Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene037909.t1 | XP_013467265.1 | 96.6 | 584 | 17 | 1 | 1 | 584 | 1 | 581 | 0.00E+00 | 1111.7 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene037909.t1 | Q5XQC7 | 67.8 | 580 | 179 | 4 | 1 | 573 | 1 | 579 | 5.7e-226 | 785.0 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene037909.t1 | A0A072VGY2 | 96.6 | 584 | 17 | 1 | 1 | 584 | 1 | 581 | 0.0e+00 | 1111.7 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene037909 | MS.gene70112 | PPI |
| MS.gene037909 | MS.gene49772 | PPI |
| MS.gene000424 | MS.gene037909 | PPI |
| MS.gene030511 | MS.gene037909 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene037909.t1 | MTR_1g048160 | 96.575 | 584 | 17 | 1 | 1 | 584 | 1 | 581 | 0.0 | 1156 |
| MS.gene037909.t1 | MTR_7g114130 | 88.527 | 584 | 66 | 1 | 1 | 583 | 1 | 584 | 0.0 | 1074 |
| MS.gene037909.t1 | MTR_8g096190 | 60.172 | 580 | 220 | 6 | 1 | 572 | 1 | 577 | 0.0 | 709 |
| MS.gene037909.t1 | MTR_8g096190 | 59.239 | 552 | 214 | 6 | 1 | 544 | 1 | 549 | 0.0 | 662 |
| MS.gene037909.t1 | MTR_7g114100 | 73.182 | 440 | 81 | 5 | 148 | 584 | 13 | 418 | 0.0 | 629 |
| MS.gene037909.t1 | MTR_8g096190 | 58.126 | 523 | 208 | 6 | 1 | 515 | 1 | 520 | 0.0 | 613 |
| MS.gene037909.t1 | MTR_7g033100 | 32.000 | 250 | 127 | 7 | 337 | 563 | 107 | 336 | 2.11e-22 | 100 |
| MS.gene037909.t1 | MTR_7g033100 | 32.540 | 252 | 123 | 9 | 337 | 563 | 107 | 336 | 3.45e-22 | 99.8 |
| MS.gene037909.t1 | MTR_6g092020 | 29.010 | 293 | 162 | 10 | 301 | 570 | 38 | 307 | 4.03e-21 | 96.3 |
| MS.gene037909.t1 | MTR_3g086520 | 32.411 | 253 | 122 | 10 | 337 | 563 | 125 | 354 | 1.17e-20 | 95.5 |
| MS.gene037909.t1 | MTR_3g086520 | 32.411 | 253 | 122 | 10 | 337 | 563 | 125 | 354 | 1.18e-20 | 95.5 |
| MS.gene037909.t1 | MTR_3g086520 | 32.411 | 253 | 122 | 10 | 337 | 563 | 122 | 351 | 1.43e-20 | 95.5 |
| MS.gene037909.t1 | MTR_8g089670 | 30.800 | 250 | 130 | 7 | 337 | 563 | 132 | 361 | 2.60e-20 | 94.7 |
| MS.gene037909.t1 | MTR_2g063843 | 29.021 | 286 | 157 | 10 | 301 | 563 | 51 | 313 | 2.61e-20 | 94.0 |
| MS.gene037909.t1 | MTR_2g063907 | 29.730 | 259 | 135 | 8 | 337 | 570 | 81 | 317 | 2.81e-20 | 94.0 |
| MS.gene037909.t1 | MTR_3g075530 | 30.903 | 288 | 144 | 11 | 331 | 583 | 88 | 355 | 3.14e-20 | 94.0 |
| MS.gene037909.t1 | MTR_2g063857 | 29.412 | 289 | 155 | 10 | 301 | 563 | 59 | 324 | 3.86e-20 | 93.2 |
| MS.gene037909.t1 | MTR_2g063857 | 29.021 | 286 | 156 | 8 | 303 | 563 | 61 | 324 | 3.86e-20 | 93.6 |
| MS.gene037909.t1 | MTR_6g092100 | 30.800 | 250 | 128 | 8 | 337 | 563 | 29 | 256 | 4.66e-20 | 91.7 |
| MS.gene037909.t1 | MTR_8g447220 | 29.603 | 277 | 141 | 10 | 337 | 581 | 80 | 334 | 8.97e-20 | 92.4 |
| MS.gene037909.t1 | MTR_8g447220 | 29.804 | 255 | 132 | 9 | 337 | 566 | 80 | 312 | 4.74e-19 | 89.0 |
| MS.gene037909.t1 | MTR_6g021730 | 28.025 | 314 | 168 | 10 | 288 | 563 | 63 | 356 | 5.21e-19 | 90.5 |
| MS.gene037909.t1 | MTR_3g096520 | 30.147 | 272 | 139 | 11 | 322 | 563 | 87 | 337 | 1.85e-18 | 88.6 |
| MS.gene037909.t1 | MTR_3g096520 | 30.147 | 272 | 139 | 11 | 322 | 563 | 104 | 354 | 2.06e-18 | 88.6 |
| MS.gene037909.t1 | MTR_3g096520 | 30.147 | 272 | 139 | 11 | 322 | 563 | 87 | 337 | 2.08e-18 | 88.6 |
| MS.gene037909.t1 | MTR_7g081170 | 28.846 | 156 | 92 | 4 | 366 | 511 | 85 | 231 | 7.55e-13 | 68.9 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene037909.t1 | AT1G08860 | 67.759 | 580 | 179 | 4 | 1 | 573 | 1 | 579 | 0.0 | 816 |
| MS.gene037909.t1 | AT5G61910 | 59.828 | 580 | 226 | 4 | 1 | 575 | 769 | 1346 | 0.0 | 713 |
| MS.gene037909.t1 | AT5G61900 | 59.828 | 580 | 226 | 4 | 1 | 575 | 1 | 578 | 0.0 | 710 |
| MS.gene037909.t1 | AT5G61900 | 59.828 | 580 | 226 | 4 | 1 | 575 | 1 | 578 | 0.0 | 710 |
| MS.gene037909.t1 | AT5G07300 | 57.019 | 577 | 240 | 4 | 1 | 570 | 1 | 576 | 0.0 | 682 |
| MS.gene037909.t1 | AT1G67800 | 31.746 | 252 | 129 | 7 | 337 | 565 | 93 | 324 | 5.54e-23 | 102 |
| MS.gene037909.t1 | AT1G67800 | 31.746 | 252 | 129 | 7 | 337 | 565 | 93 | 324 | 5.54e-23 | 102 |
| MS.gene037909.t1 | AT1G67800 | 31.746 | 252 | 129 | 7 | 337 | 565 | 93 | 324 | 5.54e-23 | 102 |
| MS.gene037909.t1 | AT1G67800 | 31.746 | 252 | 129 | 7 | 337 | 565 | 93 | 324 | 5.54e-23 | 102 |
| MS.gene037909.t1 | AT1G67800 | 31.746 | 252 | 129 | 7 | 337 | 565 | 113 | 344 | 6.75e-23 | 102 |
| MS.gene037909.t1 | AT1G67800 | 31.746 | 252 | 129 | 7 | 337 | 565 | 113 | 344 | 7.76e-23 | 101 |
| MS.gene037909.t1 | AT3G01650 | 31.600 | 250 | 128 | 7 | 337 | 563 | 156 | 385 | 3.77e-21 | 97.4 |
| MS.gene037909.t1 | AT3G01650 | 31.600 | 250 | 128 | 7 | 337 | 563 | 156 | 385 | 3.77e-21 | 97.4 |
| MS.gene037909.t1 | AT5G14420 | 30.400 | 250 | 131 | 7 | 337 | 563 | 122 | 351 | 4.69e-20 | 94.0 |
| MS.gene037909.t1 | AT5G14420 | 30.400 | 250 | 131 | 7 | 337 | 563 | 122 | 351 | 4.69e-20 | 94.0 |
| MS.gene037909.t1 | AT5G14420 | 30.400 | 250 | 131 | 7 | 337 | 563 | 122 | 351 | 4.69e-20 | 94.0 |
| MS.gene037909.t1 | AT5G14420 | 30.400 | 250 | 131 | 7 | 337 | 563 | 122 | 351 | 4.69e-20 | 94.0 |
| MS.gene037909.t1 | AT1G79380 | 29.348 | 276 | 146 | 10 | 322 | 568 | 58 | 313 | 6.89e-20 | 92.8 |
| MS.gene037909.t1 | AT5G63970 | 28.966 | 290 | 155 | 11 | 322 | 581 | 16 | 284 | 2.92e-19 | 90.1 |
| MS.gene037909.t1 | AT5G63970 | 28.966 | 290 | 155 | 11 | 322 | 581 | 16 | 284 | 2.92e-19 | 90.1 |
Find 131 sgRNAs with CRISPR-Local
Find 277 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTATCAGGACCCACTTTATT+TGG | 0.094507 | 1.1:+31444714 | MS.gene037909:CDS |
| CTCTGTTGTGCAAGCTCTTT+TGG | 0.131277 | 1.1:+31445736 | MS.gene037909:CDS |
| AGACAAAGTGGTCTCCATTT+TGG | 0.193575 | 1.1:-31443198 | None:intergenic |
| AATATTTATGCAGGCTATTA+TGG | 0.197035 | 1.1:+31444116 | MS.gene037909:intron |
| GGAACTACCTAGTCAATTTC+TGG | 0.215767 | 1.1:+31445760 | MS.gene037909:CDS |
| CAGTTTCCTGCTTGGGGATT+TGG | 0.225046 | 1.1:+31444177 | MS.gene037909:CDS |
| TTGTTGGTTGTTGCAGATTC+AGG | 0.267952 | 1.1:-31440738 | None:intergenic |
| TGCTTTAACCACAGCATCTA+TGG | 0.279505 | 1.1:-31445184 | None:intergenic |
| TGGATTTGAACTAAACTTCT+TGG | 0.283622 | 1.1:+31443783 | MS.gene037909:CDS |
| AGAGGGTGCATGAGGGAAAT+GGG | 0.316016 | 1.1:-31445819 | None:intergenic |
| TAGAGGGTGCATGAGGGAAA+TGG | 0.331353 | 1.1:-31445820 | None:intergenic |
| CCCTTATCGATTCTTATAGT+TGG | 0.331752 | 1.1:+31445216 | MS.gene037909:CDS |
| TTACGCAGTGTCACGCTATC+AGG | 0.336454 | 1.1:+31444699 | MS.gene037909:CDS |
| ATAACTTCAGTCTTGAAAAT+AGG | 0.338975 | 1.1:-31443159 | None:intergenic |
| TGATAAGCAGTTTCCTGCTT+GGG | 0.349559 | 1.1:+31444170 | MS.gene037909:CDS |
| ACAACAATTTAAATCCAAAA+TGG | 0.352815 | 1.1:+31443184 | MS.gene037909:CDS |
| AGCATGTAACTTACTTGATC+TGG | 0.364428 | 1.1:+31441765 | MS.gene037909:CDS |
| TGTAGGAGTTGAAGGCATAA+TGG | 0.372940 | 1.1:+31444659 | MS.gene037909:CDS |
| TCCCTATGTGTTTAGGTTGT+AGG | 0.375125 | 1.1:+31444642 | MS.gene037909:intron |
| GGTTAAGCTCCTGCTTGGTT+TGG | 0.381608 | 1.1:-31442839 | None:intergenic |
| TGTCTTAATTTCCAGCAGTT+TGG | 0.391943 | 1.1:+31443216 | MS.gene037909:CDS |
| AATAGTTTACAAACCTTTGT+GGG | 0.404665 | 1.1:-31442232 | None:intergenic |
| TCTGAAGGGTCAACTCTTTG+TGG | 0.407921 | 1.1:+31443711 | MS.gene037909:CDS |
| GATAACTGGTCCAAATAAAG+TGG | 0.410564 | 1.1:-31444724 | None:intergenic |
| TGTGCAGCCATGTTGATAAC+TGG | 0.419195 | 1.1:-31444738 | None:intergenic |
| CAAGCAGGAGCTTAACCTTA+AGG | 0.422863 | 1.1:+31442845 | MS.gene037909:CDS |
| TCGATGTAATGCAAAGAATC+TGG | 0.423247 | 1.1:-31443938 | None:intergenic |
| TTGGTTGCGGTAGATTTCAC+TGG | 0.425129 | 1.1:+31443802 | MS.gene037909:CDS |
| GTTTAGGTTGTAGGAGTTGA+AGG | 0.425836 | 1.1:+31444651 | MS.gene037909:intron |
| CAGATTAAAACAATGAGATA+TGG | 0.429091 | 1.1:-31444220 | None:intergenic |
| GAAATTTCAGAGTGATCCTA+TGG | 0.433621 | 1.1:+31441927 | MS.gene037909:intron |
| TTGTAAAATCTATTGAATAG+AGG | 0.435997 | 1.1:-31445837 | None:intergenic |
| ACCAACTATAAGAATCGATA+AGG | 0.436043 | 1.1:-31445217 | None:intergenic |
| CTTACTTTGTACTTCTCTCA+TGG | 0.444065 | 1.1:-31445452 | None:intergenic |
| CCAACTATAAGAATCGATAA+GGG | 0.444274 | 1.1:-31445216 | None:intergenic |
| TATCAACATGGCTGCACAAA+TGG | 0.446356 | 1.1:+31444743 | MS.gene037909:CDS |
| TTACTTTACTTCCAAACTGC+TGG | 0.447464 | 1.1:-31443227 | None:intergenic |
| TTTCCTGCTTGGGGATTTGG+AGG | 0.449938 | 1.1:+31444180 | MS.gene037909:CDS |
| GAATAGTTTACAAACCTTTG+TGG | 0.453878 | 1.1:-31442233 | None:intergenic |
| AACTGTCTCCTCAGCATGAA+TGG | 0.454232 | 1.1:-31442917 | None:intergenic |
| AAAGAAAGGAGACGGCAAAT+TGG | 0.455152 | 1.1:+31441963 | MS.gene037909:CDS |
| GACGGCAAATTGGAAGAATT+AGG | 0.455330 | 1.1:+31441973 | MS.gene037909:CDS |
| CTGAATGATCAAGAATTCCT+TGG | 0.460295 | 1.1:+31442511 | MS.gene037909:CDS |
| AGTGGCAATCATGTACTTAT+CGG | 0.460443 | 1.1:+31443379 | MS.gene037909:CDS |
| TGTGGATCAATATTGTGAAA+AGG | 0.461879 | 1.1:+31443729 | MS.gene037909:CDS |
| CTGATAAGCAGTTTCCTGCT+TGG | 0.464590 | 1.1:+31444169 | MS.gene037909:CDS |
| TTCTTTATTATAGGTTCTGA+AGG | 0.465940 | 1.1:+31443696 | MS.gene037909:intron |
| ACAATGAGATATGGTACCTC+CGG | 0.467091 | 1.1:-31444211 | None:intergenic |
| ATCAACGGCGTCATTGTTGT+TGG | 0.467147 | 1.1:-31440754 | None:intergenic |
| CAGGTACTGGATGCTGATAA+TGG | 0.468704 | 1.1:+31445370 | MS.gene037909:intron |
| TTACTTTGTACTTCTCTCAT+GGG | 0.469535 | 1.1:-31445451 | None:intergenic |
| TATATATGTCCAGCTTCAAA+TGG | 0.469854 | 1.1:+31443902 | MS.gene037909:intron |
| TATCTTCCGTTGCTCTCACT+TGG | 0.470928 | 1.1:+31442963 | MS.gene037909:CDS |
| CATAACGAACTGTTTGAATC+CGG | 0.472537 | 1.1:+31442008 | MS.gene037909:CDS |
| ATGCAGGCTATTATGGAGGT+TGG | 0.472616 | 1.1:+31444123 | MS.gene037909:intron |
| AATAGTAGTCAAATAAATCA+AGG | 0.473244 | 1.1:+31442886 | MS.gene037909:CDS |
| TTGCATTACATCGATTTATC+CGG | 0.473940 | 1.1:+31443947 | MS.gene037909:CDS |
| ACTCTTGATATCCTTAGAAA+AGG | 0.477739 | 1.1:-31443114 | None:intergenic |
| TTTCTCACCTCAGAGCTAGT+TGG | 0.480972 | 1.1:-31444252 | None:intergenic |
| TCGGTTAAATTCATACCAAA+AGG | 0.481359 | 1.1:+31443970 | MS.gene037909:CDS |
| TGTAAAATCTATTGAATAGA+GGG | 0.482556 | 1.1:-31445836 | None:intergenic |
| GAAGGCATAATGGAAGCTTA+TGG | 0.483853 | 1.1:+31444669 | MS.gene037909:CDS |
| TCTTGTCCATTGCGTGTGGA+TGG | 0.491556 | 1.1:-31443592 | None:intergenic |
| CTTAAGGTTAAGCTCCTGCT+TGG | 0.492355 | 1.1:-31442844 | None:intergenic |
| TTTGCATATACCACAGCCAT+AGG | 0.503237 | 1.1:-31441943 | None:intergenic |
| TGATCTGGACATTGCATCAA+AGG | 0.506204 | 1.1:+31441780 | MS.gene037909:CDS |
| TGCAAAGAATCTGGCTGTTG+AGG | 0.510911 | 1.1:-31443929 | None:intergenic |
| TCGATTCTTATAGTTGGTGT+TGG | 0.511769 | 1.1:+31445222 | MS.gene037909:CDS |
| GTGGCAATCATGTACTTATC+GGG | 0.514625 | 1.1:+31443380 | MS.gene037909:CDS |
| GATTTCTTCTACACCGCTCA+AGG | 0.515780 | 1.1:+31440774 | MS.gene037909:CDS |
| GACATTGACACATCATATCA+TGG | 0.517697 | 1.1:+31442205 | MS.gene037909:CDS |
| TGAACTAAACTTCTTGGTTG+CGG | 0.519654 | 1.1:+31443789 | MS.gene037909:CDS |
| ATATCAAGAGTGGTTGAGAG+TGG | 0.522006 | 1.1:+31443126 | MS.gene037909:CDS |
| GATAAGCAGTTTCCTGCTTG+GGG | 0.534286 | 1.1:+31444171 | MS.gene037909:CDS |
| TCAAAACACTCAATAAGTAA+TGG | 0.535000 | 1.1:-31443346 | None:intergenic |
| AGTGCTGTTATATGATGAAA+GGG | 0.548407 | 1.1:-31444775 | None:intergenic |
| TAGTGCTGTTATATGATGAA+AGG | 0.549634 | 1.1:-31444776 | None:intergenic |
| CTATGTATTGCTTATCATAA+CGG | 0.550933 | 1.1:+31444803 | MS.gene037909:CDS |
| TTTATTGACTACATATCTAG+TGG | 0.553134 | 1.1:+31443763 | MS.gene037909:CDS |
| AAGCGCTGATTTCACGAGCA+TGG | 0.554254 | 1.1:+31445245 | MS.gene037909:CDS |
| CAATGAGATATGGTACCTCC+GGG | 0.558114 | 1.1:-31444210 | None:intergenic |
| CGAACTGTTTGAATCCGGAA+TGG | 0.558135 | 1.1:+31442013 | MS.gene037909:CDS |
| TTGGTATGAATTTAACCGAC+CGG | 0.559167 | 1.1:-31443966 | None:intergenic |
| ATAGTAGTCAAATAAATCAA+GGG | 0.568639 | 1.1:+31442887 | MS.gene037909:CDS |
| CTTCTCTTGTCCATTGCGTG+TGG | 0.575583 | 1.1:-31443596 | None:intergenic |
| TTTCCTCCAAATCCCCAAGC+AGG | 0.575985 | 1.1:-31444183 | None:intergenic |
| GCTGTGGTATATGCAAAGAA+AGG | 0.576181 | 1.1:+31441949 | MS.gene037909:CDS |
| GTCATGCCATCCACACGCAA+TGG | 0.577672 | 1.1:+31443586 | MS.gene037909:CDS |
| GCCATTGTTTACCAATGTCG+AGG | 0.577910 | 1.1:+31440803 | MS.gene037909:CDS |
| TGCTGGAAATTAAGACAAAG+TGG | 0.581538 | 1.1:-31443210 | None:intergenic |
| TATTGAATAGAGGGTGCATG+AGG | 0.582257 | 1.1:-31445827 | None:intergenic |
| TCAGAGTGATCCTATGGCTG+TGG | 0.582904 | 1.1:+31441933 | MS.gene037909:intron |
| TACTTTGTACTTCTCTCATG+GGG | 0.583824 | 1.1:-31445450 | None:intergenic |
| CACACGCAATGGACAAGAGA+AGG | 0.587694 | 1.1:+31443597 | MS.gene037909:CDS |
| GGCAATTACCATTCATGCTG+AGG | 0.588514 | 1.1:+31442909 | MS.gene037909:CDS |
| TCAAGAGTGGTTGAGAGTGG+AGG | 0.591973 | 1.1:+31443129 | MS.gene037909:CDS |
| ACCTTAAGGCTTCAAAACAA+AGG | 0.593551 | 1.1:+31442859 | MS.gene037909:CDS |
| AATTAGGGTTTATAATGGGA+GGG | 0.594321 | 1.1:+31440667 | None:intergenic |
| GGCTAGTTGCACTTTATCAG+AGG | 0.599539 | 1.1:+31442537 | MS.gene037909:CDS |
| AAGTGCAACTAGCCTCTCCA+AGG | 0.602063 | 1.1:-31442528 | None:intergenic |
| TCAAGAAACCATAGATGCTG+TGG | 0.603071 | 1.1:+31445176 | MS.gene037909:CDS |
| ATTTATGCAGGCTATTATGG+AGG | 0.603196 | 1.1:+31444119 | MS.gene037909:intron |
| AGATTGTGACCAAACCAAGC+AGG | 0.609422 | 1.1:+31442830 | MS.gene037909:intron |
| TCTTTATTATAGGTTCTGAA+GGG | 0.611405 | 1.1:+31443697 | MS.gene037909:intron |
| GAATTAGGGTTTATAATGGG+AGG | 0.611494 | 1.1:+31440666 | None:intergenic |
| TTAAGGCTTCAAAACAAAGG+AGG | 0.617378 | 1.1:+31442862 | MS.gene037909:CDS |
| AATCGTACATACCTCGACAT+TGG | 0.617770 | 1.1:-31440814 | None:intergenic |
| GTATATGCAAAGAAAGGAGA+CGG | 0.618097 | 1.1:+31441955 | MS.gene037909:CDS |
| TAAGGCTTCAAAACAAAGGA+GGG | 0.618624 | 1.1:+31442863 | MS.gene037909:CDS |
| GAGGGTGCATGAGGGAAATG+GGG | 0.624667 | 1.1:-31445818 | None:intergenic |
| CAACTATAAGAATCGATAAG+GGG | 0.627024 | 1.1:-31445215 | None:intergenic |
| TGAAGGATAGCTTACACAAG+TGG | 0.629629 | 1.1:-31442078 | None:intergenic |
| ACCTCGACATTGGTAAACAA+TGG | 0.630957 | 1.1:-31440804 | None:intergenic |
| ATATCATGGTGTTCCCACAA+AGG | 0.631966 | 1.1:+31442219 | MS.gene037909:CDS |
| ATAACTGGTCCAAATAAAGT+GGG | 0.632296 | 1.1:-31444723 | None:intergenic |
| TGAGGGAAATGGGGAACGAG+TGG | 0.634702 | 1.1:-31445809 | None:intergenic |
| GGATTTGGAGGAAAGATACC+CGG | 0.639302 | 1.1:+31444192 | MS.gene037909:CDS |
| GCAGCGAAAGAAGCAGTAGG+AGG | 0.639513 | 1.1:+31440708 | MS.gene037909:CDS |
| TAGTAGTCAAATAAATCAAG+GGG | 0.641244 | 1.1:+31442888 | MS.gene037909:CDS |
| ATGAAAGCCAGAAATTGACT+AGG | 0.645745 | 1.1:-31445767 | None:intergenic |
| TGATCAAGAATTCCTTGGAG+AGG | 0.649527 | 1.1:+31442516 | MS.gene037909:CDS |
| AAAGCAGCGAAAGAAGCAGT+AGG | 0.650157 | 1.1:+31440705 | MS.gene037909:CDS |
| ATTTGGACCAGTTATCAACA+TGG | 0.650980 | 1.1:+31444731 | MS.gene037909:CDS |
| TGTTATCCAAGTGAGAGCAA+CGG | 0.656188 | 1.1:-31442969 | None:intergenic |
| CAATGGCTGAAAACCTTGAG+CGG | 0.661576 | 1.1:-31440787 | None:intergenic |
| ATTGAATAGAGGGTGCATGA+GGG | 0.680710 | 1.1:-31445826 | None:intergenic |
| AGCGGTGTAGAAGAAATCAA+CGG | 0.695389 | 1.1:-31440769 | None:intergenic |
| TGGGAGTCCAACTAGCTCTG+AGG | 0.699541 | 1.1:+31444245 | MS.gene037909:CDS |
| CGCTGATTTCACGAGCATGG+AGG | 0.700427 | 1.1:+31445248 | MS.gene037909:CDS |
| ATTACATCGATTTATCCGGT+CGG | 0.702197 | 1.1:+31443951 | MS.gene037909:CDS |
| TTTGGAGGAAAGATACCCGG+AGG | 0.768868 | 1.1:+31444195 | MS.gene037909:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TGATTAAATTTCTTTATTAT+AGG | + | chr1.1:31443687-31443706 | MS.gene037909:intron | 10.0% |
| !!! | ATAGATTTTTTTACAATAAA+TGG | - | chr1.1:31441237-31441256 | None:intergenic | 10.0% |
| !!! | ATTTAATACTCTTATATTTT+TGG | + | chr1.1:31445606-31445625 | MS.gene037909:intron | 10.0% |
| !!! | TTTTAAATAGTTTTGATTAA+AGG | + | chr1.1:31445014-31445033 | MS.gene037909:intron | 10.0% |
| !! | ATAATCAATTTCTATAACTT+TGG | + | chr1.1:31441327-31441346 | MS.gene037909:intron | 15.0% |
| !!! | AAGGCAAATATTTTAATAAT+CGG | + | chr1.1:31445033-31445052 | MS.gene037909:intron | 15.0% |
| !!! | TATATTAATTTTCGAAATGA+AGG | - | chr1.1:31442098-31442117 | None:intergenic | 15.0% |
| !! | AAAAGAAGTTAAAAAATGGT+AGG | - | chr1.1:31444085-31444104 | None:intergenic | 20.0% |
| !! | AAATTGATTATGACATGTTT+GGG | - | chr1.1:31441318-31441337 | None:intergenic | 20.0% |
| !! | AAGAAATTTAATCAAGTGTA+AGG | - | chr1.1:31443681-31443700 | None:intergenic | 20.0% |
| !! | AATAGTAGTCAAATAAATCA+AGG | + | chr1.1:31442886-31442905 | MS.gene037909:CDS | 20.0% |
| !! | ACAACAATTTAAATCCAAAA+TGG | + | chr1.1:31443184-31443203 | MS.gene037909:CDS | 20.0% |
| !! | ATAGTAGTCAAATAAATCAA+GGG | + | chr1.1:31442887-31442906 | MS.gene037909:CDS | 20.0% |
| !! | ATTATCAACTTTAAACTTGA+TGG | - | chr1.1:31445575-31445594 | None:intergenic | 20.0% |
| !! | GAGTAATCTATATATGAATA+TGG | - | chr1.1:31443290-31443309 | None:intergenic | 20.0% |
| !! | GTCAATTATTCTATTAACTA+AGG | + | chr1.1:31443830-31443849 | MS.gene037909:intron | 20.0% |
| !! | TAGAAAAAACATCAACTATA+CGG | + | chr1.1:31442385-31442404 | MS.gene037909:intron | 20.0% |
| !! | TATGGCTGAAATATATTATT+TGG | + | chr1.1:31441401-31441420 | MS.gene037909:intron | 20.0% |
| !! | TTTCAAAACTAATTCTTCAT+TGG | - | chr1.1:31441643-31441662 | None:intergenic | 20.0% |
| !!! | ACCATTTTTTAACTTCTTTT+CGG | + | chr1.1:31444085-31444104 | MS.gene037909:intron | 20.0% |
| !!! | ATCGAATTCAAGTTATATTT+TGG | + | chr1.1:31443638-31443657 | MS.gene037909:intron | 20.0% |
| !!! | TGAGATGAAATTGATTTTAT+TGG | - | chr1.1:31444366-31444385 | None:intergenic | 20.0% |
| !!! | TTTTGCATCTATATATAGTA+TGG | - | chr1.1:31443474-31443493 | None:intergenic | 20.0% |
| ! | AATAGTTTACAAACCTTTGT+GGG | - | chr1.1:31442235-31442254 | None:intergenic | 25.0% |
| ! | AATATAGCAATGAGATTATG+AGG | + | chr1.1:31442112-31442131 | MS.gene037909:intron | 25.0% |
| ! | AATATTTATGCAGGCTATTA+TGG | + | chr1.1:31444116-31444135 | MS.gene037909:intron | 25.0% |
| ! | ACCGAAAAGAAGTTAAAAAA+TGG | - | chr1.1:31444089-31444108 | None:intergenic | 25.0% |
| ! | AGAAAAAACATCAACTATAC+GGG | + | chr1.1:31442386-31442405 | MS.gene037909:intron | 25.0% |
| ! | AGAATCAGAAATGTAATATC+AGG | - | chr1.1:31441593-31441612 | None:intergenic | 25.0% |
| ! | AGAATTAAGATTATGGTCTA+TGG | + | chr1.1:31442754-31442773 | MS.gene037909:intron | 25.0% |
| ! | AGGTAATAGTTGAAAAAACA+TGG | - | chr1.1:31444566-31444585 | None:intergenic | 25.0% |
| ! | AGTTGAATACCATAAGTAAT+TGG | - | chr1.1:31441722-31441741 | None:intergenic | 25.0% |
| ! | ATAACTTCAGTCTTGAAAAT+AGG | - | chr1.1:31443162-31443181 | None:intergenic | 25.0% |
| ! | ATGTATCAAGTTCATGATTA+AGG | - | chr1.1:31444596-31444615 | None:intergenic | 25.0% |
| ! | CAGATTAAAACAATGAGATA+TGG | - | chr1.1:31444223-31444242 | None:intergenic | 25.0% |
| ! | CGATCAAATCAAATATGATA+TGG | + | chr1.1:31441383-31441402 | MS.gene037909:intron | 25.0% |
| ! | CTATGTATTGCTTATCATAA+CGG | + | chr1.1:31444803-31444822 | MS.gene037909:CDS | 25.0% |
| ! | GAAATTGATTATGACATGTT+TGG | - | chr1.1:31441319-31441338 | None:intergenic | 25.0% |
| ! | GAATCAGAAATGTAATATCA+GGG | - | chr1.1:31441592-31441611 | None:intergenic | 25.0% |
| ! | TAGTAGTCAAATAAATCAAG+GGG | + | chr1.1:31442888-31442907 | MS.gene037909:CDS | 25.0% |
| ! | TATAATTTCCCTATGTGTTT+AGG | + | chr1.1:31444635-31444654 | MS.gene037909:intron | 25.0% |
| ! | TCAAAACACTCAATAAGTAA+TGG | - | chr1.1:31443349-31443368 | None:intergenic | 25.0% |
| ! | TGTATGCAGAATTAAGATTA+TGG | + | chr1.1:31442747-31442766 | MS.gene037909:intron | 25.0% |
| !! | AGTCAGAATAATTTTAGATG+GGG | + | chr1.1:31442322-31442341 | MS.gene037909:intron | 25.0% |
| !! | CAGTCAGAATAATTTTAGAT+GGG | + | chr1.1:31442321-31442340 | MS.gene037909:intron | 25.0% |
| !! | CATTTGATTGGTTATTCTTA+AGG | - | chr1.1:31445118-31445137 | None:intergenic | 25.0% |
| !! | CTATTTAAAATGACCTGAAA+TGG | + | chr1.1:31441866-31441885 | MS.gene037909:intron | 25.0% |
| !! | GTTATTATGGATCATAGTTT+TGG | + | chr1.1:31444449-31444468 | MS.gene037909:intron | 25.0% |
| !! | GTTCTGAATAATATTTATGC+AGG | + | chr1.1:31444107-31444126 | MS.gene037909:intron | 25.0% |
| !! | TAACATTTTATGATTAACCG+AGG | + | chr1.1:31442272-31442291 | MS.gene037909:intron | 25.0% |
| !! | TAATCCATTATCACTGTTTT+TGG | + | chr1.1:31440839-31440858 | MS.gene037909:intron | 25.0% |
| !! | TCAGTCAGAATAATTTTAGA+TGG | + | chr1.1:31442320-31442339 | MS.gene037909:intron | 25.0% |
| !! | TGAATTCTTTTTCCTGAAAA+GGG | + | chr1.1:31441427-31441446 | MS.gene037909:intron | 25.0% |
| !! | TTAATTTTCTCTATCCATTC+CGG | - | chr1.1:31442030-31442049 | None:intergenic | 25.0% |
| !! | TTCTTTATTATAGGTTCTGA+AGG | + | chr1.1:31443696-31443715 | MS.gene037909:intron | 25.0% |
| !! | TTTAATTTCTTTCTCTATGC+AGG | + | chr1.1:31443318-31443337 | MS.gene037909:intron | 25.0% |
| !! | TTTATTGACTACATATCTAG+TGG | + | chr1.1:31443763-31443782 | MS.gene037909:CDS | 25.0% |
| !! | TTTTACAAAATCAATGAAGC+AGG | - | chr1.1:31441046-31441065 | None:intergenic | 25.0% |
| !! | TTTTCTAACAAGAATTTAGC+AGG | - | chr1.1:31442372-31442391 | None:intergenic | 25.0% |
| !!! | ATGCTAGACTTATTTTACAA+AGG | + | chr1.1:31444307-31444326 | MS.gene037909:intron | 25.0% |
| !!! | CTCATTGTTTTAATCTGAAT+GGG | + | chr1.1:31444226-31444245 | MS.gene037909:CDS | 25.0% |
| !!! | CTCTGTTATTTTTAGTACAA+TGG | + | chr1.1:31444277-31444296 | MS.gene037909:intron | 25.0% |
| !!! | GAAATTGATTTTATTGGAGA+AGG | - | chr1.1:31444360-31444379 | None:intergenic | 25.0% |
| !!! | TCTCATTGTTTTAATCTGAA+TGG | + | chr1.1:31444225-31444244 | MS.gene037909:CDS | 25.0% |
| !!! | TCTTTATTATAGGTTCTGAA+GGG | + | chr1.1:31443697-31443716 | MS.gene037909:intron | 25.0% |
| !!! | TGATTTTTTCAGTTTACTGT+TGG | - | chr1.1:31443518-31443537 | None:intergenic | 25.0% |
| !!! | TTTTGAAATTAACCCTTTTC+AGG | - | chr1.1:31441442-31441461 | None:intergenic | 25.0% |
| AAGCTATACCAAGAGAAAAA+AGG | + | chr1.1:31443553-31443572 | MS.gene037909:CDS | 30.0% | |
| ACAAGTGATAGAGGTTATTA+TGG | + | chr1.1:31444436-31444455 | MS.gene037909:intron | 30.0% | |
| ACCAACTATAAGAATCGATA+AGG | - | chr1.1:31445220-31445239 | None:intergenic | 30.0% | |
| ACCTGCCAAAAATACAATAA+TGG | - | chr1.1:31445708-31445727 | None:intergenic | 30.0% | |
| ACTCTTGATATCCTTAGAAA+AGG | - | chr1.1:31443117-31443136 | None:intergenic | 30.0% | |
| AGAACATATAAGATGAAGCT+AGG | - | chr1.1:31443029-31443048 | None:intergenic | 30.0% | |
| ATAACCTCTATCACTTGTAA+TGG | - | chr1.1:31444434-31444453 | None:intergenic | 30.0% | |
| ATAACTGGTCCAAATAAAGT+GGG | - | chr1.1:31444726-31444745 | None:intergenic | 30.0% | |
| ATCGTCATGAAATCTTGAAT+GGG | - | chr1.1:31444062-31444081 | None:intergenic | 30.0% | |
| CAAACCAAAAACAGTGATAA+TGG | - | chr1.1:31440846-31440865 | None:intergenic | 30.0% | |
| CAACTATAAGAATCGATAAG+GGG | - | chr1.1:31445218-31445237 | None:intergenic | 30.0% | |
| CATGGTGATATAAGTTTCTT+AGG | - | chr1.1:31444548-31444567 | None:intergenic | 30.0% | |
| CCAACTATAAGAATCGATAA+GGG | - | chr1.1:31445219-31445238 | None:intergenic | 30.0% | |
| CCTGCCAAAAATACAATAAT+GGG | - | chr1.1:31445707-31445726 | None:intergenic | 30.0% | |
| CTGCCAAAAATACAATAATG+GGG | - | chr1.1:31445706-31445725 | None:intergenic | 30.0% | |
| CTTCATTGGCAAAAATACTT+TGG | - | chr1.1:31441629-31441648 | None:intergenic | 30.0% | |
| GAAAGAAAGCAACAAAATGA+GGG | - | chr1.1:31442170-31442189 | None:intergenic | 30.0% | |
| GAATACCATAAGTAATTGGA+AGG | - | chr1.1:31441718-31441737 | None:intergenic | 30.0% | |
| GAATAGTTTACAAACCTTTG+TGG | - | chr1.1:31442236-31442255 | None:intergenic | 30.0% | |
| TATATATGTCCAGCTTCAAA+TGG | + | chr1.1:31443902-31443921 | MS.gene037909:intron | 30.0% | |
| TCGGTTAAATTCATACCAAA+AGG | + | chr1.1:31443970-31443989 | MS.gene037909:CDS | 30.0% | |
| TGAAAGAAAGCAACAAAATG+AGG | - | chr1.1:31442171-31442190 | None:intergenic | 30.0% | |
| TGCTAAGGAAAAGAAACTTA+GGG | - | chr1.1:31445289-31445308 | None:intergenic | 30.0% | |
| TGGATTTGAACTAAACTTCT+TGG | + | chr1.1:31443783-31443802 | MS.gene037909:CDS | 30.0% | |
| TGTAAAGCCTAAAGATGTTT+AGG | - | chr1.1:31443442-31443461 | None:intergenic | 30.0% | |
| TGTGGATCAATATTGTGAAA+AGG | + | chr1.1:31443729-31443748 | MS.gene037909:CDS | 30.0% | |
| TGTTTAGCCTAAACATCTTT+AGG | + | chr1.1:31443432-31443451 | MS.gene037909:intron | 30.0% | |
| TTACTTTGTACTTCTCTCAT+GGG | - | chr1.1:31445454-31445473 | None:intergenic | 30.0% | |
| TTCATGATTAAGGAGTAAGA+AGG | - | chr1.1:31444586-31444605 | None:intergenic | 30.0% | |
| TTTACAAAACTAACGAAGCA+CGG | - | chr1.1:31440914-31440933 | None:intergenic | 30.0% | |
| ! | AGTGCTGTTATATGATGAAA+GGG | - | chr1.1:31444778-31444797 | None:intergenic | 30.0% |
| ! | CTGAATTCTTTTTCCTGAAA+AGG | + | chr1.1:31441426-31441445 | MS.gene037909:intron | 30.0% |
| ! | GAACCCCATTATTGTATTTT+TGG | + | chr1.1:31445700-31445719 | MS.gene037909:intron | 30.0% |
| ! | GTCAGAATAATTTTAGATGG+GGG | + | chr1.1:31442323-31442342 | MS.gene037909:intron | 30.0% |
| ! | TAAGTTTCTTTTCCTTAGCA+CGG | + | chr1.1:31445289-31445308 | MS.gene037909:intron | 30.0% |
| ! | TAGTGCTGTTATATGATGAA+AGG | - | chr1.1:31444779-31444798 | None:intergenic | 30.0% |
| !! | GTTCTAAGGTTTATGATTAC+AGG | + | chr1.1:31445351-31445370 | MS.gene037909:intron | 30.0% |
| !! | TTGCATTACATCGATTTATC+CGG | + | chr1.1:31443947-31443966 | MS.gene037909:CDS | 30.0% |
| !! | TTTTCTAAGGATATCAAGAG+TGG | + | chr1.1:31443116-31443135 | MS.gene037909:CDS | 30.0% |
| !!! | ACTATACGGGTATTTTAGTT+TGG | + | chr1.1:31442399-31442418 | MS.gene037909:intron | 30.0% |
| !!! | ATTATTGTATTTTTGGCAGG+TGG | + | chr1.1:31445707-31445726 | MS.gene037909:intron | 30.0% |
| !!! | CTAGACTTATTTTACAAAGG+TGG | + | chr1.1:31444310-31444329 | MS.gene037909:intron | 30.0% |
| !!! | TATCACTGTTTTTGGTTTGT+CGG | + | chr1.1:31440847-31440866 | MS.gene037909:intron | 30.0% |
| !!! | TATGGATCATAGTTTTGGAT+TGG | + | chr1.1:31444454-31444473 | MS.gene037909:intron | 30.0% |
| !!! | TGTTTTGATTTCAATAGCAG+TGG | + | chr1.1:31443361-31443380 | MS.gene037909:CDS | 30.0% |
| AAGGAAAAGAAACTTAGGGA+AGG | - | chr1.1:31445285-31445304 | None:intergenic | 35.0% | |
| ACCTTAAGGCTTCAAAACAA+AGG | + | chr1.1:31442859-31442878 | MS.gene037909:CDS | 35.0% | |
| ACGAGTAAAGATTGTTAGCA+TGG | - | chr1.1:31445674-31445693 | None:intergenic | 35.0% | |
| AGCATGTAACTTACTTGATC+TGG | + | chr1.1:31441765-31441784 | MS.gene037909:CDS | 35.0% | |
| AGGTTTATGATTACAGGTAC+TGG | + | chr1.1:31445357-31445376 | MS.gene037909:intron | 35.0% | |
| AGTGGCAATCATGTACTTAT+CGG | + | chr1.1:31443379-31443398 | MS.gene037909:CDS | 35.0% | |
| AGTTCCATTACAAGTGATAG+AGG | + | chr1.1:31444427-31444446 | MS.gene037909:intron | 35.0% | |
| ATGAAAGCCAGAAATTGACT+AGG | - | chr1.1:31445770-31445789 | None:intergenic | 35.0% | |
| ATTTATGCAGGCTATTATGG+AGG | + | chr1.1:31444119-31444138 | MS.gene037909:intron | 35.0% | |
| ATTTGGACCAGTTATCAACA+TGG | + | chr1.1:31444731-31444750 | MS.gene037909:CDS | 35.0% | |
| CATAACGAACTGTTTGAATC+CGG | + | chr1.1:31442008-31442027 | MS.gene037909:CDS | 35.0% | |
| CTGAATGATCAAGAATTCCT+TGG | + | chr1.1:31442511-31442530 | MS.gene037909:CDS | 35.0% | |
| CTTACTTTGTACTTCTCTCA+TGG | - | chr1.1:31445455-31445474 | None:intergenic | 35.0% | |
| GAAATTTCAGAGTGATCCTA+TGG | + | chr1.1:31441927-31441946 | MS.gene037909:intron | 35.0% | |
| GAAGATCATGGACATTTGAT+TGG | - | chr1.1:31445130-31445149 | None:intergenic | 35.0% | |
| GACATTGACACATCATATCA+TGG | + | chr1.1:31442205-31442224 | MS.gene037909:CDS | 35.0% | |
| GATAACAAAGCATACTTAGC+TGG | - | chr1.1:31445317-31445336 | None:intergenic | 35.0% | |
| GATAACTGGTCCAAATAAAG+TGG | - | chr1.1:31444727-31444746 | None:intergenic | 35.0% | |
| GATCGTCATGAAATCTTGAA+TGG | - | chr1.1:31444063-31444082 | None:intergenic | 35.0% | |
| GTAAGCTCTATACTTGTCAA+TGG | + | chr1.1:31443992-31444011 | MS.gene037909:intron | 35.0% | |
| GTATATGCAAAGAAAGGAGA+CGG | + | chr1.1:31441955-31441974 | MS.gene037909:CDS | 35.0% | |
| GTGCTAAGGAAAAGAAACTT+AGG | - | chr1.1:31445290-31445309 | None:intergenic | 35.0% | |
| TAAGGCTTCAAAACAAAGGA+GGG | + | chr1.1:31442863-31442882 | MS.gene037909:CDS | 35.0% | |
| TACTTTGTACTTCTCTCATG+GGG | - | chr1.1:31445453-31445472 | None:intergenic | 35.0% | |
| TCCTACAACCTAAACACATA+GGG | - | chr1.1:31444646-31444665 | None:intergenic | 35.0% | |
| TCGATGTAATGCAAAGAATC+TGG | - | chr1.1:31443941-31443960 | None:intergenic | 35.0% | |
| TGAAAGATAGCAACCATTTC+AGG | - | chr1.1:31441882-31441901 | None:intergenic | 35.0% | |
| TGAACTAAACTTCTTGGTTG+CGG | + | chr1.1:31443789-31443808 | MS.gene037909:CDS | 35.0% | |
| TGAGCGAATAACATGTTCTA+AGG | + | chr1.1:31445337-31445356 | MS.gene037909:intron | 35.0% | |
| TGCTGGAAATTAAGACAAAG+TGG | - | chr1.1:31443213-31443232 | None:intergenic | 35.0% | |
| TGTCTTAATTTCCAGCAGTT+TGG | + | chr1.1:31443216-31443235 | MS.gene037909:CDS | 35.0% | |
| TTAAGGCTTCAAAACAAAGG+AGG | + | chr1.1:31442862-31442881 | MS.gene037909:CDS | 35.0% | |
| TTACTTTACTTCCAAACTGC+TGG | - | chr1.1:31443230-31443249 | None:intergenic | 35.0% | |
| TTAGATGGGGGTAAAATACA+TGG | + | chr1.1:31442335-31442354 | MS.gene037909:intron | 35.0% | |
| TTGGTATGAATTTAACCGAC+CGG | - | chr1.1:31443969-31443988 | None:intergenic | 35.0% | |
| ! | CAAGTATAGAGCTTACCTTT+TGG | - | chr1.1:31443988-31444007 | None:intergenic | 35.0% |
| ! | CTTGTAATGGAACTCATAGT+AGG | - | chr1.1:31444421-31444440 | None:intergenic | 35.0% |
| ! | TCGATTCTTATAGTTGGTGT+TGG | + | chr1.1:31445222-31445241 | MS.gene037909:CDS | 35.0% |
| ! | TCTCTTGGTATAGCTTTTCA+AGG | - | chr1.1:31443549-31443568 | None:intergenic | 35.0% |
| ! | TTTGGAATAAAAAGCCGTGA+CGG | + | chr1.1:31442417-31442436 | MS.gene037909:intron | 35.0% |
| ! | TTTGGCCTTCCAATTACTTA+TGG | + | chr1.1:31441710-31441729 | MS.gene037909:intron | 35.0% |
| !! | ATTACATCGATTTATCCGGT+CGG | + | chr1.1:31443951-31443970 | MS.gene037909:CDS | 35.0% |
| !! | CCCTTATCGATTCTTATAGT+TGG | + | chr1.1:31445216-31445235 | MS.gene037909:CDS | 35.0% |
| !! | TGGTTTGTTTGTATTGTGTC+TGG | + | chr1.1:31441009-31441028 | MS.gene037909:intron | 35.0% |
| !!! | AATTTGCGCCTTTTTTCTCT+TGG | - | chr1.1:31443564-31443583 | None:intergenic | 35.0% |
| !!! | CCCATTATTGTATTTTTGGC+AGG | + | chr1.1:31445704-31445723 | MS.gene037909:intron | 35.0% |
| !!! | TCCTTTGTTTTGAAGCCTTA+AGG | - | chr1.1:31442863-31442882 | None:intergenic | 35.0% |
| !!! | TGAGTTTTGGTTGCTAAGTT+TGG | + | chr1.1:31441692-31441711 | MS.gene037909:intron | 35.0% |
| AAAGAAAGGAGACGGCAAAT+TGG | + | chr1.1:31441963-31441982 | MS.gene037909:CDS | 40.0% | |
| AAAGCAACAAAATGAGGGAG+AGG | - | chr1.1:31442165-31442184 | None:intergenic | 40.0% | |
| AATCGTACATACCTCGACAT+TGG | - | chr1.1:31440817-31440836 | None:intergenic | 40.0% | |
| AATTCTGCATACAGCAGAGT+TGG | - | chr1.1:31442740-31442759 | None:intergenic | 40.0% | |
| ACAATGAGATATGGTACCTC+CGG | - | chr1.1:31444214-31444233 | None:intergenic | 40.0% | |
| ACCTCGACATTGGTAAACAA+TGG | - | chr1.1:31440807-31440826 | None:intergenic | 40.0% | |
| AGCGGTGTAGAAGAAATCAA+CGG | - | chr1.1:31440772-31440791 | None:intergenic | 40.0% | |
| ATATCAAGAGTGGTTGAGAG+TGG | + | chr1.1:31443126-31443145 | MS.gene037909:CDS | 40.0% | |
| ATATCATGGTGTTCCCACAA+AGG | + | chr1.1:31442219-31442238 | MS.gene037909:CDS | 40.0% | |
| ATGACGTGTTTGACATGTGT+TGG | + | chr1.1:31440989-31441008 | MS.gene037909:intron | 40.0% | |
| ATTGGACCAATACTGATCCT+AGG | + | chr1.1:31444472-31444491 | MS.gene037909:intron | 40.0% | |
| CTATCAGGACCCACTTTATT+TGG | + | chr1.1:31444714-31444733 | MS.gene037909:CDS | 40.0% | |
| CTCCTACAACCTAAACACAT+AGG | - | chr1.1:31444647-31444666 | None:intergenic | 40.0% | |
| GACGGCAAATTGGAAGAATT+AGG | + | chr1.1:31441973-31441992 | MS.gene037909:CDS | 40.0% | |
| GCTGTGGTATATGCAAAGAA+AGG | + | chr1.1:31441949-31441968 | MS.gene037909:CDS | 40.0% | |
| GGAACTACCTAGTCAATTTC+TGG | + | chr1.1:31445760-31445779 | MS.gene037909:CDS | 40.0% | |
| GTGGCAATCATGTACTTATC+GGG | + | chr1.1:31443380-31443399 | MS.gene037909:CDS | 40.0% | |
| TACTCCATTTCTTCACTCCT+AGG | - | chr1.1:31444492-31444511 | None:intergenic | 40.0% | |
| TATCAACATGGCTGCACAAA+TGG | + | chr1.1:31444743-31444762 | MS.gene037909:CDS | 40.0% | |
| TCAAGAAACCATAGATGCTG+TGG | + | chr1.1:31445176-31445195 | MS.gene037909:CDS | 40.0% | |
| TGAAGGATAGCTTACACAAG+TGG | - | chr1.1:31442081-31442100 | None:intergenic | 40.0% | |
| TGATAAGCAGTTTCCTGCTT+GGG | + | chr1.1:31444170-31444189 | MS.gene037909:CDS | 40.0% | |
| TGATCAAGAATTCCTTGGAG+AGG | + | chr1.1:31442516-31442535 | MS.gene037909:CDS | 40.0% | |
| TGATCCTAGGAGTGAAGAAA+TGG | + | chr1.1:31444485-31444504 | MS.gene037909:intron | 40.0% | |
| TGATCTGGACATTGCATCAA+AGG | + | chr1.1:31441780-31441799 | MS.gene037909:CDS | 40.0% | |
| TGCTTTAACCACAGCATCTA+TGG | - | chr1.1:31445187-31445206 | None:intergenic | 40.0% | |
| TGTTATCCAAGTGAGAGCAA+CGG | - | chr1.1:31442972-31442991 | None:intergenic | 40.0% | |
| TTCACTCCTAGGATCAGTAT+TGG | - | chr1.1:31444481-31444500 | None:intergenic | 40.0% | |
| TTGTGTGCGTGTGTATACTA+TGG | + | chr1.1:31442804-31442823 | MS.gene037909:intron | 40.0% | |
| TTTGCATATACCACAGCCAT+AGG | - | chr1.1:31441946-31441965 | None:intergenic | 40.0% | |
| ! | AGACAAAGTGGTCTCCATTT+TGG | - | chr1.1:31443201-31443220 | None:intergenic | 40.0% |
| ! | AGTTGTCGAAGTGTGAGTTT+TGG | + | chr1.1:31441679-31441698 | MS.gene037909:intron | 40.0% |
| ! | ATTGAATAGAGGGTGCATGA+GGG | - | chr1.1:31445829-31445848 | None:intergenic | 40.0% |
| ! | GAAGGCATAATGGAAGCTTA+TGG | + | chr1.1:31444669-31444688 | MS.gene037909:CDS | 40.0% |
| ! | GACGACCTGTAGAACTTTTT+AGG | - | chr1.1:31445402-31445421 | None:intergenic | 40.0% |
| ! | GTCATCGTGATTTTTCTTGC+AGG | + | chr1.1:31443089-31443108 | MS.gene037909:intron | 40.0% |
| ! | TATTGAATAGAGGGTGCATG+AGG | - | chr1.1:31445830-31445849 | None:intergenic | 40.0% |
| ! | TCTTGCAGGATCCTTTTCTA+AGG | + | chr1.1:31443103-31443122 | MS.gene037909:intron | 40.0% |
| ! | TGTAGGAGTTGAAGGCATAA+TGG | + | chr1.1:31444659-31444678 | MS.gene037909:CDS | 40.0% |
| ! | TTGTTGGTTGTTGCAGATTC+AGG | - | chr1.1:31440741-31440760 | None:intergenic | 40.0% |
| !! | CTGTAGAACTTTTTAGGCGA+CGG | - | chr1.1:31445396-31445415 | None:intergenic | 40.0% |
| !! | GTTTAGGTTGTAGGAGTTGA+AGG | + | chr1.1:31444651-31444670 | MS.gene037909:intron | 40.0% |
| !! | TCCCTATGTGTTTAGGTTGT+AGG | + | chr1.1:31444642-31444661 | MS.gene037909:intron | 40.0% |
| AAACTTCACCAACACCGTCA+CGG | - | chr1.1:31442434-31442453 | None:intergenic | 45.0% | |
| AAAGCAGCGAAAGAAGCAGT+AGG | + | chr1.1:31440705-31440724 | MS.gene037909:CDS | 45.0% | |
| AACTGTCTCCTCAGCATGAA+TGG | - | chr1.1:31442920-31442939 | None:intergenic | 45.0% | |
| AATGTCCATGATCTTCCCAC+AGG | + | chr1.1:31445134-31445153 | MS.gene037909:intron | 45.0% | |
| ACACCTCTGATCATAAGCGT+CGG | - | chr1.1:31441106-31441125 | None:intergenic | 45.0% | |
| ACGTCATCGATCAGTAGTGT+CGG | - | chr1.1:31440976-31440995 | None:intergenic | 45.0% | |
| AGATTGTGACCAAACCAAGC+AGG | + | chr1.1:31442830-31442849 | MS.gene037909:intron | 45.0% | |
| ATAAAAAGCCGTGACGGTGT+TGG | + | chr1.1:31442423-31442442 | MS.gene037909:intron | 45.0% | |
| ATCAACGGCGTCATTGTTGT+TGG | - | chr1.1:31440757-31440776 | None:intergenic | 45.0% | |
| ATCCATCCATGAAGCATGGA+CGG | - | chr1.1:31441180-31441199 | None:intergenic | 45.0% | |
| ATGACCACCAGTCACAAACA+CGG | - | chr1.1:31441155-31441174 | None:intergenic | 45.0% | |
| ATGCAGGCTATTATGGAGGT+TGG | + | chr1.1:31444123-31444142 | MS.gene037909:intron | 45.0% | |
| CAAGCAGGAGCTTAACCTTA+AGG | + | chr1.1:31442845-31442864 | MS.gene037909:CDS | 45.0% | |
| CAATGAGATATGGTACCTCC+GGG | - | chr1.1:31444213-31444232 | None:intergenic | 45.0% | |
| CAATGGCTGAAAACCTTGAG+CGG | - | chr1.1:31440790-31440809 | None:intergenic | 45.0% | |
| CAGACATCACAGACACAACA+CGG | - | chr1.1:31440888-31440907 | None:intergenic | 45.0% | |
| CGAACTGTTTGAATCCGGAA+TGG | + | chr1.1:31442013-31442032 | MS.gene037909:CDS | 45.0% | |
| CGTCGCCTAAAAAGTTCTAC+AGG | + | chr1.1:31445394-31445413 | MS.gene037909:CDS | 45.0% | |
| CTGATAAGCAGTTTCCTGCT+TGG | + | chr1.1:31444169-31444188 | MS.gene037909:CDS | 45.0% | |
| CTGTAACAACTCCATCCTGT+GGG | - | chr1.1:31445152-31445171 | None:intergenic | 45.0% | |
| CTTAAGGTTAAGCTCCTGCT+TGG | - | chr1.1:31442847-31442866 | None:intergenic | 45.0% | |
| GATAAGCAGTTTCCTGCTTG+GGG | + | chr1.1:31444171-31444190 | MS.gene037909:CDS | 45.0% | |
| GATTTCTTCTACACCGCTCA+AGG | + | chr1.1:31440774-31440793 | MS.gene037909:CDS | 45.0% | |
| GCCATTGTTTACCAATGTCG+AGG | + | chr1.1:31440803-31440822 | MS.gene037909:CDS | 45.0% | |
| GGATTTGGAGGAAAGATACC+CGG | + | chr1.1:31444192-31444211 | MS.gene037909:CDS | 45.0% | |
| GGCAATTACCATTCATGCTG+AGG | + | chr1.1:31442909-31442928 | MS.gene037909:CDS | 45.0% | |
| GTATACACACGCACACAAAC+AGG | - | chr1.1:31442802-31442821 | None:intergenic | 45.0% | |
| TACAGGTAGAACTCATGCCT+CGG | - | chr1.1:31442292-31442311 | None:intergenic | 45.0% | |
| TATCTTCCGTTGCTCTCACT+TGG | + | chr1.1:31442963-31442982 | MS.gene037909:CDS | 45.0% | |
| TCACATCCATCCATGAAGCA+TGG | - | chr1.1:31441184-31441203 | None:intergenic | 45.0% | |
| TCTGAAGGGTCAACTCTTTG+TGG | + | chr1.1:31443711-31443730 | MS.gene037909:CDS | 45.0% | |
| TCTGACTGAGAAAGCAGTAC+AGG | - | chr1.1:31442309-31442328 | None:intergenic | 45.0% | |
| TCTGTAACAACTCCATCCTG+TGG | - | chr1.1:31445153-31445172 | None:intergenic | 45.0% | |
| TGCAAAGAATCTGGCTGTTG+AGG | - | chr1.1:31443932-31443951 | None:intergenic | 45.0% | |
| TTGGTTGCGGTAGATTTCAC+TGG | + | chr1.1:31443802-31443821 | MS.gene037909:CDS | 45.0% | |
| TTTCTCACCTCAGAGCTAGT+TGG | - | chr1.1:31444255-31444274 | None:intergenic | 45.0% | |
| ! | CTCTGTTGTGCAAGCTCTTT+TGG | + | chr1.1:31445736-31445755 | MS.gene037909:CDS | 45.0% |
| ! | GGCTAGTTGCACTTTATCAG+AGG | + | chr1.1:31442537-31442556 | MS.gene037909:CDS | 45.0% |
| ! | TGAGGACTTCCATTTGAAGC+TGG | - | chr1.1:31443914-31443933 | None:intergenic | 45.0% |
| ! | TGTTGTGCAAGCTCTTTTGG+AGG | + | chr1.1:31445739-31445758 | MS.gene037909:CDS | 45.0% |
| !! | CAGGTACTGGATGCTGATAA+TGG | + | chr1.1:31445370-31445389 | MS.gene037909:intron | 45.0% |
| !! | TGTGCAGCCATGTTGATAAC+TGG | - | chr1.1:31444741-31444760 | None:intergenic | 45.0% |
| !! | TAAATAAATATTTCTTTAAT+TGG | - | chr1.1:31441500-31441519 | None:intergenic | 5.0% |
| ACACGGACTCTGACATGTGT+TGG | - | chr1.1:31441138-31441157 | None:intergenic | 50.0% | |
| ACTTAGCTGGATCCGTGCTA+AGG | - | chr1.1:31445304-31445323 | None:intergenic | 50.0% | |
| CACACGCAATGGACAAGAGA+AGG | + | chr1.1:31443597-31443616 | MS.gene037909:CDS | 50.0% | |
| CAGACACACACACATGAAGC+TGG | + | chr1.1:31442692-31442711 | MS.gene037909:intron | 50.0% | |
| CAGTTTCCTGCTTGGGGATT+TGG | + | chr1.1:31444177-31444196 | MS.gene037909:CDS | 50.0% | |
| CTTCTCTTGTCCATTGCGTG+TGG | - | chr1.1:31443599-31443618 | None:intergenic | 50.0% | |
| GGTTAAGCTCCTGCTTGGTT+TGG | - | chr1.1:31442842-31442861 | None:intergenic | 50.0% | |
| TCAAGAGTGGTTGAGAGTGG+AGG | + | chr1.1:31443129-31443148 | MS.gene037909:CDS | 50.0% | |
| TCAGAGTCCGTGTTTGTGAC+TGG | + | chr1.1:31441145-31441164 | MS.gene037909:intron | 50.0% | |
| TCAGAGTGATCCTATGGCTG+TGG | + | chr1.1:31441933-31441952 | MS.gene037909:intron | 50.0% | |
| TCATGTCCGTCCATGCTTCA+TGG | + | chr1.1:31441171-31441190 | MS.gene037909:intron | 50.0% | |
| TCCATCCTGTGGGAAGATCA+TGG | - | chr1.1:31445142-31445161 | None:intergenic | 50.0% | |
| TCCATGATCTTCCCACAGGA+TGG | + | chr1.1:31445138-31445157 | MS.gene037909:intron | 50.0% | |
| TCTTGTCCATTGCGTGTGGA+TGG | - | chr1.1:31443595-31443614 | None:intergenic | 50.0% | |
| TTACGCAGTGTCACGCTATC+AGG | + | chr1.1:31444699-31444718 | MS.gene037909:CDS | 50.0% | |
| TTTCCTCCAAATCCCCAAGC+AGG | - | chr1.1:31444186-31444205 | None:intergenic | 50.0% | |
| TTTCCTGCTTGGGGATTTGG+AGG | + | chr1.1:31444180-31444199 | MS.gene037909:CDS | 50.0% | |
| TTTGGAGGAAAGATACCCGG+AGG | + | chr1.1:31444195-31444214 | MS.gene037909:CDS | 50.0% | |
| ! | AAGTGCAACTAGCCTCTCCA+AGG | - | chr1.1:31442531-31442550 | None:intergenic | 50.0% |
| ! | AGAGGGTGCATGAGGGAAAT+GGG | - | chr1.1:31445822-31445841 | None:intergenic | 50.0% |
| ! | TAGAGGGTGCATGAGGGAAA+TGG | - | chr1.1:31445823-31445842 | None:intergenic | 50.0% |
| !! | AAGCGCTGATTTCACGAGCA+TGG | + | chr1.1:31445245-31445264 | MS.gene037909:CDS | 50.0% |
| GAGTCCGTGTTTGTGACTGG+TGG | + | chr1.1:31441148-31441167 | MS.gene037909:intron | 55.0% | |
| GCAGCGAAAGAAGCAGTAGG+AGG | + | chr1.1:31440708-31440727 | MS.gene037909:CDS | 55.0% | |
| GTCATGCCATCCACACGCAA+TGG | + | chr1.1:31443586-31443605 | MS.gene037909:CDS | 55.0% | |
| GTCCGTCCATGCTTCATGGA+TGG | + | chr1.1:31441175-31441194 | MS.gene037909:intron | 55.0% | |
| TGAGGGAAATGGGGAACGAG+TGG | - | chr1.1:31445812-31445831 | None:intergenic | 55.0% | |
| ! | GAGGGTGCATGAGGGAAATG+GGG | - | chr1.1:31445821-31445840 | None:intergenic | 55.0% |
| ! | GCACCGACGCTTATGATCAG+AGG | + | chr1.1:31441100-31441119 | MS.gene037909:intron | 55.0% |
| !! | CGCTGATTTCACGAGCATGG+AGG | + | chr1.1:31445248-31445267 | MS.gene037909:CDS | 55.0% |
| !! | TGGGAGTCCAACTAGCTCTG+AGG | + | chr1.1:31444245-31444264 | MS.gene037909:CDS | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.1 | gene | 31440681 | 31445850 | 31440681 | ID=MS.gene037909 |
| chr1.1 | mRNA | 31440681 | 31445850 | 31440681 | ID=MS.gene037909.t1;Parent=MS.gene037909 |
| chr1.1 | exon | 31440681 | 31440824 | 31440681 | ID=MS.gene037909.t1.exon1;Parent=MS.gene037909.t1 |
| chr1.1 | CDS | 31440681 | 31440824 | 31440681 | ID=cds.MS.gene037909.t1;Parent=MS.gene037909.t1 |
| chr1.1 | exon | 31441754 | 31441801 | 31441754 | ID=MS.gene037909.t1.exon2;Parent=MS.gene037909.t1 |
| chr1.1 | CDS | 31441754 | 31441801 | 31441754 | ID=cds.MS.gene037909.t1;Parent=MS.gene037909.t1 |
| chr1.1 | exon | 31441937 | 31442085 | 31441937 | ID=MS.gene037909.t1.exon3;Parent=MS.gene037909.t1 |
| chr1.1 | CDS | 31441937 | 31442085 | 31441937 | ID=cds.MS.gene037909.t1;Parent=MS.gene037909.t1 |
| chr1.1 | exon | 31442192 | 31442240 | 31442192 | ID=MS.gene037909.t1.exon4;Parent=MS.gene037909.t1 |
| chr1.1 | CDS | 31442192 | 31442240 | 31442192 | ID=cds.MS.gene037909.t1;Parent=MS.gene037909.t1 |
| chr1.1 | exon | 31442502 | 31442558 | 31442502 | ID=MS.gene037909.t1.exon5;Parent=MS.gene037909.t1 |
| chr1.1 | CDS | 31442502 | 31442558 | 31442502 | ID=cds.MS.gene037909.t1;Parent=MS.gene037909.t1 |
| chr1.1 | exon | 31442832 | 31443011 | 31442832 | ID=MS.gene037909.t1.exon6;Parent=MS.gene037909.t1 |
| chr1.1 | CDS | 31442832 | 31443011 | 31442832 | ID=cds.MS.gene037909.t1;Parent=MS.gene037909.t1 |
| chr1.1 | exon | 31443111 | 31443245 | 31443111 | ID=MS.gene037909.t1.exon7;Parent=MS.gene037909.t1 |
| chr1.1 | CDS | 31443111 | 31443245 | 31443111 | ID=cds.MS.gene037909.t1;Parent=MS.gene037909.t1 |
| chr1.1 | exon | 31443340 | 31443401 | 31443340 | ID=MS.gene037909.t1.exon8;Parent=MS.gene037909.t1 |
| chr1.1 | CDS | 31443340 | 31443401 | 31443340 | ID=cds.MS.gene037909.t1;Parent=MS.gene037909.t1 |
| chr1.1 | exon | 31443522 | 31443618 | 31443522 | ID=MS.gene037909.t1.exon9;Parent=MS.gene037909.t1 |
| chr1.1 | CDS | 31443522 | 31443618 | 31443522 | ID=cds.MS.gene037909.t1;Parent=MS.gene037909.t1 |
| chr1.1 | exon | 31443709 | 31443823 | 31443709 | ID=MS.gene037909.t1.exon10;Parent=MS.gene037909.t1 |
| chr1.1 | CDS | 31443709 | 31443823 | 31443709 | ID=cds.MS.gene037909.t1;Parent=MS.gene037909.t1 |
| chr1.1 | exon | 31443915 | 31443991 | 31443915 | ID=MS.gene037909.t1.exon11;Parent=MS.gene037909.t1 |
| chr1.1 | CDS | 31443915 | 31443991 | 31443915 | ID=cds.MS.gene037909.t1;Parent=MS.gene037909.t1 |
| chr1.1 | exon | 31444129 | 31444266 | 31444129 | ID=MS.gene037909.t1.exon12;Parent=MS.gene037909.t1 |
| chr1.1 | CDS | 31444129 | 31444266 | 31444129 | ID=cds.MS.gene037909.t1;Parent=MS.gene037909.t1 |
| chr1.1 | exon | 31444657 | 31444824 | 31444657 | ID=MS.gene037909.t1.exon13;Parent=MS.gene037909.t1 |
| chr1.1 | CDS | 31444657 | 31444824 | 31444657 | ID=cds.MS.gene037909.t1;Parent=MS.gene037909.t1 |
| chr1.1 | exon | 31445156 | 31445269 | 31445156 | ID=MS.gene037909.t1.exon14;Parent=MS.gene037909.t1 |
| chr1.1 | CDS | 31445156 | 31445269 | 31445156 | ID=cds.MS.gene037909.t1;Parent=MS.gene037909.t1 |
| chr1.1 | exon | 31445373 | 31445469 | 31445373 | ID=MS.gene037909.t1.exon15;Parent=MS.gene037909.t1 |
| chr1.1 | CDS | 31445373 | 31445469 | 31445373 | ID=cds.MS.gene037909.t1;Parent=MS.gene037909.t1 |
| chr1.1 | exon | 31445726 | 31445850 | 31445726 | ID=MS.gene037909.t1.exon16;Parent=MS.gene037909.t1 |
| chr1.1 | CDS | 31445726 | 31445850 | 31445726 | ID=cds.MS.gene037909.t1;Parent=MS.gene037909.t1 |
| Gene Sequence |
| Protein sequence |
