Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene000424.t1 | XP_013446943.1 | 99.5 | 579 | 3 | 0 | 1 | 579 | 1 | 579 | 0.00E+00 | 1144.8 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene000424.t1 | Q941L3 | 70.9 | 578 | 164 | 2 | 1 | 577 | 1 | 575 | 4.0e-232 | 805.4 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene000424.t1 | A0A072U553 | 99.5 | 579 | 3 | 0 | 1 | 579 | 1 | 579 | 0.0e+00 | 1144.8 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene43347 | MS.gene000424 | PPI |
| MS.gene000424 | MS.gene78320 | PPI |
| MS.gene000424 | MS.gene78319 | PPI |
| MS.gene000424 | MS.gene53726 | PPI |
| MS.gene000424 | MS.gene030511 | PPI |
| MS.gene000424 | MS.gene80471 | PPI |
| MS.gene000424 | MS.gene072429 | PPI |
| MS.gene000424 | MS.gene41325 | PPI |
| MS.gene000424 | MS.gene98925 | PPI |
| MS.gene030511 | MS.gene000424 | PPI |
| MS.gene000424 | MS.gene42007 | PPI |
| MS.gene000424 | MS.gene066539 | PPI |
| MS.gene000424 | MS.gene70112 | PPI |
| MS.gene000424 | MS.gene037909 | PPI |
| MS.gene000424 | MS.gene49772 | PPI |
| MS.gene000424 | MS.gene066540 | PPI |
| MS.gene29288 | MS.gene000424 | PPI |
| MS.gene000424 | MS.gene072428 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene000424.t1 | MTR_8g096190 | 99.482 | 579 | 3 | 0 | 1 | 579 | 1 | 579 | 0.0 | 1187 |
| MS.gene000424.t1 | MTR_8g096190 | 99.454 | 549 | 3 | 0 | 1 | 549 | 1 | 549 | 0.0 | 1125 |
| MS.gene000424.t1 | MTR_8g096190 | 98.654 | 520 | 7 | 0 | 1 | 520 | 1 | 520 | 0.0 | 1062 |
| MS.gene000424.t1 | MTR_1g048160 | 60.381 | 578 | 219 | 5 | 1 | 577 | 1 | 569 | 0.0 | 717 |
| MS.gene000424.t1 | MTR_7g114130 | 60.208 | 578 | 224 | 4 | 1 | 577 | 1 | 573 | 0.0 | 716 |
| MS.gene000424.t1 | MTR_7g114100 | 54.503 | 433 | 151 | 9 | 150 | 577 | 13 | 404 | 5.02e-148 | 433 |
| MS.gene000424.t1 | MTR_7g033100 | 32.667 | 300 | 154 | 12 | 295 | 568 | 59 | 336 | 1.21e-24 | 107 |
| MS.gene000424.t1 | MTR_3g075530 | 33.106 | 293 | 149 | 11 | 305 | 570 | 54 | 326 | 1.84e-24 | 106 |
| MS.gene000424.t1 | MTR_7g033100 | 32.441 | 299 | 156 | 11 | 295 | 568 | 59 | 336 | 2.62e-24 | 105 |
| MS.gene000424.t1 | MTR_6g021730 | 32.867 | 286 | 147 | 10 | 308 | 568 | 91 | 356 | 4.35e-24 | 106 |
| MS.gene000424.t1 | MTR_8g447220 | 31.541 | 279 | 149 | 10 | 316 | 571 | 53 | 312 | 2.47e-23 | 101 |
| MS.gene000424.t1 | MTR_8g447220 | 31.071 | 280 | 147 | 10 | 316 | 570 | 53 | 311 | 6.08e-23 | 101 |
| MS.gene000424.t1 | MTR_3g086520 | 34.375 | 256 | 124 | 11 | 337 | 568 | 119 | 354 | 1.45e-22 | 101 |
| MS.gene000424.t1 | MTR_3g086520 | 35.156 | 256 | 122 | 12 | 337 | 568 | 116 | 351 | 1.52e-22 | 101 |
| MS.gene000424.t1 | MTR_3g086520 | 34.375 | 256 | 124 | 11 | 337 | 568 | 119 | 354 | 1.61e-22 | 101 |
| MS.gene000424.t1 | MTR_3g096520 | 30.887 | 327 | 174 | 13 | 279 | 576 | 39 | 342 | 4.19e-22 | 99.8 |
| MS.gene000424.t1 | MTR_3g096520 | 30.887 | 327 | 174 | 13 | 279 | 576 | 39 | 342 | 4.46e-22 | 99.8 |
| MS.gene000424.t1 | MTR_3g096520 | 30.887 | 327 | 174 | 13 | 279 | 576 | 56 | 359 | 5.78e-22 | 99.4 |
| MS.gene000424.t1 | MTR_8g089670 | 34.766 | 256 | 123 | 11 | 337 | 568 | 126 | 361 | 8.93e-22 | 99.0 |
| MS.gene000424.t1 | MTR_6g092020 | 31.525 | 295 | 153 | 15 | 307 | 575 | 36 | 307 | 1.57e-21 | 97.4 |
| MS.gene000424.t1 | MTR_2g063843 | 31.597 | 288 | 148 | 14 | 307 | 568 | 49 | 313 | 1.98e-21 | 97.1 |
| MS.gene000424.t1 | MTR_2g063857 | 30.872 | 298 | 154 | 12 | 307 | 575 | 57 | 331 | 2.31e-21 | 97.1 |
| MS.gene000424.t1 | MTR_2g063857 | 31.058 | 293 | 146 | 12 | 307 | 568 | 57 | 324 | 3.74e-21 | 95.9 |
| MS.gene000424.t1 | MTR_6g092100 | 30.526 | 285 | 152 | 10 | 315 | 575 | 1 | 263 | 1.23e-20 | 93.2 |
| MS.gene000424.t1 | MTR_2g063907 | 30.502 | 259 | 132 | 10 | 343 | 575 | 81 | 317 | 1.30e-18 | 89.0 |
| MS.gene000424.t1 | MTR_7g081160 | 35.359 | 181 | 89 | 8 | 345 | 508 | 16 | 185 | 1.85e-12 | 70.5 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene000424.t1 | AT5G61910 | 70.934 | 578 | 164 | 2 | 1 | 577 | 769 | 1343 | 0.0 | 832 |
| MS.gene000424.t1 | AT5G61900 | 70.934 | 578 | 164 | 2 | 1 | 577 | 1 | 575 | 0.0 | 829 |
| MS.gene000424.t1 | AT5G61900 | 70.934 | 578 | 164 | 2 | 1 | 577 | 1 | 575 | 0.0 | 829 |
| MS.gene000424.t1 | AT5G07300 | 68.056 | 576 | 183 | 1 | 1 | 575 | 1 | 576 | 0.0 | 813 |
| MS.gene000424.t1 | AT1G08860 | 60.377 | 583 | 220 | 6 | 1 | 577 | 1 | 578 | 0.0 | 713 |
| MS.gene000424.t1 | AT1G67800 | 35.271 | 258 | 123 | 9 | 337 | 570 | 87 | 324 | 2.39e-28 | 118 |
| MS.gene000424.t1 | AT1G67800 | 35.271 | 258 | 123 | 9 | 337 | 570 | 87 | 324 | 2.39e-28 | 118 |
| MS.gene000424.t1 | AT1G67800 | 35.271 | 258 | 123 | 9 | 337 | 570 | 87 | 324 | 2.39e-28 | 118 |
| MS.gene000424.t1 | AT1G67800 | 35.271 | 258 | 123 | 9 | 337 | 570 | 87 | 324 | 2.39e-28 | 118 |
| MS.gene000424.t1 | AT1G67800 | 35.271 | 258 | 123 | 9 | 337 | 570 | 107 | 344 | 3.40e-28 | 118 |
| MS.gene000424.t1 | AT1G67800 | 35.271 | 258 | 123 | 9 | 337 | 570 | 107 | 344 | 3.87e-28 | 117 |
| MS.gene000424.t1 | AT5G14420 | 33.333 | 291 | 149 | 10 | 303 | 568 | 81 | 351 | 1.05e-25 | 110 |
| MS.gene000424.t1 | AT5G14420 | 33.333 | 291 | 149 | 10 | 303 | 568 | 81 | 351 | 1.05e-25 | 110 |
| MS.gene000424.t1 | AT5G14420 | 33.333 | 291 | 149 | 10 | 303 | 568 | 81 | 351 | 1.05e-25 | 110 |
| MS.gene000424.t1 | AT5G14420 | 33.333 | 291 | 149 | 10 | 303 | 568 | 81 | 351 | 1.05e-25 | 110 |
| MS.gene000424.t1 | AT3G01650 | 32.414 | 290 | 145 | 10 | 310 | 568 | 116 | 385 | 5.39e-24 | 105 |
| MS.gene000424.t1 | AT3G01650 | 32.414 | 290 | 145 | 10 | 310 | 568 | 116 | 385 | 5.39e-24 | 105 |
| MS.gene000424.t1 | AT1G79380 | 30.605 | 281 | 153 | 12 | 316 | 573 | 52 | 313 | 4.56e-21 | 96.3 |
| MS.gene000424.t1 | AT5G63970 | 31.061 | 264 | 139 | 9 | 337 | 577 | 31 | 274 | 2.65e-19 | 90.5 |
| MS.gene000424.t1 | AT5G63970 | 31.061 | 264 | 139 | 9 | 337 | 577 | 31 | 274 | 2.65e-19 | 90.5 |
Find 116 sgRNAs with CRISPR-Local
Find 0 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTTGCATAAAGAACCATTAT+TGG | 0.170610 | 4.3:-7182223 | None:intergenic |
| AGTACAGTTTGTTCCATTTC+GGG | 0.198239 | 4.3:+7192508 | MS.gene000424:CDS |
| CTTACTCTTTGGTATGAATT+TGG | 0.198746 | 4.3:-7187972 | None:intergenic |
| CGATTTCCTACGTGGGGATT+TGG | 0.249110 | 4.3:+7188111 | MS.gene000424:CDS |
| TTAGAAGAACAACAATTTCT+TGG | 0.262270 | 4.3:+7183418 | MS.gene000424:CDS |
| TAGTACAGTTTGTTCCATTT+CGG | 0.270483 | 4.3:+7192507 | MS.gene000424:CDS |
| TTGCATTATATTGATCCTTC+AGG | 0.316018 | 4.3:+7187945 | MS.gene000424:CDS |
| GGGATTTGAATTGAACTTCA+TGG | 0.330327 | 4.3:+7186352 | MS.gene000424:CDS |
| GTATCAAAAGTTGTGGAAAA+TGG | 0.333423 | 4.3:+7184038 | MS.gene000424:CDS |
| AAGTATTCAATATACTTTCC+TGG | 0.337996 | 4.3:+7186316 | MS.gene000424:CDS |
| TCTTTACATGACTAGAGATT+TGG | 0.338099 | 4.3:-7192704 | None:intergenic |
| ACTTTCCTGGATTACTTGGC+TGG | 0.341165 | 4.3:+7186329 | MS.gene000424:CDS |
| GAGCTGGAGAAGCTCTATTC+TGG | 0.347750 | 4.3:+7186115 | MS.gene000424:CDS |
| GCCGGTGGCCGCACGGCAAT+CGG | 0.351066 | 4.3:+7180488 | MS.gene000424:CDS |
| AATGGAAAACATGATTTGTT+GGG | 0.354279 | 4.3:+7185984 | MS.gene000424:CDS |
| GATACTCAGGTGTACAGATT+TGG | 0.359256 | 4.3:+7183886 | MS.gene000424:CDS |
| TCAATATAATGCAAAGAATC+TGG | 0.363902 | 4.3:-7187936 | None:intergenic |
| ATATACTTTCCTGGATTACT+TGG | 0.364628 | 4.3:+7186325 | MS.gene000424:CDS |
| TCCCATTGTTTCAACTTGAA+TGG | 0.386734 | 4.3:+7188159 | MS.gene000424:CDS |
| GTGTACAGATTTGGAATATA+GGG | 0.392511 | 4.3:+7183895 | MS.gene000424:CDS |
| CAATGGAAAACATGATTTGT+TGG | 0.408884 | 4.3:+7185983 | MS.gene000424:CDS |
| GCGTCGTTGGAAGTGTTTGC+CGG | 0.413329 | 4.3:-7180536 | None:intergenic |
| GGTGTACAGATTTGGAATAT+AGG | 0.414115 | 4.3:+7183894 | MS.gene000424:CDS |
| GCCGATTGCCGTGCGGCCAC+CGG | 0.417940 | 4.3:-7180489 | None:intergenic |
| TTCTTACCGTGATTATCAAC+AGG | 0.419735 | 4.3:-7188428 | None:intergenic |
| CTACTTTGAACATCCCGAAA+TGG | 0.420882 | 4.3:-7192521 | None:intergenic |
| TTCCACCATTTGCTACAGAT+TGG | 0.430209 | 4.3:-7188392 | None:intergenic |
| ATAATGGTTCTTTATGCAAA+AGG | 0.434192 | 4.3:+7182226 | MS.gene000424:CDS |
| ACCATTTGCTACAGATTGGC+TGG | 0.436179 | 4.3:-7188388 | None:intergenic |
| GCAGACATCTCTGGTGGAGC+TGG | 0.441893 | 4.3:+7186099 | MS.gene000424:CDS |
| TGATCGAGATGTGCTCTCTA+AGG | 0.450912 | 4.3:+7180735 | MS.gene000424:CDS |
| CAGAAAACTGCAGACATCTC+TGG | 0.451157 | 4.3:+7186090 | MS.gene000424:intron |
| TCCATTCAAGTTGAAACAAT+GGG | 0.454390 | 4.3:-7188160 | None:intergenic |
| GATAGGCTTGAAAGTTCATC+TGG | 0.456547 | 4.3:+7192464 | MS.gene000424:CDS |
| TTTGGAGCACGACCGATTGA+TGG | 0.458957 | 4.3:+7188129 | MS.gene000424:CDS |
| GAAGTTATCGACGGCGTCGT+TGG | 0.460192 | 4.3:-7180549 | None:intergenic |
| TGCCGGAGGTCTACAGAATC+CGG | 0.465617 | 4.3:+7180517 | MS.gene000424:CDS |
| CGTGCGGCCACCGGCGACAT+CGG | 0.465913 | 4.3:-7180480 | None:intergenic |
| CTGCTTAACGTTTCTCTCGC+AGG | 0.467436 | 4.3:+7188321 | MS.gene000424:CDS |
| CTTTCCTGGATTACTTGGCT+GGG | 0.475384 | 4.3:+7186330 | MS.gene000424:CDS |
| CGATGTCGCCGGTGGCCGCA+CGG | 0.476914 | 4.3:+7180481 | MS.gene000424:CDS |
| ACGGCAATCGGCGGAACTGC+CGG | 0.479741 | 4.3:+7180500 | MS.gene000424:CDS |
| CTCCTCCTACGCCAACGATA+AGG | 0.479761 | 4.3:-7192269 | None:intergenic |
| TTGCAGGTAGAAGGCATTCA+AGG | 0.481279 | 4.3:+7188273 | MS.gene000424:intron |
| TTTCCTGGATTACTTGGCTG+GGG | 0.488293 | 4.3:+7186331 | MS.gene000424:CDS |
| AGACAAGATTCTACCAGGTC+TGG | 0.488863 | 4.3:+7183791 | MS.gene000424:CDS |
| TGCCGGATTCTGTAGACCTC+CGG | 0.489032 | 4.3:-7180519 | None:intergenic |
| ATTGCAGCATTATTTATGAC+AGG | 0.495261 | 4.3:-7188360 | None:intergenic |
| ATCCTTATCGTTGGCGTAGG+AGG | 0.496936 | 4.3:+7192267 | MS.gene000424:CDS |
| TGTTGTTTACCAGCTTCAAA+TGG | 0.499401 | 4.3:+7187900 | MS.gene000424:intron |
| AATGGAGCACTTGAGGAACT+TGG | 0.502480 | 4.3:+7182253 | MS.gene000424:CDS |
| AGGAGCTGATTTCAAAGAGA+TGG | 0.503459 | 4.3:+7192287 | MS.gene000424:CDS |
| CCAACGATAAGGATTGATAA+TGG | 0.504163 | 4.3:-7192258 | None:intergenic |
| GCTGTAGAGTGATCCAATAA+TGG | 0.504399 | 4.3:+7182210 | MS.gene000424:intron |
| TGGATGCAGACAAAGGAGAT+AGG | 0.507223 | 4.3:+7192447 | MS.gene000424:CDS |
| TGGAGTACCTGTAAAATCAA+TGG | 0.509634 | 4.3:-7186378 | None:intergenic |
| GCCAGCCAATCTGTAGCAAA+TGG | 0.513378 | 4.3:+7188387 | MS.gene000424:CDS |
| AAGCTCTATTCTGGTGGCCA+AGG | 0.515420 | 4.3:+7186124 | MS.gene000424:CDS |
| TTTATTAGTATCAAAAGTTG+TGG | 0.517406 | 4.3:+7184031 | MS.gene000424:CDS |
| TGCTACAACTTCAATAGCAA+TGG | 0.517499 | 4.3:+7185966 | MS.gene000424:CDS |
| AAGTTGAAACAATGGGAGAC+AGG | 0.519091 | 4.3:-7188153 | None:intergenic |
| CCATTATCAATCCTTATCGT+TGG | 0.521967 | 4.3:+7192258 | MS.gene000424:CDS |
| GGCAATTATTGAGGTTGGAG+AGG | 0.522341 | 4.3:+7188062 | MS.gene000424:intron |
| TTCCTGGATTACTTGGCTGG+GGG | 0.531776 | 4.3:+7186332 | MS.gene000424:CDS |
| TTCCATTCAAGTTGAAACAA+TGG | 0.534177 | 4.3:-7188161 | None:intergenic |
| AATTGCTGCTCCGATGTCGC+CGG | 0.549086 | 4.3:+7180470 | MS.gene000424:CDS |
| AATTCAAAACTACTTCTGTC+CGG | 0.552466 | 4.3:-7182276 | None:intergenic |
| TATGAATTTGGCCGTCCTGA+AGG | 0.556160 | 4.3:-7187960 | None:intergenic |
| AAAATTTGTCCACAAATAGT+CGG | 0.556612 | 4.3:-7186289 | None:intergenic |
| TGAGAATCATGACCCACGGC+AGG | 0.557508 | 4.3:-7186166 | None:intergenic |
| GGGTCATGATTCTCAGACCA+AGG | 0.557519 | 4.3:+7186174 | MS.gene000424:CDS |
| TGGGAGACAGGACCATCAAT+CGG | 0.559133 | 4.3:-7188141 | None:intergenic |
| CTTTGTCCTGTTGATAATCA+CGG | 0.566143 | 4.3:+7188422 | MS.gene000424:CDS |
| TCAATCCTTATCGTTGGCGT+AGG | 0.573889 | 4.3:+7192264 | MS.gene000424:CDS |
| CGATCTGAGAGAAGAGACCT+TGG | 0.574746 | 4.3:-7180589 | None:intergenic |
| TGCTGCTCCGATGTCGCCGG+TGG | 0.582433 | 4.3:+7180473 | MS.gene000424:CDS |
| GGTGGCCGCACGGCAATCGG+CGG | 0.582485 | 4.3:+7180491 | MS.gene000424:CDS |
| ATGGAAAACATGATTTGTTG+GGG | 0.584941 | 4.3:+7185985 | MS.gene000424:CDS |
| AGAACAACAATTTCTTGGTG+AGG | 0.589436 | 4.3:+7183423 | MS.gene000424:CDS |
| GACAAGCGATTTCCTACGTG+GGG | 0.590517 | 4.3:+7188105 | MS.gene000424:CDS |
| TACTCAGACAAGATTCTACC+AGG | 0.591903 | 4.3:+7183786 | MS.gene000424:CDS |
| AGATGCACTTGTTAAAGCAT+CGG | 0.592040 | 4.3:+7192230 | MS.gene000424:CDS |
| TACATGACTAGAGATTTGGT+TGG | 0.595044 | 4.3:-7192700 | None:intergenic |
| TGAATTCGTTGAGTCCGACA+TGG | 0.595147 | 4.3:+7182293 | MS.gene000424:CDS |
| CTACTAGGATGGAGTTGTGA+CGG | 0.599974 | 4.3:+7192191 | MS.gene000424:intron |
| TGTTCAACAAGTAGGAAGCA+AGG | 0.601240 | 4.3:+7184136 | MS.gene000424:CDS |
| TATAATGCAAAGAATCTGGA+AGG | 0.602030 | 4.3:-7187932 | None:intergenic |
| TTCAAGTCTCGTGGCTACCA+AGG | 0.609125 | 4.3:+7180572 | MS.gene000424:CDS |
| GAGCACTTGAGGAACTTGGC+CGG | 0.609390 | 4.3:+7182257 | MS.gene000424:CDS |
| AGCTGATTTCAAAGAGATGG+AGG | 0.615204 | 4.3:+7192290 | MS.gene000424:CDS |
| CTACAGTAGAGTTGATACTC+AGG | 0.615621 | 4.3:+7183873 | MS.gene000424:CDS |
| CAGACAAGCGATTTCCTACG+TGG | 0.619290 | 4.3:+7188103 | MS.gene000424:CDS |
| CAGATCTTGGATGCAGACAA+AGG | 0.620101 | 4.3:+7192440 | MS.gene000424:intron |
| GTTTCACAACGCAGACGTGA+AGG | 0.620590 | 4.3:+7182484 | MS.gene000424:CDS |
| AAAACTGCAGACATCTCTGG+TGG | 0.621038 | 4.3:+7186093 | MS.gene000424:CDS |
| TTGTAGCACTCTATTAACAA+AGG | 0.621510 | 4.3:-7185951 | None:intergenic |
| GTTTGTTTAGTAATCCATGT+CGG | 0.622631 | 4.3:-7182307 | None:intergenic |
| CGATAAGGATTGATAATGGT+AGG | 0.628743 | 4.3:-7192254 | None:intergenic |
| AGAATGATCACAATCCAACA+TGG | 0.632845 | 4.3:+7184096 | MS.gene000424:CDS |
| CTGGAGAAGCTCTATTCTGG+TGG | 0.643477 | 4.3:+7186118 | MS.gene000424:CDS |
| AGGCATTCAAGGAATCATGA+TGG | 0.645806 | 4.3:+7188284 | MS.gene000424:CDS |
| GATAACTTCTTCAAGTCTCG+TGG | 0.649983 | 4.3:+7180563 | MS.gene000424:CDS |
| AGCCAATCTGTAGCAAATGG+TGG | 0.650165 | 4.3:+7188390 | MS.gene000424:CDS |
| GGTCTGAGAATCATGACCCA+CGG | 0.650774 | 4.3:-7186170 | None:intergenic |
| AGGTCTCTTCTCTCAGATCG+AGG | 0.653280 | 4.3:+7180592 | MS.gene000424:CDS |
| GGCAACTTGTGCATTATCTG+AGG | 0.654797 | 4.3:+7183444 | MS.gene000424:CDS |
| GCAATCGGCGGAACTGCCGG+AGG | 0.657783 | 4.3:+7180503 | MS.gene000424:CDS |
| AGACAAGCGATTTCCTACGT+GGG | 0.662700 | 4.3:+7188104 | MS.gene000424:CDS |
| ATTATATTGATCCTTCAGGA+CGG | 0.664600 | 4.3:+7187949 | MS.gene000424:CDS |
| ATTTGAATTGAACTTCATGG+TGG | 0.674358 | 4.3:+7186355 | MS.gene000424:CDS |
| GTGTATGCTGAGGAATGTGT+TGG | 0.678518 | 4.3:+7183842 | MS.gene000424:CDS |
| CAGTTCCGCCGATTGCCGTG+CGG | 0.691284 | 4.3:-7180496 | None:intergenic |
| AGACTTGAAGAAGTTATCGA+CGG | 0.701794 | 4.3:-7180558 | None:intergenic |
| GAAGCTCAAAGTGTATGCTG+AGG | 0.705846 | 4.3:+7183832 | MS.gene000424:CDS |
| CGTGCTCCAAATCCCCACGT+AGG | 0.721272 | 4.3:-7188117 | None:intergenic |
| TGGAAGCAATACTTACTGTG+AGG | 0.795076 | 4.3:+7188179 | MS.gene000424:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.3 | gene | 7180464 | 7192715 | 7180464 | ID=MS.gene000424 |
| chr4.3 | mRNA | 7180464 | 7192715 | 7180464 | ID=MS.gene000424.t1;Parent=MS.gene000424 |
| chr4.3 | exon | 7180464 | 7180613 | 7180464 | ID=MS.gene000424.t1.exon1;Parent=MS.gene000424.t1 |
| chr4.3 | CDS | 7180464 | 7180613 | 7180464 | ID=cds.MS.gene000424.t1;Parent=MS.gene000424.t1 |
| chr4.3 | exon | 7180709 | 7180756 | 7180709 | ID=MS.gene000424.t1.exon2;Parent=MS.gene000424.t1 |
| chr4.3 | CDS | 7180709 | 7180756 | 7180709 | ID=cds.MS.gene000424.t1;Parent=MS.gene000424.t1 |
| chr4.3 | exon | 7182217 | 7182365 | 7182217 | ID=MS.gene000424.t1.exon3;Parent=MS.gene000424.t1 |
| chr4.3 | CDS | 7182217 | 7182365 | 7182217 | ID=cds.MS.gene000424.t1;Parent=MS.gene000424.t1 |
| chr4.3 | exon | 7182457 | 7182505 | 7182457 | ID=MS.gene000424.t1.exon4;Parent=MS.gene000424.t1 |
| chr4.3 | CDS | 7182457 | 7182505 | 7182457 | ID=cds.MS.gene000424.t1;Parent=MS.gene000424.t1 |
| chr4.3 | exon | 7183409 | 7183465 | 7183409 | ID=MS.gene000424.t1.exon5;Parent=MS.gene000424.t1 |
| chr4.3 | CDS | 7183409 | 7183465 | 7183409 | ID=cds.MS.gene000424.t1;Parent=MS.gene000424.t1 |
| chr4.3 | exon | 7183749 | 7183934 | 7183749 | ID=MS.gene000424.t1.exon6;Parent=MS.gene000424.t1 |
| chr4.3 | CDS | 7183749 | 7183934 | 7183749 | ID=cds.MS.gene000424.t1;Parent=MS.gene000424.t1 |
| chr4.3 | exon | 7184023 | 7184157 | 7184023 | ID=MS.gene000424.t1.exon7;Parent=MS.gene000424.t1 |
| chr4.3 | CDS | 7184023 | 7184157 | 7184023 | ID=cds.MS.gene000424.t1;Parent=MS.gene000424.t1 |
| chr4.3 | exon | 7185945 | 7186006 | 7185945 | ID=MS.gene000424.t1.exon8;Parent=MS.gene000424.t1 |
| chr4.3 | CDS | 7185945 | 7186006 | 7185945 | ID=cds.MS.gene000424.t1;Parent=MS.gene000424.t1 |
| chr4.3 | exon | 7186093 | 7186195 | 7186093 | ID=MS.gene000424.t1.exon9;Parent=MS.gene000424.t1 |
| chr4.3 | CDS | 7186093 | 7186195 | 7186093 | ID=cds.MS.gene000424.t1;Parent=MS.gene000424.t1 |
| chr4.3 | exon | 7186278 | 7186392 | 7186278 | ID=MS.gene000424.t1.exon10;Parent=MS.gene000424.t1 |
| chr4.3 | CDS | 7186278 | 7186392 | 7186278 | ID=cds.MS.gene000424.t1;Parent=MS.gene000424.t1 |
| chr4.3 | exon | 7187913 | 7187989 | 7187913 | ID=MS.gene000424.t1.exon11;Parent=MS.gene000424.t1 |
| chr4.3 | CDS | 7187913 | 7187989 | 7187913 | ID=cds.MS.gene000424.t1;Parent=MS.gene000424.t1 |
| chr4.3 | exon | 7188063 | 7188200 | 7188063 | ID=MS.gene000424.t1.exon12;Parent=MS.gene000424.t1 |
| chr4.3 | CDS | 7188063 | 7188200 | 7188063 | ID=cds.MS.gene000424.t1;Parent=MS.gene000424.t1 |
| chr4.3 | exon | 7188279 | 7188443 | 7188279 | ID=MS.gene000424.t1.exon13;Parent=MS.gene000424.t1 |
| chr4.3 | CDS | 7188279 | 7188443 | 7188279 | ID=cds.MS.gene000424.t1;Parent=MS.gene000424.t1 |
| chr4.3 | exon | 7192198 | 7192311 | 7192198 | ID=MS.gene000424.t1.exon14;Parent=MS.gene000424.t1 |
| chr4.3 | CDS | 7192198 | 7192311 | 7192198 | ID=cds.MS.gene000424.t1;Parent=MS.gene000424.t1 |
| chr4.3 | exon | 7192443 | 7192539 | 7192443 | ID=MS.gene000424.t1.exon15;Parent=MS.gene000424.t1 |
| chr4.3 | CDS | 7192443 | 7192539 | 7192443 | ID=cds.MS.gene000424.t1;Parent=MS.gene000424.t1 |
| chr4.3 | exon | 7192621 | 7192715 | 7192621 | ID=MS.gene000424.t1.exon16;Parent=MS.gene000424.t1 |
| chr4.3 | CDS | 7192621 | 7192715 | 7192621 | ID=cds.MS.gene000424.t1;Parent=MS.gene000424.t1 |
| Gene Sequence |
| Protein sequence |
