Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene039956.t1 | XP_003601051.1 | 75.9 | 398 | 48 | 2 | 1 | 350 | 1 | 398 | 2.10E-92 | 349.4 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene039956.t1 | G7J309 | 75.9 | 398 | 48 | 2 | 1 | 350 | 1 | 398 | 1.5e-92 | 349.4 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene007964 | MS.gene039956 | PPI |
| MS.gene039956 | MS.gene031884 | PPI |
| MS.gene039956 | MS.gene99887 | PPI |
| MS.gene039956 | MS.gene007964 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene039956.t1 | MTR_3g072480 | 83.668 | 398 | 17 | 2 | 1 | 350 | 1 | 398 | 0.0 | 612 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene039956.t1 | AT1G44780 | 44.444 | 342 | 148 | 9 | 12 | 348 | 64 | 368 | 6.45e-63 | 208 |
| MS.gene039956.t1 | AT1G44780 | 44.152 | 342 | 150 | 8 | 12 | 348 | 64 | 369 | 1.12e-62 | 208 |
| MS.gene039956.t1 | AT4G08310 | 43.769 | 329 | 164 | 8 | 27 | 350 | 89 | 401 | 3.50e-60 | 202 |
Find 71 sgRNAs with CRISPR-Local
Find 163 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTTACTTATAAACTTCTTAA+AGG | 0.192372 | 3.1:-59365348 | None:intergenic |
| CCCATTGCCTTCTGCTATCT+TGG | 0.207283 | 3.1:-59365016 | None:intergenic |
| TCTTCTGATGCTGCTTTATC+AGG | 0.212935 | 3.1:-59365731 | None:intergenic |
| CCCTGAAGATGAGGAGAAAA+TGG | 0.258537 | 3.1:+59364939 | MS.gene039956:CDS |
| TTTAATAGCTTTCTTAATTA+GGG | 0.269138 | 3.1:-59365061 | None:intergenic |
| GGGTAGTCTTCGCCGATTAT+TGG | 0.304072 | 3.1:+59365289 | MS.gene039956:CDS |
| TCTGAGGAGGACGGGGAAAA+AGG | 0.327743 | 3.1:+59364853 | MS.gene039956:CDS |
| GGAGTCTGCATCTTGCCTTT+TGG | 0.346161 | 3.1:-59365647 | None:intergenic |
| CGGACAACTAATTAAAGAAT+TGG | 0.355478 | 3.1:+59366266 | MS.gene039956:CDS |
| ATGGAAGATTCTCCGGTATT+AGG | 0.360072 | 3.1:+59364958 | MS.gene039956:CDS |
| TTAGCACTTTCTGCAGGTTC+CGG | 0.360550 | 3.1:-59365500 | None:intergenic |
| TTACTTATAAACTTCTTAAA+GGG | 0.364968 | 3.1:-59365347 | None:intergenic |
| ATTAATGTCTTCTGAAGTTC+CGG | 0.373428 | 3.1:+59365481 | MS.gene039956:CDS |
| TAAGATCTTCCTCCAATAAT+CGG | 0.374296 | 3.1:-59365301 | None:intergenic |
| TTCTTAATTAGGGTCTCATT+TGG | 0.378832 | 3.1:-59365051 | None:intergenic |
| CAATCTACCCAGCAAGAAAA+AGG | 0.390333 | 3.1:+59365703 | MS.gene039956:CDS |
| TGATACTAAAGCAACTAAAA+AGG | 0.402536 | 3.1:+59365544 | MS.gene039956:CDS |
| AGGTCTGCTTAAAGAACAAA+AGG | 0.410447 | 3.1:+59364978 | MS.gene039956:CDS |
| GTCCTCCTCAGACGTCTTTG+TGG | 0.425698 | 3.1:-59364842 | None:intergenic |
| TGATTTCAGAAATGTAACTT+TGG | 0.426248 | 3.1:+59365268 | MS.gene039956:intron |
| GATTTCAGAAATGTAACTTT+GGG | 0.430263 | 3.1:+59365269 | MS.gene039956:intron |
| CAAATAATGAAGCTAACATT+CGG | 0.431722 | 3.1:-59366384 | None:intergenic |
| TTATTTCTGCCACAGTGCTT+AGG | 0.445202 | 3.1:+59364796 | MS.gene039956:intron |
| AAATAATGAAGCTAACATTC+GGG | 0.456769 | 3.1:-59366383 | None:intergenic |
| AGCAGGTCCCTGAAAACAAA+CGG | 0.472188 | 3.1:+59366241 | MS.gene039956:CDS |
| CGTTTACTGTACACAGGAGT+TGG | 0.472645 | 3.1:-59366068 | None:intergenic |
| CCAAGATAGCAGAAGGCAAT+GGG | 0.479554 | 3.1:+59365016 | MS.gene039956:CDS |
| ACATCAATCTAAAGATGAAA+AGG | 0.481334 | 3.1:+59364912 | MS.gene039956:CDS |
| CCACAGTGCTTAGGAGAGGC+TGG | 0.495291 | 3.1:+59364805 | MS.gene039956:intron |
| CAAAGACGTCTGAGGAGGAC+GGG | 0.495426 | 3.1:+59364845 | MS.gene039956:CDS |
| AGTATTCTCTGCTGACGAAT+GGG | 0.496613 | 3.1:-59365801 | None:intergenic |
| CTTCATACCATCTTCTGCCA+TGG | 0.507544 | 3.1:-59363317 | None:intergenic |
| AAATCTGTTATTAAAGCATG+TGG | 0.508183 | 3.1:+59366104 | MS.gene039956:CDS |
| GGCAAGATGCAGACTCCTGT+TGG | 0.510887 | 3.1:+59365653 | MS.gene039956:CDS |
| GGAGAAAATGGAAGATTCTC+CGG | 0.519838 | 3.1:+59364951 | MS.gene039956:CDS |
| GTGAGAAACGCGAGAGCGCA+TGG | 0.525813 | 3.1:-59363386 | None:intergenic |
| GTCTTCAAATCCATCTGAGA+AGG | 0.532832 | 3.1:+59366314 | MS.gene039956:CDS |
| ACCAAGATAGCAGAAGGCAA+TGG | 0.540066 | 3.1:+59365015 | MS.gene039956:CDS |
| GGTCTGCTTAAAGAACAAAA+GGG | 0.541386 | 3.1:+59364979 | MS.gene039956:CDS |
| TAGTATTCTCTGCTGACGAA+TGG | 0.542456 | 3.1:-59365802 | None:intergenic |
| GCAGGTCCCTGAAAACAAAC+GGG | 0.543917 | 3.1:+59366242 | MS.gene039956:CDS |
| TAGTCTTCGCCGATTATTGG+AGG | 0.546979 | 3.1:+59365292 | MS.gene039956:CDS |
| TCTTTAAGCAGACCTAATAC+CGG | 0.555361 | 3.1:-59364970 | None:intergenic |
| AGAGAGACCATGGCAGAAGA+TGG | 0.563600 | 3.1:+59363310 | None:intergenic |
| TTCAGATGAAGAGAGTGAAG+AGG | 0.569278 | 3.1:+59365592 | MS.gene039956:CDS |
| ACAAGAGACTGAAGGACAGA+AGG | 0.569598 | 3.1:+59364885 | MS.gene039956:CDS |
| ACAAAGACGTCTGAGGAGGA+CGG | 0.573683 | 3.1:+59364844 | MS.gene039956:CDS |
| CAAGAAACCAAGATAGCAGA+AGG | 0.585200 | 3.1:+59365009 | MS.gene039956:CDS |
| TCTTCAAATCCATCTGAGAA+GGG | 0.588082 | 3.1:+59366315 | MS.gene039956:CDS |
| AAAGGATCTCCCTGAAGATG+AGG | 0.591029 | 3.1:+59364930 | MS.gene039956:CDS |
| AGAGACTGAAGGACAGAAGG+AGG | 0.595213 | 3.1:+59364888 | MS.gene039956:CDS |
| GAAGAAATACTATCTAGAGA+AGG | 0.598424 | 3.1:+59366288 | MS.gene039956:CDS |
| GTCTGCTTAAAGAACAAAAG+GGG | 0.608849 | 3.1:+59364980 | MS.gene039956:CDS |
| TATAAGTAAAGAGCTTGATG+AGG | 0.612914 | 3.1:+59365361 | MS.gene039956:CDS |
| AAAGACGTCTGAGGAGGACG+GGG | 0.615894 | 3.1:+59364846 | MS.gene039956:CDS |
| TTATTAAAGCATGTGGGATG+AGG | 0.618988 | 3.1:+59366111 | MS.gene039956:CDS |
| GTCCCTGAAAACAAACGGGA+CGG | 0.623725 | 3.1:+59366246 | MS.gene039956:CDS |
| CATACTCTGCATTAGCCTTG+AGG | 0.627628 | 3.1:-59365098 | None:intergenic |
| TCTGCCACAGTGCTTAGGAG+AGG | 0.635941 | 3.1:+59364801 | MS.gene039956:intron |
| AATAGTGATGCAGAAGACGA+TGG | 0.643756 | 3.1:+59365755 | MS.gene039956:CDS |
| TCCTGTGTACAGTAAACGTG+TGG | 0.644428 | 3.1:+59366073 | MS.gene039956:CDS |
| TCTGCTTAAAGAACAAAAGG+GGG | 0.658439 | 3.1:+59364981 | MS.gene039956:CDS |
| TGATGCCACAAAGACGTCTG+AGG | 0.660915 | 3.1:+59364837 | MS.gene039956:CDS |
| GAAAGTACACAAGAGACTGA+AGG | 0.670007 | 3.1:+59364877 | MS.gene039956:CDS |
| TGCCACAAAGACGTCTGAGG+AGG | 0.671550 | 3.1:+59364840 | MS.gene039956:CDS |
| TCCACACGTTTACTGTACAC+AGG | 0.676303 | 3.1:-59366074 | None:intergenic |
| AATCTGTTATTAAAGCATGT+GGG | 0.677116 | 3.1:+59366105 | MS.gene039956:CDS |
| AATAATGAAGCTAACATTCG+GGG | 0.697897 | 3.1:-59366382 | None:intergenic |
| GTCAGCAGAGAATACTACCA+AGG | 0.702422 | 3.1:+59365808 | MS.gene039956:CDS |
| CTGCTTAAAGAACAAAAGGG+GGG | 0.713202 | 3.1:+59364982 | MS.gene039956:CDS |
| AGAAACGCGAGAGCGCATGG+CGG | 0.788364 | 3.1:-59363383 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AGTAATTATTTCATTATATA+AGG | - | chr3.1:59365928-59365947 | None:intergenic | 10.0% |
| !! | AAACAATATAACTTCAAATT+TGG | - | chr3.1:59364202-59364221 | None:intergenic | 15.0% |
| !! | AAATCCAAATAAAAGAATAA+AGG | - | chr3.1:59364382-59364401 | None:intergenic | 15.0% |
| !! | ATTAATATCAGCATATTATT+TGG | + | chr3.1:59365204-59365223 | MS.gene039956:intron | 15.0% |
| !! | GTTAAATGTATTAAATATGT+TGG | + | chr3.1:59365980-59365999 | MS.gene039956:intron | 15.0% |
| !! | TTACTTATAAACTTCTTAAA+GGG | - | chr3.1:59365350-59365369 | None:intergenic | 15.0% |
| !! | TTTAATAGCTTTCTTAATTA+GGG | - | chr3.1:59365064-59365083 | None:intergenic | 15.0% |
| !! | TTTACTTATAAACTTCTTAA+AGG | - | chr3.1:59365351-59365370 | None:intergenic | 15.0% |
| !!! | CTTGACTTTTTTATAAATAA+CGG | - | chr3.1:59366223-59366242 | None:intergenic | 15.0% |
| !!! | TTGACTTTTTTATAAATAAC+GGG | - | chr3.1:59366222-59366241 | None:intergenic | 15.0% |
| !!! | TTTATTTGGATTTTGTTTTA+TGG | + | chr3.1:59364389-59364408 | MS.gene039956:intron | 15.0% |
| !!! | TTTTAATAGCTTTCTTAATT+AGG | - | chr3.1:59365065-59365084 | None:intergenic | 15.0% |
| !! | AAAAATAGCTTATACATAAG+TGG | - | chr3.1:59363722-59363741 | None:intergenic | 20.0% |
| !! | ATACATTTATACTTGACTTA+TGG | - | chr3.1:59364666-59364685 | None:intergenic | 20.0% |
| !! | GAATAATTTAGTAATAACCT+TGG | - | chr3.1:59365828-59365847 | None:intergenic | 20.0% |
| !! | TATTTATAAAAAAGTCAAGC+AGG | + | chr3.1:59366224-59366243 | MS.gene039956:CDS | 20.0% |
| !! | TATTTCATTATATAAGGAGT+TGG | - | chr3.1:59365922-59365941 | None:intergenic | 20.0% |
| !!! | AAAAAAAAAAGTGTTCCAAA+AGG | + | chr3.1:59365632-59365651 | MS.gene039956:CDS | 20.0% |
| !!! | TAAACTTGATAAATTTTCTC+TGG | + | chr3.1:59365322-59365341 | MS.gene039956:CDS | 20.0% |
| !!! | TATGCTTTTACTTCATTTTA+TGG | + | chr3.1:59364565-59364584 | MS.gene039956:intron | 20.0% |
| !!! | TTTGGAACACTTTTTTTTTT+AGG | - | chr3.1:59365632-59365651 | None:intergenic | 20.0% |
| !!! | TTTTCTAATTATTCGTTGTT+CGG | + | chr3.1:59365129-59365148 | MS.gene039956:intron | 20.0% |
| ! | AAATAATGAAGCTAACATTC+GGG | - | chr3.1:59366386-59366405 | None:intergenic | 25.0% |
| ! | AAATCTGTTATTAAAGCATG+TGG | + | chr3.1:59366104-59366123 | MS.gene039956:CDS | 25.0% |
| ! | AATCTGTTATTAAAGCATGT+GGG | + | chr3.1:59366105-59366124 | MS.gene039956:CDS | 25.0% |
| ! | ACATCAATCTAAAGATGAAA+AGG | + | chr3.1:59364912-59364931 | MS.gene039956:CDS | 25.0% |
| ! | CAAAGTTATGTTTAATGTGA+AGG | + | chr3.1:59365457-59365476 | MS.gene039956:intron | 25.0% |
| ! | CAAATAATGAAGCTAACATT+CGG | - | chr3.1:59366387-59366406 | None:intergenic | 25.0% |
| ! | GATTTCAGAAATGTAACTTT+GGG | + | chr3.1:59365269-59365288 | MS.gene039956:intron | 25.0% |
| ! | GTATGAAATGACATAAAAAG+AGG | - | chr3.1:59364044-59364063 | None:intergenic | 25.0% |
| ! | TAAAAGAATAAAGGTCTGTT+TGG | - | chr3.1:59364373-59364392 | None:intergenic | 25.0% |
| ! | TATCAAACAATCTTTAGACA+AGG | + | chr3.1:59363603-59363622 | MS.gene039956:intron | 25.0% |
| ! | TGATACTAAAGCAACTAAAA+AGG | + | chr3.1:59365544-59365563 | MS.gene039956:CDS | 25.0% |
| ! | TGATTTCAGAAATGTAACTT+TGG | + | chr3.1:59365268-59365287 | MS.gene039956:intron | 25.0% |
| !! | CAGACCTTTATTCTTTTATT+TGG | + | chr3.1:59364375-59364394 | MS.gene039956:intron | 25.0% |
| !!! | AAGTTATAAGCTGTTTTCAT+AGG | + | chr3.1:59363781-59363800 | MS.gene039956:intron | 25.0% |
| !!! | ACTTTTTTATAAATAACGGG+AGG | - | chr3.1:59366219-59366238 | None:intergenic | 25.0% |
| !!! | AGTTATAAGCTGTTTTCATA+GGG | + | chr3.1:59363782-59363801 | MS.gene039956:intron | 25.0% |
| !!! | TGTATTTTTGTGCTTCTTAT+GGG | - | chr3.1:59365422-59365441 | None:intergenic | 25.0% |
| !!! | TGTGGATTTTAAAAATTACC+TGG | + | chr3.1:59364470-59364489 | MS.gene039956:intron | 25.0% |
| !!! | TTCTGAAGTTCAAGAAAAAA+AGG | - | chr3.1:59366032-59366051 | None:intergenic | 25.0% |
| !!! | TTTTTAGTTGCTTTAGTATC+AGG | - | chr3.1:59365545-59365564 | None:intergenic | 25.0% |
| !!! | TTTTTCAATTCAGATTGCAA+GGG | - | chr3.1:59364000-59364019 | None:intergenic | 25.0% |
| !!! | TTTTTTCAATTCAGATTGCA+AGG | - | chr3.1:59364001-59364020 | None:intergenic | 25.0% |
| AAAAAGATCTTCATACCTCA+AGG | + | chr3.1:59365083-59365102 | MS.gene039956:CDS | 30.0% | |
| AAGCTATAAGCTACTTGAAT+TGG | - | chr3.1:59363954-59363973 | None:intergenic | 30.0% | |
| AAGCTATCTTGGAGAAATTA+TGG | + | chr3.1:59364248-59364267 | MS.gene039956:intron | 30.0% | |
| AATAATGAAGCTAACATTCG+GGG | - | chr3.1:59366385-59366404 | None:intergenic | 30.0% | |
| AGAAGAGAAAGAAACAAACT+CGG | - | chr3.1:59363425-59363444 | None:intergenic | 30.0% | |
| ATAACCTTGTAAGAAAGTGA+CGG | - | chr3.1:59363894-59363913 | None:intergenic | 30.0% | |
| CGGACAACTAATTAAAGAAT+TGG | + | chr3.1:59366266-59366285 | MS.gene039956:CDS | 30.0% | |
| GAAGAAATACTATCTAGAGA+AGG | + | chr3.1:59366288-59366307 | MS.gene039956:CDS | 30.0% | |
| TAAGATCTTCCTCCAATAAT+CGG | - | chr3.1:59365304-59365323 | None:intergenic | 30.0% | |
| TAGCTGAAGAAACTTATTGT+TGG | + | chr3.1:59364529-59364548 | MS.gene039956:intron | 30.0% | |
| TAGCTTATGAAAACAGCTTA+TGG | - | chr3.1:59364234-59364253 | None:intergenic | 30.0% | |
| TATAAGTAAAGAGCTTGATG+AGG | + | chr3.1:59365361-59365380 | MS.gene039956:CDS | 30.0% | |
| TATATGTGATGAAGAATGCT+TGG | + | chr3.1:59364742-59364761 | MS.gene039956:intron | 30.0% | |
| TTCTTAATTAGGGTCTCATT+TGG | - | chr3.1:59365054-59365073 | None:intergenic | 30.0% | |
| TTGGTTGAATTTGTAGTGTT+TGG | - | chr3.1:59364095-59364114 | None:intergenic | 30.0% | |
| ! | GATGAGGTGATTTTCTATTT+TGG | + | chr3.1:59366127-59366146 | MS.gene039956:intron | 30.0% |
| !! | ATTAATGTCTTCTGAAGTTC+CGG | + | chr3.1:59365481-59365500 | MS.gene039956:CDS | 30.0% |
| !! | GTGTATTTTTGTGCTTCTTA+TGG | - | chr3.1:59365423-59365442 | None:intergenic | 30.0% |
| !! | TAGGGTTTTTCAAAGGAAAA+AGG | - | chr3.1:59363639-59363658 | None:intergenic | 30.0% |
| !! | TTGGAATTAGGGTTTTTCAA+AGG | - | chr3.1:59363646-59363665 | None:intergenic | 30.0% |
| !!! | ACCAAAAGTTTTAGACTGTT+TGG | - | chr3.1:59364325-59364344 | None:intergenic | 30.0% |
| !!! | CCAAAAGTTTTAGACTGTTT+GGG | - | chr3.1:59364324-59364343 | None:intergenic | 30.0% |
| AGATTGCTCGAGAAAGATTT+AGG | + | chr3.1:59363544-59363563 | MS.gene039956:intron | 35.0% | |
| AGGTCTGCTTAAAGAACAAA+AGG | + | chr3.1:59364978-59364997 | MS.gene039956:CDS | 35.0% | |
| ATCATCCTCAACAAAGAACT+AGG | - | chr3.1:59366164-59366183 | None:intergenic | 35.0% | |
| CAACAAAGAACTAGGAACAT+AGG | - | chr3.1:59366156-59366175 | None:intergenic | 35.0% | |
| CTATCATCACTAGATGAAAG+TGG | - | chr3.1:59364708-59364727 | None:intergenic | 35.0% | |
| GAATAAAGGTCTGTTTGGAT+TGG | - | chr3.1:59364368-59364387 | None:intergenic | 35.0% | |
| GACTTATGGTAACCAAAGTT+TGG | - | chr3.1:59364652-59364671 | None:intergenic | 35.0% | |
| GATTGCTCGAGAAAGATTTA+GGG | + | chr3.1:59363545-59363564 | MS.gene039956:intron | 35.0% | |
| GGTCTGCTTAAAGAACAAAA+GGG | + | chr3.1:59364979-59364998 | MS.gene039956:CDS | 35.0% | |
| GTCTGCTTAAAGAACAAAAG+GGG | + | chr3.1:59364980-59364999 | MS.gene039956:CDS | 35.0% | |
| TCTGCTTAAAGAACAAAAGG+GGG | + | chr3.1:59364981-59365000 | MS.gene039956:CDS | 35.0% | |
| TCTTCAAATCCATCTGAGAA+GGG | + | chr3.1:59366315-59366334 | MS.gene039956:CDS | 35.0% | |
| TCTTTAAGCAGACCTAATAC+CGG | - | chr3.1:59364973-59364992 | None:intergenic | 35.0% | |
| TGTATTCAGCTTAAGTGAAG+AGG | - | chr3.1:59364608-59364627 | None:intergenic | 35.0% | |
| TTATACATATGCGTTTGCGT+TGG | - | chr3.1:59363665-59363684 | None:intergenic | 35.0% | |
| TTATTAAAGCATGTGGGATG+AGG | + | chr3.1:59366111-59366130 | MS.gene039956:CDS | 35.0% | |
| ! | ATGTTCCTAGTTCTTTGTTG+AGG | + | chr3.1:59366156-59366175 | MS.gene039956:intron | 35.0% |
| ! | ATTTTCTTAGCACTTTCTGC+AGG | - | chr3.1:59365509-59365528 | None:intergenic | 35.0% |
| ! | TGTTTTGTGTGACCAAACTT+TGG | + | chr3.1:59364637-59364656 | MS.gene039956:intron | 35.0% |
| !! | CCCAAACAGTCTAAAACTTT+TGG | + | chr3.1:59364321-59364340 | MS.gene039956:intron | 35.0% |
| !! | GCTGTTTTCATAAGCTATCT+TGG | + | chr3.1:59364237-59364256 | MS.gene039956:intron | 35.0% |
| !! | TCATCTCCTTTACGCTTTTT+GGG | - | chr3.1:59365680-59365699 | None:intergenic | 35.0% |
| !!! | TGCTGAAAAGTTGGTTTTTC+TGG | + | chr3.1:59364438-59364457 | MS.gene039956:intron | 35.0% |
| AAAAACTCACCCTTCTCAGA+TGG | - | chr3.1:59366327-59366346 | None:intergenic | 40.0% | |
| AATAGTGATGCAGAAGACGA+TGG | + | chr3.1:59365755-59365774 | MS.gene039956:CDS | 40.0% | |
| AGTATTCTCTGCTGACGAAT+GGG | - | chr3.1:59365804-59365823 | None:intergenic | 40.0% | |
| ATGCGTTTGCGTTGGAATTA+GGG | - | chr3.1:59363657-59363676 | None:intergenic | 40.0% | |
| ATGGAAGATTCTCCGGTATT+AGG | + | chr3.1:59364958-59364977 | MS.gene039956:CDS | 40.0% | |
| CAAGAAACCAAGATAGCAGA+AGG | + | chr3.1:59365009-59365028 | MS.gene039956:CDS | 40.0% | |
| CAATCTACCCAGCAAGAAAA+AGG | + | chr3.1:59365703-59365722 | MS.gene039956:CDS | 40.0% | |
| CTGCTTAAAGAACAAAAGGG+GGG | + | chr3.1:59364982-59365001 | MS.gene039956:CDS | 40.0% | |
| GCTTATAAGTCATCCGCTAT+AGG | + | chr3.1:59364144-59364163 | MS.gene039956:intron | 40.0% | |
| GGAGAAAATGGAAGATTCTC+CGG | + | chr3.1:59364951-59364970 | MS.gene039956:CDS | 40.0% | |
| GTCTTCAAATCCATCTGAGA+AGG | + | chr3.1:59366314-59366333 | MS.gene039956:CDS | 40.0% | |
| TAGTATTCTCTGCTGACGAA+TGG | - | chr3.1:59365805-59365824 | None:intergenic | 40.0% | |
| TATGCGTTTGCGTTGGAATT+AGG | - | chr3.1:59363658-59363677 | None:intergenic | 40.0% | |
| TTCAGATGAAGAGAGTGAAG+AGG | + | chr3.1:59365592-59365611 | MS.gene039956:CDS | 40.0% | |
| TTCTGCTGTTGCTGAAAAGT+TGG | + | chr3.1:59364429-59364448 | MS.gene039956:intron | 40.0% | |
| ! | AGCTAGCTTATAGCTCATAG+CGG | - | chr3.1:59364127-59364146 | None:intergenic | 40.0% |
| ! | AGGGTTTGACGAGTTTTCTT+TGG | + | chr3.1:59363564-59363583 | MS.gene039956:intron | 40.0% |
| ! | CCATTTTCTCCTCATCTTCA+GGG | - | chr3.1:59364942-59364961 | None:intergenic | 40.0% |
| ! | CTAACCGTCACTTTCTTACA+AGG | + | chr3.1:59363887-59363906 | MS.gene039956:intron | 40.0% |
| ! | CTGTTTTCATAGGGTCTGTT+TGG | + | chr3.1:59363791-59363810 | MS.gene039956:intron | 40.0% |
| ! | CTTTTTCTTGCTGGGTAGAT+TGG | - | chr3.1:59365705-59365724 | None:intergenic | 40.0% |
| ! | GAAAGTACACAAGAGACTGA+AGG | + | chr3.1:59364877-59364896 | MS.gene039956:CDS | 40.0% |
| ! | GTCATCTCCTTTACGCTTTT+TGG | - | chr3.1:59365681-59365700 | None:intergenic | 40.0% |
| ! | TCCATTTTCTCCTCATCTTC+AGG | - | chr3.1:59364943-59364962 | None:intergenic | 40.0% |
| ! | TTACCTGGCTTGTCAAATAC+CGG | + | chr3.1:59364485-59364504 | MS.gene039956:intron | 40.0% |
| !! | CTCATAGCGGATAAGATAGT+TGG | - | chr3.1:59364114-59364133 | None:intergenic | 40.0% |
| !! | TCTTCTGATGCTGCTTTATC+AGG | - | chr3.1:59365734-59365753 | None:intergenic | 40.0% |
| !! | TTATTTCTGCCACAGTGCTT+AGG | + | chr3.1:59364796-59364815 | MS.gene039956:intron | 40.0% |
| !!! | TTTTTCTGGCTGTTTCTGTG+TGG | + | chr3.1:59364452-59364471 | MS.gene039956:intron | 40.0% |
| AAAGGATCTCCCTGAAGATG+AGG | + | chr3.1:59364930-59364949 | MS.gene039956:CDS | 45.0% | |
| ACAAGAGACTGAAGGACAGA+AGG | + | chr3.1:59364885-59364904 | MS.gene039956:CDS | 45.0% | |
| ACCAAGATAGCAGAAGGCAA+TGG | + | chr3.1:59365015-59365034 | MS.gene039956:CDS | 45.0% | |
| AGCAGGTCCCTGAAAACAAA+CGG | + | chr3.1:59366241-59366260 | MS.gene039956:CDS | 45.0% | |
| CCAAGATAGCAGAAGGCAAT+GGG | + | chr3.1:59365016-59365035 | MS.gene039956:CDS | 45.0% | |
| CCCTGAAGATGAGGAGAAAA+TGG | + | chr3.1:59364939-59364958 | MS.gene039956:CDS | 45.0% | |
| CGTTTACTGTACACAGGAGT+TGG | - | chr3.1:59366071-59366090 | None:intergenic | 45.0% | |
| GGCTTGTCAAATACCGGAAA+TGG | + | chr3.1:59364491-59364510 | MS.gene039956:intron | 45.0% | |
| GTCAGCAGAGAATACTACCA+AGG | + | chr3.1:59365808-59365827 | MS.gene039956:CDS | 45.0% | |
| TCCACACGTTTACTGTACAC+AGG | - | chr3.1:59366077-59366096 | None:intergenic | 45.0% | |
| TCCTGTGTACAGTAAACGTG+TGG | + | chr3.1:59366073-59366092 | MS.gene039956:CDS | 45.0% | |
| TGTCAAATACCGGAAATGGC+AGG | + | chr3.1:59364495-59364514 | MS.gene039956:intron | 45.0% | |
| TTAGCACTTTCTGCAGGTTC+CGG | - | chr3.1:59365503-59365522 | None:intergenic | 45.0% | |
| TTTCCGGTATTTGACAAGCC+AGG | - | chr3.1:59364491-59364510 | None:intergenic | 45.0% | |
| ! | AGGCTTGACCTTTTTCTTGC+TGG | - | chr3.1:59365714-59365733 | None:intergenic | 45.0% |
| ! | GCAGATAAGCTAGCCTATAG+CGG | - | chr3.1:59364160-59364179 | None:intergenic | 45.0% |
| ! | GGCTTGACCTTTTTCTTGCT+GGG | - | chr3.1:59365713-59365732 | None:intergenic | 45.0% |
| ! | GTTGGACCCAAAAAGCGTAA+AGG | + | chr3.1:59365671-59365690 | MS.gene039956:CDS | 45.0% |
| ! | TAGTCTTCGCCGATTATTGG+AGG | + | chr3.1:59365292-59365311 | MS.gene039956:CDS | 45.0% |
| !! | CATACTCTGCATTAGCCTTG+AGG | - | chr3.1:59365101-59365120 | None:intergenic | 45.0% |
| !!! | TTACGCTTTTTGGGTCCAAC+AGG | - | chr3.1:59365671-59365690 | None:intergenic | 45.0% |
| ACAAAGACGTCTGAGGAGGA+CGG | + | chr3.1:59364844-59364863 | MS.gene039956:CDS | 50.0% | |
| AGAGACTGAAGGACAGAAGG+AGG | + | chr3.1:59364888-59364907 | MS.gene039956:CDS | 50.0% | |
| ATACCGGAAATGGCAGGTCA+TGG | + | chr3.1:59364501-59364520 | MS.gene039956:intron | 50.0% | |
| CCCATTGCCTTCTGCTATCT+TGG | - | chr3.1:59365019-59365038 | None:intergenic | 50.0% | |
| GCAGGTCCCTGAAAACAAAC+GGG | + | chr3.1:59366242-59366261 | MS.gene039956:CDS | 50.0% | |
| GTCCCTGAAAACAAACGGGA+CGG | + | chr3.1:59366246-59366265 | MS.gene039956:CDS | 50.0% | |
| TACCGGAAATGGCAGGTCAT+GGG | + | chr3.1:59364502-59364521 | MS.gene039956:intron | 50.0% | |
| TGATGCCACAAAGACGTCTG+AGG | + | chr3.1:59364837-59364856 | MS.gene039956:CDS | 50.0% | |
| ! | GGAGTCTGCATCTTGCCTTT+TGG | - | chr3.1:59365650-59365669 | None:intergenic | 50.0% |
| ! | GGGTAGTCTTCGCCGATTAT+TGG | + | chr3.1:59365289-59365308 | MS.gene039956:CDS | 50.0% |
| !! | GTCCGTCCCGTTTGTTTTCA+GGG | - | chr3.1:59366251-59366270 | None:intergenic | 50.0% |
| !! | TGTCCGTCCCGTTTGTTTTC+AGG | - | chr3.1:59366252-59366271 | None:intergenic | 50.0% |
| AAAGACGTCTGAGGAGGACG+GGG | + | chr3.1:59364846-59364865 | MS.gene039956:CDS | 55.0% | |
| CAAAGACGTCTGAGGAGGAC+GGG | + | chr3.1:59364845-59364864 | MS.gene039956:CDS | 55.0% | |
| GGCAAGATGCAGACTCCTGT+TGG | + | chr3.1:59365653-59365672 | MS.gene039956:CDS | 55.0% | |
| GTCCTCCTCAGACGTCTTTG+TGG | - | chr3.1:59364845-59364864 | None:intergenic | 55.0% | |
| TCTGAGGAGGACGGGGAAAA+AGG | + | chr3.1:59364853-59364872 | MS.gene039956:CDS | 55.0% | |
| TCTGCCACAGTGCTTAGGAG+AGG | + | chr3.1:59364801-59364820 | MS.gene039956:intron | 55.0% | |
| TGCCACAAAGACGTCTGAGG+AGG | + | chr3.1:59364840-59364859 | MS.gene039956:CDS | 55.0% | |
| ! | TGCCCATGACCTGCCATTTC+CGG | - | chr3.1:59364507-59364526 | None:intergenic | 55.0% |
| CCACAGTGCTTAGGAGAGGC+TGG | + | chr3.1:59364805-59364824 | MS.gene039956:intron | 60.0% | |
| ! | AGAAACGCGAGAGCGCATGG+CGG | - | chr3.1:59363386-59363405 | None:intergenic | 60.0% |
| ! | CCAGCCTCTCCTAAGCACTG+TGG | - | chr3.1:59364808-59364827 | None:intergenic | 60.0% |
| ! | GTGAGAAACGCGAGAGCGCA+TGG | - | chr3.1:59363389-59363408 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.1 | gene | 59363319 | 59366422 | 59363319 | ID=MS.gene039956 |
| chr3.1 | mRNA | 59363319 | 59366422 | 59363319 | ID=MS.gene039956.t1;Parent=MS.gene039956 |
| chr3.1 | exon | 59363319 | 59363399 | 59363319 | ID=MS.gene039956.t1.exon1;Parent=MS.gene039956.t1 |
| chr3.1 | CDS | 59363319 | 59363399 | 59363319 | ID=cds.MS.gene039956.t1;Parent=MS.gene039956.t1 |
| chr3.1 | exon | 59364811 | 59365115 | 59364811 | ID=MS.gene039956.t1.exon2;Parent=MS.gene039956.t1 |
| chr3.1 | CDS | 59364811 | 59365115 | 59364811 | ID=cds.MS.gene039956.t1;Parent=MS.gene039956.t1 |
| chr3.1 | exon | 59365277 | 59365382 | 59365277 | ID=MS.gene039956.t1.exon3;Parent=MS.gene039956.t1 |
| chr3.1 | CDS | 59365277 | 59365382 | 59365277 | ID=cds.MS.gene039956.t1;Parent=MS.gene039956.t1 |
| chr3.1 | exon | 59365479 | 59365829 | 59365479 | ID=MS.gene039956.t1.exon4;Parent=MS.gene039956.t1 |
| chr3.1 | CDS | 59365479 | 59365829 | 59365479 | ID=cds.MS.gene039956.t1;Parent=MS.gene039956.t1 |
| chr3.1 | exon | 59366050 | 59366132 | 59366050 | ID=MS.gene039956.t1.exon5;Parent=MS.gene039956.t1 |
| chr3.1 | CDS | 59366050 | 59366132 | 59366050 | ID=cds.MS.gene039956.t1;Parent=MS.gene039956.t1 |
| chr3.1 | exon | 59366212 | 59366422 | 59366212 | ID=MS.gene039956.t1.exon6;Parent=MS.gene039956.t1 |
| chr3.1 | CDS | 59366212 | 59366422 | 59366212 | ID=cds.MS.gene039956.t1;Parent=MS.gene039956.t1 |
| Gene Sequence |
| Protein sequence |
