Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene07359.t1 | XP_003591315.1 | 96.8 | 496 | 16 | 0 | 1 | 496 | 1 | 496 | 3.50E-300 | 1040 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene07359.t1 | G7IBR5 | 96.8 | 496 | 16 | 0 | 1 | 496 | 1 | 496 | 2.5e-300 | 1040.0 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049350 | MS.gene07359 | 0.81705 | 4.03E-52 | -1.69E-46 |
| MS.gene049418 | MS.gene07359 | 0.801444 | 8.98E-49 | -1.69E-46 |
| MS.gene049711 | MS.gene07359 | 0.808156 | 3.56E-50 | -1.69E-46 |
| MS.gene049807 | MS.gene07359 | 0.816053 | 6.74E-52 | -1.69E-46 |
| MS.gene049887 | MS.gene07359 | 0.828521 | 8.58E-55 | -1.69E-46 |
| MS.gene050689 | MS.gene07359 | 0.806889 | 6.61E-50 | -1.69E-46 |
| MS.gene050807 | MS.gene07359 | 0.808249 | 3.40E-50 | -1.69E-46 |
| MS.gene050838 | MS.gene07359 | 0.813566 | 2.40E-51 | -1.69E-46 |
| MS.gene050901 | MS.gene07359 | 0.833653 | 4.71E-56 | -1.69E-46 |
| MS.gene051018 | MS.gene07359 | 0.83369 | 4.61E-56 | -1.69E-46 |
| MS.gene05157 | MS.gene07359 | 0.830929 | 2.23E-55 | -1.69E-46 |
| MS.gene051719 | MS.gene07359 | 0.849628 | 2.86E-60 | -1.69E-46 |
| MS.gene051720 | MS.gene07359 | 0.841025 | 6.10E-58 | -1.69E-46 |
| MS.gene051885 | MS.gene07359 | 0.823654 | 1.23E-53 | -1.69E-46 |
| MS.gene052133 | MS.gene07359 | 0.817207 | 3.72E-52 | -1.69E-46 |
| MS.gene052335 | MS.gene07359 | 0.801903 | 7.23E-49 | -1.69E-46 |
| MS.gene052516 | MS.gene07359 | 0.824134 | 9.52E-54 | -1.69E-46 |
| MS.gene052732 | MS.gene07359 | 0.86348 | 2.42E-64 | -1.69E-46 |
| MS.gene053144 | MS.gene07359 | 0.894531 | 2.26E-75 | -1.69E-46 |
| MS.gene053171 | MS.gene07359 | 0.800157 | 1.64E-48 | -1.69E-46 |
| MS.gene053174 | MS.gene07359 | 0.827176 | 1.81E-54 | -1.69E-46 |
| MS.gene053536 | MS.gene07359 | 0.829887 | 4.00E-55 | -1.69E-46 |
| MS.gene053538 | MS.gene07359 | 0.826859 | 2.15E-54 | -1.69E-46 |
| MS.gene053581 | MS.gene07359 | 0.875932 | 2.09E-68 | -1.69E-46 |
| MS.gene054550 | MS.gene07359 | 0.814722 | 1.33E-51 | -1.69E-46 |
| MS.gene054584 | MS.gene07359 | 0.877346 | 6.76E-69 | -1.69E-46 |
| MS.gene055144 | MS.gene07359 | 0.821476 | 3.96E-53 | -1.69E-46 |
| MS.gene055465 | MS.gene07359 | 0.844646 | 6.65E-59 | -1.69E-46 |
| MS.gene055466 | MS.gene07359 | 0.840233 | 9.84E-58 | -1.69E-46 |
| MS.gene055468 | MS.gene07359 | 0.855034 | 8.27E-62 | -1.69E-46 |
| MS.gene055469 | MS.gene07359 | 0.81938 | 1.20E-52 | -1.69E-46 |
| MS.gene055537 | MS.gene07359 | 0.863107 | 3.15E-64 | -1.69E-46 |
| MS.gene055580 | MS.gene07359 | -0.864088 | 1.56E-64 | -1.69E-46 |
| MS.gene055764 | MS.gene07359 | 0.831499 | 1.61E-55 | -1.69E-46 |
| MS.gene055890 | MS.gene07359 | 0.813441 | 2.56E-51 | -1.69E-46 |
| MS.gene055891 | MS.gene07359 | 0.820906 | 5.35E-53 | -1.69E-46 |
| MS.gene056043 | MS.gene07359 | -0.85812 | 1.02E-62 | -1.69E-46 |
| MS.gene056308 | MS.gene07359 | 0.811603 | 6.45E-51 | -1.69E-46 |
| MS.gene056368 | MS.gene07359 | 0.819672 | 1.03E-52 | -1.69E-46 |
| MS.gene056553 | MS.gene07359 | 0.805996 | 1.02E-49 | -1.69E-46 |
| MS.gene058339 | MS.gene07359 | 0.825682 | 4.10E-54 | -1.69E-46 |
| MS.gene058852 | MS.gene07359 | 0.819408 | 1.18E-52 | -1.69E-46 |
| MS.gene058945 | MS.gene07359 | 0.839911 | 1.19E-57 | -1.69E-46 |
| MS.gene05894 | MS.gene07359 | 0.815478 | 9.05E-52 | -1.69E-46 |
| MS.gene059171 | MS.gene07359 | 0.805624 | 1.22E-49 | -1.69E-46 |
| MS.gene059424 | MS.gene07359 | 0.815917 | 7.23E-52 | -1.69E-46 |
| MS.gene059937 | MS.gene07359 | 0.810853 | 9.37E-51 | -1.69E-46 |
| MS.gene060429 | MS.gene07359 | 0.801669 | 8.08E-49 | -1.69E-46 |
| MS.gene060519 | MS.gene07359 | 0.829231 | 5.78E-55 | -1.69E-46 |
| MS.gene060587 | MS.gene07359 | 0.830153 | 3.45E-55 | -1.69E-46 |
| MS.gene060603 | MS.gene07359 | 0.810456 | 1.14E-50 | -1.69E-46 |
| MS.gene060884 | MS.gene07359 | 0.845858 | 3.12E-59 | -1.69E-46 |
| MS.gene060886 | MS.gene07359 | 0.849693 | 2.75E-60 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene07359 | MS.gene87008 | PPI |
| MS.gene96009 | MS.gene07359 | PPI |
| MS.gene07359 | MS.gene000228 | PPI |
| MS.gene039307 | MS.gene07359 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene07359.t1 | MTR_1g086170 | 96.774 | 496 | 16 | 0 | 1 | 496 | 1 | 496 | 0.0 | 1007 |
| MS.gene07359.t1 | MTR_2g072850 | 58.981 | 412 | 160 | 5 | 80 | 485 | 3 | 411 | 8.16e-178 | 506 |
| MS.gene07359.t1 | MTR_2g072880 | 57.576 | 66 | 28 | 0 | 15 | 80 | 19 | 84 | 4.85e-20 | 85.9 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene07359.t1 | AT2G47010 | 65.347 | 505 | 141 | 9 | 3 | 486 | 2 | 493 | 0.0 | 679 |
| MS.gene07359.t1 | AT2G47010 | 65.347 | 505 | 141 | 9 | 3 | 486 | 2 | 493 | 0.0 | 679 |
| MS.gene07359.t1 | AT2G47010 | 65.517 | 464 | 127 | 8 | 3 | 445 | 2 | 453 | 0.0 | 623 |
| MS.gene07359.t1 | AT1G17030 | 57.540 | 504 | 188 | 9 | 1 | 485 | 1 | 497 | 0.0 | 591 |
| MS.gene07359.t1 | AT4G09965 | 62.162 | 74 | 26 | 2 | 417 | 489 | 147 | 219 | 2.84e-26 | 107 |
Find 107 sgRNAs with CRISPR-Local
Find 173 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CACCAAGGCCATGGCAATTT+TGG | 0.120315 | 1.2:+64866541 | MS.gene07359:CDS |
| CTACACCAAGCTGGAGTTTC+TGG | 0.122724 | 1.2:-64867654 | None:intergenic |
| GTTAACCTCACCTTAAAATT+TGG | 0.172698 | 1.2:-64867492 | None:intergenic |
| GTTCAAAAGGAACTGTATTT+AGG | 0.209727 | 1.2:+64866495 | MS.gene07359:CDS |
| CCAGGAAGGTTTCCTTGTTT+TGG | 0.219496 | 1.2:+64866645 | MS.gene07359:CDS |
| AGACCATCTCTTTGCATTCC+TGG | 0.226808 | 1.2:-64866061 | None:intergenic |
| TCTATATTGTTTATGTCTTC+TGG | 0.232699 | 1.2:-64866462 | None:intergenic |
| GGAAACCTTCCTGGTTTAAA+AGG | 0.250546 | 1.2:-64866636 | None:intergenic |
| TCCTCCTTTCTTGACATCTA+AGG | 0.253365 | 1.2:-64867514 | None:intergenic |
| TAATAGTGATAAGCTGAATA+AGG | 0.272753 | 1.2:-64867759 | None:intergenic |
| AGTTATTGCCTCATCCTATT+TGG | 0.288586 | 1.2:+64867868 | MS.gene07359:CDS |
| CTTCTCCTGCGAAAAGAATA+TGG | 0.292504 | 1.2:+64868276 | MS.gene07359:CDS |
| ATTTAATGGTACTTATGATT+TGG | 0.292790 | 1.2:+64866740 | MS.gene07359:CDS |
| TATGTCCTCAAGATGGTAAA+AGG | 0.317835 | 1.2:+64866607 | MS.gene07359:CDS |
| CCAAAACAAGGAAACCTTCC+TGG | 0.324704 | 1.2:-64866645 | None:intergenic |
| CATCCTATTTGGAGTGAGTA+TGG | 0.325483 | 1.2:+64867879 | MS.gene07359:CDS |
| TGGTGTAGCCCTACAGGTTT+AGG | 0.336158 | 1.2:+64867669 | MS.gene07359:CDS |
| TGTGCTTGAGGATTACTATA+AGG | 0.345328 | 1.2:-64867834 | None:intergenic |
| GTAATGAGAGGAGGATTTAA+TGG | 0.352289 | 1.2:+64866726 | MS.gene07359:CDS |
| GACCATCTCTTTGCATTCCT+GGG | 0.357904 | 1.2:-64866060 | None:intergenic |
| GCATTCCCCTTGTGTCATAA+TGG | 0.362536 | 1.2:-64866947 | None:intergenic |
| ATAAGCTGAATAAGGGAAAT+TGG | 0.363013 | 1.2:-64867751 | None:intergenic |
| TTGAGAGCTGATACAGTTAG+TGG | 0.369320 | 1.2:+64866909 | MS.gene07359:CDS |
| AAGTAGACTTTACTTCTATC+AGG | 0.372180 | 1.2:+64867974 | MS.gene07359:CDS |
| TAACCATACTCACTCCAAAT+AGG | 0.374128 | 1.2:-64867882 | None:intergenic |
| TTTGATGACTAATGTTTGTT+AGG | 0.384250 | 1.2:+64868403 | MS.gene07359:CDS |
| TCAAAACATTCAGCTGCTCT+TGG | 0.404310 | 1.2:-64866151 | None:intergenic |
| GGGTTGGTGATGCAAGGACT+TGG | 0.408731 | 1.2:+64867928 | MS.gene07359:CDS |
| GATTCTAGTTGTAGAGATAG+TGG | 0.419018 | 1.2:+64866762 | MS.gene07359:CDS |
| CCAGCTTGGTGTAGCCCTAC+AGG | 0.419351 | 1.2:+64867663 | MS.gene07359:CDS |
| ATCCAAAATTGCCATGGCCT+TGG | 0.420714 | 1.2:-64866543 | None:intergenic |
| TAAGAGTAGCCTTCGAAGCT+TGG | 0.430314 | 1.2:+64866083 | MS.gene07359:CDS |
| ATATGGACATCTATTGATAC+TGG | 0.433471 | 1.2:+64868293 | MS.gene07359:CDS |
| TAAGGATCACAAGTACTAAC+AGG | 0.438806 | 1.2:-64867816 | None:intergenic |
| AACAACTTCCCATGTCTAGA+AGG | 0.439967 | 1.2:-64867557 | None:intergenic |
| GGGAGAAGAAAGTTAATGTT+CGG | 0.445415 | 1.2:+64866826 | MS.gene07359:CDS |
| GGAAATTATGACACTAGGTC+TGG | 0.453514 | 1.2:+64866582 | MS.gene07359:CDS |
| TTCTAGACATGGGAAGTTGT+TGG | 0.455499 | 1.2:+64867559 | MS.gene07359:CDS |
| TGTCCATTGATGACAGAAGA+TGG | 0.460144 | 1.2:-64866688 | None:intergenic |
| AATAGTGATAAGCTGAATAA+GGG | 0.461907 | 1.2:-64867758 | None:intergenic |
| GTCTCCTACAGCTGAGACAT+TGG | 0.469452 | 1.2:-64866038 | None:intergenic |
| AGACTTCAAAGAAATATCCT+TGG | 0.482604 | 1.2:+64866874 | MS.gene07359:CDS |
| GATACAGTTAGTGGATTCTC+TGG | 0.484218 | 1.2:+64866918 | MS.gene07359:CDS |
| AGATCTTTATGCTGTTCAAA+AGG | 0.484340 | 1.2:+64866482 | MS.gene07359:CDS |
| AGAAAGTTAATGTTCGGAGT+TGG | 0.492679 | 1.2:+64866832 | MS.gene07359:CDS |
| TAGAAGGTAGAATTGACTCT+TGG | 0.493404 | 1.2:-64867541 | None:intergenic |
| CAAAACATTCAGCTGCTCTT+GGG | 0.494665 | 1.2:-64866150 | None:intergenic |
| TGAACTATCTCTTGTGCTTG+AGG | 0.503738 | 1.2:-64867846 | None:intergenic |
| AACCCATCTTCTGTCATCAA+TGG | 0.504979 | 1.2:+64866685 | MS.gene07359:CDS |
| ATGGTTGGGTTGGTGATGCA+AGG | 0.505505 | 1.2:+64867922 | MS.gene07359:CDS |
| ATGTCTTCTGGTCTCAGACC+AGG | 0.512031 | 1.2:-64866450 | None:intergenic |
| TATCACTATTACTGTGCTCC+AGG | 0.516398 | 1.2:+64867771 | MS.gene07359:CDS |
| TTAAAATTTGGTGACTCAAG+AGG | 0.526844 | 1.2:-64867480 | None:intergenic |
| TCATCTGGTGTGATATGAAA+TGG | 0.531286 | 1.2:-64867702 | None:intergenic |
| CTGTCATCAATGGACAAAGC+TGG | 0.533115 | 1.2:+64866695 | MS.gene07359:CDS |
| ATGTCCTCAAGATGGTAAAA+GGG | 0.535714 | 1.2:+64866608 | MS.gene07359:CDS |
| CCTGTAGGGCTACACCAAGC+TGG | 0.537936 | 1.2:-64867663 | None:intergenic |
| CAGACCAATGTCTCAGCTGT+AGG | 0.540258 | 1.2:+64866034 | MS.gene07359:CDS |
| ACTTGGGAACTTGATGTTGG+TGG | 0.540896 | 1.2:+64867945 | MS.gene07359:CDS |
| TCTAAATGTTGAGCATTGCC+TGG | 0.545866 | 1.2:-64867789 | None:intergenic |
| GGTTGGTGATGCAAGGACTT+GGG | 0.546921 | 1.2:+64867929 | MS.gene07359:CDS |
| AACAATGGTGCACCTTGTGA+TGG | 0.559983 | 1.2:+64867585 | MS.gene07359:CDS |
| AGAAGTAAAGTCTACTTGCT+AGG | 0.561259 | 1.2:-64867968 | None:intergenic |
| GGACAATTGCCTAAACCTGT+AGG | 0.561583 | 1.2:-64867678 | None:intergenic |
| GTCTCAGCTGTAGGAGACCC+AGG | 0.562074 | 1.2:+64866043 | MS.gene07359:CDS |
| AACCTTCCTGGTTTAAAAGG+AGG | 0.568580 | 1.2:-64866633 | None:intergenic |
| GACAATTGCCTAAACCTGTA+GGG | 0.570433 | 1.2:-64867677 | None:intergenic |
| AAAGTTAACAAACTTGGTGT+AGG | 0.571771 | 1.2:+64866417 | MS.gene07359:CDS |
| GTCCATTGATGACAGAAGAT+GGG | 0.572666 | 1.2:-64866687 | None:intergenic |
| TTAACCTTAGATGTCAAGAA+AGG | 0.573621 | 1.2:+64867510 | MS.gene07359:CDS |
| TGGTCAAGAAGCTCCTCACA+TGG | 0.581869 | 1.2:+64866123 | MS.gene07359:CDS |
| TTAGATGTCAAGAAAGGAGG+AGG | 0.583402 | 1.2:+64867516 | MS.gene07359:CDS |
| ATTGATGACAGAAGATGGGT+TGG | 0.585027 | 1.2:-64866683 | None:intergenic |
| TCAATTCTACCTTCTAGACA+TGG | 0.588399 | 1.2:+64867548 | MS.gene07359:CDS |
| GCTCTTGGGCTACCCATGTG+AGG | 0.591146 | 1.2:-64866136 | None:intergenic |
| AGGACTTGGGAACTTGATGT+TGG | 0.596427 | 1.2:+64867942 | MS.gene07359:CDS |
| GACCCAGGAATGCAAAGAGA+TGG | 0.596905 | 1.2:+64866058 | MS.gene07359:CDS |
| TTAAAGACACACCAAGGCCA+TGG | 0.597630 | 1.2:+64866532 | MS.gene07359:CDS |
| CTGGAAGGTGATGTAATGAG+AGG | 0.599493 | 1.2:+64866714 | MS.gene07359:CDS |
| ATGCATCCTGTTCCAAAACA+AGG | 0.602446 | 1.2:-64866657 | None:intergenic |
| TACTCACTCCAAATAGGATG+AGG | 0.606279 | 1.2:-64867876 | None:intergenic |
| AAAATGGAAATTATGACACT+AGG | 0.613148 | 1.2:+64866577 | MS.gene07359:CDS |
| TCAATCCAGAAACTCCAGCT+TGG | 0.614967 | 1.2:+64867649 | MS.gene07359:CDS |
| GGTGTAGGAGAGTCATTACC+TGG | 0.615130 | 1.2:+64866432 | MS.gene07359:CDS |
| TCTGGTTTATGTCCTCAAGA+TGG | 0.622613 | 1.2:+64866600 | MS.gene07359:CDS |
| CATCAATGGACAAAGCTGGA+AGG | 0.623235 | 1.2:+64866699 | MS.gene07359:CDS |
| ACAGTTAGTGGATTCTCTGG+TGG | 0.623686 | 1.2:+64866921 | MS.gene07359:CDS |
| ATTATCATCCAAAATTGCCA+TGG | 0.624144 | 1.2:-64866549 | None:intergenic |
| ATTTGTTAGCGACAAAGATG+AGG | 0.624187 | 1.2:+64868325 | MS.gene07359:CDS |
| ACCTTAGATGTCAAGAAAGG+AGG | 0.624457 | 1.2:+64867513 | MS.gene07359:CDS |
| GAAGGTGATGTAATGAGAGG+AGG | 0.628897 | 1.2:+64866717 | MS.gene07359:CDS |
| ATGAGTTGTGGACACAAGAG+AGG | 0.634235 | 1.2:-64866008 | None:intergenic |
| TGTTAGCGACAAAGATGAGG+TGG | 0.634773 | 1.2:+64868328 | MS.gene07359:CDS |
| GTGGTTACCATTATGACACA+AGG | 0.639125 | 1.2:+64866940 | MS.gene07359:CDS |
| AGCTGAATAAGGGAAATTGG+CGG | 0.640495 | 1.2:-64867748 | None:intergenic |
| GCCAGGTTCTCTGATTCACA+AGG | 0.645424 | 1.2:+64866386 | MS.gene07359:intron |
| CAATTCTACCTTCTAGACAT+GGG | 0.645465 | 1.2:+64867549 | MS.gene07359:CDS |
| CTCAAGTAAAGCATCAACCA+AGG | 0.657316 | 1.2:-64866891 | None:intergenic |
| TCTGGTGTGATATGAAATGG+TGG | 0.678495 | 1.2:-64867699 | None:intergenic |
| GGTTACCATTATGACACAAG+GGG | 0.678691 | 1.2:+64866942 | MS.gene07359:CDS |
| GGTCAAGAAGCTCCTCACAT+GGG | 0.681692 | 1.2:+64866124 | MS.gene07359:CDS |
| GTTAGTACATCTCCATCACA+AGG | 0.685016 | 1.2:-64867597 | None:intergenic |
| ACAAAGATGAGGTGGCAGAG+TGG | 0.689156 | 1.2:+64868336 | MS.gene07359:CDS |
| TGGTTACCATTATGACACAA+GGG | 0.690726 | 1.2:+64866941 | MS.gene07359:CDS |
| ATTGGTCTGAGAATGAGTTG+TGG | 0.699603 | 1.2:-64866020 | None:intergenic |
| GGAAGTTGTTGGAAGAACAA+TGG | 0.714098 | 1.2:+64867570 | MS.gene07359:CDS |
| GTGAAGTTAAAGACACACCA+AGG | 0.745244 | 1.2:+64866526 | MS.gene07359:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAATGACTGATTATTAATT+TGG | + | chr1.2:64867417-64867436 | MS.gene07359:intron | 15.0% |
| !! | CTCAACTTTAAATAAAATTT+AGG | + | chr1.2:64866278-64866297 | MS.gene07359:intron | 15.0% |
| !!! | CAAATTTGTATTTTATGTTA+TGG | + | chr1.2:64868137-64868156 | MS.gene07359:intron | 15.0% |
| !!! | TAAAAATAGAAGAAATTTTG+AGG | - | chr1.2:64866232-64866251 | None:intergenic | 15.0% |
| !! | AATTAAAATTGAACAGAACA+AGG | - | chr1.2:64867104-64867123 | None:intergenic | 20.0% |
| !! | AGGACTAAAATGAAATATTA+GGG | - | chr1.2:64866212-64866231 | None:intergenic | 20.0% |
| !! | ATTTAATGGTACTTATGATT+TGG | + | chr1.2:64866740-64866759 | MS.gene07359:CDS | 20.0% |
| !!! | ATATCTTTTGTTAGTTAGAT+TGG | - | chr1.2:64867294-64867313 | None:intergenic | 20.0% |
| !!! | GAATTGAAAATTTGAAACAT+AGG | - | chr1.2:64867008-64867027 | None:intergenic | 20.0% |
| !!! | TAACAATCTTTCATTTTATG+AGG | + | chr1.2:64866797-64866816 | MS.gene07359:CDS | 20.0% |
| !!! | TTAGTCATCAAACTATTTTT+TGG | - | chr1.2:64868395-64868414 | None:intergenic | 20.0% |
| !!! | TTCCATTAATGTATTTTGTT+TGG | + | chr1.2:64867123-64867142 | MS.gene07359:intron | 20.0% |
| !!! | TTTGGACTAAACAAAAATTT+TGG | + | chr1.2:64867141-64867160 | MS.gene07359:intron | 20.0% |
| ! | AAAATGGAAATTATGACACT+AGG | + | chr1.2:64866577-64866596 | MS.gene07359:CDS | 25.0% |
| ! | AATAGTGATAAGCTGAATAA+GGG | - | chr1.2:64867761-64867780 | None:intergenic | 25.0% |
| ! | ACAGAAAAAGTTAACAAACT+TGG | + | chr1.2:64866411-64866430 | MS.gene07359:CDS | 25.0% |
| ! | ATAAGTTTCCATTAGTAAAG+TGG | - | chr1.2:64868073-64868092 | None:intergenic | 25.0% |
| ! | GAGGACTAAAATGAAATATT+AGG | - | chr1.2:64866213-64866232 | None:intergenic | 25.0% |
| ! | GATACATTCAGAAATTAAAG+TGG | - | chr1.2:64867190-64867209 | None:intergenic | 25.0% |
| ! | GGCTGAAATTTAAACTAAAA+TGG | - | chr1.2:64867462-64867481 | None:intergenic | 25.0% |
| ! | GTCCAAACAAAATACATTAA+TGG | - | chr1.2:64867128-64867147 | None:intergenic | 25.0% |
| ! | TAATAGTGATAAGCTGAATA+AGG | - | chr1.2:64867762-64867781 | None:intergenic | 25.0% |
| ! | TATGGTTATCCCATTAAAAA+AGG | + | chr1.2:64867897-64867916 | MS.gene07359:CDS | 25.0% |
| ! | TCTATATTGTTTATGTCTTC+TGG | - | chr1.2:64866465-64866484 | None:intergenic | 25.0% |
| ! | TTCAATTACCACTTTACTAA+TGG | + | chr1.2:64868062-64868081 | MS.gene07359:intron | 25.0% |
| ! | TTTATGTTATGGCGAAATTT+AGG | + | chr1.2:64868148-64868167 | MS.gene07359:intron | 25.0% |
| !! | AAACATACATTTTATTGTGC+AGG | + | chr1.2:64868244-64868263 | MS.gene07359:intron | 25.0% |
| !! | ACATGTAGTTTTTGTTACTA+TGG | + | chr1.2:64868197-64868216 | MS.gene07359:intron | 25.0% |
| !! | TGGATGATAATGCTAAAAAA+TGG | + | chr1.2:64866561-64866580 | MS.gene07359:CDS | 25.0% |
| !! | TTTATTTAAAGTTGAGAACC+TGG | - | chr1.2:64866274-64866293 | None:intergenic | 25.0% |
| !!! | TTTTAGTCTTTAAATGTGTG+AGG | - | chr1.2:64867401-64867420 | None:intergenic | 25.0% |
| AAAATTGAACAGAACAAGGA+GGG | - | chr1.2:64867100-64867119 | None:intergenic | 30.0% | |
| AAGTAGACTTTACTTCTATC+AGG | + | chr1.2:64867974-64867993 | MS.gene07359:CDS | 30.0% | |
| AGACTTCAAAGAAATATCCT+TGG | + | chr1.2:64866874-64866893 | MS.gene07359:CDS | 30.0% | |
| AGATCTTTATGCTGTTCAAA+AGG | + | chr1.2:64866482-64866501 | MS.gene07359:CDS | 30.0% | |
| ATAAGCTGAATAAGGGAAAT+TGG | - | chr1.2:64867754-64867773 | None:intergenic | 30.0% | |
| ATAAGTTTCCAAAAGTAGAG+TGG | - | chr1.2:64868015-64868034 | None:intergenic | 30.0% | |
| ATATGGACATCTATTGATAC+TGG | + | chr1.2:64868293-64868312 | MS.gene07359:CDS | 30.0% | |
| ATTATCATCCAAAATTGCCA+TGG | - | chr1.2:64866552-64866571 | None:intergenic | 30.0% | |
| GTTAACCTCACCTTAAAATT+TGG | - | chr1.2:64867495-64867514 | None:intergenic | 30.0% | |
| GTTCAAAAGGAACTGTATTT+AGG | + | chr1.2:64866495-64866514 | MS.gene07359:CDS | 30.0% | |
| TAAAATTGAACAGAACAAGG+AGG | - | chr1.2:64867101-64867120 | None:intergenic | 30.0% | |
| TATCCCATTAAAAAAGGTGA+TGG | + | chr1.2:64867903-64867922 | MS.gene07359:CDS | 30.0% | |
| TTAACCTTAGATGTCAAGAA+AGG | + | chr1.2:64867510-64867529 | MS.gene07359:CDS | 30.0% | |
| ! | CAATCTTTCATTTTATGAGG+TGG | + | chr1.2:64866800-64866819 | MS.gene07359:CDS | 30.0% |
| ! | CATTAAAAAAGGTGATGGTT+GGG | + | chr1.2:64867908-64867927 | MS.gene07359:CDS | 30.0% |
| ! | CTGAATATCTTTTTGTCATC+TGG | - | chr1.2:64867720-64867739 | None:intergenic | 30.0% |
| ! | TCTTGAGTCACCAAATTTTA+AGG | + | chr1.2:64867482-64867501 | MS.gene07359:CDS | 30.0% |
| ! | TGGAATTTTTGCAATGAAGT+TGG | + | chr1.2:64866103-64866122 | MS.gene07359:CDS | 30.0% |
| ! | TTAAAATTTGGTGACTCAAG+AGG | - | chr1.2:64867483-64867502 | None:intergenic | 30.0% |
| ! | TTCAATTACCACTCTACTTT+TGG | + | chr1.2:64868004-64868023 | MS.gene07359:intron | 30.0% |
| ! | TTCATTTTATGAGGTGGTTT+GGG | + | chr1.2:64866806-64866825 | MS.gene07359:CDS | 30.0% |
| ! | TTTCATTTTATGAGGTGGTT+TGG | + | chr1.2:64866805-64866824 | MS.gene07359:CDS | 30.0% |
| ! | TTTGAAACATAGGATTCTGA+AGG | - | chr1.2:64866998-64867017 | None:intergenic | 30.0% |
| !! | AAAGTTAACAAACTTGGTGT+AGG | + | chr1.2:64866417-64866436 | MS.gene07359:CDS | 30.0% |
| !!! | CAACCATCACCTTTTTTAAT+GGG | - | chr1.2:64867909-64867928 | None:intergenic | 30.0% |
| !!! | GAATGTTTTGATCTTTCACA+AGG | + | chr1.2:64866163-64866182 | MS.gene07359:CDS | 30.0% |
| !!! | TTTTTTGTTGTTGTATGACC+AGG | + | chr1.2:64866253-64866272 | MS.gene07359:intron | 30.0% |
| AGAAAGTTAATGTTCGGAGT+TGG | + | chr1.2:64866832-64866851 | MS.gene07359:CDS | 35.0% | |
| AGAAGTAAAGTCTACTTGCT+AGG | - | chr1.2:64867971-64867990 | None:intergenic | 35.0% | |
| AGTTATTGCCTCATCCTATT+TGG | + | chr1.2:64867868-64867887 | MS.gene07359:CDS | 35.0% | |
| ATGTCCTCAAGATGGTAAAA+GGG | + | chr1.2:64866608-64866627 | MS.gene07359:CDS | 35.0% | |
| CAATTCTACCTTCTAGACAT+GGG | + | chr1.2:64867549-64867568 | MS.gene07359:CDS | 35.0% | |
| GGGAGAAGAAAGTTAATGTT+CGG | + | chr1.2:64866826-64866845 | MS.gene07359:CDS | 35.0% | |
| GTAATGAGAGGAGGATTTAA+TGG | + | chr1.2:64866726-64866745 | MS.gene07359:CDS | 35.0% | |
| TAACCATACTCACTCCAAAT+AGG | - | chr1.2:64867885-64867904 | None:intergenic | 35.0% | |
| TAAGGATCACAAGTACTAAC+AGG | - | chr1.2:64867819-64867838 | None:intergenic | 35.0% | |
| TATGTCCTCAAGATGGTAAA+AGG | + | chr1.2:64866607-64866626 | MS.gene07359:CDS | 35.0% | |
| TCAATTCTACCTTCTAGACA+TGG | + | chr1.2:64867548-64867567 | MS.gene07359:CDS | 35.0% | |
| TCATCTGGTGTGATATGAAA+TGG | - | chr1.2:64867705-64867724 | None:intergenic | 35.0% | |
| TGGTTACCATTATGACACAA+GGG | + | chr1.2:64866941-64866960 | MS.gene07359:CDS | 35.0% | |
| TGTGCTTGAGGATTACTATA+AGG | - | chr1.2:64867837-64867856 | None:intergenic | 35.0% | |
| ! | ACATAGGATTCTGAAGGAAA+TGG | - | chr1.2:64866992-64867011 | None:intergenic | 35.0% |
| ! | ACATTTTATTGTGCAGGATC+CGG | + | chr1.2:64868250-64868269 | MS.gene07359:intron | 35.0% |
| ! | ATTTGTTAGCGACAAAGATG+AGG | + | chr1.2:64868325-64868344 | MS.gene07359:CDS | 35.0% |
| ! | CCATTAAAAAAGGTGATGGT+TGG | + | chr1.2:64867907-64867926 | MS.gene07359:CDS | 35.0% |
| ! | GATTCTAGTTGTAGAGATAG+TGG | + | chr1.2:64866762-64866781 | MS.gene07359:CDS | 35.0% |
| ! | TAGAAGGTAGAATTGACTCT+TGG | - | chr1.2:64867544-64867563 | None:intergenic | 35.0% |
| !!! | AGTCACCAAATTTTAAGGTG+AGG | + | chr1.2:64867487-64867506 | MS.gene07359:CDS | 35.0% |
| !!! | CCAACCATCACCTTTTTTAA+TGG | - | chr1.2:64867910-64867929 | None:intergenic | 35.0% |
| AACAACTTCCCATGTCTAGA+AGG | - | chr1.2:64867560-64867579 | None:intergenic | 40.0% | |
| AACCCATCTTCTGTCATCAA+TGG | + | chr1.2:64866685-64866704 | MS.gene07359:CDS | 40.0% | |
| AACCTTCCTGGTTTAAAAGG+AGG | - | chr1.2:64866636-64866655 | None:intergenic | 40.0% | |
| ACAACGGTTCAAAATCACCT+CGG | - | chr1.2:64866360-64866379 | None:intergenic | 40.0% | |
| ACCTTAGATGTCAAGAAAGG+AGG | + | chr1.2:64867513-64867532 | MS.gene07359:CDS | 40.0% | |
| AGAACCTGGCAATACAACAA+CGG | - | chr1.2:64866376-64866395 | None:intergenic | 40.0% | |
| AGCTGAATAAGGGAAATTGG+CGG | - | chr1.2:64867751-64867770 | None:intergenic | 40.0% | |
| ATGCATCCTGTTCCAAAACA+AGG | - | chr1.2:64866660-64866679 | None:intergenic | 40.0% | |
| ATGGCGAAATTTAGGTGACA+CGG | + | chr1.2:64868156-64868175 | MS.gene07359:intron | 40.0% | |
| CAAAACATTCAGCTGCTCTT+GGG | - | chr1.2:64866153-64866172 | None:intergenic | 40.0% | |
| CTTCTCCTGCGAAAAGAATA+TGG | + | chr1.2:64868276-64868295 | MS.gene07359:CDS | 40.0% | |
| GACAATTGCCTAAACCTGTA+GGG | - | chr1.2:64867680-64867699 | None:intergenic | 40.0% | |
| GCAAAAATTCCAAGCTTCGA+AGG | - | chr1.2:64866095-64866114 | None:intergenic | 40.0% | |
| GGAAACCTTCCTGGTTTAAA+AGG | - | chr1.2:64866639-64866658 | None:intergenic | 40.0% | |
| GGAAATTATGACACTAGGTC+TGG | + | chr1.2:64866582-64866601 | MS.gene07359:CDS | 40.0% | |
| GGAAGTTGTTGGAAGAACAA+TGG | + | chr1.2:64867570-64867589 | MS.gene07359:CDS | 40.0% | |
| GGCAAACACATCACACATTT+AGG | - | chr1.2:64867169-64867188 | None:intergenic | 40.0% | |
| GGTTACCATTATGACACAAG+GGG | + | chr1.2:64866942-64866961 | MS.gene07359:CDS | 40.0% | |
| GTGAAGTTAAAGACACACCA+AGG | + | chr1.2:64866526-64866545 | MS.gene07359:CDS | 40.0% | |
| GTGGTTACCATTATGACACA+AGG | + | chr1.2:64866940-64866959 | MS.gene07359:CDS | 40.0% | |
| GTGTCTCTTGTTAGTCACTT+TGG | - | chr1.2:64867326-64867345 | None:intergenic | 40.0% | |
| GTTAGTACATCTCCATCACA+AGG | - | chr1.2:64867600-64867619 | None:intergenic | 40.0% | |
| TACTCACTCCAAATAGGATG+AGG | - | chr1.2:64867879-64867898 | None:intergenic | 40.0% | |
| TATCACTATTACTGTGCTCC+AGG | + | chr1.2:64867771-64867790 | MS.gene07359:CDS | 40.0% | |
| TCAAAACATTCAGCTGCTCT+TGG | - | chr1.2:64866154-64866173 | None:intergenic | 40.0% | |
| TCCTCCTTTCTTGACATCTA+AGG | - | chr1.2:64867517-64867536 | None:intergenic | 40.0% | |
| TCTGGTGTGATATGAAATGG+TGG | - | chr1.2:64867702-64867721 | None:intergenic | 40.0% | |
| TGAACTATCTCTTGTGCTTG+AGG | - | chr1.2:64867849-64867868 | None:intergenic | 40.0% | |
| TTAGATGTCAAGAAAGGAGG+AGG | + | chr1.2:64867516-64867535 | MS.gene07359:CDS | 40.0% | |
| TTCTAGACATGGGAAGTTGT+TGG | + | chr1.2:64867559-64867578 | MS.gene07359:CDS | 40.0% | |
| TTGAGAGCTGATACAGTTAG+TGG | + | chr1.2:64866909-64866928 | MS.gene07359:CDS | 40.0% | |
| ! | AAAAAAGGTGATGGTTGGGT+TGG | + | chr1.2:64867912-64867931 | MS.gene07359:CDS | 40.0% |
| ! | ATTGATGACAGAAGATGGGT+TGG | - | chr1.2:64866686-64866705 | None:intergenic | 40.0% |
| ! | ATTGGTCTGAGAATGAGTTG+TGG | - | chr1.2:64866023-64866042 | None:intergenic | 40.0% |
| ! | CACACTTCGAAATGTTTCTG+TGG | - | chr1.2:64867217-64867236 | None:intergenic | 40.0% |
| ! | CATCCTATTTGGAGTGAGTA+TGG | + | chr1.2:64867879-64867898 | MS.gene07359:CDS | 40.0% |
| ! | CATTTTATTGTGCAGGATCC+GGG | + | chr1.2:64868251-64868270 | MS.gene07359:intron | 40.0% |
| ! | CTCAAGTAAAGCATCAACCA+AGG | - | chr1.2:64866894-64866913 | None:intergenic | 40.0% |
| ! | GATGTCCATATTCTTTTCGC+AGG | - | chr1.2:64868284-64868303 | None:intergenic | 40.0% |
| ! | GTCCATTGATGACAGAAGAT+GGG | - | chr1.2:64866690-64866709 | None:intergenic | 40.0% |
| ! | TACCTCCTTTTAAACCAGGA+AGG | + | chr1.2:64866631-64866650 | MS.gene07359:CDS | 40.0% |
| ! | TCATTTTACAACTGTCTCCG+AGG | + | chr1.2:64866340-64866359 | MS.gene07359:intron | 40.0% |
| ! | TCTAAATGTTGAGCATTGCC+TGG | - | chr1.2:64867792-64867811 | None:intergenic | 40.0% |
| ! | TCTGGTTTATGTCCTCAAGA+TGG | + | chr1.2:64866600-64866619 | MS.gene07359:CDS | 40.0% |
| ! | TGTCCATTGATGACAGAAGA+TGG | - | chr1.2:64866691-64866710 | None:intergenic | 40.0% |
| !! | GATACAGTTAGTGGATTCTC+TGG | + | chr1.2:64866918-64866937 | MS.gene07359:CDS | 40.0% |
| !!! | AGGTTTCCTTGTTTTGGAAC+AGG | + | chr1.2:64866651-64866670 | MS.gene07359:CDS | 40.0% |
| AACAATGGTGCACCTTGTGA+TGG | + | chr1.2:64867585-64867604 | MS.gene07359:CDS | 45.0% | |
| ACCTTGTGAATCAGAGAACC+TGG | - | chr1.2:64866390-64866409 | None:intergenic | 45.0% | |
| ACTTGGGAACTTGATGTTGG+TGG | + | chr1.2:64867945-64867964 | MS.gene07359:CDS | 45.0% | |
| AGACCATCTCTTTGCATTCC+TGG | - | chr1.2:64866064-64866083 | None:intergenic | 45.0% | |
| AGGACTTGGGAACTTGATGT+TGG | + | chr1.2:64867942-64867961 | MS.gene07359:CDS | 45.0% | |
| ATCCAAAATTGCCATGGCCT+TGG | - | chr1.2:64866546-64866565 | None:intergenic | 45.0% | |
| ATGAGTTGTGGACACAAGAG+AGG | - | chr1.2:64866011-64866030 | None:intergenic | 45.0% | |
| CATCAATGGACAAAGCTGGA+AGG | + | chr1.2:64866699-64866718 | MS.gene07359:CDS | 45.0% | |
| CCAAAACAAGGAAACCTTCC+TGG | - | chr1.2:64866648-64866667 | None:intergenic | 45.0% | |
| CTGGAAGGTGATGTAATGAG+AGG | + | chr1.2:64866714-64866733 | MS.gene07359:CDS | 45.0% | |
| CTGTCATCAATGGACAAAGC+TGG | + | chr1.2:64866695-64866714 | MS.gene07359:CDS | 45.0% | |
| GAAGGTGATGTAATGAGAGG+AGG | + | chr1.2:64866717-64866736 | MS.gene07359:CDS | 45.0% | |
| GACCATCTCTTTGCATTCCT+GGG | - | chr1.2:64866063-64866082 | None:intergenic | 45.0% | |
| GCATTCCCCTTGTGTCATAA+TGG | - | chr1.2:64866950-64866969 | None:intergenic | 45.0% | |
| GGACAATTGCCTAAACCTGT+AGG | - | chr1.2:64867681-64867700 | None:intergenic | 45.0% | |
| TAAGAGTAGCCTTCGAAGCT+TGG | + | chr1.2:64866083-64866102 | MS.gene07359:CDS | 45.0% | |
| TCAATCCAGAAACTCCAGCT+TGG | + | chr1.2:64867649-64867668 | MS.gene07359:CDS | 45.0% | |
| TGAACCGTTGTTGTATTGCC+AGG | + | chr1.2:64866369-64866388 | MS.gene07359:intron | 45.0% | |
| TGGCGAAATTTAGGTGACAC+GGG | + | chr1.2:64868157-64868176 | MS.gene07359:intron | 45.0% | |
| TGTTAGCGACAAAGATGAGG+TGG | + | chr1.2:64868328-64868347 | MS.gene07359:CDS | 45.0% | |
| TTAAAGACACACCAAGGCCA+TGG | + | chr1.2:64866532-64866551 | MS.gene07359:CDS | 45.0% | |
| ! | GGTACCCTTTTACCATCTTG+AGG | - | chr1.2:64866615-64866634 | None:intergenic | 45.0% |
| !! | ACAGTTAGTGGATTCTCTGG+TGG | + | chr1.2:64866921-64866940 | MS.gene07359:CDS | 45.0% |
| !! | AGGGTACCTCCTTTTAAACC+AGG | + | chr1.2:64866627-64866646 | MS.gene07359:CDS | 45.0% |
| !! | CCAGGAAGGTTTCCTTGTTT+TGG | + | chr1.2:64866645-64866664 | MS.gene07359:CDS | 45.0% |
| ACAAAGATGAGGTGGCAGAG+TGG | + | chr1.2:64868336-64868355 | MS.gene07359:CDS | 50.0% | |
| ATGTCTTCTGGTCTCAGACC+AGG | - | chr1.2:64866453-64866472 | None:intergenic | 50.0% | |
| CAGACCAATGTCTCAGCTGT+AGG | + | chr1.2:64866034-64866053 | MS.gene07359:CDS | 50.0% | |
| CTACACCAAGCTGGAGTTTC+TGG | - | chr1.2:64867657-64867676 | None:intergenic | 50.0% | |
| GACCCAGGAATGCAAAGAGA+TGG | + | chr1.2:64866058-64866077 | MS.gene07359:CDS | 50.0% | |
| GCCAGGTTCTCTGATTCACA+AGG | + | chr1.2:64866386-64866405 | MS.gene07359:intron | 50.0% | |
| GGCGAAATTTAGGTGACACG+GGG | + | chr1.2:64868158-64868177 | MS.gene07359:intron | 50.0% | |
| GGTCAAGAAGCTCCTCACAT+GGG | + | chr1.2:64866124-64866143 | MS.gene07359:CDS | 50.0% | |
| GGTGTAGGAGAGTCATTACC+TGG | + | chr1.2:64866432-64866451 | MS.gene07359:CDS | 50.0% | |
| GTCTCCTACAGCTGAGACAT+TGG | - | chr1.2:64866041-64866060 | None:intergenic | 50.0% | |
| TGGTCAAGAAGCTCCTCACA+TGG | + | chr1.2:64866123-64866142 | MS.gene07359:CDS | 50.0% | |
| TGGTGTAGCCCTACAGGTTT+AGG | + | chr1.2:64867669-64867688 | MS.gene07359:CDS | 50.0% | |
| ! | CACCAAGGCCATGGCAATTT+TGG | + | chr1.2:64866541-64866560 | MS.gene07359:CDS | 50.0% |
| ! | CTTTTCGCAGGAGAAGTTCC+CGG | - | chr1.2:64868272-64868291 | None:intergenic | 50.0% |
| !! | ATGGTTGGGTTGGTGATGCA+AGG | + | chr1.2:64867922-64867941 | MS.gene07359:CDS | 50.0% |
| !! | GGTTGGTGATGCAAGGACTT+GGG | + | chr1.2:64867929-64867948 | MS.gene07359:CDS | 50.0% |
| !! | GGGTTGGTGATGCAAGGACT+TGG | + | chr1.2:64867928-64867947 | MS.gene07359:CDS | 55.0% |
| CCTGTAGGGCTACACCAAGC+TGG | - | chr1.2:64867666-64867685 | None:intergenic | 60.0% | |
| GCTCTTGGGCTACCCATGTG+AGG | - | chr1.2:64866139-64866158 | None:intergenic | 60.0% | |
| GTCTCAGCTGTAGGAGACCC+AGG | + | chr1.2:64866043-64866062 | MS.gene07359:CDS | 60.0% | |
| !! | CCAGCTTGGTGTAGCCCTAC+AGG | + | chr1.2:64867663-64867682 | MS.gene07359:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.2 | gene | 64865953 | 64868424 | 64865953 | ID=MS.gene07359 |
| chr1.2 | mRNA | 64865953 | 64868424 | 64865953 | ID=MS.gene07359.t1;Parent=MS.gene07359 |
| chr1.2 | exon | 64865953 | 64866184 | 64865953 | ID=MS.gene07359.t1.exon1;Parent=MS.gene07359.t1 |
| chr1.2 | CDS | 64865953 | 64866184 | 64865953 | ID=cds.MS.gene07359.t1;Parent=MS.gene07359.t1 |
| chr1.2 | exon | 64866391 | 64866977 | 64866391 | ID=MS.gene07359.t1.exon2;Parent=MS.gene07359.t1 |
| chr1.2 | CDS | 64866391 | 64866977 | 64866391 | ID=cds.MS.gene07359.t1;Parent=MS.gene07359.t1 |
| chr1.2 | exon | 64867480 | 64867995 | 64867480 | ID=MS.gene07359.t1.exon3;Parent=MS.gene07359.t1 |
| chr1.2 | CDS | 64867480 | 64867995 | 64867480 | ID=cds.MS.gene07359.t1;Parent=MS.gene07359.t1 |
| chr1.2 | exon | 64868266 | 64868424 | 64868266 | ID=MS.gene07359.t1.exon4;Parent=MS.gene07359.t1 |
| chr1.2 | CDS | 64868266 | 64868424 | 64868266 | ID=cds.MS.gene07359.t1;Parent=MS.gene07359.t1 |
| Gene Sequence |
| Protein sequence |
