Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene038744.t1 | XP_024637764.1 | 94.6 | 570 | 28 | 1 | 1 | 570 | 1 | 567 | 5.00E-301 | 1043.1 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene038744.t1 | Q8GXJ1 | 64.8 | 506 | 166 | 4 | 84 | 586 | 41 | 537 | 1.1e-179 | 631.3 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene038744.t1 | A0A072URV0 | 93.7 | 574 | 33 | 1 | 1 | 574 | 40 | 610 | 1.0e-300 | 1041.6 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene044567 | MS.gene038744 | PPI |
| MS.gene038750 | MS.gene038744 | PPI |
| MS.gene060573 | MS.gene038744 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene038744.t1 | MTR_4g111985 | 96.637 | 565 | 16 | 2 | 1 | 565 | 1 | 562 | 0.0 | 1129 |
| MS.gene038744.t1 | MTR_4g111985 | 94.774 | 574 | 27 | 2 | 1 | 574 | 40 | 610 | 0.0 | 1044 |
| MS.gene038744.t1 | MTR_4g111985 | 96.356 | 494 | 15 | 2 | 1 | 494 | 1 | 491 | 0.0 | 988 |
| MS.gene038744.t1 | MTR_4g109500 | 41.972 | 355 | 191 | 6 | 204 | 546 | 23 | 374 | 1.02e-83 | 275 |
| MS.gene038744.t1 | MTR_4g109500 | 41.972 | 355 | 191 | 6 | 204 | 546 | 23 | 374 | 1.09e-83 | 275 |
| MS.gene038744.t1 | MTR_2g087270 | 32.544 | 338 | 218 | 6 | 221 | 551 | 50 | 384 | 8.17e-46 | 166 |
| MS.gene038744.t1 | MTR_8g093800 | 39.245 | 265 | 145 | 7 | 279 | 532 | 152 | 411 | 1.22e-45 | 167 |
| MS.gene038744.t1 | MTR_4g055080 | 28.750 | 240 | 157 | 8 | 326 | 562 | 111 | 339 | 1.42e-21 | 97.8 |
| MS.gene038744.t1 | MTR_4g055080 | 28.750 | 240 | 157 | 8 | 326 | 562 | 136 | 364 | 2.60e-21 | 97.4 |
| MS.gene038744.t1 | MTR_3g118535 | 25.735 | 272 | 185 | 10 | 221 | 482 | 37 | 301 | 8.06e-21 | 96.7 |
| MS.gene038744.t1 | MTR_3g077160 | 25.402 | 311 | 214 | 8 | 221 | 519 | 45 | 349 | 1.68e-20 | 95.5 |
| MS.gene038744.t1 | MTR_5g004640 | 24.382 | 283 | 175 | 8 | 221 | 482 | 40 | 304 | 3.10e-18 | 88.6 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene038744.t1 | AT3G18520 | 64.775 | 511 | 168 | 4 | 84 | 591 | 41 | 542 | 0.0 | 601 |
| MS.gene038744.t1 | AT3G18520 | 65.996 | 497 | 157 | 4 | 84 | 577 | 41 | 528 | 0.0 | 597 |
| MS.gene038744.t1 | AT3G18520 | 67.216 | 485 | 147 | 4 | 84 | 565 | 41 | 516 | 0.0 | 595 |
| MS.gene038744.t1 | AT3G18520 | 68.900 | 418 | 119 | 3 | 84 | 499 | 41 | 449 | 0.0 | 526 |
| MS.gene038744.t1 | AT5G61060 | 41.361 | 382 | 205 | 8 | 180 | 546 | 6 | 383 | 3.07e-84 | 277 |
| MS.gene038744.t1 | AT5G61060 | 40.933 | 386 | 205 | 9 | 180 | 546 | 6 | 387 | 6.18e-82 | 271 |
| MS.gene038744.t1 | AT5G61070 | 39.782 | 367 | 203 | 8 | 195 | 546 | 53 | 416 | 6.06e-80 | 266 |
| MS.gene038744.t1 | AT4G33470 | 33.690 | 374 | 205 | 13 | 170 | 521 | 46 | 398 | 6.53e-48 | 173 |
| MS.gene038744.t1 | AT1G08460 | 33.333 | 312 | 195 | 7 | 221 | 524 | 39 | 345 | 1.06e-40 | 152 |
| MS.gene038744.t1 | AT1G08460 | 35.000 | 240 | 150 | 5 | 221 | 456 | 39 | 276 | 5.93e-33 | 129 |
| MS.gene038744.t1 | AT4G38130 | 26.994 | 326 | 191 | 11 | 221 | 520 | 36 | 340 | 8.40e-21 | 96.3 |
| MS.gene038744.t1 | AT4G38130 | 26.994 | 326 | 191 | 11 | 221 | 520 | 36 | 340 | 1.32e-20 | 95.9 |
| MS.gene038744.t1 | AT5G63110 | 28.421 | 190 | 131 | 4 | 326 | 515 | 152 | 336 | 1.27e-19 | 92.8 |
| MS.gene038744.t1 | AT3G44680 | 28.643 | 199 | 134 | 5 | 326 | 524 | 136 | 326 | 6.84e-19 | 90.1 |
| MS.gene038744.t1 | AT4G09784 | 73.913 | 46 | 12 | 0 | 215 | 260 | 6 | 51 | 8.01e-17 | 75.5 |
Find 155 sgRNAs with CRISPR-Local
Find 0 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTTGCATCGGCAGTTATTTC+TGG | 0.083665 | 8.3:+13930348 | MS.gene038744:CDS |
| CGAAGTCGATCTGGCCTTTC+GGG | 0.116839 | 8.3:-13929262 | None:intergenic |
| CACATGTTGAATGCCCTTTC+TGG | 0.190069 | 8.3:+13933735 | MS.gene038744:CDS |
| GCATTGGCGGCCCAGGCTGC+AGG | 0.240046 | 8.3:+13930564 | MS.gene038744:CDS |
| ATCAAATCCTGCTGATATTA+TGG | 0.261921 | 8.3:-13933386 | None:intergenic |
| GCGGAGGTTGGCACAGGAAT+TGG | 0.278431 | 8.3:+13936058 | MS.gene038744:CDS |
| CCTTCGTAGCCCCTGCAGCC+TGG | 0.292929 | 8.3:-13930575 | None:intergenic |
| TCGAAGTCGATCTGGCCTTT+CGG | 0.303861 | 8.3:-13929263 | None:intergenic |
| GAGAAGATACATACGGAATT+AGG | 0.318167 | 8.3:-13926361 | None:intergenic |
| TCTATTGGAACAGGTATTAC+TGG | 0.322073 | 8.3:+13935211 | MS.gene038744:intron |
| ATACTTGGCTGGATCTCATC+TGG | 0.334911 | 8.3:-13927357 | None:intergenic |
| AATAGTTTCCCTACCAAATC+TGG | 0.341902 | 8.3:+13935260 | MS.gene038744:CDS |
| AGAGGGGAAGAAGGGACCCC+TGG | 0.365124 | 8.3:+13936084 | MS.gene038744:CDS |
| AACAGTTTGGAGGCCAGATT+TGG | 0.372142 | 8.3:-13935273 | None:intergenic |
| CAGCATGTTGTACTTCCTAT+AGG | 0.374163 | 8.3:+13932586 | MS.gene038744:CDS |
| GGCAACAGACATCATTGTTT+AGG | 0.376916 | 8.3:-13927086 | None:intergenic |
| AAAATATTCAAACAAGGAAC+AGG | 0.376968 | 8.3:-13936134 | None:intergenic |
| ACAACTCTTGGCTTTGATAC+AGG | 0.380517 | 8.3:-13926963 | None:intergenic |
| CATTGGCGGCCCAGGCTGCA+GGG | 0.382102 | 8.3:+13930565 | MS.gene038744:CDS |
| TTGCATCGGCAGTTATTTCT+GGG | 0.382630 | 8.3:+13930349 | MS.gene038744:CDS |
| GGAATTGAATGGCATCTTCC+TGG | 0.383668 | 8.3:-13929479 | None:intergenic |
| ATGATGAGGAGGACGATGAT+TGG | 0.390416 | 8.3:+13926995 | MS.gene038744:CDS |
| CTTCGTAGCCCCTGCAGCCT+GGG | 0.391205 | 8.3:-13930574 | None:intergenic |
| TGCTGCAGTGGCAGCATTGG+CGG | 0.393653 | 8.3:+13930551 | MS.gene038744:CDS |
| CGAGGACTTCGAAAACAGTT+TGG | 0.395135 | 8.3:-13935286 | None:intergenic |
| CGGAGGTTGGCACAGGAATT+GGG | 0.397260 | 8.3:+13936059 | MS.gene038744:CDS |
| GGAATTGAAGGTTCATTCTT+CGG | 0.409641 | 8.3:+13929981 | MS.gene038744:intron |
| GCAAACAGTTCTACGGCAAT+TGG | 0.410293 | 8.3:+13928298 | MS.gene038744:CDS |
| TGTGCTGCTAGGTTGGCAGC+TGG | 0.415728 | 8.3:+13930312 | MS.gene038744:CDS |
| TTGTCCTTTACTTCTACCCC+AGG | 0.420809 | 8.3:-13936102 | None:intergenic |
| AAAATGCTTGTTATTCTTGA+GGG | 0.421420 | 8.3:+13933762 | MS.gene038744:CDS |
| GCTGATATTATGGTAAAATC+TGG | 0.422974 | 8.3:-13933376 | None:intergenic |
| TTTCGTTGCAGAAAAGGGTC+AGG | 0.423360 | 8.3:+13926483 | MS.gene038744:intron |
| TGAGAGTCCTGTACCTGAAC+TGG | 0.426221 | 8.3:+13935235 | MS.gene038744:CDS |
| AATTGGGAGAGAGGGGAAGA+AGG | 0.430746 | 8.3:+13936075 | MS.gene038744:CDS |
| AGTCACATAGGTATATTTCC+AGG | 0.433775 | 8.3:+13929461 | MS.gene038744:intron |
| ATGATGATGAGGACGATGAT+TGG | 0.435547 | 8.3:+13926570 | MS.gene038744:CDS |
| AGTGGCAGCATTGGCGGCCC+AGG | 0.435884 | 8.3:+13930557 | MS.gene038744:CDS |
| TTGACTGCAGAAAAGGGTTA+AGG | 0.438290 | 8.3:+13926915 | MS.gene038744:intron |
| AAACCAAGACTTGTTTGATC+AGG | 0.441472 | 8.3:+13926541 | MS.gene038744:CDS |
| CATCCTCGTCAAACAACTCT+TGG | 0.444113 | 8.3:-13926975 | None:intergenic |
| ACAGCATTAGGCAGTGGATT+GGG | 0.444372 | 8.3:-13926671 | None:intergenic |
| CAGGATGTTCATCACGGAAA+TGG | 0.445304 | 8.3:+13930728 | MS.gene038744:intron |
| CTTTGGGAAATGCAATGTCT+TGG | 0.447271 | 8.3:+13935365 | MS.gene038744:CDS |
| ATGCAAAATGCCCACGGCTC+AGG | 0.448661 | 8.3:-13927311 | None:intergenic |
| TTTGGGAAATGCAATGTCTT+GGG | 0.449185 | 8.3:+13935366 | MS.gene038744:CDS |
| CGATCTGGCCTTTCGGGGTG+TGG | 0.454064 | 8.3:-13929256 | None:intergenic |
| TGATGAGGAGGACGATGATT+GGG | 0.458989 | 8.3:+13926996 | MS.gene038744:CDS |
| GCAATTGCTCGAAGTCGATC+TGG | 0.459181 | 8.3:-13929271 | None:intergenic |
| GTGCTGCTAGGTTGGCAGCT+GGG | 0.470291 | 8.3:+13930313 | MS.gene038744:CDS |
| CATCCTGATCAAACAAGTCT+TGG | 0.471025 | 8.3:-13926544 | None:intergenic |
| GAGAAGACGCTTACAGCATT+AGG | 0.476466 | 8.3:-13926683 | None:intergenic |
| GGATCTTCATCTTGTGCAAA+GGG | 0.477219 | 8.3:-13927336 | None:intergenic |
| TAATGCTGCAGTGGCAGCAT+TGG | 0.477717 | 8.3:+13930548 | MS.gene038744:CDS |
| TACAGCATTAGGCAGTGGAT+TGG | 0.478220 | 8.3:-13926672 | None:intergenic |
| ATCTTCTATGTACAGATATG+TGG | 0.478631 | 8.3:+13927267 | MS.gene038744:intron |
| ATTGGCGGCCCAGGCTGCAG+GGG | 0.479227 | 8.3:+13930566 | MS.gene038744:CDS |
| TTCTGCAACTGCAGTAATCA+AGG | 0.479783 | 8.3:+13933900 | MS.gene038744:CDS |
| AGACATTTCTGCAACTGAGT+TGG | 0.481819 | 8.3:-13927021 | None:intergenic |
| CTCGTGAGCACCTCCAGTAC+CGG | 0.488935 | 8.3:-13931733 | None:intergenic |
| GAAAAGGGTTAAGGTGCAAA+AGG | 0.489079 | 8.3:+13926924 | MS.gene038744:intron |
| TTCAGCATGTGCTGCTAGGT+TGG | 0.489674 | 8.3:+13930305 | MS.gene038744:CDS |
| GGATAGATAAATACCAGCTC+TGG | 0.490158 | 8.3:-13929305 | None:intergenic |
| GAGGGGAAGAAGGGACCCCT+GGG | 0.497588 | 8.3:+13936085 | MS.gene038744:CDS |
| TAAAATCAGGTTAGACCTCC+TGG | 0.499376 | 8.3:+13930480 | MS.gene038744:intron |
| CAGAAGCAAGCTGATGATGA+TGG | 0.499565 | 8.3:+13926602 | MS.gene038744:CDS |
| TCTTGAGTGATTTCTCTAGC+AGG | 0.501539 | 8.3:-13929500 | None:intergenic |
| TTTCTCTAGCAGGAATTGAA+TGG | 0.507359 | 8.3:-13929490 | None:intergenic |
| AGCACATGCTGAATGCTCAT+TGG | 0.509083 | 8.3:-13930295 | None:intergenic |
| GACCCCTGGGGTAGAAGTAA+AGG | 0.510964 | 8.3:+13936098 | MS.gene038744:CDS |
| TTCTTACATCGCAACCTCCA+AGG | 0.511040 | 8.3:-13933426 | None:intergenic |
| ATTGGGAGAGAGGGGAAGAA+GGG | 0.511843 | 8.3:+13936076 | MS.gene038744:CDS |
| TGATGATGAGGACGATGATT+GGG | 0.521594 | 8.3:+13926571 | MS.gene038744:CDS |
| CCAGGCTGCAGGGGCTACGA+AGG | 0.522208 | 8.3:+13930575 | MS.gene038744:CDS |
| TGTCCTTTACTTCTACCCCA+GGG | 0.522447 | 8.3:-13936101 | None:intergenic |
| CTATTGGAACAGGTATTACT+GGG | 0.522551 | 8.3:+13935212 | MS.gene038744:intron |
| TCTTCTATGTACAGATATGT+GGG | 0.527426 | 8.3:+13927268 | MS.gene038744:intron |
| AATAACTGCCGATGCAAGAT+CGG | 0.527658 | 8.3:-13930343 | None:intergenic |
| TTTACACCGGCATGATGACC+AGG | 0.528140 | 8.3:-13930498 | None:intergenic |
| GTAAGTGCGGAGGTTGGCAC+AGG | 0.529954 | 8.3:+13936052 | MS.gene038744:intron |
| ATTATGCAGATTACTCCCTC+TGG | 0.530460 | 8.3:+13933696 | MS.gene038744:intron |
| TCTTACATCGCAACCTCCAA+GGG | 0.531390 | 8.3:-13933425 | None:intergenic |
| TTACAAGCAAGTTAATGTCT+AGG | 0.531906 | 8.3:+13930025 | MS.gene038744:CDS |
| GCTAGAGGTGATCCCCTTGG+AGG | 0.534965 | 8.3:+13933412 | MS.gene038744:CDS |
| GCTGCTAGTCTTGCCAGAGC+TGG | 0.535153 | 8.3:+13929292 | MS.gene038744:CDS |
| CACTCAAGAAGAACTGATGA+TGG | 0.535203 | 8.3:+13929514 | MS.gene038744:CDS |
| GCTGCTAGAGGTGATCCCCT+TGG | 0.536365 | 8.3:+13933409 | MS.gene038744:CDS |
| GTTGTTTGACGAGGATGATG+AGG | 0.540216 | 8.3:+13926981 | MS.gene038744:CDS |
| TTAAAGATAGGTTTCAAGGA+AGG | 0.543946 | 8.3:-13935329 | None:intergenic |
| TCATCAGCTTGCTTCTGAGA+TGG | 0.545120 | 8.3:-13926596 | None:intergenic |
| TTTGGAGGCCAGATTTGGTA+GGG | 0.545315 | 8.3:-13935268 | None:intergenic |
| GGCACAGGAATTGGGAGAGA+GGG | 0.552673 | 8.3:+13936067 | MS.gene038744:CDS |
| AGACCTCCTGGTCATCATGC+CGG | 0.553312 | 8.3:+13930492 | MS.gene038744:CDS |
| GGACTTCGAAAACAGTTTGG+AGG | 0.554541 | 8.3:-13935283 | None:intergenic |
| ACGCTTACAGCATTAGGCAG+TGG | 0.556477 | 8.3:-13926677 | None:intergenic |
| GTTGGTTATATGGGTGCAGA+AGG | 0.559442 | 8.3:+13932499 | MS.gene038744:CDS |
| GTTTGGAGGCCAGATTTGGT+AGG | 0.560072 | 8.3:-13935269 | None:intergenic |
| TGGATCTTCATCTTGTGCAA+AGG | 0.561337 | 8.3:-13927337 | None:intergenic |
| TTCGGAGCATATTGAATCTG+TGG | 0.564076 | 8.3:+13929999 | MS.gene038744:CDS |
| GTTACTGTGTGAATATTCCA+TGG | 0.566581 | 8.3:+13932521 | MS.gene038744:CDS |
| CCTTCACAATAATGCTGCAG+TGG | 0.574540 | 8.3:+13930539 | MS.gene038744:CDS |
| CCAACACCACCTCGACTCCA+TGG | 0.574845 | 8.3:-13932538 | None:intergenic |
| CCACTGCAGCATTATTGTGA+AGG | 0.576647 | 8.3:-13930539 | None:intergenic |
| TGCCGGTGTAAAAGATGTGA+TGG | 0.577642 | 8.3:+13930509 | MS.gene038744:CDS |
| ATTCTAAAATCCTGAGCCGT+GGG | 0.578392 | 8.3:+13927301 | MS.gene038744:CDS |
| TGCTTGTTATTCTTGAGGGG+GGG | 0.581434 | 8.3:+13933766 | MS.gene038744:CDS |
| ATCAGCAGCAAACAGTTCTA+CGG | 0.584811 | 8.3:+13928291 | MS.gene038744:CDS |
| TTCGTTGCAGAAAAGGGTCA+GGG | 0.586426 | 8.3:+13926484 | MS.gene038744:intron |
| GTCCTTTACTTCTACCCCAG+GGG | 0.587054 | 8.3:-13936100 | None:intergenic |
| CCATGGAGTCGAGGTGGTGT+TGG | 0.588677 | 8.3:+13932538 | MS.gene038744:CDS |
| ATGCTTGTTATTCTTGAGGG+GGG | 0.588693 | 8.3:+13933765 | MS.gene038744:CDS |
| GACCTTGTAAGTGCGGAGGT+TGG | 0.594919 | 8.3:+13936046 | MS.gene038744:intron |
| GATTCTAAAATCCTGAGCCG+TGG | 0.595608 | 8.3:+13927300 | MS.gene038744:CDS |
| TACGGAATTAGGCGGTGGCA+TGG | 0.595758 | 8.3:-13926350 | None:intergenic |
| ATGTTGAATGCCCTTTCTGG+TGG | 0.598032 | 8.3:+13933738 | MS.gene038744:CDS |
| AATGCTTGTTATTCTTGAGG+GGG | 0.598743 | 8.3:+13933764 | MS.gene038744:CDS |
| GCCGGTGTAAAAGATGTGAT+GGG | 0.602652 | 8.3:+13930510 | MS.gene038744:CDS |
| CAAGCTGATGATGATGGAGT+TGG | 0.606625 | 8.3:+13926608 | MS.gene038744:CDS |
| TGGCACAGGAATTGGGAGAG+AGG | 0.609766 | 8.3:+13936066 | MS.gene038744:CDS |
| GTTATGTGCCGATCTTGCAT+CGG | 0.611910 | 8.3:+13930335 | MS.gene038744:CDS |
| TCGTGAGCACCTCCAGTACC+GGG | 0.612589 | 8.3:-13931732 | None:intergenic |
| ATACATACGGAATTAGGCGG+TGG | 0.617573 | 8.3:-13926355 | None:intergenic |
| GCACAGGAATTGGGAGAGAG+GGG | 0.617849 | 8.3:+13936068 | MS.gene038744:CDS |
| CGGTACTGGAGGTGCTCACG+AGG | 0.622536 | 8.3:+13931734 | MS.gene038744:CDS |
| AATCACGTCCACACCCCGAA+AGG | 0.623126 | 8.3:+13929248 | MS.gene038744:CDS |
| AATGTCTCGAAGTCATCAAG+TGG | 0.624301 | 8.3:+13927037 | MS.gene038744:CDS |
| GAAGTCGATCTGGCCTTTCG+GGG | 0.624468 | 8.3:-13929261 | None:intergenic |
| AAATGCTTGTTATTCTTGAG+GGG | 0.625092 | 8.3:+13933763 | MS.gene038744:CDS |
| TATATCATTGCATAGACATG+AGG | 0.626961 | 8.3:+13931695 | MS.gene038744:CDS |
| GCAGGATTTGATGCTGCTAG+AGG | 0.629426 | 8.3:+13933397 | MS.gene038744:CDS |
| TCATTGCATAGACATGAGGA+TGG | 0.631549 | 8.3:+13931699 | MS.gene038744:CDS |
| GTTTGACGAGGATGATGAGG+AGG | 0.631710 | 8.3:+13926984 | MS.gene038744:CDS |
| GTCATCTGTGCATAGCCAGA+GGG | 0.635405 | 8.3:-13933711 | None:intergenic |
| TGAAACTTCATCGATGACAT+CGG | 0.641947 | 8.3:-13926645 | None:intergenic |
| AGGGAGATGCAAAATGCCCA+CGG | 0.648259 | 8.3:-13927317 | None:intergenic |
| TGATGAACTCGATGCTGCTG+AGG | 0.649185 | 8.3:+13926327 | MS.gene038744:CDS |
| ATGCTCATTGGCGTATGTGT+CGG | 0.660374 | 8.3:-13930283 | None:intergenic |
| GCTTCTAAAATATTCAAACA+AGG | 0.660463 | 8.3:-13936140 | None:intergenic |
| AGCATTCAGCATGTGCTGCT+AGG | 0.661436 | 8.3:+13930301 | MS.gene038744:CDS |
| GTGAATATTCCATGGAGTCG+AGG | 0.673165 | 8.3:+13932529 | MS.gene038744:CDS |
| AAGCCAAGAGTTGTTTGACG+AGG | 0.677592 | 8.3:+13926972 | MS.gene038744:CDS |
| GGTTGACCTTGTAAGTGCGG+AGG | 0.678196 | 8.3:+13936042 | MS.gene038744:intron |
| TCATTGCAGGATGTTCATCA+CGG | 0.680384 | 8.3:+13930722 | MS.gene038744:intron |
| AAATATTCAAACAAGGAACA+GGG | 0.683481 | 8.3:-13936133 | None:intergenic |
| ATCGATGACATCGGACACCG+AGG | 0.689241 | 8.3:-13926636 | None:intergenic |
| TCATCACGGAAATGGCACAC+AGG | 0.691950 | 8.3:+13930736 | MS.gene038744:CDS |
| AGGGGAAGAAGGGACCCCTG+GGG | 0.694650 | 8.3:+13936086 | MS.gene038744:CDS |
| AAGATACATACGGAATTAGG+CGG | 0.700502 | 8.3:-13926358 | None:intergenic |
| CTTCTATGTACAGATATGTG+GGG | 0.701865 | 8.3:+13927269 | MS.gene038744:intron |
| TGATGGAGTTGGTCAGACCT+CGG | 0.704052 | 8.3:+13926619 | MS.gene038744:CDS |
| TGTCATCTGTGCATAGCCAG+AGG | 0.715415 | 8.3:-13933712 | None:intergenic |
| ACACCGGCATGATGACCAGG+AGG | 0.734651 | 8.3:-13930495 | None:intergenic |
| CCGGTGTAAAAGATGTGATG+GGG | 0.737323 | 8.3:+13930511 | MS.gene038744:CDS |
| CTTACATCGCAACCTCCAAG+GGG | 0.737439 | 8.3:-13933424 | None:intergenic |
| AATATTCCATGGAGTCGAGG+TGG | 0.740997 | 8.3:+13932532 | MS.gene038744:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8.3 | gene | 13926304 | 13936181 | 13926304 | ID=MS.gene038744 |
| chr8.3 | mRNA | 13926304 | 13936181 | 13926304 | ID=MS.gene038744.t1;Parent=MS.gene038744 |
| chr8.3 | exon | 13926304 | 13926369 | 13926304 | ID=MS.gene038744.t1.exon1;Parent=MS.gene038744.t1 |
| chr8.3 | CDS | 13926304 | 13926369 | 13926304 | ID=cds.MS.gene038744.t1;Parent=MS.gene038744.t1 |
| chr8.3 | exon | 13926494 | 13926691 | 13926494 | ID=MS.gene038744.t1.exon2;Parent=MS.gene038744.t1 |
| chr8.3 | CDS | 13926494 | 13926691 | 13926494 | ID=cds.MS.gene038744.t1;Parent=MS.gene038744.t1 |
| chr8.3 | exon | 13926925 | 13927110 | 13926925 | ID=MS.gene038744.t1.exon3;Parent=MS.gene038744.t1 |
| chr8.3 | CDS | 13926925 | 13927110 | 13926925 | ID=cds.MS.gene038744.t1;Parent=MS.gene038744.t1 |
| chr8.3 | exon | 13927282 | 13927393 | 13927282 | ID=MS.gene038744.t1.exon4;Parent=MS.gene038744.t1 |
| chr8.3 | CDS | 13927282 | 13927393 | 13927282 | ID=cds.MS.gene038744.t1;Parent=MS.gene038744.t1 |
| chr8.3 | exon | 13928275 | 13928351 | 13928275 | ID=MS.gene038744.t1.exon5;Parent=MS.gene038744.t1 |
| chr8.3 | CDS | 13928275 | 13928351 | 13928275 | ID=cds.MS.gene038744.t1;Parent=MS.gene038744.t1 |
| chr8.3 | exon | 13929238 | 13929313 | 13929238 | ID=MS.gene038744.t1.exon6;Parent=MS.gene038744.t1 |
| chr8.3 | CDS | 13929238 | 13929313 | 13929238 | ID=cds.MS.gene038744.t1;Parent=MS.gene038744.t1 |
| chr8.3 | exon | 13929471 | 13929535 | 13929471 | ID=MS.gene038744.t1.exon7;Parent=MS.gene038744.t1 |
| chr8.3 | CDS | 13929471 | 13929535 | 13929471 | ID=cds.MS.gene038744.t1;Parent=MS.gene038744.t1 |
| chr8.3 | exon | 13929991 | 13930046 | 13929991 | ID=MS.gene038744.t1.exon8;Parent=MS.gene038744.t1 |
| chr8.3 | CDS | 13929991 | 13930046 | 13929991 | ID=cds.MS.gene038744.t1;Parent=MS.gene038744.t1 |
| chr8.3 | exon | 13930272 | 13930395 | 13930272 | ID=MS.gene038744.t1.exon9;Parent=MS.gene038744.t1 |
| chr8.3 | CDS | 13930272 | 13930395 | 13930272 | ID=cds.MS.gene038744.t1;Parent=MS.gene038744.t1 |
| chr8.3 | exon | 13930489 | 13930614 | 13930489 | ID=MS.gene038744.t1.exon10;Parent=MS.gene038744.t1 |
| chr8.3 | CDS | 13930489 | 13930614 | 13930489 | ID=cds.MS.gene038744.t1;Parent=MS.gene038744.t1 |
| chr8.3 | exon | 13930731 | 13930781 | 13930731 | ID=MS.gene038744.t1.exon11;Parent=MS.gene038744.t1 |
| chr8.3 | CDS | 13930731 | 13930781 | 13930731 | ID=cds.MS.gene038744.t1;Parent=MS.gene038744.t1 |
| chr8.3 | exon | 13931687 | 13931755 | 13931687 | ID=MS.gene038744.t1.exon12;Parent=MS.gene038744.t1 |
| chr8.3 | CDS | 13931687 | 13931755 | 13931687 | ID=cds.MS.gene038744.t1;Parent=MS.gene038744.t1 |
| chr8.3 | exon | 13932499 | 13932607 | 13932499 | ID=MS.gene038744.t1.exon13;Parent=MS.gene038744.t1 |
| chr8.3 | CDS | 13932499 | 13932607 | 13932499 | ID=cds.MS.gene038744.t1;Parent=MS.gene038744.t1 |
| chr8.3 | exon | 13933362 | 13933441 | 13933362 | ID=MS.gene038744.t1.exon14;Parent=MS.gene038744.t1 |
| chr8.3 | CDS | 13933362 | 13933441 | 13933362 | ID=cds.MS.gene038744.t1;Parent=MS.gene038744.t1 |
| chr8.3 | exon | 13933705 | 13933787 | 13933705 | ID=MS.gene038744.t1.exon15;Parent=MS.gene038744.t1 |
| chr8.3 | CDS | 13933705 | 13933787 | 13933705 | ID=cds.MS.gene038744.t1;Parent=MS.gene038744.t1 |
| chr8.3 | exon | 13933876 | 13933921 | 13933876 | ID=MS.gene038744.t1.exon16;Parent=MS.gene038744.t1 |
| chr8.3 | CDS | 13933876 | 13933921 | 13933876 | ID=cds.MS.gene038744.t1;Parent=MS.gene038744.t1 |
| chr8.3 | exon | 13935224 | 13935395 | 13935224 | ID=MS.gene038744.t1.exon17;Parent=MS.gene038744.t1 |
| chr8.3 | CDS | 13935224 | 13935395 | 13935224 | ID=cds.MS.gene038744.t1;Parent=MS.gene038744.t1 |
| chr8.3 | exon | 13936057 | 13936181 | 13936057 | ID=MS.gene038744.t1.exon18;Parent=MS.gene038744.t1 |
| chr8.3 | CDS | 13936057 | 13936181 | 13936057 | ID=cds.MS.gene038744.t1;Parent=MS.gene038744.t1 |
| Gene Sequence |
| Protein sequence |
