Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene005469.t1 | XP_003591315.1 | 96.8 | 473 | 15 | 0 | 1 | 473 | 1 | 473 | 5.10E-288 | 999.6 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene005469.t1 | G7IBR5 | 96.8 | 473 | 15 | 0 | 1 | 473 | 1 | 473 | 3.7e-288 | 999.6 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene005469 | MS.gene96009 | PPI |
| MS.gene005469 | MS.gene87008 | PPI |
| MS.gene005469 | MS.gene000228 | PPI |
| MS.gene005469 | MS.gene039307 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene005469.t1 | MTR_1g086170 | 96.025 | 478 | 19 | 0 | 1 | 478 | 1 | 478 | 0.0 | 962 |
| MS.gene005469.t1 | MTR_2g072850 | 60.253 | 395 | 149 | 4 | 80 | 468 | 3 | 395 | 2.25e-174 | 496 |
| MS.gene005469.t1 | MTR_2g072880 | 57.576 | 66 | 28 | 0 | 15 | 80 | 19 | 84 | 4.63e-20 | 85.9 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene005469.t1 | AT2G47010 | 66.531 | 493 | 132 | 8 | 3 | 474 | 2 | 482 | 0.0 | 672 |
| MS.gene005469.t1 | AT2G47010 | 66.531 | 493 | 132 | 8 | 3 | 474 | 2 | 482 | 0.0 | 672 |
| MS.gene005469.t1 | AT2G47010 | 66.810 | 464 | 121 | 8 | 3 | 445 | 2 | 453 | 0.0 | 634 |
| MS.gene005469.t1 | AT1G17030 | 57.606 | 493 | 184 | 8 | 1 | 474 | 1 | 487 | 0.0 | 572 |
| MS.gene005469.t1 | AT4G09965 | 63.158 | 57 | 19 | 2 | 417 | 472 | 147 | 202 | 6.87e-18 | 83.2 |
Find 111 sgRNAs with CRISPR-Local
Find 176 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CACCAAGGCCATGGCAATTT+TGG | 0.120315 | 1.1:+64047221 | MS.gene005469:CDS |
| CTACACCAAGCTGGAGTTTC+TGG | 0.122724 | 1.1:-64048321 | None:intergenic |
| GTTAATCTCACCTTAAAATT+TGG | 0.167975 | 1.1:-64048159 | None:intergenic |
| AGTTATTGCCTCATCCTATT+TGG | 0.205690 | 1.1:+64048535 | MS.gene005469:CDS |
| GTTCAAAAGGAACTGTATTT+AGG | 0.209727 | 1.1:+64047175 | MS.gene005469:CDS |
| CCAGGAAGGTTTCCTTGTTT+TGG | 0.219496 | 1.1:+64047325 | MS.gene005469:CDS |
| TCTATGTTGTTTATGTCTTC+TGG | 0.226246 | 1.1:-64047142 | None:intergenic |
| AGACCATCTCTTTGCATTCC+TGG | 0.226808 | 1.1:-64046741 | None:intergenic |
| GGAAACCTTCCTGGTTTAAA+TGG | 0.235275 | 1.1:-64047316 | None:intergenic |
| GTTATTGCCTCATCCTATTT+GGG | 0.237651 | 1.1:+64048536 | MS.gene005469:CDS |
| TAAAGAGTAAACTAAACTTT+TGG | 0.238617 | 1.1:+64049120 | MS.gene005469:CDS |
| TCCTCCTTTCTTGACATCTA+AGG | 0.253365 | 1.1:-64048181 | None:intergenic |
| ATTTAATGGTACTTATGATT+TGG | 0.260407 | 1.1:+64047420 | MS.gene005469:CDS |
| TAATAGTGATAAGCTGAATA+AGG | 0.272753 | 1.1:-64048426 | None:intergenic |
| CTTCTCCTGCGAAAAGAATA+TGG | 0.292504 | 1.1:+64048943 | MS.gene005469:CDS |
| CATCCTATTTGGGGTGAGTA+TGG | 0.309343 | 1.1:+64048546 | MS.gene005469:CDS |
| TTTAATGGTACTTATGATTT+GGG | 0.320310 | 1.1:+64047421 | MS.gene005469:CDS |
| CCAAAACAAGGAAACCTTCC+TGG | 0.324704 | 1.1:-64047325 | None:intergenic |
| TGGTGTAGCCCTACAGGTTT+AGG | 0.336158 | 1.1:+64048336 | MS.gene005469:CDS |
| TGTGCTTGAGGATTACTATA+AGG | 0.345328 | 1.1:-64048501 | None:intergenic |
| GTAATGAGAGGAGGATTTAA+TGG | 0.352289 | 1.1:+64047406 | MS.gene005469:CDS |
| GACCATCTCTTTGCATTCCT+GGG | 0.357904 | 1.1:-64046740 | None:intergenic |
| GCATTCCCCTTGTGTCATAA+TGG | 0.362536 | 1.1:-64047627 | None:intergenic |
| ATAAGCTGAATAAGGGAAAT+TGG | 0.363013 | 1.1:-64048418 | None:intergenic |
| TAACCATACTCACCCCAAAT+AGG | 0.368213 | 1.1:-64048549 | None:intergenic |
| TTGAGAGCTGATACAGTTAG+TGG | 0.369320 | 1.1:+64047589 | MS.gene005469:CDS |
| AAGTAGACTTTACTTCTATC+AGG | 0.372180 | 1.1:+64048641 | MS.gene005469:CDS |
| ATGTCCTCAAGATGGTAAAA+AGG | 0.375641 | 1.1:+64047288 | MS.gene005469:CDS |
| TAGGTGGAAAGAAAGAAAAT+AGG | 0.392387 | 1.1:+64049089 | MS.gene005469:intron |
| TCAAAACATTCAGCTGCTCT+TGG | 0.404310 | 1.1:-64046831 | None:intergenic |
| GGGTTGGTGATGCAAGGACT+TGG | 0.408731 | 1.1:+64048595 | MS.gene005469:CDS |
| GGTTCTAGTTGTAGAGATAG+TGG | 0.409441 | 1.1:+64047442 | MS.gene005469:CDS |
| GGGAGAAGAAAGTTGGTGTT+GGG | 0.418678 | 1.1:+64047506 | MS.gene005469:CDS |
| CCAGCTTGGTGTAGCCCTAC+AGG | 0.419351 | 1.1:+64048330 | MS.gene005469:CDS |
| ATCCAAAATTGCCATGGCCT+TGG | 0.420714 | 1.1:-64047223 | None:intergenic |
| TAAGAGTAGCCTTCGAAGCT+TGG | 0.430314 | 1.1:+64046763 | MS.gene005469:CDS |
| ATATGGACATCTATTGATAC+TGG | 0.433471 | 1.1:+64048960 | MS.gene005469:CDS |
| TAAGGATCACAAGTACTAAC+AGG | 0.438806 | 1.1:-64048483 | None:intergenic |
| AACAACTTCCCATGTCTAGA+AGG | 0.439967 | 1.1:-64048224 | None:intergenic |
| TTCTAGACATGGGAAGTTGT+TGG | 0.455499 | 1.1:+64048226 | MS.gene005469:CDS |
| AATAGTGATAAGCTGAATAA+GGG | 0.461907 | 1.1:-64048425 | None:intergenic |
| GTCTCCTACAGCTGAGACAT+TGG | 0.469452 | 1.1:-64046718 | None:intergenic |
| AGAAAGTTGGTGTTGGGAGC+TGG | 0.470543 | 1.1:+64047512 | MS.gene005469:CDS |
| AGACTTCAAAGAAATATCCT+TGG | 0.482604 | 1.1:+64047554 | MS.gene005469:CDS |
| AGATCTTTATGCTGTTCAAA+AGG | 0.483494 | 1.1:+64047162 | MS.gene005469:CDS |
| GATACAGTTAGTGGATTCTC+TGG | 0.484218 | 1.1:+64047598 | MS.gene005469:CDS |
| TAGAAGGTAGAATTGACTCT+TGG | 0.493404 | 1.1:-64048208 | None:intergenic |
| CAAAACATTCAGCTGCTCTT+GGG | 0.494665 | 1.1:-64046830 | None:intergenic |
| TGAACTATCTCTTGTGCTTG+AGG | 0.503738 | 1.1:-64048513 | None:intergenic |
| ATGGTTGGGTTGGTGATGCA+AGG | 0.505505 | 1.1:+64048589 | MS.gene005469:CDS |
| AACCCATCTTGTGTCATCAA+TGG | 0.507462 | 1.1:+64047365 | MS.gene005469:CDS |
| TGGGAGAAGAAAGTTGGTGT+TGG | 0.512018 | 1.1:+64047505 | MS.gene005469:CDS |
| ATGTCTTCTGGTCTCAGACC+AGG | 0.512031 | 1.1:-64047130 | None:intergenic |
| TTATTGCCTCATCCTATTTG+GGG | 0.515055 | 1.1:+64048537 | MS.gene005469:CDS |
| TATCACTATTACTGTGCTCC+AGG | 0.516398 | 1.1:+64048438 | MS.gene005469:CDS |
| TGTCCATTGATGACACAAGA+TGG | 0.520981 | 1.1:-64047368 | None:intergenic |
| GTTGTTTGGGAGAAGAAAGT+TGG | 0.521303 | 1.1:+64047499 | MS.gene005469:CDS |
| TTAAAATTTGGTGACTCAAG+AGG | 0.526844 | 1.1:-64048147 | None:intergenic |
| TCATCTGGTGTGATATGAAA+TGG | 0.531286 | 1.1:-64048369 | None:intergenic |
| GGTAACTATGACACTAGGTC+TGG | 0.535787 | 1.1:+64047262 | MS.gene005469:CDS |
| CCTGTAGGGCTACACCAAGC+TGG | 0.537936 | 1.1:-64048330 | None:intergenic |
| CAGACCAATGTCTCAGCTGT+AGG | 0.540258 | 1.1:+64046714 | MS.gene005469:CDS |
| ACTTGGGAACTTGATGTTGG+TGG | 0.540896 | 1.1:+64048612 | MS.gene005469:CDS |
| TCTAAATGTTGAGCATTGCC+TGG | 0.545866 | 1.1:-64048456 | None:intergenic |
| GGTTGGTGATGCAAGGACTT+GGG | 0.546921 | 1.1:+64048596 | MS.gene005469:CDS |
| GTGTCATCAATGGACAAAGC+TGG | 0.559679 | 1.1:+64047375 | MS.gene005469:CDS |
| AACAATGGTGCACCTTGTGA+TGG | 0.559983 | 1.1:+64048252 | MS.gene005469:CDS |
| AGAAGTAAAGTCTACTTGCT+AGG | 0.561259 | 1.1:-64048635 | None:intergenic |
| GGACAATTGCCTAAACCTGT+AGG | 0.561583 | 1.1:-64048345 | None:intergenic |
| GTCTCAGCTGTAGGAGACCC+AGG | 0.562074 | 1.1:+64046723 | MS.gene005469:CDS |
| TACCTCCATTTAAACCAGGA+AGG | 0.570286 | 1.1:+64047311 | MS.gene005469:CDS |
| GACAATTGCCTAAACCTGTA+GGG | 0.570433 | 1.1:-64048344 | None:intergenic |
| AAAGTTAACAAACTTGGTGT+AGG | 0.571771 | 1.1:+64047097 | MS.gene005469:CDS |
| CTGGAAGATGATGTAATGAG+AGG | 0.572470 | 1.1:+64047394 | MS.gene005469:CDS |
| TTAACCTTAGATGTCAAGAA+AGG | 0.573621 | 1.1:+64048177 | MS.gene005469:CDS |
| AACCTTCCTGGTTTAAATGG+AGG | 0.575400 | 1.1:-64047313 | None:intergenic |
| ATTGATGACACAAGATGGGT+TGG | 0.579548 | 1.1:-64047363 | None:intergenic |
| TGGTCAAGAAGCTCCTCACA+TGG | 0.581869 | 1.1:+64046803 | MS.gene005469:CDS |
| TTAGATGTCAAGAAAGGAGG+AGG | 0.583402 | 1.1:+64048183 | MS.gene005469:CDS |
| GTCCATTGATGACACAAGAT+GGG | 0.584382 | 1.1:-64047367 | None:intergenic |
| GAAGATGATGTAATGAGAGG+AGG | 0.586034 | 1.1:+64047397 | MS.gene005469:CDS |
| TCAATTCTACCTTCTAGACA+TGG | 0.588399 | 1.1:+64048215 | MS.gene005469:CDS |
| GCTCTTGGGCTACCCATGTG+AGG | 0.591146 | 1.1:-64046816 | None:intergenic |
| AGGACTTGGGAACTTGATGT+TGG | 0.596427 | 1.1:+64048609 | MS.gene005469:CDS |
| GACCCAGGAATGCAAAGAGA+TGG | 0.596905 | 1.1:+64046738 | MS.gene005469:CDS |
| TTAAAGACACACCAAGGCCA+TGG | 0.597630 | 1.1:+64047212 | MS.gene005469:CDS |
| ATGCATCCTGTTCCAAAACA+AGG | 0.602446 | 1.1:-64047337 | None:intergenic |
| TACTCACCCCAAATAGGATG+AGG | 0.607321 | 1.1:-64048543 | None:intergenic |
| TCAATCCAGAAACTCCAGCT+TGG | 0.614056 | 1.1:+64048316 | MS.gene005469:CDS |
| GGTGTAGGAGAGTCATTACC+TGG | 0.615130 | 1.1:+64047112 | MS.gene005469:CDS |
| ATTATCATCCAAAATTGCCA+TGG | 0.621479 | 1.1:-64047229 | None:intergenic |
| TCTGGTTTATGTCCTCAAGA+TGG | 0.622613 | 1.1:+64047280 | MS.gene005469:CDS |
| ACAGTTAGTGGATTCTCTGG+TGG | 0.623686 | 1.1:+64047601 | MS.gene005469:CDS |
| ATTTGTTAGCGACAAAGATG+AGG | 0.624187 | 1.1:+64048992 | MS.gene005469:CDS |
| ACCTTAGATGTCAAGAAAGG+AGG | 0.624457 | 1.1:+64048180 | MS.gene005469:CDS |
| ATGAGTTGTGGACACAAGAG+AGG | 0.634235 | 1.1:-64046688 | None:intergenic |
| GTGGTTACCATTATGACACA+AGG | 0.639125 | 1.1:+64047620 | MS.gene005469:CDS |
| AGCTGAATAAGGGAAATTGG+CGG | 0.640495 | 1.1:-64048415 | None:intergenic |
| GCCAGGTTCTCTGATTCACA+AGG | 0.645424 | 1.1:+64047066 | MS.gene005469:intron |
| CAATTCTACCTTCTAGACAT+GGG | 0.645465 | 1.1:+64048216 | MS.gene005469:CDS |
| AAAATGGTAACTATGACACT+AGG | 0.650526 | 1.1:+64047257 | MS.gene005469:CDS |
| CTCAAGTAAAGCATCAACCA+AGG | 0.657316 | 1.1:-64047571 | None:intergenic |
| AAGGTACCTCCATTTAAACC+AGG | 0.661640 | 1.1:+64047307 | MS.gene005469:CDS |
| TCTGGTGTGATATGAAATGG+TGG | 0.678495 | 1.1:-64048366 | None:intergenic |
| GGTTACCATTATGACACAAG+GGG | 0.678691 | 1.1:+64047622 | MS.gene005469:CDS |
| GGTCAAGAAGCTCCTCACAT+GGG | 0.681692 | 1.1:+64046804 | MS.gene005469:CDS |
| GTTAGTACATCTCCATCACA+AGG | 0.685016 | 1.1:-64048264 | None:intergenic |
| TGGTTACCATTATGACACAA+GGG | 0.690726 | 1.1:+64047621 | MS.gene005469:CDS |
| ATTGGTCTGAGAATGAGTTG+TGG | 0.699603 | 1.1:-64046700 | None:intergenic |
| GGAAGTTGTTGGAAGAACAA+TGG | 0.714098 | 1.1:+64048237 | MS.gene005469:CDS |
| GTGAAGTTAAAGACACACCA+AGG | 0.745244 | 1.1:+64047206 | MS.gene005469:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAAAAAAAAAAAACAGAAT+TGG | - | chr1.1:64047705-64047724 | None:intergenic | 10.0% |
| !! | AAAATGATTGTTTATTCATT+TGG | + | chr1.1:64048084-64048103 | MS.gene005469:intron | 15.0% |
| !! | CTCAACTTTAAATAAAATTT+AGG | + | chr1.1:64046958-64046977 | MS.gene005469:intron | 15.0% |
| !!! | CAAATTTGTATTTTATGTTA+TGG | + | chr1.1:64048804-64048823 | MS.gene005469:intron | 15.0% |
| !!! | TAAAAATAGAAGAAATTTTG+AGG | - | chr1.1:64046912-64046931 | None:intergenic | 15.0% |
| !! | AATTAAAATTGAACAGAACA+AGG | - | chr1.1:64047771-64047790 | None:intergenic | 20.0% |
| !! | AGGACTAAAATGAAATATTA+GGG | - | chr1.1:64046892-64046911 | None:intergenic | 20.0% |
| !! | ATATCTATTGTTAGTTAGTT+TGG | - | chr1.1:64047964-64047983 | None:intergenic | 20.0% |
| !! | ATTTAATGGTACTTATGATT+TGG | + | chr1.1:64047420-64047439 | MS.gene005469:CDS | 20.0% |
| !! | TTTAATGGTACTTATGATTT+GGG | + | chr1.1:64047421-64047440 | MS.gene005469:CDS | 20.0% |
| !!! | AAAGAGTAAACTAAACTTTT+GGG | + | chr1.1:64049121-64049140 | MS.gene005469:CDS | 20.0% |
| !!! | AATTGGAAAATTTGAAACAT+TGG | - | chr1.1:64047688-64047707 | None:intergenic | 20.0% |
| !!! | TAAAGAGTAAACTAAACTTT+TGG | + | chr1.1:64049120-64049139 | MS.gene005469:CDS | 20.0% |
| !!! | TAACAATCTTTCATTTTATG+AGG | + | chr1.1:64047477-64047496 | MS.gene005469:CDS | 20.0% |
| !!! | TTAGTCATCAAACTATTTTT+TGG | - | chr1.1:64049062-64049081 | None:intergenic | 20.0% |
| !!! | TTCCATTAATGTATTTTGTT+TGG | + | chr1.1:64047790-64047809 | MS.gene005469:intron | 20.0% |
| !!! | TTTGGACTAAACAAAATTTT+TGG | + | chr1.1:64047808-64047827 | MS.gene005469:intron | 20.0% |
| ! | AATAGTGATAAGCTGAATAA+GGG | - | chr1.1:64048428-64048447 | None:intergenic | 25.0% |
| ! | ACAGAAAAAGTTAACAAACT+TGG | + | chr1.1:64047091-64047110 | MS.gene005469:CDS | 25.0% |
| ! | ATAAGTTTCCATTAGTAAAG+TGG | - | chr1.1:64048740-64048759 | None:intergenic | 25.0% |
| ! | GAGGACTAAAATGAAATATT+AGG | - | chr1.1:64046893-64046912 | None:intergenic | 25.0% |
| ! | GGCTGAAATTTAAACTAAAA+TGG | - | chr1.1:64048129-64048148 | None:intergenic | 25.0% |
| ! | GTCCAAACAAAATACATTAA+TGG | - | chr1.1:64047795-64047814 | None:intergenic | 25.0% |
| ! | GTTAATCTCACCTTAAAATT+TGG | - | chr1.1:64048162-64048181 | None:intergenic | 25.0% |
| ! | TAATAGTGATAAGCTGAATA+AGG | - | chr1.1:64048429-64048448 | None:intergenic | 25.0% |
| ! | TATGGTTATCCCATTAAAAA+AGG | + | chr1.1:64048564-64048583 | MS.gene005469:CDS | 25.0% |
| ! | TTCAAATACTATTGTGACAA+CGG | + | chr1.1:64048043-64048062 | MS.gene005469:intron | 25.0% |
| ! | TTCAATTACCACTTTACTAA+TGG | + | chr1.1:64048729-64048748 | MS.gene005469:intron | 25.0% |
| ! | TTTATGTTATGGCGAAATTT+AGG | + | chr1.1:64048815-64048834 | MS.gene005469:intron | 25.0% |
| !! | AAACATACATTTTATTGTGC+AGG | + | chr1.1:64048911-64048930 | MS.gene005469:intron | 25.0% |
| !! | ACATGTAGTTTTTGTTACTA+TGG | + | chr1.1:64048864-64048883 | MS.gene005469:intron | 25.0% |
| !! | TGGATGATAATGTTGAAAAA+TGG | + | chr1.1:64047241-64047260 | MS.gene005469:CDS | 25.0% |
| !! | TTCATTTTATGAGGTTGTTT+GGG | + | chr1.1:64047486-64047505 | MS.gene005469:CDS | 25.0% |
| !! | TTTATTTAAAGTTGAGAACC+TGG | - | chr1.1:64046954-64046973 | None:intergenic | 25.0% |
| !! | TTTCATTTTATGAGGTTGTT+TGG | + | chr1.1:64047485-64047504 | MS.gene005469:CDS | 25.0% |
| !! | TTTGATGACTAATGTTTGTT+AGG | + | chr1.1:64049070-64049089 | MS.gene005469:intron | 25.0% |
| AAAATGGTAACTATGACACT+AGG | + | chr1.1:64047257-64047276 | MS.gene005469:CDS | 30.0% | |
| AAGTAGACTTTACTTCTATC+AGG | + | chr1.1:64048641-64048660 | MS.gene005469:CDS | 30.0% | |
| AGACTTCAAAGAAATATCCT+TGG | + | chr1.1:64047554-64047573 | MS.gene005469:CDS | 30.0% | |
| AGATCTTTATGCTGTTCAAA+AGG | + | chr1.1:64047162-64047181 | MS.gene005469:CDS | 30.0% | |
| ATAAGCTGAATAAGGGAAAT+TGG | - | chr1.1:64048421-64048440 | None:intergenic | 30.0% | |
| ATAAGTTTCCAAAAGTAGAG+TGG | - | chr1.1:64048682-64048701 | None:intergenic | 30.0% | |
| ATATGGACATCTATTGATAC+TGG | + | chr1.1:64048960-64048979 | MS.gene005469:CDS | 30.0% | |
| ATTATCATCCAAAATTGCCA+TGG | - | chr1.1:64047232-64047251 | None:intergenic | 30.0% | |
| CTAAATGAAAAACACATTCG+AGG | + | chr1.1:64047937-64047956 | MS.gene005469:intron | 30.0% | |
| GACACACTTCAAAAATGTTT+CGG | - | chr1.1:64047887-64047906 | None:intergenic | 30.0% | |
| GTTCAAAAGGAACTGTATTT+AGG | + | chr1.1:64047175-64047194 | MS.gene005469:CDS | 30.0% | |
| TAGGTGGAAAGAAAGAAAAT+AGG | + | chr1.1:64049089-64049108 | MS.gene005469:intron | 30.0% | |
| TATCCCATTAAAAAAGGTGA+TGG | + | chr1.1:64048570-64048589 | MS.gene005469:CDS | 30.0% | |
| TTAACCTTAGATGTCAAGAA+AGG | + | chr1.1:64048177-64048196 | MS.gene005469:CDS | 30.0% | |
| ! | CATTAAAAAAGGTGATGGTT+GGG | + | chr1.1:64048575-64048594 | MS.gene005469:CDS | 30.0% |
| ! | CTGAATATCTTTTTGTCATC+TGG | - | chr1.1:64048387-64048406 | None:intergenic | 30.0% |
| ! | TCTATGTTGTTTATGTCTTC+TGG | - | chr1.1:64047145-64047164 | None:intergenic | 30.0% |
| ! | TCTTGAGTCACCAAATTTTA+AGG | + | chr1.1:64048149-64048168 | MS.gene005469:CDS | 30.0% |
| ! | TGGAATTTTTGCAATGAAGT+TGG | + | chr1.1:64046783-64046802 | MS.gene005469:CDS | 30.0% |
| ! | TTAAAATTTGGTGACTCAAG+AGG | - | chr1.1:64048150-64048169 | None:intergenic | 30.0% |
| ! | TTCAATTACCACTCTACTTT+TGG | + | chr1.1:64048671-64048690 | MS.gene005469:intron | 30.0% |
| !! | AAAGTTAACAAACTTGGTGT+AGG | + | chr1.1:64047097-64047116 | MS.gene005469:CDS | 30.0% |
| !!! | CAACCATCACCTTTTTTAAT+GGG | - | chr1.1:64048576-64048595 | None:intergenic | 30.0% |
| !!! | GAATGTTTTGATCTTTCACA+AGG | + | chr1.1:64046843-64046862 | MS.gene005469:CDS | 30.0% |
| !!! | TTTTTTGTTGTTGTATGACC+AGG | + | chr1.1:64046933-64046952 | MS.gene005469:intron | 30.0% |
| AGAAGTAAAGTCTACTTGCT+AGG | - | chr1.1:64048638-64048657 | None:intergenic | 35.0% | |
| AGTTATTGCCTCATCCTATT+TGG | + | chr1.1:64048535-64048554 | MS.gene005469:CDS | 35.0% | |
| ATGTCCTCAAGATGGTAAAA+AGG | + | chr1.1:64047288-64047307 | MS.gene005469:CDS | 35.0% | |
| CAATTCTACCTTCTAGACAT+GGG | + | chr1.1:64048216-64048235 | MS.gene005469:CDS | 35.0% | |
| GACAAACACATCACACATTT+AGG | - | chr1.1:64047836-64047855 | None:intergenic | 35.0% | |
| GTAATGAGAGGAGGATTTAA+TGG | + | chr1.1:64047406-64047425 | MS.gene005469:CDS | 35.0% | |
| GTTATTGCCTCATCCTATTT+GGG | + | chr1.1:64048536-64048555 | MS.gene005469:CDS | 35.0% | |
| TAAGGATCACAAGTACTAAC+AGG | - | chr1.1:64048486-64048505 | None:intergenic | 35.0% | |
| TCAATTCTACCTTCTAGACA+TGG | + | chr1.1:64048215-64048234 | MS.gene005469:CDS | 35.0% | |
| TCATCTGGTGTGATATGAAA+TGG | - | chr1.1:64048372-64048391 | None:intergenic | 35.0% | |
| TGGTTACCATTATGACACAA+GGG | + | chr1.1:64047621-64047640 | MS.gene005469:CDS | 35.0% | |
| TGTGCTTGAGGATTACTATA+AGG | - | chr1.1:64048504-64048523 | None:intergenic | 35.0% | |
| TTATTGCCTCATCCTATTTG+GGG | + | chr1.1:64048537-64048556 | MS.gene005469:CDS | 35.0% | |
| ! | ACATTTTATTGTGCAGGATC+CGG | + | chr1.1:64048917-64048936 | MS.gene005469:intron | 35.0% |
| ! | ATTTGTTAGCGACAAAGATG+AGG | + | chr1.1:64048992-64049011 | MS.gene005469:CDS | 35.0% |
| ! | CCATTAAAAAAGGTGATGGT+TGG | + | chr1.1:64048574-64048593 | MS.gene005469:CDS | 35.0% |
| ! | GATGACTAATGTTTGTTAGG+TGG | + | chr1.1:64049073-64049092 | MS.gene005469:intron | 35.0% |
| ! | GTGTCTTTTGTTAGTCACTT+TGG | - | chr1.1:64047996-64048015 | None:intergenic | 35.0% |
| ! | TAGAAGGTAGAATTGACTCT+TGG | - | chr1.1:64048211-64048230 | None:intergenic | 35.0% |
| !!! | CCAACCATCACCTTTTTTAA+TGG | - | chr1.1:64048577-64048596 | None:intergenic | 35.0% |
| AACAACTTCCCATGTCTAGA+AGG | - | chr1.1:64048227-64048246 | None:intergenic | 40.0% | |
| AACCCATCTTGTGTCATCAA+TGG | + | chr1.1:64047365-64047384 | MS.gene005469:CDS | 40.0% | |
| AACCTTCCTGGTTTAAATGG+AGG | - | chr1.1:64047316-64047335 | None:intergenic | 40.0% | |
| ACAACGGTTCAAAATCACCT+CGG | - | chr1.1:64047040-64047059 | None:intergenic | 40.0% | |
| ACCTTAGATGTCAAGAAAGG+AGG | + | chr1.1:64048180-64048199 | MS.gene005469:CDS | 40.0% | |
| AGAACCTGGCAATACAACAA+CGG | - | chr1.1:64047056-64047075 | None:intergenic | 40.0% | |
| AGCTGAATAAGGGAAATTGG+CGG | - | chr1.1:64048418-64048437 | None:intergenic | 40.0% | |
| ATGCATCCTGTTCCAAAACA+AGG | - | chr1.1:64047340-64047359 | None:intergenic | 40.0% | |
| ATGGCGAAATTTAGGTGACA+CGG | + | chr1.1:64048823-64048842 | MS.gene005469:intron | 40.0% | |
| CAAAACATTCAGCTGCTCTT+GGG | - | chr1.1:64046833-64046852 | None:intergenic | 40.0% | |
| CTGGAAGATGATGTAATGAG+AGG | + | chr1.1:64047394-64047413 | MS.gene005469:CDS | 40.0% | |
| CTTCTCCTGCGAAAAGAATA+TGG | + | chr1.1:64048943-64048962 | MS.gene005469:CDS | 40.0% | |
| GAAGATGATGTAATGAGAGG+AGG | + | chr1.1:64047397-64047416 | MS.gene005469:CDS | 40.0% | |
| GACAATTGCCTAAACCTGTA+GGG | - | chr1.1:64048347-64048366 | None:intergenic | 40.0% | |
| GCAAAAATTCCAAGCTTCGA+AGG | - | chr1.1:64046775-64046794 | None:intergenic | 40.0% | |
| GGAAACCTTCCTGGTTTAAA+TGG | - | chr1.1:64047319-64047338 | None:intergenic | 40.0% | |
| GGAAGTTGTTGGAAGAACAA+TGG | + | chr1.1:64048237-64048256 | MS.gene005469:CDS | 40.0% | |
| GGTTACCATTATGACACAAG+GGG | + | chr1.1:64047622-64047641 | MS.gene005469:CDS | 40.0% | |
| GTGAAGTTAAAGACACACCA+AGG | + | chr1.1:64047206-64047225 | MS.gene005469:CDS | 40.0% | |
| GTGGTTACCATTATGACACA+AGG | + | chr1.1:64047620-64047639 | MS.gene005469:CDS | 40.0% | |
| GTTAGTACATCTCCATCACA+AGG | - | chr1.1:64048267-64048286 | None:intergenic | 40.0% | |
| GTTGTTTGGGAGAAGAAAGT+TGG | + | chr1.1:64047499-64047518 | MS.gene005469:CDS | 40.0% | |
| TAACCATACTCACCCCAAAT+AGG | - | chr1.1:64048552-64048571 | None:intergenic | 40.0% | |
| TACCTCCATTTAAACCAGGA+AGG | + | chr1.1:64047311-64047330 | MS.gene005469:CDS | 40.0% | |
| TATCACTATTACTGTGCTCC+AGG | + | chr1.1:64048438-64048457 | MS.gene005469:CDS | 40.0% | |
| TCAAAACATTCAGCTGCTCT+TGG | - | chr1.1:64046834-64046853 | None:intergenic | 40.0% | |
| TCCTCCTTTCTTGACATCTA+AGG | - | chr1.1:64048184-64048203 | None:intergenic | 40.0% | |
| TCTGGTGTGATATGAAATGG+TGG | - | chr1.1:64048369-64048388 | None:intergenic | 40.0% | |
| TGAACTATCTCTTGTGCTTG+AGG | - | chr1.1:64048516-64048535 | None:intergenic | 40.0% | |
| TTAGATGTCAAGAAAGGAGG+AGG | + | chr1.1:64048183-64048202 | MS.gene005469:CDS | 40.0% | |
| TTCTAGACATGGGAAGTTGT+TGG | + | chr1.1:64048226-64048245 | MS.gene005469:CDS | 40.0% | |
| TTGAGAGCTGATACAGTTAG+TGG | + | chr1.1:64047589-64047608 | MS.gene005469:CDS | 40.0% | |
| ! | AAAAAAGGTGATGGTTGGGT+TGG | + | chr1.1:64048579-64048598 | MS.gene005469:CDS | 40.0% |
| ! | AAGGTACCTCCATTTAAACC+AGG | + | chr1.1:64047307-64047326 | MS.gene005469:CDS | 40.0% |
| ! | ATTGATGACACAAGATGGGT+TGG | - | chr1.1:64047366-64047385 | None:intergenic | 40.0% |
| ! | ATTGGTCTGAGAATGAGTTG+TGG | - | chr1.1:64046703-64046722 | None:intergenic | 40.0% |
| ! | CATTTTATTGTGCAGGATCC+GGG | + | chr1.1:64048918-64048937 | MS.gene005469:intron | 40.0% |
| ! | CTCAAGTAAAGCATCAACCA+AGG | - | chr1.1:64047574-64047593 | None:intergenic | 40.0% |
| ! | GATGTCCATATTCTTTTCGC+AGG | - | chr1.1:64048951-64048970 | None:intergenic | 40.0% |
| ! | GGTACCTTTTTACCATCTTG+AGG | - | chr1.1:64047295-64047314 | None:intergenic | 40.0% |
| ! | GGTTCTAGTTGTAGAGATAG+TGG | + | chr1.1:64047442-64047461 | MS.gene005469:CDS | 40.0% |
| ! | GTCCATTGATGACACAAGAT+GGG | - | chr1.1:64047370-64047389 | None:intergenic | 40.0% |
| ! | TCATTTTACAACTGTCTCCG+AGG | + | chr1.1:64047020-64047039 | MS.gene005469:intron | 40.0% |
| ! | TCTAAATGTTGAGCATTGCC+TGG | - | chr1.1:64048459-64048478 | None:intergenic | 40.0% |
| ! | TCTGGTTTATGTCCTCAAGA+TGG | + | chr1.1:64047280-64047299 | MS.gene005469:CDS | 40.0% |
| ! | TGTCCATTGATGACACAAGA+TGG | - | chr1.1:64047371-64047390 | None:intergenic | 40.0% |
| !! | GATACAGTTAGTGGATTCTC+TGG | + | chr1.1:64047598-64047617 | MS.gene005469:CDS | 40.0% |
| !!! | AGGTTTCCTTGTTTTGGAAC+AGG | + | chr1.1:64047331-64047350 | MS.gene005469:CDS | 40.0% |
| AACAATGGTGCACCTTGTGA+TGG | + | chr1.1:64048252-64048271 | MS.gene005469:CDS | 45.0% | |
| ACCTTGTGAATCAGAGAACC+TGG | - | chr1.1:64047070-64047089 | None:intergenic | 45.0% | |
| ACTTGGGAACTTGATGTTGG+TGG | + | chr1.1:64048612-64048631 | MS.gene005469:CDS | 45.0% | |
| AGACCATCTCTTTGCATTCC+TGG | - | chr1.1:64046744-64046763 | None:intergenic | 45.0% | |
| AGGACTTGGGAACTTGATGT+TGG | + | chr1.1:64048609-64048628 | MS.gene005469:CDS | 45.0% | |
| ATCCAAAATTGCCATGGCCT+TGG | - | chr1.1:64047226-64047245 | None:intergenic | 45.0% | |
| ATGAGTTGTGGACACAAGAG+AGG | - | chr1.1:64046691-64046710 | None:intergenic | 45.0% | |
| CCAAAACAAGGAAACCTTCC+TGG | - | chr1.1:64047328-64047347 | None:intergenic | 45.0% | |
| GACCATCTCTTTGCATTCCT+GGG | - | chr1.1:64046743-64046762 | None:intergenic | 45.0% | |
| GCATTCCCCTTGTGTCATAA+TGG | - | chr1.1:64047630-64047649 | None:intergenic | 45.0% | |
| GGACAATTGCCTAAACCTGT+AGG | - | chr1.1:64048348-64048367 | None:intergenic | 45.0% | |
| GGTAACTATGACACTAGGTC+TGG | + | chr1.1:64047262-64047281 | MS.gene005469:CDS | 45.0% | |
| GTGTCATCAATGGACAAAGC+TGG | + | chr1.1:64047375-64047394 | MS.gene005469:CDS | 45.0% | |
| TAAGAGTAGCCTTCGAAGCT+TGG | + | chr1.1:64046763-64046782 | MS.gene005469:CDS | 45.0% | |
| TACTCACCCCAAATAGGATG+AGG | - | chr1.1:64048546-64048565 | None:intergenic | 45.0% | |
| TCAATCCAGAAACTCCAGCT+TGG | + | chr1.1:64048316-64048335 | MS.gene005469:CDS | 45.0% | |
| TGAACCGTTGTTGTATTGCC+AGG | + | chr1.1:64047049-64047068 | MS.gene005469:intron | 45.0% | |
| TGGCGAAATTTAGGTGACAC+GGG | + | chr1.1:64048824-64048843 | MS.gene005469:intron | 45.0% | |
| TGTTAGCGACAAAGATGAGG+TGG | + | chr1.1:64048995-64049014 | MS.gene005469:intron | 45.0% | |
| TTAAAGACACACCAAGGCCA+TGG | + | chr1.1:64047212-64047231 | MS.gene005469:CDS | 45.0% | |
| ! | CATCCTATTTGGGGTGAGTA+TGG | + | chr1.1:64048546-64048565 | MS.gene005469:CDS | 45.0% |
| !! | ACAGTTAGTGGATTCTCTGG+TGG | + | chr1.1:64047601-64047620 | MS.gene005469:CDS | 45.0% |
| !! | CCAGGAAGGTTTCCTTGTTT+TGG | + | chr1.1:64047325-64047344 | MS.gene005469:CDS | 45.0% |
| !! | GGGAGAAGAAAGTTGGTGTT+GGG | + | chr1.1:64047506-64047525 | MS.gene005469:CDS | 45.0% |
| !! | TGGGAGAAGAAAGTTGGTGT+TGG | + | chr1.1:64047505-64047524 | MS.gene005469:CDS | 45.0% |
| ACAAAGATGAGGTGGCAGAG+TGG | + | chr1.1:64049003-64049022 | MS.gene005469:intron | 50.0% | |
| ATGTCTTCTGGTCTCAGACC+AGG | - | chr1.1:64047133-64047152 | None:intergenic | 50.0% | |
| CAGACCAATGTCTCAGCTGT+AGG | + | chr1.1:64046714-64046733 | MS.gene005469:CDS | 50.0% | |
| CTACACCAAGCTGGAGTTTC+TGG | - | chr1.1:64048324-64048343 | None:intergenic | 50.0% | |
| GACCCAGGAATGCAAAGAGA+TGG | + | chr1.1:64046738-64046757 | MS.gene005469:CDS | 50.0% | |
| GCCAGGTTCTCTGATTCACA+AGG | + | chr1.1:64047066-64047085 | MS.gene005469:intron | 50.0% | |
| GGCGAAATTTAGGTGACACG+GGG | + | chr1.1:64048825-64048844 | MS.gene005469:intron | 50.0% | |
| GGTCAAGAAGCTCCTCACAT+GGG | + | chr1.1:64046804-64046823 | MS.gene005469:CDS | 50.0% | |
| GGTGTAGGAGAGTCATTACC+TGG | + | chr1.1:64047112-64047131 | MS.gene005469:CDS | 50.0% | |
| GTCTCCTACAGCTGAGACAT+TGG | - | chr1.1:64046721-64046740 | None:intergenic | 50.0% | |
| TGGTCAAGAAGCTCCTCACA+TGG | + | chr1.1:64046803-64046822 | MS.gene005469:CDS | 50.0% | |
| TGGTGTAGCCCTACAGGTTT+AGG | + | chr1.1:64048336-64048355 | MS.gene005469:CDS | 50.0% | |
| ! | CACCAAGGCCATGGCAATTT+TGG | + | chr1.1:64047221-64047240 | MS.gene005469:CDS | 50.0% |
| ! | CTTTTCGCAGGAGAAGTTCC+CGG | - | chr1.1:64048939-64048958 | None:intergenic | 50.0% |
| !! | AGAAAGTTGGTGTTGGGAGC+TGG | + | chr1.1:64047512-64047531 | MS.gene005469:CDS | 50.0% |
| !! | ATGGTTGGGTTGGTGATGCA+AGG | + | chr1.1:64048589-64048608 | MS.gene005469:CDS | 50.0% |
| !! | GGTTGGTGATGCAAGGACTT+GGG | + | chr1.1:64048596-64048615 | MS.gene005469:CDS | 50.0% |
| !! | GGGTTGGTGATGCAAGGACT+TGG | + | chr1.1:64048595-64048614 | MS.gene005469:CDS | 55.0% |
| CCTGTAGGGCTACACCAAGC+TGG | - | chr1.1:64048333-64048352 | None:intergenic | 60.0% | |
| GCTCTTGGGCTACCCATGTG+AGG | - | chr1.1:64046819-64046838 | None:intergenic | 60.0% | |
| GTCTCAGCTGTAGGAGACCC+AGG | + | chr1.1:64046723-64046742 | MS.gene005469:CDS | 60.0% | |
| !! | CCAGCTTGGTGTAGCCCTAC+AGG | + | chr1.1:64048330-64048349 | MS.gene005469:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.1 | gene | 64046633 | 64049148 | 64046633 | ID=MS.gene005469 |
| chr1.1 | mRNA | 64046633 | 64049148 | 64046633 | ID=MS.gene005469.t1;Parent=MS.gene005469 |
| chr1.1 | exon | 64046633 | 64046864 | 64046633 | ID=MS.gene005469.t1.exon1;Parent=MS.gene005469.t1 |
| chr1.1 | CDS | 64046633 | 64046864 | 64046633 | ID=cds.MS.gene005469.t1;Parent=MS.gene005469.t1 |
| chr1.1 | exon | 64047071 | 64047657 | 64047071 | ID=MS.gene005469.t1.exon2;Parent=MS.gene005469.t1 |
| chr1.1 | CDS | 64047071 | 64047657 | 64047071 | ID=cds.MS.gene005469.t1;Parent=MS.gene005469.t1 |
| chr1.1 | exon | 64048147 | 64048662 | 64048147 | ID=MS.gene005469.t1.exon3;Parent=MS.gene005469.t1 |
| chr1.1 | CDS | 64048147 | 64048662 | 64048147 | ID=cds.MS.gene005469.t1;Parent=MS.gene005469.t1 |
| chr1.1 | exon | 64048933 | 64049013 | 64048933 | ID=MS.gene005469.t1.exon4;Parent=MS.gene005469.t1 |
| chr1.1 | CDS | 64048933 | 64049013 | 64048933 | ID=cds.MS.gene005469.t1;Parent=MS.gene005469.t1 |
| chr1.1 | exon | 64049092 | 64049148 | 64049092 | ID=MS.gene005469.t1.exon5;Parent=MS.gene005469.t1 |
| chr1.1 | CDS | 64049092 | 64049148 | 64049092 | ID=cds.MS.gene005469.t1;Parent=MS.gene005469.t1 |
| Gene Sequence |
| Protein sequence |
