AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene039307

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene039307.t1 MTR_2g072850 96.765 340 10 1 1 340 32 370 0.0 689
MS.gene039307.t1 MTR_1g086170 61.357 339 127 2 1 338 110 445 4.20e-156 447
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene039307.t1 AT1G17030 68.529 340 102 3 1 338 122 458 5.62e-173 490
MS.gene039307.t1 AT2G47010 63.529 340 119 3 1 339 119 454 3.08e-158 451
MS.gene039307.t1 AT2G47010 63.717 339 118 3 1 338 119 453 1.56e-157 451
MS.gene039307.t1 AT2G47010 63.717 339 118 3 1 338 119 453 1.56e-157 451

Find 100 sgRNAs with CRISPR-Local

Find 128 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTCCAAGACCATGGCAATTT+TGG 0.091904 2.2:+19813976 MS.gene039307:CDS
CACAATTATACACAAGTTTA+TGG 0.134200 2.2:+19814134 MS.gene039307:CDS
GCTACTAATGATGCAAATTT+AGG 0.188556 2.2:+19814209 MS.gene039307:CDS
AAACCGGATGCGGCAAAATT+TGG 0.201953 2.2:-19815190 None:intergenic
TCCAAGTACATTGCATTTCC+TGG 0.273511 2.2:-19815113 None:intergenic
TTGCACAACGGTTCAGCTTC+CGG 0.278414 2.2:-19814978 None:intergenic
TATGTCCATTTCACTGTATC+TGG 0.292490 2.2:-19814952 None:intergenic
TGCACAACGGTTCAGCTTCC+GGG 0.310446 2.2:-19814977 None:intergenic
ACATCAAGCTCCCAAGTTCT+TGG 0.314890 2.2:-19815263 None:intergenic
CAACCTTCACCTTTCTTTGT+TGG 0.329279 2.2:-19815230 None:intergenic
ATAGAGAAGGTAGGCATCAT+AGG 0.363316 2.2:-19815084 None:intergenic
TCAATCTCTCTATTTCTATC+AGG 0.367083 2.2:+19815298 MS.gene039307:CDS
TCATGCCTCTAGTTTCATAA+TGG 0.367780 2.2:-19814388 None:intergenic
CCATGTCCATGAGGTAGAAT+TGG 0.377010 2.2:-19814872 None:intergenic
ATCATGAGAGGAAGTTTCTA+TGG 0.378260 2.2:+19814170 MS.gene039307:CDS
TGAGGCTGCGGGTTGCTATA+CGG 0.379761 2.2:-19815158 None:intergenic
GGAAAATCATGTTGTGGAAA+TGG 0.382470 2.2:-19814071 None:intergenic
ACCTTAAAATGTGGTGACTT+TGG 0.393098 2.2:-19814807 None:intergenic
ATCCAAAATTGCCATGGTCT+TGG 0.394270 2.2:-19813978 None:intergenic
CCGTCTCTGTTCGATGAACT+CGG 0.402049 2.2:-19815052 None:intergenic
AGGAAGTTGGTAATGGAAGT+TGG 0.407243 2.2:+19814273 MS.gene039307:CDS
CATCCGGTTTGGGGTGAGTA+CGG 0.413935 2.2:+19815203 MS.gene039307:CDS
TGCAATGTACTTGGAGAAAC+CGG 0.418599 2.2:+19815121 MS.gene039307:CDS
GGGCATTGTTCAAGATGGTT+GGG 0.426258 2.2:-19815002 None:intergenic
CTTCTTATTACTCTGTGACT+TGG 0.440834 2.2:+19814246 MS.gene039307:CDS
ATGAGGTAGAATTGGCTCCT+TGG 0.441517 2.2:-19814864 None:intergenic
TTCTTATTACTCTGTGACTT+GGG 0.445178 2.2:+19814247 MS.gene039307:CDS
GAGGAAGTTTCTATGGTTCA+TGG 0.446828 2.2:+19814177 MS.gene039307:CDS
AGACTTCTTCTAAATATCCT+TGG 0.453758 2.2:+19814315 MS.gene039307:CDS
AGGGCATTGTTCAAGATGGT+TGG 0.468016 2.2:-19815003 None:intergenic
TACCTTCTCTATCGTGCTCC+AGG 0.468070 2.2:+19815095 MS.gene039307:CDS
GTATAATTGTGGTACATTGA+TGG 0.474403 2.2:-19814122 None:intergenic
GGATTGGTGATCCAAGAACT+TGG 0.474749 2.2:+19815252 MS.gene039307:CDS
TACCCGTACTCACCCCAAAC+CGG 0.475777 2.2:-19815206 None:intergenic
GATGCTACTACAGGATTCTC+TGG 0.483171 2.2:+19814359 MS.gene039307:CDS
ACAATGGAAAGTCGTGCGAC+GGG 0.483269 2.2:+19814910 MS.gene039307:CDS
CCTTGGAAGGAGTTATACTT+AGG 0.487242 2.2:+19813930 MS.gene039307:CDS
CTTAGATCAGATGCTACTAC+AGG 0.490538 2.2:+19814350 MS.gene039307:CDS
TCCAGGAAATGCAATGTACT+TGG 0.491818 2.2:+19815112 MS.gene039307:CDS
CCTTATCATACCTTCTCAAA+TGG 0.492181 2.2:+19815026 MS.gene039307:CDS
GTAGGCATCATAGGGGAACT+TGG 0.493859 2.2:-19815075 None:intergenic
TGTAACCAGATACAGTGAAA+TGG 0.494064 2.2:+19814947 MS.gene039307:CDS
TGGGAGAAGGAAGTTGGTAA+TGG 0.497371 2.2:+19814266 MS.gene039307:CDS
CACTTGATATCAAGAAAGGA+GGG 0.497483 2.2:+19814838 MS.gene039307:CDS
TAGAGAAGGTAGGCATCATA+GGG 0.498127 2.2:-19815083 None:intergenic
TCATGGACATGGGAAGTTGT+TGG 0.502759 2.2:+19814883 MS.gene039307:CDS
GGAGTATCTCTTGAGGCTGC+GGG 0.502864 2.2:-19815169 None:intergenic
TGGAGTATCTCTTGAGGCTG+CGG 0.503368 2.2:-19815170 None:intergenic
AGGAAGTTTCTATGGTTCAT+GGG 0.503598 2.2:+19814178 MS.gene039307:CDS
TACTCACCCCAAACCGGATG+CGG 0.504821 2.2:-19815200 None:intergenic
CCAATTCTACCTCATGGACA+TGG 0.511723 2.2:+19814872 MS.gene039307:CDS
AGAACTTGGGAGCTTGATGT+TGG 0.511845 2.2:+19815266 MS.gene039307:CDS
ATCCGGTTTGGGGTGAGTAC+GGG 0.517936 2.2:+19815204 MS.gene039307:CDS
TTCACACTTGATATCAAGAA+AGG 0.518734 2.2:+19814834 MS.gene039307:CDS
TTACTCTGTGACTTGGGAGA+AGG 0.525821 2.2:+19814253 MS.gene039307:CDS
CAACAAAGAAAGGTGAAGGT+TGG 0.528934 2.2:+19815231 MS.gene039307:CDS
CCATTTGAGAAGGTATGATA+AGG 0.536448 2.2:-19815026 None:intergenic
TACGGGTATCCAACAAAGAA+AGG 0.538937 2.2:+19815221 MS.gene039307:CDS
GTGACTTGGGAGAAGGAAGT+TGG 0.540559 2.2:+19814260 MS.gene039307:CDS
CATAAACTTGTGTATAATTG+TGG 0.541605 2.2:-19814133 None:intergenic
TGGATGATAATGCTCAAAAG+TGG 0.542138 2.2:+19813996 MS.gene039307:CDS
AAGAAAGGTGAAGGTTGGAT+TGG 0.543649 2.2:+19815236 MS.gene039307:CDS
AAGGAGCCAATTCTACCTCA+TGG 0.546884 2.2:+19814866 MS.gene039307:CDS
AAGGAGGGCATTGTTCAAGA+TGG 0.555638 2.2:-19815007 None:intergenic
CCTAAGTATAACTCCTTCCA+AGG 0.572025 2.2:-19813930 None:intergenic
CGTCTCTGTTCGATGAACTC+GGG 0.576767 2.2:-19815051 None:intergenic
AGACATGTATGCACCTTGGA+AGG 0.578390 2.2:+19813917 None:intergenic
TACGGATCAGATGGTATCAC+CGG 0.581588 2.2:-19815140 None:intergenic
AACAATGGAAAGTCGTGCGA+CGG 0.584086 2.2:+19814909 MS.gene039307:CDS
AACTCGGGTGCCATTTGAGA+AGG 0.584910 2.2:-19815036 None:intergenic
GATTGGTGATCCAAGAACTT+GGG 0.585095 2.2:+19815253 MS.gene039307:CDS
TTTGAGAAGGTATGATAAGG+AGG 0.588832 2.2:-19815023 None:intergenic
AATGCTCAAAAGTGGAAACA+TGG 0.590612 2.2:+19814004 MS.gene039307:CDS
ATTGAGAAGAAGATCATGAG+AGG 0.595929 2.2:+19814158 MS.gene039307:CDS
GGAAGTTGTTGGAAGAACAA+TGG 0.597086 2.2:+19814894 MS.gene039307:CDS
AGATGGTTGGGTTTGCACAA+CGG 0.608803 2.2:-19814990 None:intergenic
AAGCAAGGAAAATCATGTTG+TGG 0.610626 2.2:-19814077 None:intergenic
ATGCAGACATGTATGCACCT+TGG 0.613410 2.2:+19813913 None:intergenic
ATTATCATCCAAAATTGCCA+TGG 0.616372 2.2:-19813984 None:intergenic
CAGTGAAATGGACATAAACC+CGG 0.617735 2.2:+19814959 MS.gene039307:CDS
TATCCAACAAAGAAAGGTGA+AGG 0.620362 2.2:+19815227 MS.gene039307:CDS
ACACTTGATATCAAGAAAGG+AGG 0.620950 2.2:+19814837 MS.gene039307:CDS
CTTGATATCAAGAAAGGAGG+GGG 0.623013 2.2:+19814840 MS.gene039307:CDS
CAATTCTACCTCATGGACAT+GGG 0.628930 2.2:+19814873 MS.gene039307:CDS
AAAATTTGGAGTATCTCTTG+AGG 0.629876 2.2:-19815176 None:intergenic
TAGAAGAAGTCTTCAACACA+TGG 0.632132 2.2:-19814304 None:intergenic
ATACACCCTTCTCCAAAGCA+AGG 0.632828 2.2:-19814092 None:intergenic
TTGAGAAGGTATGATAAGGA+GGG 0.638440 2.2:-19815022 None:intergenic
GGGTTGCTATACGGATCAGA+TGG 0.640280 2.2:-19815149 None:intergenic
ACTTGATATCAAGAAAGGAG+GGG 0.653164 2.2:+19814839 MS.gene039307:CDS
TTCCTGGAGCACGATAGAGA+AGG 0.658420 2.2:-19815097 None:intergenic
CCGAGTTCATCGAACAGAGA+CGG 0.661775 2.2:+19815052 MS.gene039307:CDS
CAATGGAAAGTCGTGCGACG+GGG 0.665911 2.2:+19814911 MS.gene039307:CDS
CTAAGATAAAGCATCAACCA+AGG 0.667233 2.2:-19814332 None:intergenic
TGGAGCACGATAGAGAAGGT+AGG 0.668058 2.2:-19815093 None:intergenic
GGTTACCATTATGAAACTAG+AGG 0.672011 2.2:+19814383 MS.gene039307:CDS
AACAACTTCCCATGTCCATG+AGG 0.684995 2.2:-19814881 None:intergenic
GCTACTACAGGATTCTCTGG+TGG 0.687235 2.2:+19814362 MS.gene039307:CDS
GTGAACATTACCTTAAAATG+TGG 0.687790 2.2:-19814816 None:intergenic
AGAGAAGGTAGGCATCATAG+GGG 0.755842 2.2:-19815082 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TTATTAGTAAATACTGAAAT+TGG + chr2.2:19814461-19814480 MS.gene039307:intron 15.0%
!!! ATTTTATTTTATATGATGGA+TGG - chr2.2:19814777-19814796 None:intergenic 15.0%
!! CTAATAAACTAAAAGTAGAA+AGG - chr2.2:19814435-19814454 None:intergenic 20.0%
!! GATAACATATTTAAACAAGA+GGG + chr2.2:19814661-19814680 MS.gene039307:intron 20.0%
!! TGATAACATATTTAAACAAG+AGG + chr2.2:19814660-19814679 MS.gene039307:intron 20.0%
! ATACTTAGGTAAAAAATGTG+AGG + chr2.2:19813944-19813963 MS.gene039307:CDS 25.0%
! CACAATTATACACAAGTTTA+TGG + chr2.2:19814134-19814153 MS.gene039307:CDS 25.0%
! CATAAACTTGTGTATAATTG+TGG - chr2.2:19814136-19814155 None:intergenic 25.0%
! TGCAACATCAAAATATATCA+AGG + chr2.2:19814703-19814722 MS.gene039307:intron 25.0%
AAGCTAAGTCAATAATGTCA+CGG + chr2.2:19814630-19814649 MS.gene039307:intron 30.0%
AGACTTCTTCTAAATATCCT+TGG + chr2.2:19814315-19814334 MS.gene039307:CDS 30.0%
ATTATCATCCAAAATTGCCA+TGG - chr2.2:19813987-19814006 None:intergenic 30.0%
GCTACTAATGATGCAAATTT+AGG + chr2.2:19814209-19814228 MS.gene039307:CDS 30.0%
GTATAATTGTGGTACATTGA+TGG - chr2.2:19814125-19814144 None:intergenic 30.0%
GTGAACATTACCTTAAAATG+TGG - chr2.2:19814819-19814838 None:intergenic 30.0%
TCTACTCCATAAAATACCAA+CGG - chr2.2:19814576-19814595 None:intergenic 30.0%
TTCACACTTGATATCAAGAA+AGG + chr2.2:19814834-19814853 MS.gene039307:CDS 30.0%
TTCTTATTACTCTGTGACTT+GGG + chr2.2:19814247-19814266 MS.gene039307:CDS 30.0%
! AAAATTTGGAGTATCTCTTG+AGG - chr2.2:19815179-19815198 None:intergenic 30.0%
!! TCAATCTCTCTATTTCTATC+AGG + chr2.2:19815298-19815317 MS.gene039307:CDS 30.0%
!!! TCAGCTTTGAAACCATTTTT+TGG - chr2.2:19814050-19814069 None:intergenic 30.0%
AAGCAAGGAAAATCATGTTG+TGG - chr2.2:19814080-19814099 None:intergenic 35.0%
AATGCTCAAAAGTGGAAACA+TGG + chr2.2:19814004-19814023 MS.gene039307:CDS 35.0%
ACACTTGATATCAAGAAAGG+AGG + chr2.2:19814837-19814856 MS.gene039307:CDS 35.0%
ACCTTAAAATGTGGTGACTT+TGG - chr2.2:19814810-19814829 None:intergenic 35.0%
ACTTGATATCAAGAAAGGAG+GGG + chr2.2:19814839-19814858 MS.gene039307:CDS 35.0%
AGGAAGTTTCTATGGTTCAT+GGG + chr2.2:19814178-19814197 MS.gene039307:CDS 35.0%
ATCATGAGAGGAAGTTTCTA+TGG + chr2.2:19814170-19814189 MS.gene039307:CDS 35.0%
ATTGAGAAGAAGATCATGAG+AGG + chr2.2:19814158-19814177 MS.gene039307:CDS 35.0%
CACTTGATATCAAGAAAGGA+GGG + chr2.2:19814838-19814857 MS.gene039307:CDS 35.0%
CCTTATCATACCTTCTCAAA+TGG + chr2.2:19815026-19815045 MS.gene039307:CDS 35.0%
CTTCTTATTACTCTGTGACT+TGG + chr2.2:19814246-19814265 MS.gene039307:CDS 35.0%
GATAACACGAGAGTCTAAAT+TGG - chr2.2:19814501-19814520 None:intergenic 35.0%
GCTGCAATTTGTCCAAAAAA+TGG + chr2.2:19814035-19814054 MS.gene039307:CDS 35.0%
GGAAAATCATGTTGTGGAAA+TGG - chr2.2:19814074-19814093 None:intergenic 35.0%
GGTTACCATTATGAAACTAG+AGG + chr2.2:19814383-19814402 MS.gene039307:CDS 35.0%
GTCGTTAATTGGAAATACCA+TGG + chr2.2:19814598-19814617 MS.gene039307:intron 35.0%
TAGAAGAAGTCTTCAACACA+TGG - chr2.2:19814307-19814326 None:intergenic 35.0%
TATCCAACAAAGAAAGGTGA+AGG + chr2.2:19815227-19815246 MS.gene039307:CDS 35.0%
TATGTCCATTTCACTGTATC+TGG - chr2.2:19814955-19814974 None:intergenic 35.0%
TGGAGTAGAATGTCGTTAAT+TGG + chr2.2:19814587-19814606 MS.gene039307:intron 35.0%
TGTAACCAGATACAGTGAAA+TGG + chr2.2:19814947-19814966 MS.gene039307:CDS 35.0%
! ACCAAAGTCACCACATTTTA+AGG + chr2.2:19814806-19814825 MS.gene039307:CDS 35.0%
! CAACATGATTTTCCTTGCTT+TGG + chr2.2:19814080-19814099 MS.gene039307:CDS 35.0%
! CCATTTGAGAAGGTATGATA+AGG - chr2.2:19815029-19815048 None:intergenic 35.0%
! CTAAGATAAAGCATCAACCA+AGG - chr2.2:19814335-19814354 None:intergenic 35.0%
! TCATGCCTCTAGTTTCATAA+TGG - chr2.2:19814391-19814410 None:intergenic 35.0%
! TGGATGATAATGCTCAAAAG+TGG + chr2.2:19813996-19814015 MS.gene039307:CDS 35.0%
! TTCCATCCGTTGGTATTTTA+TGG + chr2.2:19814567-19814586 MS.gene039307:intron 35.0%
! TTGAGAAGGTATGATAAGGA+GGG - chr2.2:19815025-19815044 None:intergenic 35.0%
! TTTGAGAAGGTATGATAAGG+AGG - chr2.2:19815026-19815045 None:intergenic 35.0%
! TTTTAGATACTCCAAGACCA+TGG + chr2.2:19813967-19813986 MS.gene039307:CDS 35.0%
!!! ATTTTCCTTGCTTTGGAGAA+GGG + chr2.2:19814087-19814106 MS.gene039307:CDS 35.0%
!!! GATCAATTTTTTCCATCCGT+TGG + chr2.2:19814557-19814576 MS.gene039307:intron 35.0%
AAGAAAGGTGAAGGTTGGAT+TGG + chr2.2:19815236-19815255 MS.gene039307:CDS 40.0%
ATAGAGAAGGTAGGCATCAT+AGG - chr2.2:19815087-19815106 None:intergenic 40.0%
ATCCAAAATTGCCATGGTCT+TGG - chr2.2:19813981-19814000 None:intergenic 40.0%
CAACAAAGAAAGGTGAAGGT+TGG + chr2.2:19815231-19815250 MS.gene039307:CDS 40.0%
CAACCTTCACCTTTCTTTGT+TGG - chr2.2:19815233-19815252 None:intergenic 40.0%
CAATTCTACCTCATGGACAT+GGG + chr2.2:19814873-19814892 MS.gene039307:CDS 40.0%
CAGTGAAATGGACATAAACC+CGG + chr2.2:19814959-19814978 MS.gene039307:CDS 40.0%
CCTAAGTATAACTCCTTCCA+AGG - chr2.2:19813933-19813952 None:intergenic 40.0%
CCTTGGAAGGAGTTATACTT+AGG + chr2.2:19813930-19813949 MS.gene039307:CDS 40.0%
CTCCATAAAATACCAACGGA+TGG - chr2.2:19814572-19814591 None:intergenic 40.0%
CTTAGATCAGATGCTACTAC+AGG + chr2.2:19814350-19814369 MS.gene039307:CDS 40.0%
CTTAGCTTCAAAGTCATCCA+TGG - chr2.2:19814618-19814637 None:intergenic 40.0%
CTTGATATCAAGAAAGGAGG+GGG + chr2.2:19814840-19814859 MS.gene039307:CDS 40.0%
GAGGAAGTTTCTATGGTTCA+TGG + chr2.2:19814177-19814196 MS.gene039307:CDS 40.0%
GGAAGTTGTTGGAAGAACAA+TGG + chr2.2:19814894-19814913 MS.gene039307:CDS 40.0%
TACGGGTATCCAACAAAGAA+AGG + chr2.2:19815221-19815240 MS.gene039307:CDS 40.0%
TAGAGAAGGTAGGCATCATA+GGG - chr2.2:19815086-19815105 None:intergenic 40.0%
TCCAAGTACATTGCATTTCC+TGG - chr2.2:19815116-19815135 None:intergenic 40.0%
TCCAGGAAATGCAATGTACT+TGG + chr2.2:19815112-19815131 MS.gene039307:CDS 40.0%
TGCAATGTACTTGGAGAAAC+CGG + chr2.2:19815121-19815140 MS.gene039307:CDS 40.0%
! GATTGGTGATCCAAGAACTT+GGG + chr2.2:19815253-19815272 MS.gene039307:CDS 40.0%
!! AGGAAGTTGGTAATGGAAGT+TGG + chr2.2:19814273-19814292 MS.gene039307:CDS 40.0%
!!! GATTTTCCTTGCTTTGGAGA+AGG + chr2.2:19814086-19814105 MS.gene039307:CDS 40.0%
AAACCGGATGCGGCAAAATT+TGG - chr2.2:19815193-19815212 None:intergenic 45.0%
AACAACTTCCCATGTCCATG+AGG - chr2.2:19814884-19814903 None:intergenic 45.0%
AACAATGGAAAGTCGTGCGA+CGG + chr2.2:19814909-19814928 MS.gene039307:CDS 45.0%
AAGGAGCCAATTCTACCTCA+TGG + chr2.2:19814866-19814885 MS.gene039307:CDS 45.0%
ACATCAAGCTCCCAAGTTCT+TGG - chr2.2:19815266-19815285 None:intergenic 45.0%
AGAACTTGGGAGCTTGATGT+TGG + chr2.2:19815266-19815285 MS.gene039307:CDS 45.0%
AGAGAAGGTAGGCATCATAG+GGG - chr2.2:19815085-19815104 None:intergenic 45.0%
AGATGGTTGGGTTTGCACAA+CGG - chr2.2:19814993-19815012 None:intergenic 45.0%
ATACACCCTTCTCCAAAGCA+AGG - chr2.2:19814095-19814114 None:intergenic 45.0%
CCAATTCTACCTCATGGACA+TGG + chr2.2:19814872-19814891 MS.gene039307:CDS 45.0%
CCATGTCCATGAGGTAGAAT+TGG - chr2.2:19814875-19814894 None:intergenic 45.0%
GATGCTACTACAGGATTCTC+TGG + chr2.2:19814359-19814378 MS.gene039307:CDS 45.0%
TACGGATCAGATGGTATCAC+CGG - chr2.2:19815143-19815162 None:intergenic 45.0%
TCATGGACATGGGAAGTTGT+TGG + chr2.2:19814883-19814902 MS.gene039307:CDS 45.0%
! AAATTTTGCCGCATCCGGTT+TGG + chr2.2:19815192-19815211 MS.gene039307:CDS 45.0%
! AATTTTGCCGCATCCGGTTT+GGG + chr2.2:19815193-19815212 MS.gene039307:CDS 45.0%
! ACTCCAAATTTTGCCGCATC+CGG + chr2.2:19815187-19815206 MS.gene039307:CDS 45.0%
! ATGAGGTAGAATTGGCTCCT+TGG - chr2.2:19814867-19814886 None:intergenic 45.0%
! CTCCAAGACCATGGCAATTT+TGG + chr2.2:19813976-19813995 MS.gene039307:CDS 45.0%
! GGATTGGTGATCCAAGAACT+TGG + chr2.2:19815252-19815271 MS.gene039307:CDS 45.0%
! GGGCATTGTTCAAGATGGTT+GGG - chr2.2:19815005-19815024 None:intergenic 45.0%
! TTACTCTGTGACTTGGGAGA+AGG + chr2.2:19814253-19814272 MS.gene039307:CDS 45.0%
!! AAGGAGGGCATTGTTCAAGA+TGG - chr2.2:19815010-19815029 None:intergenic 45.0%
!! AGGGCATTGTTCAAGATGGT+TGG - chr2.2:19815006-19815025 None:intergenic 45.0%
!! TGGGAGAAGGAAGTTGGTAA+TGG + chr2.2:19814266-19814285 MS.gene039307:CDS 45.0%
!! CATATAAAATAAAATTATAT+AGG + chr2.2:19814782-19814801 MS.gene039307:intron 5.0%
!!! TATAATTTTATTTTATATGA+TGG - chr2.2:19814781-19814800 None:intergenic 5.0%
ACAATGGAAAGTCGTGCGAC+GGG + chr2.2:19814910-19814929 MS.gene039307:CDS 50.0%
CCGAGTTCATCGAACAGAGA+CGG + chr2.2:19815052-19815071 MS.gene039307:CDS 50.0%
CCGTCTCTGTTCGATGAACT+CGG - chr2.2:19815055-19815074 None:intergenic 50.0%
CGTCTCTGTTCGATGAACTC+GGG - chr2.2:19815054-19815073 None:intergenic 50.0%
GCTACTACAGGATTCTCTGG+TGG + chr2.2:19814362-19814381 MS.gene039307:CDS 50.0%
GGGTTGCTATACGGATCAGA+TGG - chr2.2:19815152-19815171 None:intergenic 50.0%
GTAGGCATCATAGGGGAACT+TGG - chr2.2:19815078-19815097 None:intergenic 50.0%
TACCTTCTCTATCGTGCTCC+AGG + chr2.2:19815095-19815114 MS.gene039307:CDS 50.0%
TGGAGCACGATAGAGAAGGT+AGG - chr2.2:19815096-19815115 None:intergenic 50.0%
TTCCTGGAGCACGATAGAGA+AGG - chr2.2:19815100-19815119 None:intergenic 50.0%
TTGCACAACGGTTCAGCTTC+CGG - chr2.2:19814981-19815000 None:intergenic 50.0%
! GTGACTTGGGAGAAGGAAGT+TGG + chr2.2:19814260-19814279 MS.gene039307:CDS 50.0%
! TGGAGTATCTCTTGAGGCTG+CGG - chr2.2:19815173-19815192 None:intergenic 50.0%
!! AACTCGGGTGCCATTTGAGA+AGG - chr2.2:19815039-19815058 None:intergenic 50.0%
!! ATTTTGCCGCATCCGGTTTG+GGG + chr2.2:19815194-19815213 MS.gene039307:CDS 50.0%
CAATGGAAAGTCGTGCGACG+GGG + chr2.2:19814911-19814930 MS.gene039307:CDS 55.0%
TACCCGTACTCACCCCAAAC+CGG - chr2.2:19815209-19815228 None:intergenic 55.0%
TACTCACCCCAAACCGGATG+CGG - chr2.2:19815203-19815222 None:intergenic 55.0%
TCAAGAAAGGAGGGGGTCCA+AGG + chr2.2:19814847-19814866 MS.gene039307:CDS 55.0%
TGCACAACGGTTCAGCTTCC+GGG - chr2.2:19814980-19814999 None:intergenic 55.0%
! GGAGTATCTCTTGAGGCTGC+GGG - chr2.2:19815172-19815191 None:intergenic 55.0%
! TGAGGCTGCGGGTTGCTATA+CGG - chr2.2:19815161-19815180 None:intergenic 55.0%
!! ATCCGGTTTGGGGTGAGTAC+GGG + chr2.2:19815204-19815223 MS.gene039307:CDS 55.0%
!! CATCCGGTTTGGGGTGAGTA+CGG + chr2.2:19815203-19815222 MS.gene039307:CDS 55.0%


Chromosome Type Strat End Strand Name
chr2.2 gene 19813921 19815337 19813921 ID=MS.gene039307
chr2.2 mRNA 19813921 19815337 19813921 ID=MS.gene039307.t1;Parent=MS.gene039307
chr2.2 exon 19813921 19814418 19813921 ID=MS.gene039307.t1.exon1;Parent=MS.gene039307.t1
chr2.2 CDS 19813921 19814418 19813921 ID=cds.MS.gene039307.t1;Parent=MS.gene039307.t1
chr2.2 exon 19814804 19815337 19814804 ID=MS.gene039307.t1.exon2;Parent=MS.gene039307.t1
chr2.2 CDS 19814804 19815337 19814804 ID=cds.MS.gene039307.t1;Parent=MS.gene039307.t1
Gene Sequence

>MS.gene039307

ATGTATGCACCTTGGAAGGAGTTATACTTAGGTAAAAAATGTGAGGTTTTAGATACTCCAAGACCATGGCAATTTTGGATGATAATGCTCAAAAGTGGAAACATGGATACTTTAGCTGCAATTTGTCCAAAAAATGGTTTCAAAGCTGAGCCATTTCCACAACATGATTTTCCTTGCTTTGGAGAAGGGTGTATGAATATGCCATCAATGTACCACAATTATACACAAGTTTATGGTATTGAGAAGAAGATCATGAGAGGAAGTTTCTATGGTTCATGGGATTTGAATGCTACTAATGATGCAAATTTAGGTTATATGAATGATACTTCTTATTACTCTGTGACTTGGGAGAAGGAAGTTGGTAATGGAAGTTGGATTTTTCACCATGTGTTGAAGACTTCTTCTAAATATCCTTGGTTGATGCTTTATCTTAGATCAGATGCTACTACAGGATTCTCTGGTGGTTACCATTATGAAACTAGAGGCATGACAAAAATTGTGAGTTGTTTTTCCTTTCTACTTTTAGTTTATTAGCATTTTTTATTAGTAAATACTGAAATTGGTCGTGAAAATTGTACCAATTTAGACTCTCGTGTTATCGATATTCTAAAATGATCGATAAAATTGTAAAACTATGATCAATTTTTTCCATCCGTTGGTATTTTATGGAGTAGAATGTCGTTAATTGGAAATACCATGGATGACTTTGAAGCTAAGTCAATAATGTCACGGATGCATTTGATAACATATTTAAACAAGAGGGAAGAACTTGATTAACATTTTGCAACATCAAAATATATCAAGGTTCATTTTGAAATAGAATATTTACTATTTTTTTCTTATGCTTATGAAGCCATCCATCATATAAAATAAAATTATATAGGTACCAAAGTCACCACATTTTAAGGTAATGTTCACACTTGATATCAAGAAAGGAGGGGGTCCAAGGAGCCAATTCTACCTCATGGACATGGGAAGTTGTTGGAAGAACAATGGAAAGTCGTGCGACGGGGATGTCACATCTGATGTAACCAGATACAGTGAAATGGACATAAACCCGGAAGCTGAACCGTTGTGCAAACCCAACCATCTTGAACAATGCCCTCCTTATCATACCTTCTCAAATGGCACCCGAGTTCATCGAACAGAGACGGCCAAGTTCCCCTATGATGCCTACCTTCTCTATCGTGCTCCAGGAAATGCAATGTACTTGGAGAAACCGGTGATACCATCTGATCCGTATAGCAACCCGCAGCCTCAAGAGATACTCCAAATTTTGCCGCATCCGGTTTGGGGTGAGTACGGGTATCCAACAAAGAAAGGTGAAGGTTGGATTGGTGATCCAAGAACTTGGGAGCTTGATGTTGGAAGACTCTCTCAATCTCTCTATTTCTATCAGGCAAGTCATGTTCCTTGA
Protein sequence

>MS.gene039307.t1

MYAPWKELYLGKKCEVLDTPRPWQFWMIMLKSGNMDTLAAICPKNGFKAEPFPQHDFPCFGEGCMNMPSMYHNYTQVYGIEKKIMRGSFYGSWDLNATNDANLGYMNDTSYYSVTWEKEVGNGSWIFHHVLKTSSKYPWLMLYLRSDATTGFSGGYHYETRGMTKIVPKSPHFKVMFTLDIKKGGGPRSQFYLMDMGSCWKNNGKSCDGDVTSDVTRYSEMDINPEAEPLCKPNHLEQCPPYHTFSNGTRVHRTETAKFPYDAYLLYRAPGNAMYLEKPVIPSDPYSNPQPQEILQILPHPVWGEYGYPTKKGEGWIGDPRTWELDVGRLSQSLYFYQASHVP