Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene038357.t1 | XP_003617446.1 | 99 | 406 | 4 | 0 | 1 | 406 | 133 | 538 | 1.40E-230 | 808.5 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene038357.t1 | Q9SHJ5 | 64.8 | 409 | 132 | 6 | 1 | 398 | 178 | 585 | 1.1e-146 | 521.2 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene038357.t1 | G7K3C7 | 99.0 | 406 | 4 | 0 | 1 | 406 | 133 | 538 | 1.0e-230 | 808.5 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene038357 | MS.gene20875 | PPI |
| MS.gene005496 | MS.gene038357 | PPI |
| MS.gene07326 | MS.gene038357 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene038357.t1 | MTR_5g091660 | 99.015 | 406 | 4 | 0 | 1 | 406 | 133 | 538 | 0.0 | 826 |
| MS.gene038357.t1 | MTR_3g448430 | 70.677 | 399 | 112 | 3 | 1 | 397 | 116 | 511 | 0.0 | 581 |
| MS.gene038357.t1 | MTR_3g048330 | 77.091 | 275 | 59 | 2 | 129 | 399 | 1 | 275 | 2.89e-153 | 434 |
| MS.gene038357.t1 | MTR_1g040500 | 51.951 | 410 | 184 | 4 | 1 | 402 | 92 | 496 | 8.02e-145 | 424 |
| MS.gene038357.t1 | MTR_4g415290 | 52.346 | 405 | 181 | 6 | 1 | 399 | 93 | 491 | 1.97e-136 | 400 |
| MS.gene038357.t1 | MTR_5g061520 | 49.502 | 402 | 186 | 6 | 4 | 396 | 87 | 480 | 1.35e-135 | 397 |
| MS.gene038357.t1 | MTR_1g086650 | 51.493 | 402 | 181 | 8 | 4 | 397 | 134 | 529 | 1.51e-135 | 399 |
| MS.gene038357.t1 | MTR_7g067380 | 52.488 | 402 | 180 | 6 | 1 | 397 | 96 | 491 | 4.75e-135 | 396 |
| MS.gene038357.t1 | MTR_5g080360 | 47.912 | 407 | 202 | 5 | 1 | 401 | 74 | 476 | 9.67e-129 | 380 |
| MS.gene038357.t1 | MTR_8g030620 | 46.602 | 412 | 208 | 6 | 1 | 405 | 99 | 505 | 1.87e-124 | 369 |
| MS.gene038357.t1 | MTR_7g075930 | 59.524 | 84 | 16 | 1 | 144 | 227 | 3 | 68 | 2.78e-24 | 95.5 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene038357.t1 | AT1G06520 | 64.792 | 409 | 132 | 6 | 1 | 398 | 178 | 585 | 0.0 | 537 |
| MS.gene038357.t1 | AT1G02390 | 50.121 | 413 | 185 | 8 | 4 | 399 | 121 | 529 | 9.07e-131 | 386 |
| MS.gene038357.t1 | AT4G01950 | 49.877 | 407 | 187 | 10 | 6 | 399 | 117 | 519 | 3.45e-129 | 382 |
| MS.gene038357.t1 | AT4G01950 | 50.123 | 407 | 186 | 10 | 6 | 399 | 145 | 547 | 1.09e-128 | 382 |
| MS.gene038357.t1 | AT2G38110 | 50.370 | 405 | 187 | 7 | 1 | 397 | 96 | 494 | 1.53e-128 | 380 |
| MS.gene038357.t1 | AT3G11430 | 49.153 | 413 | 196 | 8 | 1 | 405 | 83 | 489 | 3.94e-128 | 379 |
| MS.gene038357.t1 | AT5G06090 | 47.445 | 411 | 208 | 6 | 1 | 406 | 81 | 488 | 4.97e-125 | 371 |
| MS.gene038357.t1 | AT4G00400 | 46.117 | 412 | 210 | 6 | 1 | 405 | 94 | 500 | 2.55e-123 | 366 |
| MS.gene038357.t1 | AT1G01610 | 45.874 | 412 | 210 | 7 | 1 | 404 | 94 | 500 | 9.82e-117 | 350 |
| MS.gene038357.t1 | AT3G11325 | 43.911 | 271 | 112 | 3 | 135 | 401 | 139 | 373 | 2.70e-72 | 232 |
| MS.gene038357.t1 | AT3G11325 | 43.911 | 271 | 112 | 3 | 135 | 401 | 142 | 376 | 2.78e-72 | 232 |
Find 71 sgRNAs with CRISPR-Local
Find 105 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTATATGTTACTGCAGTTAA+AGG | 0.179926 | 5.4:+72615103 | None:intergenic |
| CTTCCATCATGAAATATTAA+TGG | 0.211384 | 5.4:+72615388 | None:intergenic |
| AGTTATCATATTCAAATTCT+TGG | 0.253973 | 5.4:-72614785 | MS.gene038357:CDS |
| CCAGCACATGTAAGTTCTTT+AGG | 0.256974 | 5.4:+72614755 | None:intergenic |
| GGTGATAGAAAACCTGATAT+TGG | 0.266071 | 5.4:-72615869 | MS.gene038357:CDS |
| TCTCTACATGTTGTTCCTTC+AGG | 0.287385 | 5.4:+72614962 | None:intergenic |
| GCAATTTATAGAATCCTTCT+TGG | 0.289025 | 5.4:-72615295 | MS.gene038357:CDS |
| AAACAATTGGGTGATGCTTT+GGG | 0.291614 | 5.4:-72614695 | MS.gene038357:CDS |
| TACAAATTAGCACTTGAATT+AGG | 0.294114 | 5.4:-72615259 | MS.gene038357:CDS |
| AGAGCACTAAAGGAGTATTT+TGG | 0.306414 | 5.4:-72615890 | MS.gene038357:CDS |
| GAAACAATTGGGTGATGCTT+TGG | 0.315610 | 5.4:-72614696 | MS.gene038357:CDS |
| TCATGAAATATTAATGGCTT+TGG | 0.325007 | 5.4:+72615394 | None:intergenic |
| TCCCTTGGCATGATTGAGTT+TGG | 0.327913 | 5.4:+72615424 | None:intergenic |
| GAACTAAACCTTAACAAATA+TGG | 0.328528 | 5.4:+72614938 | None:intergenic |
| TATGAGGTTCTTGCTTCAGC+TGG | 0.331253 | 5.4:-72616067 | MS.gene038357:CDS |
| ACAAACAAAACACCTTTGTT+TGG | 0.332605 | 5.4:+72615181 | None:intergenic |
| GAAGTTCCAATTCCAATATC+AGG | 0.337684 | 5.4:+72615857 | None:intergenic |
| AGAAAACCTGATATTGGAAT+TGG | 0.340801 | 5.4:-72615863 | MS.gene038357:CDS |
| TAGCACTTGAATTAGGAGTT+TGG | 0.358699 | 5.4:-72615252 | MS.gene038357:CDS |
| GGCTTTGGATATTTGTCCCT+TGG | 0.362641 | 5.4:+72615409 | None:intergenic |
| AATTCAAGTGCTAATTTGTA+AGG | 0.369177 | 5.4:+72615262 | None:intergenic |
| GATAAGTATATGATGCTTGC+AGG | 0.371641 | 5.4:-72614644 | MS.gene038357:CDS |
| GGCACAGAGTTACACACATT+TGG | 0.377564 | 5.4:-72615962 | MS.gene038357:CDS |
| TAGTTCATTGTTTGCTGAGT+TGG | 0.382543 | 5.4:-72614921 | MS.gene038357:CDS |
| TAATTATATACAGAAACAAT+TGG | 0.393290 | 5.4:-72614708 | MS.gene038357:CDS |
| AATGATGTGCTTAAGAAAAC+AGG | 0.399947 | 5.4:+72615133 | None:intergenic |
| GTAGAGAACCATATTTGTTA+AGG | 0.401265 | 5.4:-72614946 | MS.gene038357:CDS |
| AGCAAGCGGATTGAAGTGTT+TGG | 0.402620 | 5.4:-72614840 | MS.gene038357:CDS |
| TGAATATGATAACTTGGCTT+AGG | 0.405031 | 5.4:+72614794 | None:intergenic |
| GTTATCATATTCAAATTCTT+GGG | 0.414102 | 5.4:-72614784 | MS.gene038357:CDS |
| TCTTAATCTTCAAGTTTATG+AGG | 0.426090 | 5.4:-72616083 | MS.gene038357:CDS |
| CACAAGTGTGCCTAGAGTTA+TGG | 0.426617 | 5.4:-72616029 | MS.gene038357:CDS |
| AGATTCTCTAAATAAAACTT+TGG | 0.454948 | 5.4:+72616103 | None:intergenic |
| GTGCCTAGAGTTATGGTAGA+AGG | 0.456952 | 5.4:-72616022 | MS.gene038357:CDS |
| ATGAGGTTCTTGCTTCAGCT+GGG | 0.457350 | 5.4:-72616066 | MS.gene038357:CDS |
| ATTGCTAAAATAATTCCAAT+TGG | 0.461462 | 5.4:+72615313 | None:intergenic |
| ACATTTGGTTGCTACTTCAC+TGG | 0.463035 | 5.4:-72615947 | MS.gene038357:CDS |
| AGAATTTGAATATGATAACT+TGG | 0.464884 | 5.4:+72614788 | None:intergenic |
| ATGATGCTTGCAGGGAATGA+AGG | 0.469185 | 5.4:-72614635 | MS.gene038357:CDS |
| CCTAAAGAACTTACATGTGC+TGG | 0.479006 | 5.4:-72614755 | MS.gene038357:CDS |
| ATGCACACATAGGACATTGT+TGG | 0.480393 | 5.4:-72615158 | MS.gene038357:CDS |
| ATGTTCATGTGGCTACCAAT+TGG | 0.484031 | 5.4:-72615328 | MS.gene038357:CDS |
| TTTAAAACTTACCTTGCAAG+TGG | 0.500492 | 5.4:+72615808 | None:intergenic |
| TGTTAAGCATAGAGCACTAA+AGG | 0.508113 | 5.4:-72615900 | MS.gene038357:CDS |
| AATTATATACAGAAACAATT+GGG | 0.512388 | 5.4:-72614707 | MS.gene038357:CDS |
| GATTTAGTTGTTTGTCCTGA+AGG | 0.517928 | 5.4:-72614977 | MS.gene038357:CDS |
| CAAGTGCTAATTTGTAAGGA+AGG | 0.518754 | 5.4:+72615266 | None:intergenic |
| TCATATTCAAATTCTTGGGA+AGG | 0.522054 | 5.4:-72614780 | MS.gene038357:CDS |
| AGGACATGGAAAATGTTTCA+AGG | 0.522825 | 5.4:-72616135 | None:intergenic |
| GGACATGGAAAATGTTTCAA+GGG | 0.537352 | 5.4:-72616134 | None:intergenic |
| TGATGCTTGCAGGGAATGAA+GGG | 0.541271 | 5.4:-72614634 | MS.gene038357:CDS |
| TTGAAAGAGTATTTGAGTGT+CGG | 0.541833 | 5.4:-72615995 | MS.gene038357:CDS |
| AAGCCATTAATATTTCATGA+TGG | 0.544073 | 5.4:-72615391 | MS.gene038357:CDS |
| AACAATTGGGTGATGCTTTG+GGG | 0.546847 | 5.4:-72614694 | MS.gene038357:CDS |
| AATCCTTCTACCATAACTCT+AGG | 0.553018 | 5.4:+72616019 | None:intergenic |
| GTCCAAACTCAATCATGCCA+AGG | 0.568054 | 5.4:-72615426 | MS.gene038357:CDS |
| ATGCAAAAGTTACTAAGAGA+AGG | 0.576242 | 5.4:-72615001 | MS.gene038357:CDS |
| GAACATGTAGAGTGTTGCTA+AGG | 0.578977 | 5.4:+72615345 | None:intergenic |
| TAGAGTGTTGCTAAGGGTGT+TGG | 0.593516 | 5.4:+72615352 | None:intergenic |
| AGGAAAGTCAAGTGTTGAAG+TGG | 0.599119 | 5.4:-72614732 | MS.gene038357:CDS |
| ACATGAGTATTCATTGCCAC+AGG | 0.603998 | 5.4:+72614884 | None:intergenic |
| ATAAGTATATGATGCTTGCA+GGG | 0.611754 | 5.4:-72614643 | MS.gene038357:CDS |
| ACACTTCAATCCGCTTGCTG+TGG | 0.619110 | 5.4:+72614844 | None:intergenic |
| AAGGAAGGAAAATACCAAGA+AGG | 0.620364 | 5.4:+72615281 | None:intergenic |
| TCCAAACTCAATCATGCCAA+GGG | 0.637627 | 5.4:-72615425 | MS.gene038357:CDS |
| ACAAGAGACAGAAAACAAGA+TGG | 0.639648 | 5.4:-72615031 | MS.gene038357:CDS |
| CAACACTCTACATGTTCATG+TGG | 0.648188 | 5.4:-72615339 | MS.gene038357:CDS |
| AAAGAACTTACATGTGCTGG+AGG | 0.654606 | 5.4:-72614752 | MS.gene038357:CDS |
| CTTGAATTAGGAGTTTGGAG+TGG | 0.656078 | 5.4:-72615247 | MS.gene038357:CDS |
| GGCTAATGAGATAGTGCCTG+TGG | 0.689080 | 5.4:-72614900 | MS.gene038357:CDS |
| AACATGTAGAGTGTTGCTAA+GGG | 0.697607 | 5.4:+72615346 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TAAATTAATTATGTTCTATA+TGG | + | chr5.4:72615179-72615198 | None:intergenic | 10.0% |
| !!! | GTTTTAAACAATTTTTTTAA+AGG | - | chr5.4:72614932-72614951 | MS.gene038357:CDS | 10.0% |
| !! | AATTATATACAGAAACAATT+GGG | - | chr5.4:72616018-72616037 | MS.gene038357:CDS | 15.0% |
| !! | TAAAATTAAAATTCCAAATG+AGG | + | chr5.4:72615123-72615142 | None:intergenic | 15.0% |
| !! | TAATTATATACAGAAACAAT+TGG | - | chr5.4:72616017-72616036 | MS.gene038357:CDS | 15.0% |
| !! | AAAAAAACAAAACCAAACAA+AGG | - | chr5.4:72615532-72615551 | MS.gene038357:intron | 20.0% |
| !! | AACATTATTATTTCCTCATT+TGG | - | chr5.4:72615107-72615126 | MS.gene038357:CDS | 20.0% |
| !! | AGAATTTGAATATGATAACT+TGG | + | chr5.4:72615940-72615959 | None:intergenic | 20.0% |
| !! | AGATTCTCTAAATAAAACTT+TGG | + | chr5.4:72614625-72614644 | None:intergenic | 20.0% |
| !! | AGTTATCATATTCAAATTCT+TGG | - | chr5.4:72615940-72615959 | MS.gene038357:CDS | 20.0% |
| !! | ATTGCTAAAATAATTCCAAT+TGG | + | chr5.4:72615415-72615434 | None:intergenic | 20.0% |
| !! | GTTATCATATTCAAATTCTT+GGG | - | chr5.4:72615941-72615960 | MS.gene038357:CDS | 20.0% |
| !!! | AAACAATTTTTTTAAAGGGT+TGG | - | chr5.4:72614937-72614956 | MS.gene038357:CDS | 20.0% |
| !!! | GAGGAAATAATAATGTTTTT+TGG | + | chr5.4:72615104-72615123 | None:intergenic | 20.0% |
| !!! | TGTTTGGTTTTGTTTTTTTA+GGG | + | chr5.4:72615531-72615550 | None:intergenic | 20.0% |
| !!! | TTGTTTGGTTTTGTTTTTTT+AGG | + | chr5.4:72615532-72615551 | None:intergenic | 20.0% |
| ! | AAGCCATTAATATTTCATGA+TGG | - | chr5.4:72615334-72615353 | MS.gene038357:CDS | 25.0% |
| ! | CTTCCATCATGAAATATTAA+TGG | + | chr5.4:72615340-72615359 | None:intergenic | 25.0% |
| ! | GAACTAAACCTTAACAAATA+TGG | + | chr5.4:72615790-72615809 | None:intergenic | 25.0% |
| ! | GGATTCATCAAGAAAAAAAT+AGG | + | chr5.4:72615913-72615932 | None:intergenic | 25.0% |
| ! | TACAAATTAGCACTTGAATT+AGG | - | chr5.4:72615466-72615485 | MS.gene038357:CDS | 25.0% |
| ! | TCATGAAATATTAATGGCTT+TGG | + | chr5.4:72615334-72615353 | None:intergenic | 25.0% |
| !! | AATTCAAGTGCTAATTTGTA+AGG | + | chr5.4:72615466-72615485 | None:intergenic | 25.0% |
| !! | TCTTAATCTTCAAGTTTATG+AGG | - | chr5.4:72614642-72614661 | MS.gene038357:CDS | 25.0% |
| !! | TTGAGTGTACAAATTTTACT+AGG | - | chr5.4:72616055-72616074 | MS.gene038357:CDS | 25.0% |
| AATGATGTGCTTAAGAAAAC+AGG | + | chr5.4:72615595-72615614 | None:intergenic | 30.0% | |
| ACAAACAAAACACCTTTGTT+TGG | + | chr5.4:72615547-72615566 | None:intergenic | 30.0% | |
| AGAAAACCTGATATTGGAAT+TGG | - | chr5.4:72614862-72614881 | MS.gene038357:CDS | 30.0% | |
| ATAAGTATATGATGCTTGCA+GGG | - | chr5.4:72616082-72616101 | MS.gene038357:CDS | 30.0% | |
| ATGCAAAAGTTACTAAGAGA+AGG | - | chr5.4:72615724-72615743 | MS.gene038357:intron | 30.0% | |
| CTATATGTTACTGCAGTTAA+AGG | + | chr5.4:72615625-72615644 | None:intergenic | 30.0% | |
| GCAATTTATAGAATCCTTCT+TGG | - | chr5.4:72615430-72615449 | MS.gene038357:CDS | 30.0% | |
| GGCATAGATCTAAAAATCAA+AGG | - | chr5.4:72615499-72615518 | MS.gene038357:intron | 30.0% | |
| TCATATTCAAATTCTTGGGA+AGG | - | chr5.4:72615945-72615964 | MS.gene038357:CDS | 30.0% | |
| TGAATATGATAACTTGGCTT+AGG | + | chr5.4:72615934-72615953 | None:intergenic | 30.0% | |
| ! | AGTGTACAAATTTTACTAGG+AGG | - | chr5.4:72616058-72616077 | MS.gene038357:CDS | 30.0% |
| ! | GTAGAGAACCATATTTGTTA+AGG | - | chr5.4:72615779-72615798 | MS.gene038357:intron | 30.0% |
| ! | GTGTACAAATTTTACTAGGA+GGG | - | chr5.4:72616059-72616078 | MS.gene038357:CDS | 30.0% |
| ! | TTTAAAACTTACCTTGCAAG+TGG | + | chr5.4:72614920-72614939 | None:intergenic | 30.0% |
| !! | TTGAAAGAGTATTTGAGTGT+CGG | - | chr5.4:72614730-72614749 | MS.gene038357:CDS | 30.0% |
| !! | TTTTGTTTGTATGCACACAT+AGG | - | chr5.4:72615557-72615576 | MS.gene038357:intron | 30.0% |
| !!! | GTTAATCTCACTGTTTTGAT+TGG | + | chr5.4:72615676-72615695 | None:intergenic | 30.0% |
| !!! | TTTTTTTAAAGGGTTGGCAA+AGG | - | chr5.4:72614943-72614962 | MS.gene038357:CDS | 30.0% |
| AAACAATTGGGTGATGCTTT+GGG | - | chr5.4:72616030-72616049 | MS.gene038357:CDS | 35.0% | |
| AAGGAAGGAAAATACCAAGA+AGG | + | chr5.4:72615447-72615466 | None:intergenic | 35.0% | |
| AATCCTTCTACCATAACTCT+AGG | + | chr5.4:72614709-72614728 | None:intergenic | 35.0% | |
| ACAAGAGACAGAAAACAAGA+TGG | - | chr5.4:72615694-72615713 | MS.gene038357:intron | 35.0% | |
| ATTATTTCCTAACTACCGAC+CGG | - | chr5.4:72615004-72615023 | MS.gene038357:CDS | 35.0% | |
| GAAGTTCCAATTCCAATATC+AGG | + | chr5.4:72614871-72614890 | None:intergenic | 35.0% | |
| GATAAGTATATGATGCTTGC+AGG | - | chr5.4:72616081-72616100 | MS.gene038357:CDS | 35.0% | |
| GATTTAGTTGTTTGTCCTGA+AGG | - | chr5.4:72615748-72615767 | MS.gene038357:intron | 35.0% | |
| GGTGATAGAAAACCTGATAT+TGG | - | chr5.4:72614856-72614875 | MS.gene038357:CDS | 35.0% | |
| TAGCACTTGAATTAGGAGTT+TGG | - | chr5.4:72615473-72615492 | MS.gene038357:intron | 35.0% | |
| ! | ACTCATGTCAGCATGTTTTA+TGG | - | chr5.4:72615856-72615875 | MS.gene038357:CDS | 35.0% |
| ! | CAAGTGCTAATTTGTAAGGA+AGG | + | chr5.4:72615462-72615481 | None:intergenic | 35.0% |
| ! | CTCATGTCAGCATGTTTTAT+GGG | - | chr5.4:72615857-72615876 | MS.gene038357:CDS | 35.0% |
| ! | TAGTTCATTGTTTGCTGAGT+TGG | - | chr5.4:72615804-72615823 | MS.gene038357:intron | 35.0% |
| ! | TCTTTTCATTTCCACTTGCA+AGG | - | chr5.4:72614906-72614925 | MS.gene038357:CDS | 35.0% |
| ! | TGTTAAGCATAGAGCACTAA+AGG | - | chr5.4:72614825-72614844 | MS.gene038357:CDS | 35.0% |
| !! | AACATGTAGAGTGTTGCTAA+GGG | + | chr5.4:72615382-72615401 | None:intergenic | 35.0% |
| !!! | AGAGCACTAAAGGAGTATTT+TGG | - | chr5.4:72614835-72614854 | MS.gene038357:CDS | 35.0% |
| AAAGAACTTACATGTGCTGG+AGG | - | chr5.4:72615973-72615992 | MS.gene038357:CDS | 40.0% | |
| AACAATTGGGTGATGCTTTG+GGG | - | chr5.4:72616031-72616050 | MS.gene038357:CDS | 40.0% | |
| ACATGAGTATTCATTGCCAC+AGG | + | chr5.4:72615844-72615863 | None:intergenic | 40.0% | |
| ATACACCAGGTTTACAACAC+TGG | + | chr5.4:72615062-72615081 | None:intergenic | 40.0% | |
| ATGCACACATAGGACATTGT+TGG | - | chr5.4:72615567-72615586 | MS.gene038357:intron | 40.0% | |
| ATGTTCATGTGGCTACCAAT+TGG | - | chr5.4:72615397-72615416 | MS.gene038357:CDS | 40.0% | |
| CAACACTCTACATGTTCATG+TGG | - | chr5.4:72615386-72615405 | MS.gene038357:CDS | 40.0% | |
| CCAGCACATGTAAGTTCTTT+AGG | + | chr5.4:72615973-72615992 | None:intergenic | 40.0% | |
| CCTAAAGAACTTACATGTGC+TGG | - | chr5.4:72615970-72615989 | MS.gene038357:CDS | 40.0% | |
| CTTGAATTAGGAGTTTGGAG+TGG | - | chr5.4:72615478-72615497 | MS.gene038357:intron | 40.0% | |
| GAAACAATTGGGTGATGCTT+TGG | - | chr5.4:72616029-72616048 | MS.gene038357:CDS | 40.0% | |
| GAAATCGAACTCAATACACC+AGG | + | chr5.4:72615075-72615094 | None:intergenic | 40.0% | |
| TCCAAACTCAATCATGCCAA+GGG | - | chr5.4:72615300-72615319 | MS.gene038357:CDS | 40.0% | |
| TCTCTACATGTTGTTCCTTC+AGG | + | chr5.4:72615766-72615785 | None:intergenic | 40.0% | |
| TTATTTCCTAACTACCGACC+GGG | - | chr5.4:72615005-72615024 | MS.gene038357:CDS | 40.0% | |
| TTCCTGTCATAATCATGCAG+AGG | + | chr5.4:72615245-72615264 | None:intergenic | 40.0% | |
| ! | ACATTTGGTTGCTACTTCAC+TGG | - | chr5.4:72614778-72614797 | MS.gene038357:CDS | 40.0% |
| !! | AGGAAAGTCAAGTGTTGAAG+TGG | - | chr5.4:72615993-72616012 | MS.gene038357:CDS | 40.0% |
| !! | GAACATGTAGAGTGTTGCTA+AGG | + | chr5.4:72615383-72615402 | None:intergenic | 40.0% |
| !!! | ACTGGTTTTCTCACTAGTTC+TGG | - | chr5.4:72614796-72614815 | MS.gene038357:CDS | 40.0% |
| !!! | TTGAGTGTCGGTGATGTTTT+AGG | - | chr5.4:72614742-72614761 | MS.gene038357:CDS | 40.0% |
| ATGAGGTTCTTGCTTCAGCT+GGG | - | chr5.4:72614659-72614678 | MS.gene038357:CDS | 45.0% | |
| ATGATGCTTGCAGGGAATGA+AGG | - | chr5.4:72616090-72616109 | MS.gene038357:CDS | 45.0% | |
| CACAAGTGTGCCTAGAGTTA+TGG | - | chr5.4:72614696-72614715 | MS.gene038357:CDS | 45.0% | |
| CACCTCTGCATGATTATGAC+AGG | - | chr5.4:72615240-72615259 | MS.gene038357:CDS | 45.0% | |
| CTGTCATAATCATGCAGAGG+TGG | + | chr5.4:72615242-72615261 | None:intergenic | 45.0% | |
| GGCACAGAGTTACACACATT+TGG | - | chr5.4:72614763-72614782 | MS.gene038357:CDS | 45.0% | |
| GTCCAAACTCAATCATGCCA+AGG | - | chr5.4:72615299-72615318 | MS.gene038357:CDS | 45.0% | |
| GTGCCTAGAGTTATGGTAGA+AGG | - | chr5.4:72614703-72614722 | MS.gene038357:CDS | 45.0% | |
| TATGAGGTTCTTGCTTCAGC+TGG | - | chr5.4:72614658-72614677 | MS.gene038357:CDS | 45.0% | |
| TCCCTTGGCATGATTGAGTT+TGG | + | chr5.4:72615304-72615323 | None:intergenic | 45.0% | |
| TGATGCTTGCAGGGAATGAA+GGG | - | chr5.4:72616091-72616110 | MS.gene038357:CDS | 45.0% | |
| ! | TTTTATGGGACCACAGCAAG+CGG | - | chr5.4:72615871-72615890 | MS.gene038357:CDS | 45.0% |
| !! | AGCAAGCGGATTGAAGTGTT+TGG | - | chr5.4:72615885-72615904 | MS.gene038357:CDS | 45.0% |
| !! | GGCTTTGGATATTTGTCCCT+TGG | + | chr5.4:72615319-72615338 | None:intergenic | 45.0% |
| !! | TAGAGTGTTGCTAAGGGTGT+TGG | + | chr5.4:72615376-72615395 | None:intergenic | 45.0% |
| !!! | TTTTAAACAATTTTTTTAAA+GGG | - | chr5.4:72614933-72614952 | MS.gene038357:CDS | 5.0% |
| GGCTAATGAGATAGTGCCTG+TGG | - | chr5.4:72615825-72615844 | MS.gene038357:CDS | 50.0% | |
| GTGTGCCAGTGTTGTAAACC+TGG | - | chr5.4:72615054-72615073 | MS.gene038357:CDS | 50.0% | |
| ! | ACACTTCAATCCGCTTGCTG+TGG | + | chr5.4:72615884-72615903 | None:intergenic | 50.0% |
| CCAACTACTTGCGCTAGACC+CGG | + | chr5.4:72615026-72615045 | None:intergenic | 55.0% | |
| CCGGGTCTAGCGCAAGTAGT+TGG | - | chr5.4:72615023-72615042 | MS.gene038357:CDS | 60.0% | |
| CTACTTGCGCTAGACCCGGT+CGG | + | chr5.4:72615022-72615041 | None:intergenic | 60.0% | |
| GCTAGACCCGGTCGGTAGTT+AGG | + | chr5.4:72615014-72615033 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5.4 | gene | 72614595 | 72616152 | 72614595 | ID=MS.gene038357 |
| chr5.4 | mRNA | 72614595 | 72616152 | 72614595 | ID=MS.gene038357.t1;Parent=MS.gene038357 |
| chr5.4 | exon | 72615820 | 72616152 | 72615820 | ID=MS.gene038357.t1.exon1;Parent=MS.gene038357.t1 |
| chr5.4 | CDS | 72615820 | 72616152 | 72615820 | ID=cds.MS.gene038357.t1;Parent=MS.gene038357.t1 |
| chr5.4 | exon | 72614595 | 72615485 | 72614595 | ID=MS.gene038357.t1.exon2;Parent=MS.gene038357.t1 |
| chr5.4 | CDS | 72614595 | 72615485 | 72614595 | ID=cds.MS.gene038357.t1;Parent=MS.gene038357.t1 |
| Gene Sequence |
| Protein sequence |
