Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene038353.t1 | XP_003617439.2 | 95.9 | 683 | 26 | 2 | 1 | 682 | 1 | 682 | 0.00E+00 | 1291.6 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene038353.t1 | Q9SHY2 | 76.8 | 665 | 150 | 3 | 19 | 680 | 22 | 685 | 1.0e-303 | 1043.5 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene038353.t1 | G7KD70 | 95.9 | 683 | 26 | 2 | 1 | 682 | 1 | 682 | 0.0e+00 | 1291.6 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene37726 | MS.gene038353 | PPI |
| MS.gene05216 | MS.gene038353 | PPI |
| MS.gene45566 | MS.gene038353 | PPI |
| MS.gene038353 | MS.gene57831 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene038353.t1 | MTR_5g091600 | 95.900 | 683 | 26 | 2 | 1 | 682 | 1 | 682 | 0.0 | 1292 |
| MS.gene038353.t1 | MTR_3g063490 | 86.043 | 695 | 83 | 3 | 1 | 681 | 1 | 695 | 0.0 | 1188 |
| MS.gene038353.t1 | MTR_3g063520 | 87.681 | 690 | 77 | 2 | 1 | 682 | 1 | 690 | 0.0 | 1165 |
| MS.gene038353.t1 | MTR_6g077870 | 71.512 | 681 | 184 | 5 | 6 | 680 | 34 | 710 | 0.0 | 997 |
| MS.gene038353.t1 | MTR_6g077870 | 72.376 | 543 | 146 | 3 | 141 | 680 | 8 | 549 | 0.0 | 818 |
| MS.gene038353.t1 | MTR_7g028250 | 57.951 | 654 | 264 | 6 | 27 | 673 | 30 | 679 | 0.0 | 784 |
| MS.gene038353.t1 | MTR_3g092090 | 55.188 | 665 | 287 | 5 | 6 | 667 | 7 | 663 | 0.0 | 764 |
| MS.gene038353.t1 | MTR_3g092090 | 55.046 | 654 | 283 | 5 | 6 | 656 | 7 | 652 | 0.0 | 747 |
| MS.gene038353.t1 | MTR_0312s0020 | 51.412 | 673 | 320 | 3 | 1 | 670 | 4 | 672 | 0.0 | 727 |
| MS.gene038353.t1 | MTR_1g007540 | 51.412 | 673 | 320 | 3 | 1 | 670 | 4 | 672 | 0.0 | 727 |
| MS.gene038353.t1 | MTR_1g007580 | 51.791 | 670 | 308 | 4 | 4 | 670 | 15 | 672 | 0.0 | 727 |
| MS.gene038353.t1 | MTR_1g077840 | 51.351 | 666 | 312 | 6 | 8 | 669 | 22 | 679 | 0.0 | 712 |
| MS.gene038353.t1 | MTR_5g091615 | 92.453 | 159 | 12 | 0 | 519 | 677 | 59 | 217 | 2.21e-92 | 289 |
| MS.gene038353.t1 | MTR_5g091615 | 75.862 | 58 | 13 | 1 | 1 | 58 | 1 | 57 | 2.82e-19 | 89.4 |
| MS.gene038353.t1 | MTR_1626s0010 | 51.681 | 238 | 112 | 1 | 210 | 447 | 1 | 235 | 2.34e-82 | 260 |
| MS.gene038353.t1 | MTR_0312s0050 | 48.673 | 113 | 50 | 1 | 8 | 120 | 19 | 123 | 5.22e-32 | 120 |
| MS.gene038353.t1 | MTR_2g083230 | 86.957 | 46 | 6 | 0 | 122 | 167 | 34 | 79 | 2.66e-18 | 80.9 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene038353.t1 | AT1G65730 | 75.000 | 688 | 163 | 5 | 1 | 681 | 1 | 686 | 0.0 | 1063 |
| MS.gene038353.t1 | AT3G17650 | 72.006 | 668 | 177 | 4 | 22 | 681 | 46 | 711 | 0.0 | 965 |
| MS.gene038353.t1 | AT3G17650 | 72.006 | 668 | 177 | 4 | 22 | 681 | 46 | 711 | 0.0 | 965 |
| MS.gene038353.t1 | AT1G48370 | 71.300 | 669 | 181 | 4 | 22 | 681 | 55 | 721 | 0.0 | 952 |
| MS.gene038353.t1 | AT3G27020 | 57.227 | 678 | 269 | 7 | 9 | 673 | 7 | 676 | 0.0 | 783 |
| MS.gene038353.t1 | AT1G48370 | 70.000 | 560 | 157 | 4 | 131 | 681 | 1 | 558 | 0.0 | 777 |
| MS.gene038353.t1 | AT5G53550 | 55.704 | 675 | 283 | 6 | 1 | 668 | 4 | 669 | 0.0 | 760 |
| MS.gene038353.t1 | AT5G53550 | 55.704 | 675 | 283 | 6 | 1 | 668 | 4 | 669 | 0.0 | 760 |
| MS.gene038353.t1 | AT5G53550 | 55.704 | 675 | 283 | 6 | 1 | 668 | 4 | 669 | 0.0 | 760 |
| MS.gene038353.t1 | AT5G53550 | 55.704 | 675 | 283 | 6 | 1 | 668 | 4 | 669 | 0.0 | 760 |
| MS.gene038353.t1 | AT5G53550 | 55.704 | 675 | 283 | 6 | 1 | 668 | 4 | 669 | 0.0 | 760 |
| MS.gene038353.t1 | AT5G41000 | 54.776 | 670 | 293 | 6 | 4 | 667 | 2 | 667 | 0.0 | 754 |
| MS.gene038353.t1 | AT5G24380 | 53.153 | 666 | 300 | 5 | 6 | 667 | 3 | 660 | 0.0 | 747 |
| MS.gene038353.t1 | AT4G24120 | 53.107 | 676 | 298 | 5 | 1 | 669 | 9 | 672 | 0.0 | 737 |
| MS.gene038353.t1 | AT5G41000 | 53.064 | 669 | 281 | 7 | 4 | 667 | 2 | 642 | 0.0 | 714 |
| MS.gene038353.t1 | AT5G53550 | 58.480 | 513 | 207 | 2 | 156 | 668 | 1 | 507 | 0.0 | 615 |
| MS.gene038353.t1 | AT5G41000 | 55.285 | 492 | 217 | 3 | 178 | 667 | 1 | 491 | 0.0 | 578 |
| MS.gene038353.t1 | AT5G45450 | 65.753 | 219 | 69 | 1 | 463 | 681 | 1 | 213 | 1.07e-96 | 297 |
Find 156 sgRNAs with CRISPR-Local
Find 271 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTATTTGTTGTTAGCTTTCT+TGG | 0.055871 | 5.4:+72588928 | MS.gene038353:CDS |
| GTTCTTTGCATAACTCTTAA+AGG | 0.161384 | 5.4:+72590367 | MS.gene038353:CDS |
| GGTGATGGTCTATTCAATTT+TGG | 0.178911 | 5.4:+72590340 | MS.gene038353:CDS |
| GATGAGATTTCCACTGAAAA+AGG | 0.208952 | 5.4:+72587288 | MS.gene038353:CDS |
| AATGTTTCGGCTGGGTTGTT+AGG | 0.215147 | 5.4:+72587447 | MS.gene038353:CDS |
| TGATTTGCGGAGATGGAATT+TGG | 0.227884 | 5.4:+72591280 | MS.gene038353:CDS |
| GAAGCTTGATATTGTTTATT+TGG | 0.238786 | 5.4:+72591202 | MS.gene038353:CDS |
| TACATGGTCTTCAAGGTTAC+AGG | 0.266757 | 5.4:+72590003 | MS.gene038353:CDS |
| ATGTTTGTGAGCCAAGTTAT+TGG | 0.272519 | 5.4:+72590859 | MS.gene038353:CDS |
| TTTGGAGCAGCTGTTGCTTC+TGG | 0.279659 | 5.4:+72591255 | MS.gene038353:CDS |
| TACTTGCTTCTTTGCTAGTT+TGG | 0.284398 | 5.4:-72589448 | None:intergenic |
| CCGAACAATATTAATAATTA+TGG | 0.291212 | 5.4:-72591079 | None:intergenic |
| TATTCCTTCTTTGAATGTTT+CGG | 0.296053 | 5.4:+72587434 | MS.gene038353:CDS |
| AGCGAAATATTGGTTATATA+TGG | 0.303147 | 5.4:-72589885 | None:intergenic |
| TCATTGGCAGTGCCAGCTTC+TGG | 0.308809 | 5.4:-72588868 | None:intergenic |
| GACACCACATGCTGCTAAAC+TGG | 0.314803 | 5.4:-72590755 | None:intergenic |
| ACCAATCAACAGCGAAATAT+TGG | 0.316315 | 5.4:-72589895 | None:intergenic |
| TTTACAAACTTTCCCACATT+TGG | 0.322898 | 5.4:+72589552 | MS.gene038353:CDS |
| GTATTCTCCTGTCTGGTAAA+AGG | 0.329015 | 5.4:-72587528 | None:intergenic |
| TTATTTGGCAGAAGCTTGAT+AGG | 0.342034 | 5.4:+72591217 | MS.gene038353:CDS |
| ACCAATATTTCGCTGTTGAT+TGG | 0.354272 | 5.4:+72589894 | MS.gene038353:CDS |
| AAGTAGCTTCCAATGTAAAA+TGG | 0.358086 | 5.4:-72591159 | None:intergenic |
| TCACGTCGTCGATGAGGTTC+TGG | 0.358748 | 5.4:-72587240 | None:intergenic |
| ATAGGCATAGCAATGATTCT+TGG | 0.363000 | 5.4:+72590319 | MS.gene038353:CDS |
| TGGTTATTCTACCATGCATT+TGG | 0.366728 | 5.4:+72590919 | MS.gene038353:CDS |
| CTTCTCCTTTAGCTTCTTGT+GGG | 0.366991 | 5.4:+72589488 | MS.gene038353:CDS |
| AGGGCCAAGGCTGATGCATT+TGG | 0.370325 | 5.4:+72591237 | MS.gene038353:CDS |
| GGGTTTGGTAGCTACTTGTT+TGG | 0.371080 | 5.4:+72588817 | MS.gene038353:CDS |
| GGCAGAAACAGGTTACTGTT+AGG | 0.378300 | 5.4:+72587337 | MS.gene038353:CDS |
| CCTTCTTTGAATGTTTCGGC+TGG | 0.378910 | 5.4:+72587438 | MS.gene038353:CDS |
| TGATTGGTGGAGTTCTTTCA+TGG | 0.381134 | 5.4:+72589910 | MS.gene038353:CDS |
| TACCATGCATTTGGTACTCT+TGG | 0.383561 | 5.4:+72590928 | MS.gene038353:CDS |
| AAGGAAAATCGGTTCCTTCA+TGG | 0.390439 | 5.4:+72587316 | MS.gene038353:CDS |
| TGGCTCACAAACATGGATTT+CGG | 0.390640 | 5.4:-72590850 | None:intergenic |
| GCCAATGATGTTAAGAGTCT+TGG | 0.398551 | 5.4:+72588883 | MS.gene038353:CDS |
| CTGCTTTCTTTGAGATCAGC+AGG | 0.407509 | 5.4:-72589978 | None:intergenic |
| TCTTGTGGGGTTTCTTCCAA+TGG | 0.410444 | 5.4:+72589502 | MS.gene038353:CDS |
| TTCAGTGGTTCCACTTAGAA+AGG | 0.412142 | 5.4:+72588957 | MS.gene038353:CDS |
| GATGTTAAGAGTCTTGGTTT+AGG | 0.418370 | 5.4:+72588889 | MS.gene038353:CDS |
| GGTTCCTTCATGGCAGAAAC+AGG | 0.418491 | 5.4:+72587326 | MS.gene038353:CDS |
| GATTGGTGGAGTTCTTTCAT+GGG | 0.427764 | 5.4:+72589911 | MS.gene038353:CDS |
| GACAAGAATTTCATGCAAAT+AGG | 0.427809 | 5.4:-72591345 | None:intergenic |
| AGTCACTTACTTCCTTTGAT+AGG | 0.427904 | 5.4:-72589583 | None:intergenic |
| CCATAATTATTAATATTGTT+CGG | 0.429626 | 5.4:+72591079 | MS.gene038353:CDS |
| GTAGGTGGGAGAGGAGCATT+TGG | 0.431255 | 5.4:-72590439 | None:intergenic |
| GTTGCTTCTGGTTTGATTTG+CGG | 0.432992 | 5.4:+72591267 | MS.gene038353:CDS |
| GCAGCTAATGCTAAGGTTGA+TGG | 0.437579 | 5.4:+72591372 | MS.gene038353:CDS |
| TTTACTTGTGTAGGTGGGTT+TGG | 0.439530 | 5.4:+72588802 | MS.gene038353:intron |
| TCTTCTCCTTTAGCTTCTTG+TGG | 0.441527 | 5.4:+72589487 | MS.gene038353:CDS |
| AAAAGGGTTTGAAGGAAAAT+CGG | 0.442446 | 5.4:+72587305 | MS.gene038353:CDS |
| ATGTTTCGGCTGGGTTGTTA+GGG | 0.444080 | 5.4:+72587448 | MS.gene038353:CDS |
| ACCAAGACTCTTAACATCAT+TGG | 0.446254 | 5.4:-72588884 | None:intergenic |
| CGATAGCAGTTCCAATAACT+TGG | 0.447827 | 5.4:-72590870 | None:intergenic |
| TTCACTGCTGGTGATGCTTG+TGG | 0.449951 | 5.4:+72589528 | MS.gene038353:CDS |
| CTCATGCAAGACTTCAAAAC+AGG | 0.450675 | 5.4:+72590808 | MS.gene038353:CDS |
| TGCTCCAAATGCATCAGCCT+TGG | 0.453111 | 5.4:-72591241 | None:intergenic |
| TATCGAAACATGGCAATACT+AGG | 0.453894 | 5.4:+72590991 | MS.gene038353:CDS |
| TTCACTATCGGTGCTTGGAC+AGG | 0.455104 | 5.4:+72590712 | MS.gene038353:CDS |
| GGTGTCATGTGGCCTCTCAT+TGG | 0.456041 | 5.4:+72589933 | MS.gene038353:CDS |
| TTAAGAGTCTTGGTTTAGGA+TGG | 0.456468 | 5.4:+72588893 | MS.gene038353:CDS |
| TCTGGTTTGATTTGCGGAGA+TGG | 0.456514 | 5.4:+72591273 | MS.gene038353:CDS |
| CAAGTATATTCCTGTTCCTA+TGG | 0.457463 | 5.4:+72591125 | MS.gene038353:CDS |
| CTCAAAGAAAGCAGCTTACA+TGG | 0.464152 | 5.4:+72589987 | MS.gene038353:CDS |
| AGCAGCTTACATGGTCTTCA+AGG | 0.465668 | 5.4:+72589996 | MS.gene038353:CDS |
| TTTGGTACTCTTGGTCAACC+TGG | 0.466335 | 5.4:+72590937 | MS.gene038353:CDS |
| AGGAGGGGATTTGATCTTTG+AGG | 0.467620 | 5.4:-72590498 | None:intergenic |
| CAAGTTATTGGAACTGCTAT+CGG | 0.474537 | 5.4:+72590871 | MS.gene038353:CDS |
| ATGAAGCTGAATCTCACTAC+TGG | 0.474985 | 5.4:+72587408 | MS.gene038353:CDS |
| ATCGCCATAGCCATAGGAAC+AGG | 0.477409 | 5.4:-72591135 | None:intergenic |
| TTTCGATAAACGAGTGCATA+AGG | 0.482550 | 5.4:-72590976 | None:intergenic |
| AATAACAGTATTCTCCTGTC+TGG | 0.483024 | 5.4:-72587535 | None:intergenic |
| CCATCTTCACTATCGGTGCT+TGG | 0.483234 | 5.4:+72590707 | MS.gene038353:CDS |
| CTTCTTTGAATGTTTCGGCT+GGG | 0.483708 | 5.4:+72587439 | MS.gene038353:CDS |
| CCCTCCTGGTTTGCTATCGC+AGG | 0.488906 | 5.4:+72590514 | MS.gene038353:CDS |
| ACTTGTGTTGTTGCTGCTAG+TGG | 0.489925 | 5.4:+72587561 | MS.gene038353:CDS |
| AGTTAGTGTACCTTTCTAAG+TGG | 0.497051 | 5.4:-72588967 | None:intergenic |
| AATATTGTTCGGTACTTCGT+TGG | 0.499440 | 5.4:+72591090 | MS.gene038353:CDS |
| GCAGAAACAGGTTACTGTTA+GGG | 0.499595 | 5.4:+72587338 | MS.gene038353:CDS |
| AATATTTCGCTGTTGATTGG+TGG | 0.504823 | 5.4:+72589897 | MS.gene038353:CDS |
| TAAACGAGTGCATAAGGTGC+AGG | 0.507587 | 5.4:-72590970 | None:intergenic |
| TTTGCTATTGATATGTGTGT+TGG | 0.507636 | 5.4:+72591180 | MS.gene038353:CDS |
| TTCTTTCATGGGGTGTCATG+TGG | 0.512338 | 5.4:+72589922 | MS.gene038353:CDS |
| ACTTTAGCTGGTGGAAAATG+TGG | 0.515525 | 5.4:-72590576 | None:intergenic |
| TCAAAGATCAAATCCCCTCC+TGG | 0.519522 | 5.4:+72590500 | MS.gene038353:CDS |
| CATAGGAACAGGAATATACT+TGG | 0.521944 | 5.4:-72591124 | None:intergenic |
| ATAGCCTGCGATAGCAAACC+AGG | 0.526898 | 5.4:-72590518 | None:intergenic |
| GCAAAACAAATTCCAGAAGC+TGG | 0.528010 | 5.4:+72588856 | MS.gene038353:CDS |
| AATAACTTGGCTCACAAACA+TGG | 0.530485 | 5.4:-72590857 | None:intergenic |
| ATAGGCTTCTAGACCAAATG+TGG | 0.534074 | 5.4:-72589565 | None:intergenic |
| AAAGAAGCAAGTAAAAGCAC+TGG | 0.538820 | 5.4:+72589458 | MS.gene038353:CDS |
| CCAAGCACCGATAGTGAAGA+TGG | 0.542033 | 5.4:-72590707 | None:intergenic |
| ATTCAGCTTCATCACAATGA+AGG | 0.542122 | 5.4:-72587397 | None:intergenic |
| AATGAAAGTGTAGGTGGGAG+AGG | 0.542352 | 5.4:-72590448 | None:intergenic |
| TATTCCTGTTCCTATGGCTA+TGG | 0.547446 | 5.4:+72591131 | MS.gene038353:CDS |
| GTAACCTGTTTCTGCCATGA+AGG | 0.548353 | 5.4:-72587330 | None:intergenic |
| TGATGTGATACCACTTTAGC+TGG | 0.550885 | 5.4:-72590588 | None:intergenic |
| ATGGCTGTGGACTAACAGAT+TGG | 0.552312 | 5.4:+72590656 | MS.gene038353:CDS |
| GGTTCTTCTTTGTCAAGACA+TGG | 0.553064 | 5.4:+72587469 | MS.gene038353:CDS |
| CTTTAGCTGGTGGAAAATGT+GGG | 0.554313 | 5.4:-72590575 | None:intergenic |
| GAAACCCCACAAGAAGCTAA+AGG | 0.558484 | 5.4:-72589493 | None:intergenic |
| TGAGCTGTTGCAGTACCACT+TGG | 0.560291 | 5.4:-72589393 | None:intergenic |
| ATGGCAATACTAGGTGTGGA+TGG | 0.562386 | 5.4:+72591000 | MS.gene038353:CDS |
| TGGTCCCTTGCATCGACCTA+CGG | 0.564629 | 5.4:+72590676 | MS.gene038353:CDS |
| ACAGCCATAGGCATTGCAAA+AGG | 0.566094 | 5.4:-72590641 | None:intergenic |
| TATTTGGCAGAAGCTTGATA+GGG | 0.566643 | 5.4:+72591218 | MS.gene038353:CDS |
| AATCTCATCGAGTTGTTCAT+CGG | 0.567170 | 5.4:-72587274 | None:intergenic |
| AGACAAAGTAGCACAGTCTG+AGG | 0.568806 | 5.4:+72590414 | MS.gene038353:CDS |
| GTCTAGAGCAGCTAATGCTA+AGG | 0.570538 | 5.4:+72591365 | MS.gene038353:CDS |
| AATGGTATCGCCATAGCCAT+AGG | 0.572462 | 5.4:-72591141 | None:intergenic |
| GCATTGCAAAAGGCTAGTGC+GGG | 0.573429 | 5.4:-72590631 | None:intergenic |
| AAATTAGCCATCTTCACTAT+CGG | 0.574958 | 5.4:+72590700 | MS.gene038353:CDS |
| GCAAGAGCAAGAAAAGAGCT+AGG | 0.577753 | 5.4:-72591309 | None:intergenic |
| CTCATCGAGTTGTTCATCGG+AGG | 0.577930 | 5.4:-72587271 | None:intergenic |
| GGCATTGCAAAAGGCTAGTG+CGG | 0.578668 | 5.4:-72590632 | None:intergenic |
| GCAGAAGCTTGATAGGGCCA+AGG | 0.581499 | 5.4:+72591224 | MS.gene038353:CDS |
| TCATCGAATGAAAGTGTAGG+TGG | 0.582413 | 5.4:-72590454 | None:intergenic |
| ATCTGTTAGTCCACAGCCAT+AGG | 0.582868 | 5.4:-72590653 | None:intergenic |
| CAAAACAGGTTACATGACAC+TGG | 0.583625 | 5.4:+72590822 | MS.gene038353:CDS |
| TCAACGTCACGTCGTCGATG+AGG | 0.588481 | 5.4:-72587246 | None:intergenic |
| AAACATGGCAATACTAGGTG+TGG | 0.591588 | 5.4:+72590996 | MS.gene038353:CDS |
| AAGAATTTCATGCAAATAGG+TGG | 0.591699 | 5.4:-72591342 | None:intergenic |
| CCAGCCGAAACATTCAAAGA+AGG | 0.594215 | 5.4:-72587438 | None:intergenic |
| TGCACTCGTTTATCGAAACA+TGG | 0.595881 | 5.4:+72590981 | MS.gene038353:CDS |
| TTCTCCTTTAGCTTCTTGTG+GGG | 0.598215 | 5.4:+72589489 | MS.gene038353:CDS |
| ATAGCAATGATTCTTGGTGA+TGG | 0.599500 | 5.4:+72590325 | MS.gene038353:CDS |
| TGCTTTCTTTGAGATCAGCA+GGG | 0.603921 | 5.4:-72589977 | None:intergenic |
| ATTCGATGACAAGCGCAGAA+CGG | 0.605807 | 5.4:+72590468 | MS.gene038353:CDS |
| GGTGCAGGGTATGCTGAACC+AGG | 0.606714 | 5.4:-72590955 | None:intergenic |
| ACCATGTTACTTGAGAAAGC+TGG | 0.608209 | 5.4:+72587492 | MS.gene038353:CDS |
| TTGGTCTAGAAGCCTATCAA+AGG | 0.609519 | 5.4:+72589571 | MS.gene038353:CDS |
| GACCAAGAGTACCAAATGCA+TGG | 0.613241 | 5.4:-72590930 | None:intergenic |
| ATTGGTGGAGTTCTTTCATG+GGG | 0.613889 | 5.4:+72589912 | MS.gene038353:CDS |
| CACATGCTGCTAAACTGGCT+AGG | 0.627857 | 5.4:-72590750 | None:intergenic |
| TGAAGCTGAATCTCACTACT+GGG | 0.630097 | 5.4:+72587409 | MS.gene038353:CDS |
| CTGCGATAGCAAACCAGGAG+GGG | 0.633433 | 5.4:-72590513 | None:intergenic |
| GGTGCTTGGACAGGAGCCAA+CGG | 0.634839 | 5.4:+72590721 | MS.gene038353:CDS |
| ACATGGTCTTCAAGGTTACA+GGG | 0.635841 | 5.4:+72590004 | MS.gene038353:CDS |
| ACCAGCTTTCTCAAGTAACA+TGG | 0.641017 | 5.4:-72587493 | None:intergenic |
| AAGAAGCAAGTAAAAGCACT+GGG | 0.641434 | 5.4:+72589459 | MS.gene038353:CDS |
| TTTAGCTGGTGGAAAATGTG+GGG | 0.643964 | 5.4:-72590574 | None:intergenic |
| AAACGAGTGCATAAGGTGCA+GGG | 0.645258 | 5.4:-72590969 | None:intergenic |
| TTGTCATCGAATGAAAGTGT+AGG | 0.645823 | 5.4:-72590457 | None:intergenic |
| CATCGAATGAAAGTGTAGGT+GGG | 0.652819 | 5.4:-72590453 | None:intergenic |
| TGTTACTTGAGAAAGCTGGT+TGG | 0.656408 | 5.4:+72587496 | MS.gene038353:CDS |
| CCTGCGATAGCAAACCAGGA+GGG | 0.658243 | 5.4:-72590514 | None:intergenic |
| AAAATATGCTGCAAAGTACG+AGG | 0.669730 | 5.4:-72591047 | None:intergenic |
| CTAGCCAGTTTAGCAGCATG+TGG | 0.673936 | 5.4:+72590751 | MS.gene038353:CDS |
| TAGGCTTCTAGACCAAATGT+GGG | 0.679352 | 5.4:-72589564 | None:intergenic |
| TTAGCTGGTGGAAAATGTGG+GGG | 0.686845 | 5.4:-72590573 | None:intergenic |
| ACTGGCTAGGATACCGCCGT+TGG | 0.687737 | 5.4:-72590737 | None:intergenic |
| TAGAATAACCAGAAAACACA+AGG | 0.690587 | 5.4:-72590907 | None:intergenic |
| TGTGATACCACTTTAGCTGG+TGG | 0.692393 | 5.4:-72590585 | None:intergenic |
| TTCAGATTGACATATCCAAG+TGG | 0.693932 | 5.4:+72589378 | MS.gene038353:CDS |
| GCTAGTGGAATTGCATTCAG+CGG | 0.695424 | 5.4:+72587576 | MS.gene038353:CDS |
| GCCTGCGATAGCAAACCAGG+AGG | 0.703548 | 5.4:-72590515 | None:intergenic |
| GCTTGGACAGGAGCCAACGG+CGG | 0.709931 | 5.4:+72590724 | MS.gene038353:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | CAAAATTCAAATAAATAAAA+AGG | - | chr5.4:72589098-72589117 | None:intergenic | 10.0% |
| !! | TAAATGTTAAATAAAAGAAA+AGG | - | chr5.4:72589793-72589812 | None:intergenic | 10.0% |
| !!! | TATTTATTTGAATTTTGTAT+TGG | + | chr5.4:72589101-72589120 | MS.gene038353:intron | 10.0% |
| !! | ATTAAAAAAGGATTTAACAA+AGG | + | chr5.4:72589630-72589649 | MS.gene038353:intron | 15.0% |
| !! | CCATAATTATTAATATTGTT+CGG | + | chr5.4:72591079-72591098 | MS.gene038353:CDS | 15.0% |
| !! | TATTTATTTATGTACATAAC+AGG | + | chr5.4:72589814-72589833 | MS.gene038353:intron | 15.0% |
| !! | TTCCATCATTAATAAAATAT+AGG | - | chr5.4:72589611-72589630 | None:intergenic | 15.0% |
| !! | TTTAACACAAAACATAAAAA+GGG | - | chr5.4:72587622-72587641 | None:intergenic | 15.0% |
| !!! | ATTAATGATGGAATTAAAAA+AGG | + | chr5.4:72589618-72589637 | MS.gene038353:intron | 15.0% |
| !!! | TGAATCAATTTTTAAAACAT+GGG | + | chr5.4:72589302-72589321 | MS.gene038353:intron | 15.0% |
| !!! | TTGAAATTTTGAAATTGATA+TGG | + | chr5.4:72590120-72590139 | MS.gene038353:intron | 15.0% |
| !!! | TTGAATCAATTTTTAAAACA+TGG | + | chr5.4:72589301-72589320 | MS.gene038353:intron | 15.0% |
| !! | ATTAGAAATTTAAACATGAC+AGG | + | chr5.4:72588459-72588478 | MS.gene038353:intron | 20.0% |
| !! | ATTTGTGATTTGAATTGAAT+TGG | + | chr5.4:72587681-72587700 | MS.gene038353:intron | 20.0% |
| !! | CCGAACAATATTAATAATTA+TGG | - | chr5.4:72591082-72591101 | None:intergenic | 20.0% |
| !! | CTTTAACACAAAACATAAAA+AGG | - | chr5.4:72587623-72587642 | None:intergenic | 20.0% |
| !! | TCAAAATATACTTACAAAAG+TGG | - | chr5.4:72590104-72590123 | None:intergenic | 20.0% |
| !! | TTTGTGATTTGAATTGAATT+GGG | + | chr5.4:72587682-72587701 | MS.gene038353:intron | 20.0% |
| !!! | ATTGTATTCTTTTAAACTAC+AGG | + | chr5.4:72590291-72590310 | MS.gene038353:intron | 20.0% |
| !!! | ATTTTAAAAATTGAGTCAGA+TGG | + | chr5.4:72589167-72589186 | MS.gene038353:intron | 20.0% |
| !!! | TAATCAAACAATGTATTGAT+AGG | + | chr5.4:72589002-72589021 | MS.gene038353:intron | 20.0% |
| ! | CAACGTAAAACATAGTTAAT+TGG | + | chr5.4:72590169-72590188 | MS.gene038353:intron | 25.0% |
| ! | GAAAAATAGTAGTTTCTCAT+TGG | + | chr5.4:72590142-72590161 | MS.gene038353:intron | 25.0% |
| ! | GAAGCTTGATATTGTTTATT+TGG | + | chr5.4:72591202-72591221 | MS.gene038353:CDS | 25.0% |
| ! | GATTATGATAGCTTAAGAAA+AGG | - | chr5.4:72588425-72588444 | None:intergenic | 25.0% |
| ! | TAAAACAATTGAACATGACT+TGG | + | chr5.4:72589260-72589279 | MS.gene038353:intron | 25.0% |
| ! | TATCAATAGATCTTAACTGA+AGG | + | chr5.4:72588380-72588399 | MS.gene038353:intron | 25.0% |
| ! | TATTCCTTCTTTGAATGTTT+CGG | + | chr5.4:72587434-72587453 | MS.gene038353:CDS | 25.0% |
| ! | TTAGGAGTCAACTTATTTAA+AGG | + | chr5.4:72587913-72587932 | MS.gene038353:intron | 25.0% |
| ! | TTGTGATTTGAATTGAATTG+GGG | + | chr5.4:72587683-72587702 | MS.gene038353:intron | 25.0% |
| !! | AAAATCTTGAGTTTTTGTGT+TGG | + | chr5.4:72587824-72587843 | MS.gene038353:intron | 25.0% |
| !! | AGCGAAATATTGGTTATATA+TGG | - | chr5.4:72589888-72589907 | None:intergenic | 25.0% |
| !! | CGCCTATATTTTATTAATGA+TGG | + | chr5.4:72589606-72589625 | MS.gene038353:intron | 25.0% |
| !! | TTTAAACTACAGGTTTTCAT+AGG | + | chr5.4:72590301-72590320 | MS.gene038353:intron | 25.0% |
| !!! | AGTTAATTTTGAAGCATGAT+TGG | + | chr5.4:72587939-72587958 | MS.gene038353:intron | 25.0% |
| !!! | ATTTTAAGGTATGACAAAGT+CGG | - | chr5.4:72589049-72589068 | None:intergenic | 25.0% |
| !!! | TGTTTTAAATTGATTGAACC+AGG | - | chr5.4:72589247-72589266 | None:intergenic | 25.0% |
| AAAAGGGTTTGAAGGAAAAT+CGG | + | chr5.4:72587305-72587324 | MS.gene038353:CDS | 30.0% | |
| AAATTAGCCATCTTCACTAT+CGG | + | chr5.4:72590700-72590719 | MS.gene038353:CDS | 30.0% | |
| AACCTCTATGTTCTCAATTA+TGG | + | chr5.4:72589694-72589713 | MS.gene038353:intron | 30.0% | |
| AAGAATTTCATGCAAATAGG+TGG | - | chr5.4:72591345-72591364 | None:intergenic | 30.0% | |
| AAGTAGCTTCCAATGTAAAA+TGG | - | chr5.4:72591162-72591181 | None:intergenic | 30.0% | |
| AATTGAGAACATAGAGGTTT+CGG | - | chr5.4:72589693-72589712 | None:intergenic | 30.0% | |
| ACAAGTACAAAACTGGAATT+TGG | + | chr5.4:72590198-72590217 | MS.gene038353:intron | 30.0% | |
| AGCAAAACATTTCTCAAGAA+GGG | - | chr5.4:72588573-72588592 | None:intergenic | 30.0% | |
| ATGAGATTTCCACTGAAAAA+GGG | + | chr5.4:72587289-72587308 | MS.gene038353:CDS | 30.0% | |
| CAGAGTTCAATTAGAAATTG+AGG | - | chr5.4:72588697-72588716 | None:intergenic | 30.0% | |
| GACAAGAATTTCATGCAAAT+AGG | - | chr5.4:72591348-72591367 | None:intergenic | 30.0% | |
| GATTGAAACAAGTACAAAAC+TGG | + | chr5.4:72590191-72590210 | MS.gene038353:intron | 30.0% | |
| GATTTAACAAAGGATGCATT+TGG | + | chr5.4:72589640-72589659 | MS.gene038353:intron | 30.0% | |
| GCAATTACTTCAATTCAATG+TGG | + | chr5.4:72588649-72588668 | MS.gene038353:intron | 30.0% | |
| GTTAGTAATACGATAGAGTT+TGG | + | chr5.4:72588507-72588526 | MS.gene038353:intron | 30.0% | |
| GTTCTTTGCATAACTCTTAA+AGG | + | chr5.4:72590367-72590386 | MS.gene038353:CDS | 30.0% | |
| TAGAATAACCAGAAAACACA+AGG | - | chr5.4:72590910-72590929 | None:intergenic | 30.0% | |
| TAGCAAAACATTTCTCAAGA+AGG | - | chr5.4:72588574-72588593 | None:intergenic | 30.0% | |
| TTTACAAACTTTCCCACATT+TGG | + | chr5.4:72589552-72589571 | MS.gene038353:CDS | 30.0% | |
| TTTCTAATTGAACTCTGAGT+TGG | + | chr5.4:72588700-72588719 | MS.gene038353:intron | 30.0% | |
| TTTCTTGGTTAGTGTATCAT+CGG | + | chr5.4:72587774-72587793 | MS.gene038353:intron | 30.0% | |
| TTTGAATTGAATTGGGGTTA+CGG | + | chr5.4:72587689-72587708 | MS.gene038353:intron | 30.0% | |
| ! | AACAGTTTTCATACATCAGA+AGG | + | chr5.4:72589423-72589442 | MS.gene038353:CDS | 30.0% |
| !! | CTATTTGTTGTTAGCTTTCT+TGG | + | chr5.4:72588928-72588947 | MS.gene038353:CDS | 30.0% |
| !! | TGGTTGGTAATGTATTCTTT+AGG | + | chr5.4:72590258-72590277 | MS.gene038353:intron | 30.0% |
| !! | TTTGCTATTGATATGTGTGT+TGG | + | chr5.4:72591180-72591199 | MS.gene038353:CDS | 30.0% |
| !!! | GGAATTTGTTTTGCAATAGT+TGG | - | chr5.4:72588850-72588869 | None:intergenic | 30.0% |
| AAAAAGGCCCATATTTGTAG+TGG | - | chr5.4:72589082-72589101 | None:intergenic | 35.0% | |
| AAAATATGCTGCAAAGTACG+AGG | - | chr5.4:72591050-72591069 | None:intergenic | 35.0% | |
| AAAATTATGAAAGTCCGCTG+AGG | - | chr5.4:72588623-72588642 | None:intergenic | 35.0% | |
| AATAACAGTATTCTCCTGTC+TGG | - | chr5.4:72587538-72587557 | None:intergenic | 35.0% | |
| AATAACTTGGCTCACAAACA+TGG | - | chr5.4:72590860-72590879 | None:intergenic | 35.0% | |
| AATATTGTTCGGTACTTCGT+TGG | + | chr5.4:72591090-72591109 | MS.gene038353:CDS | 35.0% | |
| AATCAAACTGTAGACATTGC+TGG | - | chr5.4:72589214-72589233 | None:intergenic | 35.0% | |
| AATTCAATGTGGATTCTCAG+TGG | + | chr5.4:72588660-72588679 | MS.gene038353:intron | 35.0% | |
| ACCAAGACTCTTAACATCAT+TGG | - | chr5.4:72588887-72588906 | None:intergenic | 35.0% | |
| ACCAATATTTCGCTGTTGAT+TGG | + | chr5.4:72589894-72589913 | MS.gene038353:CDS | 35.0% | |
| ACCAATCAACAGCGAAATAT+TGG | - | chr5.4:72589898-72589917 | None:intergenic | 35.0% | |
| AGTCACTTACTTCCTTTGAT+AGG | - | chr5.4:72589586-72589605 | None:intergenic | 35.0% | |
| AGTTAGTGTACCTTTCTAAG+TGG | - | chr5.4:72588970-72588989 | None:intergenic | 35.0% | |
| ATAGCAATGATTCTTGGTGA+TGG | + | chr5.4:72590325-72590344 | MS.gene038353:CDS | 35.0% | |
| ATAGGCATAGCAATGATTCT+TGG | + | chr5.4:72590319-72590338 | MS.gene038353:CDS | 35.0% | |
| ATGTTTGTGAGCCAAGTTAT+TGG | + | chr5.4:72590859-72590878 | MS.gene038353:CDS | 35.0% | |
| ATTCAGCTTCATCACAATGA+AGG | - | chr5.4:72587400-72587419 | None:intergenic | 35.0% | |
| CAAGTATATTCCTGTTCCTA+TGG | + | chr5.4:72591125-72591144 | MS.gene038353:CDS | 35.0% | |
| CAAGTTATTGGAACTGCTAT+CGG | + | chr5.4:72590871-72590890 | MS.gene038353:CDS | 35.0% | |
| CAATGTCTACAGTTTGATTG+CGG | + | chr5.4:72589215-72589234 | MS.gene038353:intron | 35.0% | |
| CACCATAATTGAGAACATAG+AGG | - | chr5.4:72589699-72589718 | None:intergenic | 35.0% | |
| CATAGGAACAGGAATATACT+TGG | - | chr5.4:72591127-72591146 | None:intergenic | 35.0% | |
| GATGAGATTTCCACTGAAAA+AGG | + | chr5.4:72587288-72587307 | MS.gene038353:CDS | 35.0% | |
| GATGTTAAGAGTCTTGGTTT+AGG | + | chr5.4:72588889-72588908 | MS.gene038353:CDS | 35.0% | |
| TACTTGCTTCTTTGCTAGTT+TGG | - | chr5.4:72589451-72589470 | None:intergenic | 35.0% | |
| TATCGAAACATGGCAATACT+AGG | + | chr5.4:72590991-72591010 | MS.gene038353:CDS | 35.0% | |
| TGGTTATTCTACCATGCATT+TGG | + | chr5.4:72590919-72590938 | MS.gene038353:CDS | 35.0% | |
| TTAAGAGTCTTGGTTTAGGA+TGG | + | chr5.4:72588893-72588912 | MS.gene038353:CDS | 35.0% | |
| TTCACATGGTTTACTTGTGT+AGG | + | chr5.4:72588793-72588812 | MS.gene038353:intron | 35.0% | |
| TTCAGATTGACATATCCAAG+TGG | + | chr5.4:72589378-72589397 | MS.gene038353:CDS | 35.0% | |
| TTCTTGGTTAGTGTATCATC+GGG | + | chr5.4:72587775-72587794 | MS.gene038353:intron | 35.0% | |
| TTGAATTGAATTGGGGTTAC+GGG | + | chr5.4:72587690-72587709 | MS.gene038353:intron | 35.0% | |
| TTGCTGACAAATCTTTCACA+TGG | + | chr5.4:72588779-72588798 | MS.gene038353:intron | 35.0% | |
| TTGTGATTCCTATTGACAGT+GGG | - | chr5.4:72587806-72587825 | None:intergenic | 35.0% | |
| TTTCGATAAACGAGTGCATA+AGG | - | chr5.4:72590979-72590998 | None:intergenic | 35.0% | |
| TTTGTGATTCCTATTGACAG+TGG | - | chr5.4:72587807-72587826 | None:intergenic | 35.0% | |
| ! | AAAGAAGCAAGTAAAAGCAC+TGG | + | chr5.4:72589458-72589477 | MS.gene038353:CDS | 35.0% |
| ! | AATATTTCGCTGTTGATTGG+TGG | + | chr5.4:72589897-72589916 | MS.gene038353:CDS | 35.0% |
| ! | AATCTCATCGAGTTGTTCAT+CGG | - | chr5.4:72587277-72587296 | None:intergenic | 35.0% |
| ! | ATCTTGAGTTTTTGTGTTGG+TGG | + | chr5.4:72587827-72587846 | MS.gene038353:intron | 35.0% |
| ! | ATGGCGATACCATTTTACAT+TGG | + | chr5.4:72591150-72591169 | MS.gene038353:CDS | 35.0% |
| ! | ATTTTTCTGCTACCTATGTG+GGG | + | chr5.4:72589847-72589866 | MS.gene038353:CDS | 35.0% |
| ! | GATTTTTCTGCTACCTATGT+GGG | + | chr5.4:72589846-72589865 | MS.gene038353:CDS | 35.0% |
| ! | TAATCAACCTTTTACCAGAC+AGG | + | chr5.4:72587521-72587540 | MS.gene038353:CDS | 35.0% |
| ! | TGATTTTTCTGCTACCTATG+TGG | + | chr5.4:72589845-72589864 | MS.gene038353:CDS | 35.0% |
| ! | TTGCTTTGCATGTGTTTTCT+TGG | + | chr5.4:72587759-72587778 | MS.gene038353:intron | 35.0% |
| ! | TTGTCATCGAATGAAAGTGT+AGG | - | chr5.4:72590460-72590479 | None:intergenic | 35.0% |
| ! | TTTTCAACCAGCAACAGAAA+GGG | - | chr5.4:72587861-72587880 | None:intergenic | 35.0% |
| !! | AAGAAGCAAGTAAAAGCACT+GGG | + | chr5.4:72589459-72589478 | MS.gene038353:CDS | 35.0% |
| !! | GGTGATGGTCTATTCAATTT+TGG | + | chr5.4:72590340-72590359 | MS.gene038353:CDS | 35.0% |
| !!! | GATATGGGTTTCTGGTTTTT+TGG | + | chr5.4:72587716-72587735 | MS.gene038353:intron | 35.0% |
| !!! | TAGATCTTTTTCGATGTGAC+TGG | + | chr5.4:72590238-72590257 | MS.gene038353:intron | 35.0% |
| AAACATGGCAATACTAGGTG+TGG | + | chr5.4:72590996-72591015 | MS.gene038353:CDS | 40.0% | |
| AACCTGCACCACTACAAATA+TGG | + | chr5.4:72589071-72589090 | MS.gene038353:intron | 40.0% | |
| ACATGGTCTTCAAGGTTACA+GGG | + | chr5.4:72590004-72590023 | MS.gene038353:CDS | 40.0% | |
| ACATGGTTTACTTGTGTAGG+TGG | + | chr5.4:72588796-72588815 | MS.gene038353:intron | 40.0% | |
| ACCAGCTTTCTCAAGTAACA+TGG | - | chr5.4:72587496-72587515 | None:intergenic | 40.0% | |
| ACCTGCACCACTACAAATAT+GGG | + | chr5.4:72589072-72589091 | MS.gene038353:intron | 40.0% | |
| ACTTTAGCTGGTGGAAAATG+TGG | - | chr5.4:72590579-72590598 | None:intergenic | 40.0% | |
| AGAAGGGTAAAAGAGCAAGT+TGG | - | chr5.4:72588557-72588576 | None:intergenic | 40.0% | |
| ATAGGCTTCTAGACCAAATG+TGG | - | chr5.4:72589568-72589587 | None:intergenic | 40.0% | |
| ATGAAGCTGAATCTCACTAC+TGG | + | chr5.4:72587408-72587427 | MS.gene038353:CDS | 40.0% | |
| ATTGGTGGAGTTCTTTCATG+GGG | + | chr5.4:72589912-72589931 | MS.gene038353:CDS | 40.0% | |
| CAAAACAGGTTACATGACAC+TGG | + | chr5.4:72590822-72590841 | MS.gene038353:CDS | 40.0% | |
| CATGGTTTACTTGTGTAGGT+GGG | + | chr5.4:72588797-72588816 | MS.gene038353:intron | 40.0% | |
| CGATAGCAGTTCCAATAACT+TGG | - | chr5.4:72590873-72590892 | None:intergenic | 40.0% | |
| CTCAAAGAAAGCAGCTTACA+TGG | + | chr5.4:72589987-72590006 | MS.gene038353:CDS | 40.0% | |
| CTCATGCAAGACTTCAAAAC+AGG | + | chr5.4:72590808-72590827 | MS.gene038353:CDS | 40.0% | |
| CTTCTTTGAATGTTTCGGCT+GGG | + | chr5.4:72587439-72587458 | MS.gene038353:CDS | 40.0% | |
| CTTTAGCTGGTGGAAAATGT+GGG | - | chr5.4:72590578-72590597 | None:intergenic | 40.0% | |
| GATTGGTGGAGTTCTTTCAT+GGG | + | chr5.4:72589911-72589930 | MS.gene038353:CDS | 40.0% | |
| GCAAAACAAATTCCAGAAGC+TGG | + | chr5.4:72588856-72588875 | MS.gene038353:CDS | 40.0% | |
| GCAGAAACAGGTTACTGTTA+GGG | + | chr5.4:72587338-72587357 | MS.gene038353:CDS | 40.0% | |
| GCCAATGATGTTAAGAGTCT+TGG | + | chr5.4:72588883-72588902 | MS.gene038353:CDS | 40.0% | |
| GGTTCTTCTTTGTCAAGACA+TGG | + | chr5.4:72587469-72587488 | MS.gene038353:CDS | 40.0% | |
| GTATTCTCCTGTCTGGTAAA+AGG | - | chr5.4:72587531-72587550 | None:intergenic | 40.0% | |
| TACATGGTCTTCAAGGTTAC+AGG | + | chr5.4:72590003-72590022 | MS.gene038353:CDS | 40.0% | |
| TACCATGCATTTGGTACTCT+TGG | + | chr5.4:72590928-72590947 | MS.gene038353:CDS | 40.0% | |
| TAGGCTTCTAGACCAAATGT+GGG | - | chr5.4:72589567-72589586 | None:intergenic | 40.0% | |
| TATTCCTGTTCCTATGGCTA+TGG | + | chr5.4:72591131-72591150 | MS.gene038353:CDS | 40.0% | |
| TCCACTGAAAAAGGGTTTGA+AGG | + | chr5.4:72587297-72587316 | MS.gene038353:CDS | 40.0% | |
| TGAAGCTGAATCTCACTACT+GGG | + | chr5.4:72587409-72587428 | MS.gene038353:CDS | 40.0% | |
| TGAATTGAATTGGGGTTACG+GGG | + | chr5.4:72587691-72587710 | MS.gene038353:intron | 40.0% | |
| TGATGTGATACCACTTTAGC+TGG | - | chr5.4:72590591-72590610 | None:intergenic | 40.0% | |
| TGATTCAAACATCAGCAGTG+AGG | - | chr5.4:72589289-72589308 | None:intergenic | 40.0% | |
| TGATTGGTGGAGTTCTTTCA+TGG | + | chr5.4:72589910-72589929 | MS.gene038353:CDS | 40.0% | |
| TGCACTCGTTTATCGAAACA+TGG | + | chr5.4:72590981-72591000 | MS.gene038353:CDS | 40.0% | |
| TGGCTCACAAACATGGATTT+CGG | - | chr5.4:72590853-72590872 | None:intergenic | 40.0% | |
| TTCAGTGGTTCCACTTAGAA+AGG | + | chr5.4:72588957-72588976 | MS.gene038353:CDS | 40.0% | |
| TTGGTCTAGAAGCCTATCAA+AGG | + | chr5.4:72589571-72589590 | MS.gene038353:CDS | 40.0% | |
| TTTAGCTGGTGGAAAATGTG+GGG | - | chr5.4:72590577-72590596 | None:intergenic | 40.0% | |
| ! | AAGGAAAATCGGTTCCTTCA+TGG | + | chr5.4:72587316-72587335 | MS.gene038353:CDS | 40.0% |
| ! | ACATTTTCCACCAGCTAAAG+TGG | + | chr5.4:72590578-72590597 | MS.gene038353:CDS | 40.0% |
| ! | ACCATGTTACTTGAGAAAGC+TGG | + | chr5.4:72587492-72587511 | MS.gene038353:CDS | 40.0% |
| ! | CAAAGTACGAGGCAGTTTTT+CGG | - | chr5.4:72591039-72591058 | None:intergenic | 40.0% |
| ! | CATCGAATGAAAGTGTAGGT+GGG | - | chr5.4:72590456-72590475 | None:intergenic | 40.0% |
| ! | CTTCTCCTTTAGCTTCTTGT+GGG | + | chr5.4:72589488-72589507 | MS.gene038353:CDS | 40.0% |
| ! | CTTTCTTGGTCTCTTTTCAG+TGG | + | chr5.4:72588942-72588961 | MS.gene038353:CDS | 40.0% |
| ! | CTTTTCAACCAGCAACAGAA+AGG | - | chr5.4:72587862-72587881 | None:intergenic | 40.0% |
| ! | GAAGATGGCTAATTTTCCGT+AGG | - | chr5.4:72590695-72590714 | None:intergenic | 40.0% |
| ! | GTGGTGCAGGTTACATTTTA+AGG | - | chr5.4:72589063-72589082 | None:intergenic | 40.0% |
| ! | TCATCGAATGAAAGTGTAGG+TGG | - | chr5.4:72590457-72590476 | None:intergenic | 40.0% |
| ! | TCTTCTCCTTTAGCTTCTTG+TGG | + | chr5.4:72589487-72589506 | MS.gene038353:CDS | 40.0% |
| ! | TGATTTGCGGAGATGGAATT+TGG | + | chr5.4:72591280-72591299 | MS.gene038353:CDS | 40.0% |
| ! | TGTTACTTGAGAAAGCTGGT+TGG | + | chr5.4:72587496-72587515 | MS.gene038353:CDS | 40.0% |
| ! | TTCCAATGGTTTTTCACTGC+TGG | + | chr5.4:72589516-72589535 | MS.gene038353:CDS | 40.0% |
| ! | TTCTCCTTTAGCTTCTTGTG+GGG | + | chr5.4:72589489-72589508 | MS.gene038353:CDS | 40.0% |
| ! | TTGTATCGCCTTGTGTTTTC+TGG | + | chr5.4:72590899-72590918 | MS.gene038353:CDS | 40.0% |
| ! | TTTACTTGTGTAGGTGGGTT+TGG | + | chr5.4:72588802-72588821 | MS.gene038353:intron | 40.0% |
| ! | TTTTTCTGCTACCTATGTGG+GGG | + | chr5.4:72589848-72589867 | MS.gene038353:CDS | 40.0% |
| !! | CCTCTCATTGGTGCTAAAAA+AGG | + | chr5.4:72589945-72589964 | MS.gene038353:CDS | 40.0% |
| !! | GTTGCTTCTGGTTTGATTTG+CGG | + | chr5.4:72591267-72591286 | MS.gene038353:CDS | 40.0% |
| !! | TGCTTTCTTTGAGATCAGCA+GGG | - | chr5.4:72589980-72589999 | None:intergenic | 40.0% |
| !! | TTGGTGCTAAAAAAGGAGAC+TGG | + | chr5.4:72589952-72589971 | MS.gene038353:CDS | 40.0% |
| !!! | CCTTTTTTAGCACCAATGAG+AGG | - | chr5.4:72589948-72589967 | None:intergenic | 40.0% |
| !!! | TCCTTCAAACCCTTTTTCAG+TGG | - | chr5.4:72587301-72587320 | None:intergenic | 40.0% |
| !!! | TCTTTTTCGATGTGACTGGT+TGG | + | chr5.4:72590242-72590261 | MS.gene038353:intron | 40.0% |
| AAACGAGTGCATAAGGTGCA+GGG | - | chr5.4:72590972-72590991 | None:intergenic | 45.0% | |
| AATGGTATCGCCATAGCCAT+AGG | - | chr5.4:72591144-72591163 | None:intergenic | 45.0% | |
| AATGTTTCGGCTGGGTTGTT+AGG | + | chr5.4:72587447-72587466 | MS.gene038353:CDS | 45.0% | |
| AGACAAAGTAGCACAGTCTG+AGG | + | chr5.4:72590414-72590433 | MS.gene038353:CDS | 45.0% | |
| AGCAGCTTACATGGTCTTCA+AGG | + | chr5.4:72589996-72590015 | MS.gene038353:CDS | 45.0% | |
| AGGAGGGGATTTGATCTTTG+AGG | - | chr5.4:72590501-72590520 | None:intergenic | 45.0% | |
| ATCTGTTAGTCCACAGCCAT+AGG | - | chr5.4:72590656-72590675 | None:intergenic | 45.0% | |
| ATGGCAATACTAGGTGTGGA+TGG | + | chr5.4:72591000-72591019 | MS.gene038353:CDS | 45.0% | |
| ATGTTTCGGCTGGGTTGTTA+GGG | + | chr5.4:72587448-72587467 | MS.gene038353:CDS | 45.0% | |
| ATTCGATGACAAGCGCAGAA+CGG | + | chr5.4:72590468-72590487 | MS.gene038353:CDS | 45.0% | |
| CACCAGCAGTGAAAAACCAT+TGG | - | chr5.4:72589521-72589540 | None:intergenic | 45.0% | |
| CCAGCCGAAACATTCAAAGA+AGG | - | chr5.4:72587441-72587460 | None:intergenic | 45.0% | |
| CCTTCTTTGAATGTTTCGGC+TGG | + | chr5.4:72587438-72587457 | MS.gene038353:CDS | 45.0% | |
| GAAACCCCACAAGAAGCTAA+AGG | - | chr5.4:72589496-72589515 | None:intergenic | 45.0% | |
| GCAAGAGCAAGAAAAGAGCT+AGG | - | chr5.4:72591312-72591331 | None:intergenic | 45.0% | |
| GCAGCTAATGCTAAGGTTGA+TGG | + | chr5.4:72591372-72591391 | MS.gene038353:CDS | 45.0% | |
| GCTAGTGGAATTGCATTCAG+CGG | + | chr5.4:72587576-72587595 | MS.gene038353:CDS | 45.0% | |
| GGCAGAAACAGGTTACTGTT+AGG | + | chr5.4:72587337-72587356 | MS.gene038353:CDS | 45.0% | |
| TAAACGAGTGCATAAGGTGC+AGG | - | chr5.4:72590973-72590992 | None:intergenic | 45.0% | |
| TCAAAGATCAAATCCCCTCC+TGG | + | chr5.4:72590500-72590519 | MS.gene038353:CDS | 45.0% | |
| TCTTGTGGGGTTTCTTCCAA+TGG | + | chr5.4:72589502-72589521 | MS.gene038353:CDS | 45.0% | |
| TGGATTCTCAGTGGAATGAG+TGG | + | chr5.4:72588669-72588688 | MS.gene038353:intron | 45.0% | |
| TGGTTAGTGTATCATCGGGT+GGG | + | chr5.4:72587779-72587798 | MS.gene038353:intron | 45.0% | |
| TGTGATACCACTTTAGCTGG+TGG | - | chr5.4:72590588-72590607 | None:intergenic | 45.0% | |
| TTAGCTGGTGGAAAATGTGG+GGG | - | chr5.4:72590576-72590595 | None:intergenic | 45.0% | |
| TTGGTTAGTGTATCATCGGG+TGG | + | chr5.4:72587778-72587797 | MS.gene038353:intron | 45.0% | |
| TTTGGTACTCTTGGTCAACC+TGG | + | chr5.4:72590937-72590956 | MS.gene038353:CDS | 45.0% | |
| ! | AATGAAAGTGTAGGTGGGAG+AGG | - | chr5.4:72590451-72590470 | None:intergenic | 45.0% |
| ! | ACAGCCATAGGCATTGCAAA+AGG | - | chr5.4:72590644-72590663 | None:intergenic | 45.0% |
| ! | ACTTGTGTTGTTGCTGCTAG+TGG | + | chr5.4:72587561-72587580 | MS.gene038353:CDS | 45.0% |
| ! | AGCTCTTTTCTTGCTCTTGC+TGG | + | chr5.4:72591312-72591331 | MS.gene038353:CDS | 45.0% |
| ! | ATGGCTGTGGACTAACAGAT+TGG | + | chr5.4:72590656-72590675 | MS.gene038353:CDS | 45.0% |
| ! | ATTTTCCGTAGGTCGATGCA+AGG | - | chr5.4:72590684-72590703 | None:intergenic | 45.0% |
| ! | GGGTTTGGTAGCTACTTGTT+TGG | + | chr5.4:72588817-72588836 | MS.gene038353:CDS | 45.0% |
| ! | GTCTAGAGCAGCTAATGCTA+AGG | + | chr5.4:72591365-72591384 | MS.gene038353:CDS | 45.0% |
| ! | TTCTTTCATGGGGTGTCATG+TGG | + | chr5.4:72589922-72589941 | MS.gene038353:CDS | 45.0% |
| ! | TTTTCCGTAGGTCGATGCAA+GGG | - | chr5.4:72590683-72590702 | None:intergenic | 45.0% |
| ! | TTTTGCAATGCCTATGGCTG+TGG | + | chr5.4:72590643-72590662 | MS.gene038353:CDS | 45.0% |
| !! | CTAGCCTTTTGCAATGCCTA+TGG | + | chr5.4:72590637-72590656 | MS.gene038353:CDS | 45.0% |
| !! | CTGCTTTCTTTGAGATCAGC+AGG | - | chr5.4:72589981-72590000 | None:intergenic | 45.0% |
| !! | GACCAAGAGTACCAAATGCA+TGG | - | chr5.4:72590933-72590952 | None:intergenic | 45.0% |
| !! | GTAACCTGTTTCTGCCATGA+AGG | - | chr5.4:72587333-72587352 | None:intergenic | 45.0% |
| !! | TCTGGTTTGATTTGCGGAGA+TGG | + | chr5.4:72591273-72591292 | MS.gene038353:CDS | 45.0% |
| !!! | AATTTACTTTTAATTTAATT+AGG | + | chr5.4:72587895-72587914 | MS.gene038353:intron | 5.0% |
| !!! | TTTTTATTTATTTAAATTGT+AGG | + | chr5.4:72590051-72590070 | MS.gene038353:intron | 5.0% |
| ACCAGCAACAGAAAGGGTGA+AGG | - | chr5.4:72587855-72587874 | None:intergenic | 50.0% | |
| ATAGCCTGCGATAGCAAACC+AGG | - | chr5.4:72590521-72590540 | None:intergenic | 50.0% | |
| ATCGCCATAGCCATAGGAAC+AGG | - | chr5.4:72591138-72591157 | None:intergenic | 50.0% | |
| CACATGCTGCTAAACTGGCT+AGG | - | chr5.4:72590753-72590772 | None:intergenic | 50.0% | |
| CCAGCAACAGAAAGGGTGAA+GGG | - | chr5.4:72587854-72587873 | None:intergenic | 50.0% | |
| CTAGCCAGTTTAGCAGCATG+TGG | + | chr5.4:72590751-72590770 | MS.gene038353:CDS | 50.0% | |
| GACACCACATGCTGCTAAAC+TGG | - | chr5.4:72590758-72590777 | None:intergenic | 50.0% | |
| GCATTGCAAAAGGCTAGTGC+GGG | - | chr5.4:72590634-72590653 | None:intergenic | 50.0% | |
| GCCCATATTTGTAGTGGTGC+AGG | - | chr5.4:72589076-72589095 | None:intergenic | 50.0% | |
| GGCATTGCAAAAGGCTAGTG+CGG | - | chr5.4:72590635-72590654 | None:intergenic | 50.0% | |
| GGTTCCTTCATGGCAGAAAC+AGG | + | chr5.4:72587326-72587345 | MS.gene038353:CDS | 50.0% | |
| GTGCTAGTAGTCTACCTCAG+CGG | + | chr5.4:72588606-72588625 | MS.gene038353:intron | 50.0% | |
| GTTTGATTGCGGTTTCGTCC+TGG | + | chr5.4:72589226-72589245 | MS.gene038353:intron | 50.0% | |
| TATCATCCCAACCCCCACAT+AGG | - | chr5.4:72589862-72589881 | None:intergenic | 50.0% | |
| TGAGCTGTTGCAGTACCACT+TGG | - | chr5.4:72589396-72589415 | None:intergenic | 50.0% | |
| TGCTCCAAATGCATCAGCCT+TGG | - | chr5.4:72591244-72591263 | None:intergenic | 50.0% | |
| ! | CCATCTTCACTATCGGTGCT+TGG | + | chr5.4:72590707-72590726 | MS.gene038353:CDS | 50.0% |
| ! | CTCATCGAGTTGTTCATCGG+AGG | - | chr5.4:72587274-72587293 | None:intergenic | 50.0% |
| ! | TTCACTATCGGTGCTTGGAC+AGG | + | chr5.4:72590712-72590731 | MS.gene038353:CDS | 50.0% |
| ! | TTCACTGCTGGTGATGCTTG+TGG | + | chr5.4:72589528-72589547 | MS.gene038353:CDS | 50.0% |
| ! | TTTGGAGCAGCTGTTGCTTC+TGG | + | chr5.4:72591255-72591274 | MS.gene038353:CDS | 50.0% |
| !! | ACGGGGTTGATATGGGTTTC+TGG | + | chr5.4:72587708-72587727 | MS.gene038353:intron | 50.0% |
| !! | CCAAGCACCGATAGTGAAGA+TGG | - | chr5.4:72590710-72590729 | None:intergenic | 50.0% |
| !! | TGGGGTTACGGGGTTGATAT+GGG | + | chr5.4:72587701-72587720 | MS.gene038353:intron | 50.0% |
| !! | TTGGGGTTACGGGGTTGATA+TGG | + | chr5.4:72587700-72587719 | MS.gene038353:intron | 50.0% |
| AGGGCCAAGGCTGATGCATT+TGG | + | chr5.4:72591237-72591256 | MS.gene038353:CDS | 55.0% | |
| CCCTTCACCCTTTCTGTTGC+TGG | + | chr5.4:72587851-72587870 | MS.gene038353:intron | 55.0% | |
| CCTGCGATAGCAAACCAGGA+GGG | - | chr5.4:72590517-72590536 | None:intergenic | 55.0% | |
| CTGCGATAGCAAACCAGGAG+GGG | - | chr5.4:72590516-72590535 | None:intergenic | 55.0% | |
| CTGCTACCTATGTGGGGGTT+GGG | + | chr5.4:72589853-72589872 | MS.gene038353:CDS | 55.0% | |
| CTGGTGGAAAATGTGGGGGA+TGG | - | chr5.4:72590572-72590591 | None:intergenic | 55.0% | |
| TCAACGTCACGTCGTCGATG+AGG | - | chr5.4:72587249-72587268 | None:intergenic | 55.0% | |
| TCACGTCGTCGATGAGGTTC+TGG | - | chr5.4:72587243-72587262 | None:intergenic | 55.0% | |
| TCATTGGCAGTGCCAGCTTC+TGG | - | chr5.4:72588871-72588890 | None:intergenic | 55.0% | |
| TCTGCTACCTATGTGGGGGT+TGG | + | chr5.4:72589852-72589871 | MS.gene038353:CDS | 55.0% | |
| ! | GGTGTCATGTGGCCTCTCAT+TGG | + | chr5.4:72589933-72589952 | MS.gene038353:CDS | 55.0% |
| ! | TGGTCCCTTGCATCGACCTA+CGG | + | chr5.4:72590676-72590695 | MS.gene038353:CDS | 55.0% |
| !! | GTAGGTGGGAGAGGAGCATT+TGG | - | chr5.4:72590442-72590461 | None:intergenic | 55.0% |
| ACTGGCTAGGATACCGCCGT+TGG | - | chr5.4:72590740-72590759 | None:intergenic | 60.0% | |
| GCCTGCGATAGCAAACCAGG+AGG | - | chr5.4:72590518-72590537 | None:intergenic | 60.0% | |
| GGGTGGGTCCCACTGTCAAT+AGG | + | chr5.4:72587795-72587814 | MS.gene038353:intron | 60.0% | |
| GGTGCAGGGTATGCTGAACC+AGG | - | chr5.4:72590958-72590977 | None:intergenic | 60.0% | |
| GGTGCTTGGACAGGAGCCAA+CGG | + | chr5.4:72590721-72590740 | MS.gene038353:CDS | 60.0% | |
| !! | CCCTCCTGGTTTGCTATCGC+AGG | + | chr5.4:72590514-72590533 | MS.gene038353:CDS | 60.0% |
| GCTTGGACAGGAGCCAACGG+CGG | + | chr5.4:72590724-72590743 | MS.gene038353:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5.4 | gene | 72587234 | 72591410 | 72587234 | ID=MS.gene038353 |
| chr5.4 | mRNA | 72587234 | 72591410 | 72587234 | ID=MS.gene038353.t1;Parent=MS.gene038353 |
| chr5.4 | exon | 72587234 | 72587597 | 72587234 | ID=MS.gene038353.t1.exon1;Parent=MS.gene038353.t1 |
| chr5.4 | CDS | 72587234 | 72587597 | 72587234 | ID=cds.MS.gene038353.t1;Parent=MS.gene038353.t1 |
| chr5.4 | exon | 72588815 | 72588978 | 72588815 | ID=MS.gene038353.t1.exon2;Parent=MS.gene038353.t1 |
| chr5.4 | CDS | 72588815 | 72588978 | 72588815 | ID=cds.MS.gene038353.t1;Parent=MS.gene038353.t1 |
| chr5.4 | exon | 72589363 | 72589595 | 72589363 | ID=MS.gene038353.t1.exon3;Parent=MS.gene038353.t1 |
| chr5.4 | CDS | 72589363 | 72589595 | 72589363 | ID=cds.MS.gene038353.t1;Parent=MS.gene038353.t1 |
| chr5.4 | exon | 72589836 | 72590025 | 72589836 | ID=MS.gene038353.t1.exon4;Parent=MS.gene038353.t1 |
| chr5.4 | CDS | 72589836 | 72590025 | 72589836 | ID=cds.MS.gene038353.t1;Parent=MS.gene038353.t1 |
| chr5.4 | exon | 72590313 | 72591410 | 72590313 | ID=MS.gene038353.t1.exon5;Parent=MS.gene038353.t1 |
| chr5.4 | CDS | 72590313 | 72591410 | 72590313 | ID=cds.MS.gene038353.t1;Parent=MS.gene038353.t1 |
| Gene Sequence |
| Protein sequence |
