon7;Parent=MS.gene069113.t1 |
| chr5.4 | CDS | 22183723 | 22183957 | 22183723 | ID=cds.MS.gene069113.t1;Parent=MS.gene069113.t1 |
| chr5.4 | exon | 22183288 | 22183568 | 22183288 | ID=MS.gene069113.t1.exon8;Parent=MS.gene069113.t1 |
| chr5.4 | CDS | 22183288 | 22183568 | 22183288 | ID=cds.MS.gene069113.t1;Parent=MS.gene069113.t1 |
| chr5.4 | exon | 22182927 | 22183136 | 22182927 | ID=MS.gene069113.t1.exon9;Parent=MS.gene069113.t1 |
| chr5.4 | CDS | 22182927 | 22183136 | 22182927 | ID=cds.MS.gene069113.t1;Parent=MS.gene069113.t1 |
| Gene Sequence |
| Protein sequence |
