Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene038238.t1 | XP_024639199.1 | 97.1 | 242 | 6 | 1 | 1 | 242 | 1 | 241 | 5.90E-128 | 466.8 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene038238.t1 | Q9SS37 | 56.7 | 231 | 96 | 3 | 10 | 240 | 14 | 240 | 1.4e-72 | 274.2 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene038238.t1 | G7KD07 | 97.1 | 242 | 6 | 1 | 1 | 242 | 49 | 289 | 4.3e-128 | 466.8 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene028160 | MS.gene038238 | PPI |
| MS.gene08330 | MS.gene038238 | PPI |
| MS.gene34943 | MS.gene038238 | PPI |
| MS.gene35007 | MS.gene038238 | PPI |
| MS.gene023287 | MS.gene038238 | PPI |
| MS.gene028158 | MS.gene038238 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene038238.t1 | MTR_5g090340 | 97.107 | 242 | 6 | 1 | 1 | 242 | 46 | 286 | 3.62e-174 | 481 |
| MS.gene038238.t1 | MTR_5g090340 | 97.107 | 242 | 6 | 1 | 1 | 242 | 49 | 289 | 3.74e-174 | 481 |
| MS.gene038238.t1 | MTR_3g449880 | 65.217 | 230 | 78 | 1 | 1 | 230 | 1 | 228 | 1.58e-111 | 320 |
| MS.gene038238.t1 | MTR_3g449880 | 68.023 | 172 | 53 | 1 | 59 | 230 | 37 | 206 | 1.19e-84 | 251 |
| MS.gene038238.t1 | MTR_8g099060 | 47.418 | 213 | 107 | 2 | 30 | 239 | 42 | 252 | 1.04e-68 | 212 |
| MS.gene038238.t1 | MTR_8g028450 | 44.286 | 210 | 111 | 2 | 34 | 239 | 53 | 260 | 3.42e-62 | 196 |
| MS.gene038238.t1 | MTR_1g099500 | 40.306 | 196 | 115 | 2 | 42 | 237 | 50 | 243 | 3.68e-54 | 175 |
| MS.gene038238.t1 | MTR_1g109630 | 36.181 | 199 | 115 | 4 | 43 | 239 | 10 | 198 | 3.12e-40 | 137 |
| MS.gene038238.t1 | MTR_3g062910 | 32.979 | 188 | 124 | 1 | 41 | 228 | 45 | 230 | 9.23e-34 | 122 |
| MS.gene038238.t1 | MTR_4g014700 | 33.163 | 196 | 129 | 1 | 41 | 236 | 5 | 198 | 1.67e-29 | 110 |
| MS.gene038238.t1 | MTR_5g090440 | 88.679 | 53 | 6 | 0 | 191 | 243 | 9 | 61 | 1.95e-27 | 100 |
| MS.gene038238.t1 | MTR_6g012460 | 31.111 | 180 | 122 | 1 | 60 | 239 | 14 | 191 | 6.59e-27 | 103 |
| MS.gene038238.t1 | MTR_5g018250 | 30.939 | 181 | 123 | 1 | 55 | 235 | 29 | 207 | 1.27e-23 | 95.1 |
| MS.gene038238.t1 | MTR_1g107445 | 33.511 | 188 | 123 | 1 | 50 | 237 | 9 | 194 | 1.48e-23 | 94.7 |
| MS.gene038238.t1 | MTR_5g018190 | 33.108 | 148 | 97 | 1 | 63 | 210 | 284 | 429 | 1.68e-18 | 84.3 |
| MS.gene038238.t1 | MTR_5g018080 | 33.566 | 143 | 93 | 1 | 59 | 201 | 15 | 155 | 1.23e-17 | 77.8 |
| MS.gene038238.t1 | MTR_6g012460 | 33.835 | 133 | 86 | 1 | 60 | 192 | 14 | 144 | 3.87e-17 | 77.8 |
| MS.gene038238.t1 | MTR_5g018110 | 33.333 | 144 | 94 | 1 | 62 | 205 | 344 | 485 | 3.76e-15 | 74.7 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene038238.t1 | AT3G10260 | 56.710 | 231 | 96 | 3 | 10 | 240 | 14 | 240 | 1.98e-97 | 285 |
| MS.gene038238.t1 | AT3G10260 | 56.710 | 231 | 96 | 3 | 10 | 240 | 14 | 240 | 1.98e-97 | 285 |
| MS.gene038238.t1 | AT3G10260 | 56.710 | 231 | 96 | 3 | 10 | 240 | 34 | 260 | 4.27e-97 | 285 |
| MS.gene038238.t1 | AT2G46170 | 45.098 | 204 | 110 | 1 | 34 | 237 | 43 | 244 | 6.17e-66 | 205 |
| MS.gene038238.t1 | AT3G61560 | 44.118 | 204 | 112 | 1 | 34 | 237 | 43 | 244 | 2.02e-64 | 201 |
| MS.gene038238.t1 | AT3G61560 | 44.118 | 204 | 112 | 1 | 34 | 237 | 43 | 244 | 2.02e-64 | 201 |
| MS.gene038238.t1 | AT1G64090 | 40.758 | 211 | 119 | 2 | 33 | 239 | 38 | 246 | 1.47e-58 | 186 |
| MS.gene038238.t1 | AT4G23630 | 39.899 | 198 | 117 | 1 | 42 | 239 | 72 | 267 | 5.69e-58 | 185 |
| MS.gene038238.t1 | AT4G23630 | 39.899 | 198 | 117 | 1 | 42 | 239 | 72 | 267 | 5.69e-58 | 185 |
| MS.gene038238.t1 | AT4G11220 | 37.374 | 198 | 122 | 1 | 42 | 239 | 68 | 263 | 2.80e-57 | 183 |
| MS.gene038238.t1 | AT5G41600 | 41.089 | 202 | 113 | 3 | 42 | 239 | 51 | 250 | 8.79e-56 | 179 |
| MS.gene038238.t1 | AT1G64090 | 38.222 | 225 | 117 | 3 | 35 | 239 | 40 | 262 | 1.32e-54 | 177 |
| MS.gene038238.t1 | AT3G18260 | 38.191 | 199 | 121 | 1 | 41 | 239 | 21 | 217 | 6.78e-50 | 163 |
| MS.gene038238.t1 | AT4G01230 | 38.916 | 203 | 119 | 1 | 35 | 237 | 46 | 243 | 7.70e-50 | 164 |
| MS.gene038238.t1 | AT3G61560 | 45.570 | 158 | 84 | 1 | 34 | 191 | 43 | 198 | 1.22e-47 | 157 |
| MS.gene038238.t1 | AT4G01230 | 37.931 | 203 | 119 | 2 | 35 | 237 | 46 | 241 | 1.63e-46 | 155 |
| MS.gene038238.t1 | AT2G46170 | 41.912 | 136 | 77 | 1 | 34 | 169 | 43 | 176 | 1.14e-35 | 125 |
| MS.gene038238.t1 | AT3G10915 | 30.348 | 201 | 138 | 1 | 37 | 237 | 19 | 217 | 1.06e-34 | 124 |
| MS.gene038238.t1 | AT3G10915 | 29.808 | 208 | 144 | 1 | 29 | 236 | 36 | 241 | 1.60e-34 | 124 |
| MS.gene038238.t1 | AT3G10915 | 30.198 | 202 | 138 | 2 | 37 | 237 | 19 | 218 | 6.09e-33 | 119 |
| MS.gene038238.t1 | AT2G15280 | 33.158 | 190 | 125 | 1 | 47 | 236 | 2 | 189 | 1.20e-32 | 118 |
| MS.gene038238.t1 | AT1G68230 | 33.161 | 193 | 121 | 3 | 50 | 240 | 22 | 208 | 4.82e-28 | 106 |
| MS.gene038238.t1 | AT3G10915 | 27.232 | 224 | 138 | 3 | 37 | 237 | 19 | 240 | 1.54e-27 | 106 |
| MS.gene038238.t1 | AT3G10915 | 28.415 | 183 | 129 | 1 | 54 | 236 | 4 | 184 | 1.03e-26 | 102 |
| MS.gene038238.t1 | AT3G19460 | 31.073 | 177 | 120 | 1 | 51 | 227 | 14 | 188 | 1.06e-26 | 102 |
| MS.gene038238.t1 | AT3G19460 | 31.073 | 177 | 120 | 1 | 51 | 227 | 14 | 188 | 1.06e-26 | 102 |
| MS.gene038238.t1 | AT3G19460 | 31.073 | 177 | 120 | 1 | 51 | 227 | 14 | 188 | 1.06e-26 | 102 |
| MS.gene038238.t1 | AT3G10915 | 28.652 | 178 | 125 | 1 | 59 | 236 | 8 | 183 | 1.72e-26 | 102 |
| MS.gene038238.t1 | AT3G54120 | 28.708 | 209 | 142 | 3 | 36 | 243 | 1 | 203 | 6.84e-22 | 90.1 |
| MS.gene038238.t1 | AT3G19460 | 27.103 | 214 | 114 | 5 | 51 | 227 | 14 | 222 | 3.54e-20 | 86.3 |
| MS.gene038238.t1 | AT3G19460 | 27.103 | 214 | 114 | 5 | 51 | 227 | 14 | 222 | 3.54e-20 | 86.3 |
| MS.gene038238.t1 | AT1G68230 | 33.793 | 145 | 88 | 3 | 50 | 192 | 22 | 160 | 4.67e-17 | 76.3 |
| MS.gene038238.t1 | AT3G10915 | 31.200 | 125 | 84 | 1 | 42 | 166 | 24 | 146 | 7.53e-17 | 75.9 |
| MS.gene038238.t1 | AT2G23640 | 24.713 | 174 | 129 | 1 | 61 | 234 | 18 | 189 | 7.03e-15 | 71.2 |
| MS.gene038238.t1 | AT2G15280 | 23.684 | 190 | 104 | 2 | 47 | 236 | 2 | 150 | 1.22e-11 | 61.6 |
Find 59 sgRNAs with CRISPR-Local
Find 116 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGCAGGTTGTAGTATGCTTA+TGG | 0.271495 | 5.4:-71381031 | MS.gene038238:intron |
| TCATGTCTGTACAGTTTCTT+TGG | 0.274156 | 5.4:-71381725 | MS.gene038238:CDS |
| CTGAGGTTAACCGTGGTTTA+AGG | 0.278401 | 5.4:-71381489 | MS.gene038238:CDS |
| TATCCAAGCTTCTTTCCTTT+GGG | 0.285834 | 5.4:+71380392 | None:intergenic |
| TATAATTAAGCCATTCAAAA+AGG | 0.291332 | 5.4:+71381784 | None:intergenic |
| CAGTATAGGAAGGTGGATTC+TGG | 0.314712 | 5.4:-71380431 | MS.gene038238:CDS |
| CTATCCAAGCTTCTTTCCTT+TGG | 0.317711 | 5.4:+71380391 | None:intergenic |
| TATTAACAAAGAAATCTTTC+GGG | 0.323201 | 5.4:+71381530 | None:intergenic |
| CAGAATCCACCTTCCTATAC+TGG | 0.327594 | 5.4:+71380432 | None:intergenic |
| GTCCAAACAGTTTATTGAAC+TGG | 0.330990 | 5.4:+71382016 | None:intergenic |
| TAACCGCTGCAACAACTATA+TGG | 0.340621 | 5.4:-71381809 | MS.gene038238:CDS |
| ATATTAACAAAGAAATCTTT+CGG | 0.374090 | 5.4:+71381529 | None:intergenic |
| CTGGTGCTGTGATTGGGAAC+TGG | 0.386885 | 5.4:-71381007 | MS.gene038238:CDS |
| ATGCTTCCGGCGTGTTTAGC+AGG | 0.400253 | 5.4:-71381698 | MS.gene038238:intron |
| TCCCAGTTCAATAAACTGTT+TGG | 0.402640 | 5.4:-71382018 | MS.gene038238:CDS |
| TTATGGGCTGGTGCTGTGAT+TGG | 0.407728 | 5.4:-71381014 | MS.gene038238:CDS |
| TTTCTTTGGACAAATGCTTC+CGG | 0.425537 | 5.4:-71381711 | MS.gene038238:CDS |
| GCCATCAAAAGCTCCTCGTT+TGG | 0.430625 | 5.4:-71381557 | MS.gene038238:CDS |
| TCATACCTTTCGTAGAGAAC+CGG | 0.437296 | 5.4:+71380503 | None:intergenic |
| GCAGGTTGTAGTATGCTTAT+GGG | 0.447620 | 5.4:-71381030 | MS.gene038238:intron |
| TATGGGCTGGTGCTGTGATT+GGG | 0.451379 | 5.4:-71381013 | MS.gene038238:CDS |
| ATCCAAGCTTCTTTCCTTTG+GGG | 0.455010 | 5.4:+71380393 | None:intergenic |
| GAGCTAGGCATAGAAGTGAT+AGG | 0.455942 | 5.4:+71381757 | None:intergenic |
| CTTCAAAATGTTTCATGTGG+AGG | 0.472512 | 5.4:-71381463 | MS.gene038238:CDS |
| AAAGCTTCTGAACACCTTCG+TGG | 0.484982 | 5.4:-71382106 | MS.gene038238:CDS |
| AGTTGTTGCAGCGGTTAAAA+CGG | 0.489432 | 5.4:+71381815 | None:intergenic |
| ATCCCCAAAGGAAAGAAGCT+TGG | 0.496516 | 5.4:-71380395 | MS.gene038238:CDS |
| ATCAGATGCAAAACCAGTAT+AGG | 0.499744 | 5.4:-71380445 | MS.gene038238:CDS |
| CTTGGCGAGAGGCAAAAGTC+TGG | 0.502330 | 5.4:-71382078 | MS.gene038238:CDS |
| TTTGAAGAAACCTTAAACCA+CGG | 0.502721 | 5.4:+71381479 | None:intergenic |
| AGTTTGCCTTCACTTCTACA+TGG | 0.505250 | 5.4:+71382049 | None:intergenic |
| TGTTGCTGCACATACACTCC+CGG | 0.528499 | 5.4:-71380522 | MS.gene038238:CDS |
| TCCAAACAGTTTATTGAACT+GGG | 0.530900 | 5.4:+71382017 | None:intergenic |
| GTTAATATTGCAACTGCGGT+TGG | 0.530904 | 5.4:-71381514 | MS.gene038238:CDS |
| GATTGATAACTTCGTGTACA+AGG | 0.536766 | 5.4:-71380474 | MS.gene038238:CDS |
| AACACCTTCGTGGAAACACT+TGG | 0.537056 | 5.4:-71382096 | MS.gene038238:CDS |
| TTTCTTCAAAATGTTTCATG+TGG | 0.542392 | 5.4:-71381466 | MS.gene038238:CDS |
| CCACCTAAAATATGGTGCAC+AGG | 0.562386 | 5.4:+71381985 | None:intergenic |
| GTTGTAGTATGCTTATGGGC+TGG | 0.564353 | 5.4:-71381026 | MS.gene038238:CDS |
| CATACCTTTCGTAGAGAACC+GGG | 0.565792 | 5.4:+71380504 | None:intergenic |
| TAGCTGCTGATGTCATGTTG+TGG | 0.573484 | 5.4:-71381860 | MS.gene038238:CDS |
| TGCAACTGCGGTTGGTACTG+AGG | 0.575677 | 5.4:-71381506 | MS.gene038238:CDS |
| CTTTGTTAATATTGCAACTG+CGG | 0.576367 | 5.4:-71381518 | MS.gene038238:CDS |
| TTCATTCCATGTAGAAGTGA+AGG | 0.576828 | 5.4:-71382055 | MS.gene038238:CDS |
| CACTCCCGGTTCTCTACGAA+AGG | 0.578629 | 5.4:-71380508 | MS.gene038238:CDS |
| CTGCTGATGTCATGTTGTGG+AGG | 0.578920 | 5.4:-71381857 | MS.gene038238:CDS |
| TTTCTTTCCGTAGTGACAGG+AGG | 0.604290 | 5.4:-71381579 | MS.gene038238:intron |
| TGCTGATGTCATGTTGTGGA+GGG | 0.606274 | 5.4:-71381856 | MS.gene038238:CDS |
| ACATGACAAGAACAAGAGCT+AGG | 0.612406 | 5.4:+71381742 | None:intergenic |
| CTCGCCAAGTGTTTCCACGA+AGG | 0.615062 | 5.4:+71382092 | None:intergenic |
| GATGCAAAACCAGTATAGGA+AGG | 0.625408 | 5.4:-71380441 | MS.gene038238:CDS |
| GCAAAACCAGTATAGGAAGG+TGG | 0.628367 | 5.4:-71380438 | MS.gene038238:CDS |
| GAGCCATATAGTTGTTGCAG+CGG | 0.636566 | 5.4:+71381806 | None:intergenic |
| TCGTGGAAACACTTGGCGAG+AGG | 0.645330 | 5.4:-71382089 | MS.gene038238:CDS |
| TTGCTTAGCAAAATCCCCAA+AGG | 0.645417 | 5.4:-71380407 | MS.gene038238:CDS |
| GTTGGTACTGAGGTTAACCG+TGG | 0.658377 | 5.4:-71381496 | MS.gene038238:CDS |
| GAATAACCTGCTAAACACGC+CGG | 0.683282 | 5.4:+71381692 | None:intergenic |
| AAACAGTTTATTGAACTGGG+AGG | 0.721336 | 5.4:+71382020 | None:intergenic |
| TCTTTCGGGAGAACCAAACG+AGG | 0.723179 | 5.4:+71381544 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | CATTTAGATAAAAATAAAAT+AGG | + | chr5.4:71380886-71380905 | None:intergenic | 10.0% |
| !!! | TATTTAGAGATAATATTTTT+AGG | + | chr5.4:71381674-71381693 | None:intergenic | 10.0% |
| !! | ACACATGAATTAAAAAAAAT+TGG | + | chr5.4:71381371-71381390 | None:intergenic | 15.0% |
| !! | ATATTAACAAAGAAATCTTT+CGG | + | chr5.4:71380994-71381013 | None:intergenic | 15.0% |
| !!! | TATGATTTTATATTTAGAGA+CGG | - | chr5.4:71381400-71381419 | MS.gene038238:intron | 15.0% |
| !!! | TTTTTTAATTCATGTGTTTT+AGG | - | chr5.4:71381374-71381393 | MS.gene038238:intron | 15.0% |
| !! | AATAATTAGAGAAAACATCA+TGG | + | chr5.4:71381608-71381627 | None:intergenic | 20.0% |
| !! | AATGTAGTTGAAAATTTGAA+AGG | + | chr5.4:71381236-71381255 | None:intergenic | 20.0% |
| !! | ATGTAGTTGAAAATTTGAAA+GGG | + | chr5.4:71381235-71381254 | None:intergenic | 20.0% |
| !! | CAACATAATTAGAGATATAA+TGG | + | chr5.4:71381272-71381291 | None:intergenic | 20.0% |
| !! | GATTATAAATGACAAAACAA+AGG | + | chr5.4:71381130-71381149 | None:intergenic | 20.0% |
| !! | TATAATTAAGCCATTCAAAA+AGG | + | chr5.4:71380739-71380758 | None:intergenic | 20.0% |
| !! | TATTAACAAAGAAATCTTTC+GGG | + | chr5.4:71380993-71381012 | None:intergenic | 20.0% |
| !!! | GTATGTTTTAAGCATAAATA+TGG | + | chr5.4:71381152-71381171 | None:intergenic | 20.0% |
| !!! | GTTAAAACTTTGTTATGTTA+CGG | - | chr5.4:71381916-71381935 | MS.gene038238:intron | 20.0% |
| !!! | GTTTTCTCTAATTATTAAGT+TGG | - | chr5.4:71381612-71381631 | MS.gene038238:intron | 20.0% |
| !!! | TTTCATTGTCCTTTTTTAAA+AGG | - | chr5.4:71381208-71381227 | MS.gene038238:intron | 20.0% |
| ! | ACACATTGTATCAACAAAAA+AGG | + | chr5.4:71381582-71381601 | None:intergenic | 25.0% |
| ! | CTGTTGAAATAGTATTTCAT+CGG | - | chr5.4:71381709-71381728 | MS.gene038238:CDS | 25.0% |
| ! | TCCTGTAAAATCTATCATAT+TGG | - | chr5.4:71380593-71380612 | MS.gene038238:intron | 25.0% |
| ! | TGTAGTTGAAAATTTGAAAG+GGG | + | chr5.4:71381234-71381253 | None:intergenic | 25.0% |
| ! | TTGAAAAACAGAAACATTGA+CGG | - | chr5.4:71381441-71381460 | MS.gene038238:CDS | 25.0% |
| ! | TTTCTTCAAAATGTTTCATG+TGG | - | chr5.4:71381054-71381073 | MS.gene038238:intron | 25.0% |
| !! | TTTTTGTTGATACAATGTGT+TGG | - | chr5.4:71381582-71381601 | MS.gene038238:intron | 25.0% |
| !!! | CTTTGTTTTGTTATGTCTTA+AGG | - | chr5.4:71381972-71381991 | MS.gene038238:intron | 25.0% |
| !!! | TTTTTTACTGTCGTGTATAT+CGG | - | chr5.4:71381542-71381561 | MS.gene038238:CDS | 25.0% |
| CAAAAGAAGAAATTCAAGGA+TGG | + | chr5.4:71380856-71380875 | None:intergenic | 30.0% | |
| CAGACAAAAGAAGAAATTCA+AGG | + | chr5.4:71380860-71380879 | None:intergenic | 30.0% | |
| CATTGTATCAACAAAAAAGG+AGG | + | chr5.4:71381579-71381598 | None:intergenic | 30.0% | |
| CTTTGTTAATATTGCAACTG+CGG | - | chr5.4:71381002-71381021 | MS.gene038238:CDS | 30.0% | |
| GACAATGAAAAATCTCAAGA+GGG | + | chr5.4:71381198-71381217 | None:intergenic | 30.0% | |
| TCAAGAATTCTCTCTTTGTT+TGG | + | chr5.4:71381755-71381774 | None:intergenic | 30.0% | |
| TCCAAACAGTTTATTGAACT+GGG | + | chr5.4:71380506-71380525 | None:intergenic | 30.0% | |
| TTTGAAGAAACCTTAAACCA+CGG | + | chr5.4:71381044-71381063 | None:intergenic | 30.0% | |
| ! | ATTTTCCACCACCTAAAATA+TGG | + | chr5.4:71380546-71380565 | None:intergenic | 30.0% |
| ! | GATTTTATATTTAGAGACGG+AGG | - | chr5.4:71381403-71381422 | MS.gene038238:intron | 30.0% |
| ! | GCCAATATGATAGATTTTAC+AGG | + | chr5.4:71380597-71380616 | None:intergenic | 30.0% |
| AAACAGTTTATTGAACTGGG+AGG | + | chr5.4:71380503-71380522 | None:intergenic | 35.0% | |
| AACAGCAAACTCGGTTAATT+GGG | + | chr5.4:71381821-71381840 | None:intergenic | 35.0% | |
| ATCAGATGCAAAACCAGTAT+AGG | - | chr5.4:71382075-71382094 | MS.gene038238:CDS | 35.0% | |
| ATCATGCTTAAAACATCTGC+AGG | - | chr5.4:71381472-71381491 | MS.gene038238:CDS | 35.0% | |
| CTTCAAAATGTTTCATGTGG+AGG | - | chr5.4:71381057-71381076 | MS.gene038238:intron | 35.0% | |
| GGACAATGAAAAATCTCAAG+AGG | + | chr5.4:71381199-71381218 | None:intergenic | 35.0% | |
| GTCCAAACAGTTTATTGAAC+TGG | + | chr5.4:71380507-71380526 | None:intergenic | 35.0% | |
| TAACAGCAAACTCGGTTAAT+TGG | + | chr5.4:71381822-71381841 | None:intergenic | 35.0% | |
| TATCCAAGCTTCTTTCCTTT+GGG | + | chr5.4:71382131-71382150 | None:intergenic | 35.0% | |
| TCATGTCTGTACAGTTTCTT+TGG | - | chr5.4:71380795-71380814 | MS.gene038238:intron | 35.0% | |
| TCCCAGTTCAATAAACTGTT+TGG | - | chr5.4:71380502-71380521 | MS.gene038238:CDS | 35.0% | |
| TTACCACGAAACACTTAACA+AGG | + | chr5.4:71381884-71381903 | None:intergenic | 35.0% | |
| TTCATTCCATGTAGAAGTGA+AGG | - | chr5.4:71380465-71380484 | MS.gene038238:CDS | 35.0% | |
| TTTATATTTAGAGACGGAGG+TGG | - | chr5.4:71381406-71381425 | MS.gene038238:intron | 35.0% | |
| TTTCTTTGGACAAATGCTTC+CGG | - | chr5.4:71380809-71380828 | MS.gene038238:intron | 35.0% | |
| ! | AAACCTGTGCACCATATTTT+AGG | - | chr5.4:71380532-71380551 | MS.gene038238:intron | 35.0% |
| ! | CTATATGGCTCCTTTTTGAA+TGG | - | chr5.4:71380726-71380745 | MS.gene038238:intron | 35.0% |
| ! | GATTGATAACTTCGTGTACA+AGG | - | chr5.4:71382046-71382065 | MS.gene038238:CDS | 35.0% |
| !! | TGAAAGGGGCCTTTTAAAAA+AGG | + | chr5.4:71381220-71381239 | None:intergenic | 35.0% |
| ACATGACAAGAACAAGAGCT+AGG | + | chr5.4:71380781-71380800 | None:intergenic | 40.0% | |
| AGTTGTTGCAGCGGTTAAAA+CGG | + | chr5.4:71380708-71380727 | None:intergenic | 40.0% | |
| AGTTTGCCTTCACTTCTACA+TGG | + | chr5.4:71380474-71380493 | None:intergenic | 40.0% | |
| ATCCAAGCTTCTTTCCTTTG+GGG | + | chr5.4:71382130-71382149 | None:intergenic | 40.0% | |
| CTATCCAAGCTTCTTTCCTT+TGG | + | chr5.4:71382132-71382151 | None:intergenic | 40.0% | |
| CTCAAGAGGGTCCTATATTT+GGG | + | chr5.4:71381185-71381204 | None:intergenic | 40.0% | |
| GATGCAAAACCAGTATAGGA+AGG | - | chr5.4:71382079-71382098 | MS.gene038238:CDS | 40.0% | |
| GCAGGTTGTAGTATGCTTAT+GGG | - | chr5.4:71381490-71381509 | MS.gene038238:CDS | 40.0% | |
| GTTAATATTGCAACTGCGGT+TGG | - | chr5.4:71381006-71381025 | MS.gene038238:CDS | 40.0% | |
| TAACCGCTGCAACAACTATA+TGG | - | chr5.4:71380711-71380730 | MS.gene038238:intron | 40.0% | |
| TCAAGAGGGTCCTATATTTG+GGG | + | chr5.4:71381184-71381203 | None:intergenic | 40.0% | |
| TCACCTTGTTAAGTGTTTCG+TGG | - | chr5.4:71381878-71381897 | MS.gene038238:intron | 40.0% | |
| TCATACCTTTCGTAGAGAAC+CGG | + | chr5.4:71382020-71382039 | None:intergenic | 40.0% | |
| TCTCAAGAGGGTCCTATATT+TGG | + | chr5.4:71381186-71381205 | None:intergenic | 40.0% | |
| TGCAGGTTGTAGTATGCTTA+TGG | - | chr5.4:71381489-71381508 | MS.gene038238:CDS | 40.0% | |
| TTGCTTAGCAAAATCCCCAA+AGG | - | chr5.4:71382113-71382132 | MS.gene038238:CDS | 40.0% | |
| ! | TGTTCTGCTACTTGCAATGA+TGG | - | chr5.4:71381297-71381316 | MS.gene038238:intron | 40.0% |
| ! | TTGTTTCTTTCCGTAGTGAC+AGG | - | chr5.4:71380938-71380957 | MS.gene038238:intron | 40.0% |
| !! | AACCGAGTTTGCTGTTATCT+CGG | - | chr5.4:71381825-71381844 | MS.gene038238:CDS | 40.0% |
| AAAGCTTCTGAACACCTTCG+TGG | - | chr5.4:71380414-71380433 | MS.gene038238:CDS | 45.0% | |
| AACACCTTCGTGGAAACACT+TGG | - | chr5.4:71380424-71380443 | MS.gene038238:CDS | 45.0% | |
| ATCCCCAAAGGAAAGAAGCT+TGG | - | chr5.4:71382125-71382144 | MS.gene038238:CDS | 45.0% | |
| CAAGAGGGTCCTATATTTGG+GGG | + | chr5.4:71381183-71381202 | None:intergenic | 45.0% | |
| CACCGAGATAACAGCAAACT+CGG | + | chr5.4:71381830-71381849 | None:intergenic | 45.0% | |
| CAGAATCCACCTTCCTATAC+TGG | + | chr5.4:71382091-71382110 | None:intergenic | 45.0% | |
| CATACCTTTCGTAGAGAACC+GGG | + | chr5.4:71382019-71382038 | None:intergenic | 45.0% | |
| CCACCTAAAATATGGTGCAC+AGG | + | chr5.4:71380538-71380557 | None:intergenic | 45.0% | |
| CTGAGGTTAACCGTGGTTTA+AGG | - | chr5.4:71381031-71381050 | MS.gene038238:intron | 45.0% | |
| GAATAACCTGCTAAACACGC+CGG | + | chr5.4:71380831-71380850 | None:intergenic | 45.0% | |
| GAGCCATATAGTTGTTGCAG+CGG | + | chr5.4:71380717-71380736 | None:intergenic | 45.0% | |
| GAGCTAGGCATAGAAGTGAT+AGG | + | chr5.4:71380766-71380785 | None:intergenic | 45.0% | |
| GCAAAACCAGTATAGGAAGG+TGG | - | chr5.4:71382082-71382101 | MS.gene038238:CDS | 45.0% | |
| GTTGTAGTATGCTTATGGGC+TGG | - | chr5.4:71381494-71381513 | MS.gene038238:CDS | 45.0% | |
| TAGCTGCTGATGTCATGTTG+TGG | - | chr5.4:71380660-71380679 | MS.gene038238:intron | 45.0% | |
| TGCTGATGTCATGTTGTGGA+GGG | - | chr5.4:71380664-71380683 | MS.gene038238:intron | 45.0% | |
| TTTCTTTCCGTAGTGACAGG+AGG | - | chr5.4:71380941-71380960 | MS.gene038238:intron | 45.0% | |
| ! | ACCAAACGAGGAGCTTTTGA+TGG | + | chr5.4:71380967-71380986 | None:intergenic | 45.0% |
| ! | CAGTATAGGAAGGTGGATTC+TGG | - | chr5.4:71382089-71382108 | MS.gene038238:CDS | 45.0% |
| ! | GGTGTTCAGAAGCTTTTCAG+CGG | + | chr5.4:71380410-71380429 | None:intergenic | 45.0% |
| !! | CCTGTGCACCATATTTTAGG+TGG | - | chr5.4:71380535-71380554 | MS.gene038238:intron | 45.0% |
| !! | GTGCACCATATTTTAGGTGG+TGG | - | chr5.4:71380538-71380557 | MS.gene038238:intron | 45.0% |
| !! | TTTGCTGTTATCTCGGTGTG+TGG | - | chr5.4:71381832-71381851 | MS.gene038238:CDS | 45.0% |
| CTGCTGATGTCATGTTGTGG+AGG | - | chr5.4:71380663-71380682 | MS.gene038238:intron | 50.0% | |
| GCCATCAAAAGCTCCTCGTT+TGG | - | chr5.4:71380963-71380982 | MS.gene038238:intron | 50.0% | |
| TCTTTCGGGAGAACCAAACG+AGG | + | chr5.4:71380979-71380998 | None:intergenic | 50.0% | |
| TGTTGCTGCACATACACTCC+CGG | - | chr5.4:71381998-71382017 | MS.gene038238:CDS | 50.0% | |
| ! | GTTGGTACTGAGGTTAACCG+TGG | - | chr5.4:71381024-71381043 | MS.gene038238:CDS | 50.0% |
| ! | TTGATGGCCTCCTGTCACTA+CGG | + | chr5.4:71380951-71380970 | None:intergenic | 50.0% |
| !! | TATGGGCTGGTGCTGTGATT+GGG | - | chr5.4:71381507-71381526 | MS.gene038238:CDS | 50.0% |
| !! | TTATGGGCTGGTGCTGTGAT+TGG | - | chr5.4:71381506-71381525 | MS.gene038238:CDS | 50.0% |
| ATGCTTCCGGCGTGTTTAGC+AGG | - | chr5.4:71380822-71380841 | MS.gene038238:intron | 55.0% | |
| CACTCCCGGTTCTCTACGAA+AGG | - | chr5.4:71382012-71382031 | MS.gene038238:CDS | 55.0% | |
| CTACCTCCGCCCCCAAATAT+AGG | - | chr5.4:71381171-71381190 | MS.gene038238:intron | 55.0% | |
| CTCGCCAAGTGTTTCCACGA+AGG | + | chr5.4:71380431-71380450 | None:intergenic | 55.0% | |
| CTTGGCGAGAGGCAAAAGTC+TGG | - | chr5.4:71380442-71380461 | MS.gene038238:CDS | 55.0% | |
| GAGGGTCCTATATTTGGGGG+CGG | + | chr5.4:71381180-71381199 | None:intergenic | 55.0% | |
| TCGTGGAAACACTTGGCGAG+AGG | - | chr5.4:71380431-71380450 | MS.gene038238:CDS | 55.0% | |
| ! | TGCAACTGCGGTTGGTACTG+AGG | - | chr5.4:71381014-71381033 | MS.gene038238:CDS | 55.0% |
| !! | CTGGTGCTGTGATTGGGAAC+TGG | - | chr5.4:71381513-71381532 | MS.gene038238:CDS | 55.0% |
| GGTCCTATATTTGGGGGCGG+AGG | + | chr5.4:71381177-71381196 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5.4 | gene | 71380391 | 71382151 | 71380391 | ID=MS.gene038238 |
| chr5.4 | mRNA | 71380391 | 71382151 | 71380391 | ID=MS.gene038238.t1;Parent=MS.gene038238 |
| chr5.4 | exon | 71381977 | 71382151 | 71381977 | ID=MS.gene038238.t1.exon1;Parent=MS.gene038238.t1 |
| chr5.4 | CDS | 71381977 | 71382151 | 71381977 | ID=cds.MS.gene038238.t1;Parent=MS.gene038238.t1 |
| chr5.4 | exon | 71381699 | 71381879 | 71381699 | ID=MS.gene038238.t1.exon2;Parent=MS.gene038238.t1 |
| chr5.4 | CDS | 71381699 | 71381879 | 71381699 | ID=cds.MS.gene038238.t1;Parent=MS.gene038238.t1 |
| chr5.4 | exon | 71381441 | 71381588 | 71381441 | ID=MS.gene038238.t1.exon3;Parent=MS.gene038238.t1 |
| chr5.4 | CDS | 71381441 | 71381588 | 71381441 | ID=cds.MS.gene038238.t1;Parent=MS.gene038238.t1 |
| chr5.4 | exon | 71380979 | 71381048 | 71380979 | ID=MS.gene038238.t1.exon4;Parent=MS.gene038238.t1 |
| chr5.4 | CDS | 71380979 | 71381048 | 71380979 | ID=cds.MS.gene038238.t1;Parent=MS.gene038238.t1 |
| chr5.4 | exon | 71380391 | 71380548 | 71380391 | ID=MS.gene038238.t1.exon5;Parent=MS.gene038238.t1 |
| chr5.4 | CDS | 71380391 | 71380548 | 71380391 | ID=cds.MS.gene038238.t1;Parent=MS.gene038238.t1 |
| Gene Sequence |
| Protein sequence |
